Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKAP9	0	genome.wustl.edu	37	7	91718998	91718998	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	91718998	91718998	T	C	SNP	AKAP9	ENST00000435423	human	ensembl	58_37c	+1	known	missense	c.947	p.L316P	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CEP57	0	genome.wustl.edu	37	11	95561001	95561002	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	95561001	95561002	-	T	INS	CEP57	NM_014679.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.937_938	p.M314fs	1.000:0.997	HMMPfam_DUF1167	HMMPfam_DUF1167	-	no_errors
CNGA2	0	genome.wustl.edu	37	X	150912869	150912869	+	Missense_Mutation	SNP	C	C	T	rs149002674	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	X	150912869	150912869	C	T	SNP	CNGA2	NM_005140.1	human	genbank	58_37c	+1	reviewed	missense	c.1894	p.R632C	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
COL6A3	0	genome.wustl.edu	37	2	238253836	238253836	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	238253836	238253836	G	A	SNP	COL6A3	NM_004369.3	human	genbank	58_37c	-1	reviewed	silent	c.7113	p.G2371	0.265	HMMPfam_Collagen	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242869	31242869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	31242869	31242869	G	A	SNP	DDX11	ENST00000404673	human	ensembl	58_37c	+1	known	missense	c.842	p.R281K	0.203	HMMSmart_DEXDc2	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540	-	no_errors
DDX11L8	0	genome.wustl.edu	37	12	9453702	9453702	+	Missense_Mutation	SNP	C	C	T	rs71447578	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	9453702	9453702	C	T	SNP	DDX11L8	ENST00000341155	human	ensembl	58_37c	+1	known	missense	c.1108	p.P370S	1.000	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DUSP19	0	genome.wustl.edu	37	2	183943684	183943684	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	183943684	183943684	T	C	SNP	DUSP19	NM_080876.3	human	genbank	58_37c	+1	validated	missense	c.23	p.I8T	1.000	NULL	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ENSG00000249845	0	genome.wustl.edu	37	17	75557625	75557625	+	RNA	SNP	C	A	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	75557625	75557625	C	A	SNP	ENSG00000249845	ENST00000510484	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.038	-	-	-	no_errors
EPHX3	0	genome.wustl.edu	37	19	15338906	15338906	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	15338906	15338906	A	G	SNP	EPHX3	NM_001142886.1	human	genbank	58_37c	-1	validated	missense	c.622	p.S208P	0.007	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
FAM48B1	0	genome.wustl.edu	37	X	24382569	24382569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	X	24382569	24382569	G	A	SNP	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	silent	c.1692	p.A564	0.000	NULL	NULL	-	no_errors
GOLT1A	0	genome.wustl.edu	37	1	204172023	204172023	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	1	204172023	204172023	C	T	SNP	GOLT1A	NM_198447.1	human	genbank	58_37c	-1	provisional	splice_site	c.117+1	e2+1	1.000	-	-	-	no_errors
HIST1H3B	0	genome.wustl.edu	37	6	26032071	26032071	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	26032071	26032071	C	G	SNP	HIST1H3B	NM_003537.3	human	genbank	58_37c	-1	reviewed	missense	c.218	p.R73P	1.000	HMMSmart_SM00428,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IQGAP1	0	genome.wustl.edu	37	15	90969467	90969470	+	Frame_Shift_Del	DEL	AAAT	AAAT	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	AAAT	AAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	15	90969467	90969470	AAAT	-	DEL	IQGAP1	NM_003870.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.281_284	p.K94fs	1.000:1.000:1.000:1.000	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RasGAP_C,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KCNJ14	0	genome.wustl.edu	37	19	48967521	48967521	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	48967521	48967521	C	G	SNP	KCNJ14	NM_013348.2	human	genbank	58_37c	+1	reviewed	missense	c.798	p.I266M	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
LAIR2	0	genome.wustl.edu	37	19	55019321	55019321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	55019321	55019321	G	A	SNP	LAIR2	NM_002288.3	human	genbank	58_37c	+1	reviewed	missense	c.286	p.A96T	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
LLGL2	0	genome.wustl.edu	37	17	73566549	73566549	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	73566549	73566549	G	A	SNP	LLGL2	NM_001031803.1	human	genbank	58_37c	+1	reviewed	silent	c.1995	p.R665	0.925	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
