Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM20	0	genome.wustl.edu	37	14	70989500	70989500	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	70989500	70989500	C	A	SNP	ADAM20	NM_003814.4	human	genbank	58_37c	-1	reviewed	missense	c.2125	p.A709S	1.000	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADCY5	0	genome.wustl.edu	37	3	123051483	123051483	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	123051483	123051483	C	T	SNP	ADCY5	NM_183357.1	human	genbank	58_37c	-1	validated	silent	c.1446	p.A482	0.005	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AMBN	0	genome.wustl.edu	37	4	71471931	71471931	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	71471931	71471931	A	G	SNP	AMBN	NM_016519.4	human	genbank	58_37c	+1	reviewed	silent	c.828	p.G276	0.976	HMMPfam_Amelin,HMMSmart_SM00817	HMMPfam_Amelin,HMMSmart_SM00817	-	no_errors
APOL3	0	genome.wustl.edu	37	22	36541561	36541561	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	22	36541561	36541561	C	T	SNP	APOL3	NM_145640.2	human	genbank	58_37c	-1	reviewed	missense	c.310	p.E104K	0.000	HMMPfam_ApoL	HMMPfam_ApoL	-	no_errors
ASH1L	0	genome.wustl.edu	37	1	155449169	155449171	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	155449169	155449171	AGG	-	DEL	ASH1L	NM_018489.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3492_3490	p.P1164in_frame_del	0.952:1.000:1.000	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
ATP6V0D2	0	genome.wustl.edu	37	8	87153720	87153720	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	87153720	87153720	G	T	SNP	ATP6V0D2	NM_152565.1	human	genbank	58_37c	+1	validated	nonsense	c.523	p.E175*	1.000	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d	-	no_errors
BAT2L2	0	genome.wustl.edu	37	1	171526725	171526725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	171526725	171526725	C	T	SNP	BAT2L2	NM_015172.3	human	genbank	58_37c	+1	validated	missense	c.5468	p.T1823I	0.346	NULL	HMMPfam_BAT2_N	-	no_errors
BNC2	0	genome.wustl.edu	37	9	16727800	16727800	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	16727800	16727800	G	C	SNP	BNC2	NM_017637.5	human	genbank	58_37c	-1	validated	missense	c.325	p.Q109E	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
C3orf32	0	genome.wustl.edu	37	3	8671361	8671361	+	Missense_Mutation	SNP	C	G	G	rs144988627	byFrequency	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	8671361	8671361	C	G	SNP	C3orf32	NM_015931.1	human	genbank	58_37c	-1	predicted	missense	c.511	p.G171R	0.333	NULL	NULL	-	no_errors
CALHM3	0	genome.wustl.edu	37	10	105233294	105233294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	105233294	105233294	G	T	SNP	CALHM3	NM_001129742.1	human	genbank	58_37c	-1	validated	missense	c.711	p.D237E	1.000	NULL	NULL	-	no_errors
CASKIN1	0	genome.wustl.edu	37	16	2236791	2236791	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	16	2236791	2236791	C	G	SNP	CASKIN1	NM_020764.3	human	genbank	58_37c	-1	validated	missense	c.965	p.G322A	1.000	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SAM_homology	-	no_errors
CCDC144B	0	genome.wustl.edu	37	17	18498059	18498060	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	18498059	18498060	-	A	INS	CCDC144B	NM_182568.3	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.1866_1865	p.M622fs	0.801:0.603	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CD163L1	0	genome.wustl.edu	37	12	7531857	7531857	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	7531857	7531857	G	A	SNP	CD163L1	NM_174941.4	human	genbank	58_37c	-1	reviewed	silent	c.2088	p.S696	0.675	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CD93	0	genome.wustl.edu	37	20	23065078	23065078	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	20	23065078	23065078	G	C	SNP	CD93	NM_012072.3	human	genbank	58_37c	-1	reviewed	missense	c.1752	p.F584L	0.976	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Lectin_C,HMMSmart_CLECT,HMMSmart_EGF_CA,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_C-type_lectin_fold,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
CHMP7	0	genome.wustl.edu	37	8	23114072	23114072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	23114072	23114072	C	T	SNP	CHMP7	NM_152272.3	human	genbank	58_37c	+1	validated	missense	c.757	p.R253C	0.752	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
