Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTL9	0	genome.wustl.edu	37	19	8808585	8808585	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	8808585	8808585	G	C	SNP	ACTL9	NM_178525.3	human	genbank	58_37c	-1	validated	missense	c.467	p.A156G	0.998	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	PatternScan_N6_MTASE,HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	-	no_errors
ADAM20	0	genome.wustl.edu	37	14	70989944	70989944	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	70989944	70989944	G	T	SNP	ADAM20	NM_003814.4	human	genbank	58_37c	-1	reviewed	missense	c.1681	p.H561N	0.805	HMMPfam_ADAM_CR,HMMSmart_SM00608	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADCY10	0	genome.wustl.edu	37	1	167778922	167778922	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	167778922	167778922	T	G	SNP	ADCY10	NM_018417.4	human	genbank	58_37c	-1	reviewed	missense	c.4826	p.H1609P	0.897	NULL	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,superfamily_TPR-like	-	no_errors
ARPP21	0	genome.wustl.edu	37	3	35725220	35725220	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	35725220	35725220	A	G	SNP	ARPP21	NM_016300.4	human	genbank	58_37c	+1	validated	silent	c.174	p.S58	1.000	NULL	HMMPfam_R3H,HMMSmart_SM00393,superfamily_R3H domain	-	no_errors
ATP13A4	0	genome.wustl.edu	37	3	193182727	193182727	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	193182727	193182727	A	T	SNP	ATP13A4	NM_032279.2	human	genbank	58_37c	-1	validated	splice_site	c.1461+2	e12+2	1.000	-	-	-	no_errors
ATP1A4	0	genome.wustl.edu	37	1	160145985	160145985	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	160145985	160145985	C	A	SNP	ATP1A4	NM_144699.3	human	genbank	58_37c	+1	reviewed	silent	c.2415	p.P805	0.997	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BAIAP2L2	0	genome.wustl.edu	37	22	38483155	38483156	+	In_Frame_Ins	INS	-	-	TCATGGGTG	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	38483155	38483156	-	TCATGGGTG	INS	BAIAP2L2	NM_025045.4	human	genbank	58_37c	-1	validated	in_frame_ins	c.1235_1234	p.412in_frame_insTPM	0.001:0.006	superfamily_SH3-domain	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_IMD	-	no_errors
C11orf41	0	genome.wustl.edu	37	11	33596315	33596315	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	33596315	33596315	A	G	SNP	C11orf41	NM_012194.1	human	genbank	58_37c	+1	validated	missense	c.3425	p.N1142S	1.000	NULL	NULL	-	no_errors
C12orf74	0	genome.wustl.edu	37	12	93100671	93100671	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	93100671	93100671	G	A	SNP	C12orf74	NM_001037671.2	human	genbank	58_37c	+1	validated	silent	c.264	p.L88	0.001	NULL	PatternScan_TATD_2	-	no_errors
C14orf135	0	genome.wustl.edu	37	14	60592455	60592455	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	60592455	60592455	A	C	SNP	C14orf135	NM_022495.5	human	genbank	58_37c	+1	validated	missense	c.2479	p.I827L	1.000	HMMPfam_Pecanex_C	HMMPfam_Pecanex_C	-	no_errors
C2orf71	0	genome.wustl.edu	37	2	29295725	29295725	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	29295725	29295725	T	C	SNP	C2orf71	NM_001029883.1	human	genbank	58_37c	-1	provisional	missense	c.1403	p.H468R	0.000	NULL	NULL	-	no_errors
CASP8	0	genome.wustl.edu	37	2	202149905	202149905	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	202149905	202149905	C	T	SNP	CASP8	NM_001080125.1	human	genbank	58_37c	+1	reviewed	missense	c.1346	p.T449M	0.000	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CBL	0	genome.wustl.edu	37	11	119170209	119170209	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	119170209	119170209	C	A	SNP	CBL	NM_005188.2	human	genbank	58_37c	+1	reviewed	silent	c.2439	p.V813	0.996	NULL	HMMPfam_UBA,HMMSmart_RING,HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_UBA,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF47473,superfamily_SSF55550,superfamily_SSF57850	-	no_errors