LOC100131471	0	genome.wustl.edu	37	6	143664357	143664357	+	RNA	SNP	A	A	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	143664357	143664357	A	G	SNP	LOC100131471	XR_037878.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100292591	0	genome.wustl.edu	37	9	19032889	19032889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	19032889	19032889	G	A	SNP	LOC100292591	XM_002346181.1	human	genbank	58_37c	+1	model	missense	c.362	p.R121K	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC440180	0	genome.wustl.edu	37	14	57509058	57509064	+	RNA	DEL	TCCAAGC	TCCAAGC	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	TCCAAGC	TCCAAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	14	57509058	57509064	TCCAAGC	-	DEL	LOC440180	XR_017569.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.700:0.647:0.596:0.545:0.495:0.446:0.397	-	-	-	pseudogene
LOC642236	0	genome.wustl.edu	37	9	68430215	68430215	+	RNA	SNP	G	G	T	rs71256887	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	68430215	68430215	G	T	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC642236	0	genome.wustl.edu	37	9	68430233	68430233	+	RNA	SNP	T	T	G	rs4296242	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	68430233	68430233	T	G	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRC37A2	0	genome.wustl.edu	37	17	44623731	44623731	+	Missense_Mutation	SNP	C	C	T	rs2684612	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	44623731	44623731	C	T	SNP	LRRC37A2	NM_001006607.2	human	genbank	58_37c	+1	validated	missense	c.3164	p.T1055I	0.001	NULL	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
LRRTM3	0	genome.wustl.edu	37	10	68857462	68857462	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	10	68857462	68857462	G	C	SNP	LRRTM3	NM_178011.3	human	genbank	58_37c	+1	validated	missense	c.1654	p.D552H	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195511523	195511523	+	Missense_Mutation	SNP	C	C	G	rs142766505	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	3	195511523	195511523	C	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.6928	p.A2310P	0.376	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1265872	1265872	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	1265872	1265872	G	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.7771	p.G2591R	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MXD3	0	genome.wustl.edu	37	5	176737446	176737450	+	Frame_Shift_Del	DEL	CGGCG	CGGCG	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	CGGCG	CGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	5	176737446	176737450	CGGCG	-	DEL	MXD3	NM_031300.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.302_298	p.R100fs	0.136:0.127:0.144:0.986:1.000	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
NBEAL2	0	genome.wustl.edu	37	3	47046220	47046240	+	Splice_Site	DEL	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	3	47046220	47046240	GTTCCCTGCCAACCCCCAGAG	-	DEL	NBEAL2	ENST00000445550	human	ensembl	58_37c	+1	known	splice_site_del	c.135+1_21	e1+1	0.006:0.004:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000	-	-	-	no_start_codon
NOSIP	0	genome.wustl.edu	37	19	50059664	50059664	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	50059664	50059664	G	A	SNP	NOSIP	NM_015953.3	human	genbank	58_37c	-1	provisional	silent	c.744	p.L248	0.003	superfamily_SSF57850	HMMPfam_U-box,superfamily_SSF57850	-	no_errors
PCDHGA3	0	genome.wustl.edu	37	5	140725783	140725783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	5	140725783	140725783	C	T	SNP	PCDHGA3	NM_018916.3	human	genbank	58_37c	+1	reviewed	missense	c.2183	p.S728L	0.067	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	A	A	rs121913284	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHG1	0	genome.wustl.edu	37	6	151152648	151152648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	6	151152648	151152648	C	G	SNP	PLEKHG1	NM_001029884.1	human	genbank	58_37c	+1	provisional	missense	c.2401	p.Q801E	0.126	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
POLE2	0	genome.wustl.edu	37	14	50118020	50118020	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	14	50118020	50118020	A	T	SNP	POLE2	NM_002692.2	human	genbank	58_37c	-1	provisional	silent	c.1287	p.R429	0.997	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors
PPFIA4	0	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	1	203023240	203023241	-	GC	INS	PPFIA4	ENST00000447715	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1752_1753	p.P584fs	0.005:0.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
RMI1	0	genome.wustl.edu	37	9	86616967	86616967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	9	86616967	86616967	C	A	SNP	RMI1	NM_024945.2	human	genbank	58_37c	+1	validated	missense	c.1066	p.P356T	0.004	NULL	HMMPfam_tRNA_anti,HMMPfam_DUF1767	-	no_errors