CTNND2	0	genome.wustl.edu	37	5	11082867	11082867	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	11082867	11082867	C	A	SNP	CTNND2	NM_001332.2	human	genbank	58_37c	-1	validated	missense	c.2729	p.C910F	1.000	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
DGCR14	0	genome.wustl.edu	37	22	19121847	19121847	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	22	19121847	19121847	C	T	SNP	DGCR14	NM_022719.2	human	genbank	58_37c	-1	reviewed	silent	c.1293	p.P431	0.021	NULL	HMMPfam_Es2	-	no_errors
DMXL1	0	genome.wustl.edu	37	5	118500331	118500331	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	118500331	118500331	G	A	SNP	DMXL1	NM_005509.4	human	genbank	58_37c	+1	validated	nonsense	c.4832	p.W1611*	1.000	NULL	PatternScan_SUBTILASE_ASP,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DPPA3	0	genome.wustl.edu	37	12	7867843	7867843	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	7867843	7867843	T	C	SNP	DPPA3	NM_199286.2	human	genbank	58_37c	+1	reviewed	silent	c.147	p.S49	0.000	NULL	NULL	-	no_errors
DZIP1	0	genome.wustl.edu	37	13	96293774	96293774	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	96293774	96293774	C	A	SNP	DZIP1	NM_198968.2	human	genbank	58_37c	-1	validated	silent	c.372	p.A124	0.996	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors
ENSG00000197735	0	genome.wustl.edu	37	10	134237249	134237250	+	Frame_Shift_Ins	INS	-	-	TGTG	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	134237249	134237250	-	TGTG	INS	ENSG00000197735	ENST00000354756	human	ensembl	58_37c	-1	known	frame_shift_ins	c.392_391	p.S131fs	0.024:0.028	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000210082	0	genome.wustl.edu	37	MT	2071	2071	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	MT	2071	2071	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000249712	0	genome.wustl.edu	37	9	139642116	139642117	+	RNA	INS	-	-	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	139642116	139642117	-	C	INS	ENSG00000249712	ENST00000512586	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.025:0.024	-	-	-	no_errors
FAM45A	0	genome.wustl.edu	37	10	120871384	120871384	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	120871384	120871384	G	C	SNP	FAM45A	NM_207009.2	human	genbank	58_37c	+1	validated	silent	c.276	p.L92	1.000	NULL	NULL	-	no_errors
FHOD3	0	genome.wustl.edu	37	18	34298167	34298167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	18	34298167	34298167	C	T	SNP	FHOD3	NM_025135.2	human	genbank	58_37c	+1	validated	missense	c.2381	p.P794L	0.001	NULL	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd,superfamily_ARM-type_fold	-	no_errors
FLNB	0	genome.wustl.edu	37	3	58087962	58087962	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	58087962	58087962	C	G	SNP	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	missense	c.1378	p.R460G	1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
FRY	0	genome.wustl.edu	37	13	32698787	32698787	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	32698787	32698787	T	C	SNP	FRY	NM_023037.2	human	genbank	58_37c	+1	validated	silent	c.604	p.L202	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
FXYD3	0	genome.wustl.edu	37	19	35614360	35614360	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	35614360	35614360	G	C	SNP	FXYD3	NM_001136007.1	human	genbank	58_37c	+1	reviewed	nonstop	c.434	p.*145S	0.971	NULL	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD	-	no_errors
GABARAP	0	genome.wustl.edu	37	17	7144763	7144763	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	7144763	7144763	G	A	SNP	GABARAP	NM_007278.1	human	genbank	58_37c	-1	reviewed	silent	c.186	p.F62	1.000	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like	-	no_errors
GALNTL6	0	genome.wustl.edu	37	4	173961139	173961141	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	173961139	173961141	AGA	-	DEL	GALNTL6	NM_001034845.2	human	genbank	58_37c	+1	validated	in_frame_del	c.1694_1696	p.K567in_frame_del	1.000:1.000:1.000	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GOLGA3	0	genome.wustl.edu	37	12	133349744	133349744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	133349744	133349744	C	T	SNP	GOLGA3	NM_005895.3	human	genbank	58_37c	-1	reviewed	missense	c.4444	p.D1482N	0.011	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
