Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACCN2	0	genome.wustl.edu	37	12	50452677	50452677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	50452677	50452677	G	A	SNP	ACCN2	NM_020039.2	human	genbank	58_37c	+1	reviewed	missense	c.128	p.R43Q	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
ADAM29	0	genome.wustl.edu	37	4	175897839	175897839	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	4	175897839	175897839	C	G	SNP	ADAM29	NM_001130703.1	human	genbank	58_37c	+1	reviewed	missense	c.1163	p.T388R	0.000	HMMPfam_Reprolysin	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
CASP8	0	genome.wustl.edu	37	2	202141586	202141586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	2	202141586	202141586	C	T	SNP	CASP8	NM_001080125.1	human	genbank	58_37c	+1	reviewed	missense	c.874	p.R292W	1.000	HMMSmart_SM00115,superfamily_Caspase-like	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CCDC135	0	genome.wustl.edu	37	16	57760065	57760065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	57760065	57760065	G	A	SNP	CCDC135	NM_032269.5	human	genbank	58_37c	+1	validated	missense	c.1844	p.R615H	1.000	NULL	NULL	-	no_errors
CLEC10A	0	genome.wustl.edu	37	17	6979420	6979420	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	17	6979420	6979420	C	G	SNP	CLEC10A	NM_182906.2	human	genbank	58_37c	-1	reviewed	missense	c.404	p.C135S	0.000	HMMPfam_Lectin_N	HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Lectin_N,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
DHCR24	0	genome.wustl.edu	37	1	55331049	55331049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	55331049	55331049	C	T	SNP	DHCR24	NM_014762.3	human	genbank	58_37c	-1	reviewed	missense	c.947	p.R316Q	0.001	NULL	HMMPfam_FAD_binding_4,superfamily_FAD-binding_2	-	no_errors
ENSG00000210144	0	genome.wustl.edu	37	MT	5872	5873	+	RNA	INS	-	-	TT	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	MT	5872	5873	-	TT	INS	ENSG00000210144	ENST00000387409	human	ensembl	58_37c	-1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	654	654	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	MT	654	654	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
EYA3	0	genome.wustl.edu	37	1	28304975	28304975	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	28304975	28304975	G	C	SNP	EYA3	NM_001990.2	human	genbank	58_37c	-1	reviewed	missense	c.1551	p.S517R	1.000	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
F13A1	0	genome.wustl.edu	37	6	6182361	6182361	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	6182361	6182361	A	T	SNP	F13A1	NM_000129.3	human	genbank	58_37c	-1	reviewed	missense	c.1319	p.L440H	0.125	superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
FAM120A	0	genome.wustl.edu	37	9	96294650	96294650	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	9	96294650	96294650	A	G	SNP	FAM120A	ENST00000437660	human	ensembl	58_37c	+1	known	missense	c.1948	p.T650A	1.000	NULL	superfamily_SSF88723	-	no_errors
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	10	135438753	135438753	G	A	SNP	FRG2B	NM_001080998.1	human	genbank	58_37c	-1	provisional	silent	c.687	p.T229	0.707	NULL	NULL	-	no_errors
HDDC2	0	genome.wustl.edu	37	6	125598270	125598270	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	125598270	125598270	T	A	SNP	HDDC2	NM_016063.2	human	genbank	58_37c	-1	validated	missense	c.495	p.Q165H	0.980	NULL	HMMSmart_SM00471,HMMPfam_HD	-	no_errors
KANK3	0	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	19	8398950	8398961	TCGCTGTCGCCA	-	DEL	KANK3	NM_198471.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1478_1467	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
KCNN3	0	genome.wustl.edu	37	1	154842200	154842205	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	1	154842200	154842205	GCTGCT	-	DEL	KCNN3	NM_002249.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.241_236	p.QQ79in_frame_del	0.982:0.903:0.760:0.739:0.710:0.721	NULL	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA0776	0	genome.wustl.edu	37	6	96990799	96990799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	6	96990799	96990799	G	A	SNP	KIAA0776	NM_015323.4	human	genbank	58_37c	+1	validated	missense	c.1309	p.G437R	1.000	NULL	HMMPfam_DUF2042	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123203	16123203	+	RNA	SNP	T	T	C	rs7292373	by2Hit2Allele	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	22	16123203	16123203	T	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.969	-	-	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56161678	56161678	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	5	56161678	56161678	A	G	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.1175	p.Y392C	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MDFIC	0	genome.wustl.edu	37	7	114619630	114619631	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	114619630	114619631	-	A	INS	MDFIC	ENST00000393486	human	ensembl	58_37c	+1	known	frame_shift_ins	c.287_288	p.N98fs	1.000:1.000	NULL	PatternScan_EGF_1	-	no_errors
MED12	0	genome.wustl.edu	37	X	70356283	70356284	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	X	70356283	70356284	-	CA	INS	MED12	NM_005120.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.5178_5179	p.L1729fs	1.000:1.000	NULL	HMMPfam_Med12	-	no_errors
PRB2	0	genome.wustl.edu	37	12	11546742	11546742	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	11546742	11546742	T	C	SNP	PRB2	NM_006248.3	human	genbank	58_37c	-1	validated	silent	c.270	p.Q90	0.238	NULL	NULL	-	no_errors
SETBP1	0	genome.wustl.edu	37	18	42456670	42456671	+	Frame_Shift_Ins	INS	-	-	TCTT	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	18	42456670	42456671	-	TCTT	INS	SETBP1	NM_001130110.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.681_682	p.T227fs	0.000:0.000	NULL	NULL	-	no_errors
SRRT	0	genome.wustl.edu	37	7	100485396	100485396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	7	100485396	100485396	G	A	SNP	SRRT	NM_015908.5	human	genbank	58_37c	+1	validated	missense	c.2242	p.A748T	0.968	HMMPfam_ARS2	HMMPfam_ARS2	-	no_errors
TAT	0	genome.wustl.edu	37	16	71603760	71603761	+	Frame_Shift_Ins	INS	-	-	AGGT	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	16	71603760	71603761	-	AGGT	INS	TAT	NM_000353.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1122_1121	p.M375fs	0.990:1.000	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	PatternScan_AA_TRANSFER_CLASS_1,HMMPfam_Aminotran_1_2,HMMPfam_TAT_ubiq,superfamily_PLP-dependent transferases	-	no_errors
VPS13C	0	genome.wustl.edu	37	15	62214879	62214879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	15	62214879	62214879	G	A	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.6692	p.T2231M	0.000	NULL	HMMPfam_DUF1162	-	no_errors
WSCD2	0	genome.wustl.edu	37	12	108626636	108626636	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A22H-01A-11D-A159-09	TCGA-E9-A22H-10A-01D-A17G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	42993dbb-b99b-4b48-8038-05cf14fec886	7e563645-d8f4-4f6d-b382-2919b7e76d36	12	108626636	108626636	G	A	SNP	WSCD2	NM_014653.2	human	genbank	58_37c	+1	validated	missense	c.1108	p.G370S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_WSC,HMMSmart_SM00321,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