RRP1	0	genome.wustl.edu	37	21	45222219	45222219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	21	45222219	45222219	G	A	SNP	RRP1	NM_003683.5	human	genbank	58_37c	+1	reviewed	silent	c.1074	p.Q358	0.000	NULL	HMMPfam_Nop52	-	no_errors
SGK3	0	genome.wustl.edu	37	8	67716646	67716646	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	67716646	67716646	C	A	SNP	SGK3	NM_001033578.1	human	genbank	58_37c	+1	reviewed	missense	c.217	p.P73T	1.000	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SLC17A8	0	genome.wustl.edu	37	12	100795586	100795586	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	12	100795586	100795586	C	A	SNP	SLC17A8	NM_139319.2	human	genbank	58_37c	+1	reviewed	silent	c.708	p.P236	0.736	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC30A10	0	genome.wustl.edu	37	1	220088901	220088901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	1	220088901	220088901	C	T	SNP	SLC30A10	NM_018713.2	human	genbank	58_37c	-1	validated	missense	c.1348	p.A450T	0.000	NULL	HMMPfam_Cation_efflux	-	no_errors
SLC37A2	0	genome.wustl.edu	37	11	124949049	124949049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	124949049	124949049	C	T	SNP	SLC37A2	NM_198277.2	human	genbank	58_37c	+1	validated	missense	c.356	p.S119L	0.044	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SPOPL	0	genome.wustl.edu	37	2	139316712	139316712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	139316712	139316712	G	T	SNP	SPOPL	NM_001001664.2	human	genbank	58_37c	+1	validated	missense	c.601	p.D201Y	1.000	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,superfamily_BTB/POZ_fold,HMMPfam_BTB	-	no_errors
SPRED3	0	genome.wustl.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	38882864	38882866	CCT	-	DEL	SPRED3	NM_001042522.1	human	genbank	58_37c	+1	validated	in_frame_del	c.359_361	p.S124in_frame_del	1.000:0.995:0.997	superfamily_SSF50729	HMMPfam_WH1,HMMPfam_Sprouty,superfamily_SSF50729	-	no_errors
TACC1	0	genome.wustl.edu	37	8	38693781	38693781	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	38693781	38693781	C	T	SNP	TACC1	NM_006283.2	human	genbank	58_37c	+1	reviewed	silent	c.1815	p.A605	0.223	HMMPfam_TACC	HMMPfam_TACC	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578464	7578476	+	Frame_Shift_Del	DEL	GGGTGCCGGGCGG	GGGTGCCGGGCGG	-	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	GGGTGCCGGGCGG	GGGTGCCGGGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	17	7578464	7578476	GGGTGCCGGGCGG	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.466_454	p.P152fs	0.010:0.012:0.005:0.003:0.004:0.872:0.872:0.000:0.000:0.000:0.000:1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	0	genome.wustl.edu	37	2	179640219	179640219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	179640219	179640219	G	A	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	silent	c.6372	p.I2124	0.997	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
UBE4A	0	genome.wustl.edu	37	11	118255404	118255404	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	11	118255404	118255404	T	G	SNP	UBE4A	NM_004788.2	human	genbank	58_37c	+1	reviewed	missense	c.2273	p.I758S	1.000	HMMPfam_Ufd2P_core	HMMPfam_U-box,HMMSmart_SM00504,HMMPfam_Ufd2P_core,superfamily_RING/U-box	-	no_errors
WDR60	0	genome.wustl.edu	37	7	158734770	158734770	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	7	158734770	158734770	A	G	SNP	WDR60	NM_018051.4	human	genbank	58_37c	+1	validated	missense	c.2933	p.N978S	0.004	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
WIPF1	0	genome.wustl.edu	37	2	175446104	175446104	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	2	175446104	175446104	C	G	SNP	WIPF1	NM_001077269.1	human	genbank	58_37c	-1	reviewed	missense	c.115	p.D39H	1.000	HMMPfam_WH2,HMMSmart_SM00246	HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
ZFAT	0	genome.wustl.edu	37	8	135614282	135614282	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	8	135614282	135614282	C	A	SNP	ZFAT	NM_020863.3	human	genbank	58_37c	-1	reviewed	silent	c.1680	p.V560	0.000	NULL	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF347	0	genome.wustl.edu	37	19	53643755	53643755	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	19	53643755	53643755	G	A	SNP	ZNF347	NM_032584.2	human	genbank	58_37c	-1	validated	nonsense	c.2326	p.Q776*	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF608	0	genome.wustl.edu	37	5	123982628	123982628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A226-01A-21D-A159-09	TCGA-E9-A226-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	866e5e9b-4e6c-49e2-9ea6-560f9bd99c2b	9636c488-836e-43f1-a9c4-4fbcf7d704fc	5	123982628	123982628	G	A	SNP	ZNF608	NM_020747.2	human	genbank	58_37c	-1	validated	missense	c.3449	p.S1150L	0.992	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