GPHN	0	genome.wustl.edu	37	14	67147848	67147848	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	67147848	67147848	C	A	SNP	GPHN	NM_020806.4	human	genbank	58_37c	+1	reviewed	missense	c.88	p.L30I	1.000	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth,HMMPfam_MoeA_N,superfamily_MoeA_N,HMMPfam_MoeA_C,superfamily_MoeA_C,PatternScan_MOCF_BIOSYNTHESIS_1,PatternScan_MOCF_BIOSYNTHESIS_2	-	no_errors
GRHPR	0	genome.wustl.edu	37	9	37422820	37422820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	37422820	37422820	C	T	SNP	GRHPR	NM_012203.1	human	genbank	58_37c	+1	reviewed	missense	c.73	p.R25W	0.151	HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like	-	no_errors
HERC1	0	genome.wustl.edu	37	15	64067208	64067208	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	64067208	64067208	T	C	SNP	HERC1	NM_003922.3	human	genbank	58_37c	-1	reviewed	silent	c.615	p.P205	0.998	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
HERC2	0	genome.wustl.edu	37	15	28479350	28479350	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	28479350	28479350	C	G	SNP	HERC2	NM_004667.4	human	genbank	58_37c	-1	reviewed	missense	c.4084	p.D1362H	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
HPGDS	0	genome.wustl.edu	37	4	95239059	95239059	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	95239059	95239059	C	A	SNP	HPGDS	NM_014485.2	human	genbank	58_37c	-1	reviewed	missense	c.191	p.S64I	1.000	HMMPfam_GST_N,superfamily_Thioredoxin-like	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
IGDCC4	0	genome.wustl.edu	37	15	65689327	65689327	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	65689327	65689327	T	A	SNP	IGDCC4	NM_020962.1	human	genbank	58_37c	-1	provisional	missense	c.842	p.D281V	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IGLV3-16	0	genome.wustl.edu	37	22	23089942	23089943	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	22	23089942	23089943	CT	-	DEL	IGLV3-16	ENST00000390311	human	ensembl	58_37c	+1	known	frame_shift_del	c.35_36	p.C14fs	0.818:0.656	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon:bad_bp_length_for_coding_region
KDM5C	0	genome.wustl.edu	37	X	53247464	53247464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	53247464	53247464	G	A	SNP	KDM5C	NM_004187.3	human	genbank	58_37c	-1	reviewed	silent	c.345	p.L115	1.000	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
KIAA0947	0	genome.wustl.edu	37	5	5465079	5465079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	5465079	5465079	G	A	SNP	KIAA0947	NM_015325.1	human	genbank	58_37c	+1	validated	missense	c.5632	p.A1878T	0.000	NULL	NULL	-	no_errors
LOC100128682	0	genome.wustl.edu	37	19	35898796	35898797	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	35898796	35898797	-	C	INS	LOC100128682	XM_001719567.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.147_148	p.L49fs	0.325:0.023	NULL	NULL	-	no_errors
LOC100129231	0	genome.wustl.edu	37	X	123338646	123338646	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	123338646	123338646	T	C	SNP	LOC100129231	XR_078598.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC100130176	0	genome.wustl.edu	37	X	102906963	102906963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	102906963	102906963	C	T	SNP	LOC100130176	XM_001723372.1	human	genbank	58_37c	-1	model	silent	c.72	p.L24	1.000	NULL	NULL	-	no_errors
LOC100286979	0	genome.wustl.edu	37	2	87357225	87357225	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	87357225	87357225	G	A	SNP	LOC100286979	XR_078255.1	human	genbank	58_37c	+1	model	splice_site	c.NULL	NULL	1.000	-	-	-	pseudogene
LOC100288750	0	genome.wustl.edu	37	10	42608926	42608926	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	42608926	42608926	A	G	SNP	LOC100288750	XM_002342981.1	human	genbank	58_37c	-1	model	silent	c.96	p.H32	0.192	NULL	NULL	-	no_errors
LOC121498	0	genome.wustl.edu	37	12	63397388	63397388	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	63397388	63397388	C	T	SNP	LOC121498	XR_078463.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.006	-	-	-	pseudogene
LRRC16B	0	genome.wustl.edu	37	14	24534925	24534925	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	24534925	24534925	G	T	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	missense	c.3491	p.R1164I	1.000	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
LSM14B	0	genome.wustl.edu	37	20	60706418	60706418	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	20	60706418	60706418	A	T	SNP	LSM14B	NM_144703.2	human	genbank	58_37c	+1	validated	missense	c.842	p.K281M	0.922	NULL	HMMPfam_DFDF,HMMPfam_FFD_TFG	-	no_errors
LYRM4	0	genome.wustl.edu	37	6	5109694	5109694	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	6	5109694	5109694	T	C	SNP	LYRM4	NM_020408.4	human	genbank	58_37c	-1	validated	missense	c.239	p.K80R	1.000	NULL	HMMPfam_Complex1_LYR	-	no_errors
MAP7D2	0	genome.wustl.edu	37	X	20069029	20069029	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	20069029	20069029	G	C	SNP	MAP7D2	ENST00000379643	human	ensembl	58_37c	-1	known	missense	c.505	p.L169V	1.000	NULL	HMMPfam_MAP7	-	no_errors
MAPT	0	genome.wustl.edu	37	17	44087762	44087762	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	44087762	44087762	C	T	SNP	MAPT	NM_001123066.3	human	genbank	58_37c	+1	validated	silent	c.1914	p.G638	0.998	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors
MMRN1	0	genome.wustl.edu	37	4	90857362	90857362	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	4	90857362	90857362	T	A	SNP	MMRN1	NM_007351.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2531	p.L844*	0.495	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_C1q,HMMSmart_SM00110,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_TNF-like,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195507132	195507132	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	195507132	195507132	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.10935	p.H3645	0.306	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NAMPT	0	genome.wustl.edu	37	7	105893543	105893543	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	7	105893543	105893543	G	A	SNP	NAMPT	NM_005746.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1285	p.R429*	0.996	HMMPfam_NAPRTase	HMMPfam_NAPRTase	-	no_errors
NCKAP5	0	genome.wustl.edu	37	2	133541010	133541010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	133541010	133541010	G	A	SNP	NCKAP5	NM_207363.2	human	genbank	58_37c	-1	validated	missense	c.3374	p.A1125V	0.004	NULL	NULL	-	no_errors
NOC3L	0	genome.wustl.edu	37	10	96101465	96101465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	10	96101465	96101465	G	A	SNP	NOC3L	NM_022451.9	human	genbank	58_37c	-1	provisional	silent	c.1609	p.L537	0.996	NULL	HMMPfam_CBF,HMMPfam_NOC3p	-	no_errors
OR3A4	0	genome.wustl.edu	37	17	3213991	3213991	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	3213991	3213991	C	G	SNP	OR3A4	NR_024128.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.991	-	-	-	pseudogene
OR5P2	0	genome.wustl.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	11	7818383	7818384	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	NM_153444.1	human	genbank	58_37c	-1	provisional	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.001:0.001	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ORC2L	0	genome.wustl.edu	37	2	201790582	201790582	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	201790582	201790582	C	T	SNP	ORC2L	NM_006190.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1124	p.W375*	0.999	HMMPfam_ORC2	HMMPfam_ORC2	-	no_errors
OTUD7B	0	genome.wustl.edu	37	1	149943095	149943095	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	149943095	149943095	C	A	SNP	OTUD7B	NM_020205.2	human	genbank	58_37c	-1	validated	missense	c.170	p.S57I	1.000	NULL	HMMSmart_SM00259,HMMPfam_OTU,superfamily_UBA-like	-	no_errors
PCDH20	0	genome.wustl.edu	37	13	61986915	61986918	+	Frame_Shift_Del	DEL	AACC	AACC	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	AACC	AACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	13	61986915	61986918	AACC	-	DEL	PCDH20	NM_022843.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.1317_1314	p.V439fs	0.963:0.998:0.990:0.068	superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHB7	0	genome.wustl.edu	37	5	140553150	140553150	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	5	140553150	140553150	C	G	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.734	p.S245W	0.098	superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PFKL	0	genome.wustl.edu	37	21	45725274	45725274	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	21	45725274	45725274	C	T	SNP	PFKL	ENST00000403390	human	ensembl	58_37c	+1	known	nonsense	c.64	p.R22*	0.000	NULL	HMMPfam_PFK,superfamily_Ppfruckinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916920	178916925	+	In_Frame_Del	DEL	GAACCA	GAACCA	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	GAACCA	GAACCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	178916920	178916925	GAACCA	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.307_312	p.EP103in_frame_del	1.000:1.000:0.998:1.000:1.000:0.995	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLS1	0	genome.wustl.edu	37	3	142430425	142430425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	142430425	142430425	G	A	SNP	PLS1	NM_001145319.1	human	genbank	58_37c	+1	reviewed	missense	c.1712	p.R571K	0.999	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMSmart_EFh,superfamily_Calponin-homology,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
PTK2	0	genome.wustl.edu	37	8	141756921	141756921	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	141756921	141756921	G	C	SNP	PTK2	NM_005607.3	human	genbank	58_37c	-1	reviewed	missense	c.1522	p.L508V	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Focal_AT,superfamily_Focal_AT,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
QTRTD1	0	genome.wustl.edu	37	3	113795785	113795785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	113795785	113795785	C	T	SNP	QTRTD1	NM_024638.2	human	genbank	58_37c	+1	provisional	missense	c.742	p.P248S	1.000	HMMPfam_TGT,superfamily_tRNA_ribo_trans	HMMPfam_TGT,superfamily_tRNA_ribo_trans	-	no_errors
RBM10	0	genome.wustl.edu	37	X	47045972	47045972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	X	47045972	47045972	G	A	SNP	RBM10	NM_005676.3	human	genbank	58_37c	+1	reviewed	missense	c.2767	p.V923M	1.000	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
RC3H2	0	genome.wustl.edu	37	9	125652667	125652667	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	125652667	125652667	C	T	SNP	RC3H2	NM_001100588.1	human	genbank	58_37c	-1	validated	silent	c.507	p.Q169	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box,superfamily_CCCH zinc finger	-	no_errors
RECQL5	0	genome.wustl.edu	37	17	73657754	73657754	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	73657754	73657754	C	G	SNP	RECQL5	NM_004259.5	human	genbank	58_37c	-1	validated	missense	c.806	p.R269T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_RecQ5,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RFX4	0	genome.wustl.edu	37	12	107002600	107002600	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	107002600	107002600	C	G	SNP	RFX4	NM_213594.1	human	genbank	58_37c	+1	reviewed	missense	c.69	p.N23K	0.983	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
RPTN	0	genome.wustl.edu	37	1	152129314	152129314	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	152129314	152129314	A	C	SNP	RPTN	NM_001122965.1	human	genbank	58_37c	-1	validated	missense	c.261	p.H87Q	0.042	superfamily_EF-hand	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SLC10A1	0	genome.wustl.edu	37	14	70252848	70252848	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	14	70252848	70252848	G	T	SNP	SLC10A1	NM_003049.3	human	genbank	58_37c	-1	validated	missense	c.533	p.S178Y	0.977	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
SLC1A6	0	genome.wustl.edu	37	19	15073025	15073025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	15073025	15073025	G	A	SNP	SLC1A6	NM_005071.1	human	genbank	58_37c	-1	provisional	missense	c.724	p.R242W	0.076	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors
SNAPC4	0	genome.wustl.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	9	139277995	139277997	GCT	-	DEL	SNAPC4	NM_003086.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1626_1624	p.S542in_frame_del	0.000:0.005:0.005	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
STK25	0	genome.wustl.edu	37	2	242437657	242437657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	242437657	242437657	G	A	SNP	STK25	NM_006374.3	human	genbank	58_37c	-1	provisional	missense	c.1025	p.S342L	0.856	NULL	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TGFBR3	0	genome.wustl.edu	37	1	92185007	92185007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	92185007	92185007	C	T	SNP	TGFBR3	NM_003243.3	human	genbank	58_37c	-1	validated	silent	c.1428	p.S476	0.000	HMMPfam_Zona_pellucida,HMMSmart_ZP	HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors
TMEM115	0	genome.wustl.edu	37	3	50392784	50392784	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	3	50392784	50392784	G	A	SNP	TMEM115	NM_007024.4	human	genbank	58_37c	-1	validated	missense	c.1046	p.P349L	0.294	NULL	HMMPfam_DUF1751	-	no_errors
TMTC1	0	genome.wustl.edu	37	12	29669421	29669421	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	12	29669421	29669421	T	G	SNP	TMTC1	NM_175861.2	human	genbank	58_37c	-1	provisional	splice_site	c.1846-2	e14-2	1.000	-	-	-	no_errors
TRGC1	0	genome.wustl.edu	37	7	38305276	38305276	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	7	38305276	38305276	T	G	SNP	TRGC1	ENST00000443402	human	ensembl	58_37c	-1	known	missense	c.4	p.N2H	0.000	NULL	HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TTN	0	genome.wustl.edu	37	2	179469856	179469856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	179469856	179469856	T	C	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.46344	p.I15448M	0.997	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179499514	179499514	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	179499514	179499514	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.34383	p.D11461E	1.000	HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBR3	0	genome.wustl.edu	37	2	170780651	170780651	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	170780651	170780651	A	C	SNP	UBR3	NM_172070.3	human	genbank	58_37c	+1	validated	missense	c.1990	p.M664L	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_SM00396,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ULK2	0	genome.wustl.edu	37	17	19699015	19699015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	19699015	19699015	G	A	SNP	ULK2	NM_001142610.1	human	genbank	58_37c	-1	reviewed	missense	c.2021	p.S674L	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
VASH2	0	genome.wustl.edu	37	1	213145986	213145986	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	1	213145986	213145986	G	T	SNP	VASH2	NM_024749.3	human	genbank	58_37c	+1	validated	nonsense	c.430	p.G144*	1.000	NULL	NULL	-	no_errors
VCPIP1	0	genome.wustl.edu	37	8	67546842	67546842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	8	67546842	67546842	G	A	SNP	VCPIP1	NM_025054.4	human	genbank	58_37c	-1	validated	missense	c.3563	p.A1188V	1.000	NULL	HMMPfam_OTU	-	no_errors
VPS53	0	genome.wustl.edu	37	17	556562	556562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	17	556562	556562	C	T	SNP	VPS53	NM_001128159.1	human	genbank	58_37c	-1	reviewed	missense	c.577	p.G193R	1.000	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors
WASH3P	0	genome.wustl.edu	37	15	102516539	102516539	+	RNA	SNP	C	C	G	rs76551781	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	15	102516539	102516539	C	G	SNP	WASH3P	NR_003659.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
ZNF142	0	genome.wustl.edu	37	2	219513520	219513520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	2	219513520	219513520	C	T	SNP	ZNF142	NM_001105537.1	human	genbank	58_37c	-1	validated	missense	c.1111	p.E371K	0.998	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF551	0	genome.wustl.edu	37	19	58199270	58199270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	58199270	58199270	C	T	SNP	ZNF551	NM_138347.3	human	genbank	58_37c	+1	validated	missense	c.1579	p.R527C	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF577	0	genome.wustl.edu	37	19	52381691	52381691	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	19	52381691	52381691	G	T	SNP	ZNF577	NM_032679.2	human	genbank	58_37c	-1	validated	silent	c.138	p.V46	0.908	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF862	0	genome.wustl.edu	37	7	149559197	149559197	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RH-01A-21D-A167-09	TCGA-E9-A1RH-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2ecb84c0-c307-4fa9-85e3-2f722dd365a3	eb6b01e0-150f-4c06-81a8-bd7df58aa879	7	149559197	149559197	G	T	SNP	ZNF862	NM_001099220.1	human	genbank	58_37c	+1	provisional	missense	c.2948	p.G983V	0.731	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00597,HMMPfam_hATC	-	no_errors