CDH19	0	genome.wustl.edu	37	18	64239349	64239349	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	18	64239349	64239349	G	A	SNP	CDH19	NM_021153.2	human	genbank	58_37c	-1	reviewed	silent	c.93	p.V31	0.000	NULL	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CHRFAM7A	0	genome.wustl.edu	37	15	30664509	30664509	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	15	30664509	30664509	A	C	SNP	CHRFAM7A	NM_139320.1	human	genbank	58_37c	-1	reviewed	missense	c.364	p.C122G	1.000	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
CNDP1	0	genome.wustl.edu	37	18	72245522	72245522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	18	72245522	72245522	G	A	SNP	CNDP1	NM_032649.5	human	genbank	58_37c	+1	reviewed	missense	c.1127	p.R376H	1.000	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases	PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases	-	no_errors
COL18A1	0	genome.wustl.edu	37	21	46925826	46925826	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	21	46925826	46925826	G	C	SNP	COL18A1	ENST00000400347	human	ensembl	58_37c	+1	known	missense	c.274	p.G92R	0.284	NULL	NULL	-	no_errors
COL9A2	0	genome.wustl.edu	37	1	40776400	40776400	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	40776400	40776400	T	A	SNP	COL9A2	NM_001852.3	human	genbank	58_37c	-1	reviewed	missense	c.670	p.I224F	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	34498201	34498201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	34498201	34498201	A	G	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.391	p.Y131H	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
CUBN	0	genome.wustl.edu	37	10	16960761	16960773	+	Frame_Shift_Del	DEL	TCCACTCCATCCC	TCCACTCCATCCC	-	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	TCCACTCCATCCC	TCCACTCCATCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	16960761	16960773	TCCACTCCATCCC	-	DEL	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.6860_6848	p.R2283fs	0.949:0.941:0.007:0.063:0.717:0.726:1.000:1.000:0.967:0.991:0.989:0.536:1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
DCC	0	genome.wustl.edu	37	18	50918111	50918111	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	18	50918111	50918111	G	T	SNP	DCC	NM_005215.3	human	genbank	58_37c	+1	reviewed	missense	c.2542	p.V848L	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Neogenin_C,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DICER1	0	genome.wustl.edu	37	14	95582139	95582139	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	95582139	95582139	G	C	SNP	DICER1	NM_030621.3	human	genbank	58_37c	-1	reviewed	missense	c.1772	p.S591C	1.000	superfamily_SSF52540	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III,HMMPfam_dsrm,HMMSmart_DSRM,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_PAZ,HMMPfam_dsRNA_bind,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF101690,superfamily_SSF52540,superfamily_SSF54768	-	no_errors
DLC1	0	genome.wustl.edu	37	8	12956004	12956005	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	8	12956004	12956005	-	T	INS	DLC1	NM_182643.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3071_3070	p.S1024fs	1.000:1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like	-	no_errors
DOCK3	0	genome.wustl.edu	37	3	51263131	51263131	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	51263131	51263131	G	C	SNP	DOCK3	NM_004947.3	human	genbank	58_37c	+1	validated	missense	c.1304	p.R435T	1.000	NULL	HMMSmart_SH3,superfamily_SH3,HMMPfam_Ded_cyto,HMMPfam_SH3_2	-	no_errors
DST	0	genome.wustl.edu	37	6	56473334	56473334	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	56473334	56473334	G	C	SNP	DST	ENST00000370769	human	ensembl	58_37c	-1	known	missense	c.5459	p.T1820S	0.999	HMMSmart_SM00250,superfamily_Plakin repeat	PatternScan_RIBOSOMAL_L23,HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand,superfamily_Plakin repeat	-	no_errors
EEF1D	0	genome.wustl.edu	37	8	144662368	144662368	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	8	144662368	144662368	A	G	SNP	EEF1D	NM_001130053.1	human	genbank	58_37c	-1	reviewed	silent	c.1719	p.D573	0.985	HMMPfam_EF1_GNE,superfamily_eEF-1beta-like	PatternScan_EF1BD_1,PatternScan_EF1BD_2,HMMPfam_EF1_GNE,superfamily_eEF-1beta-like,HMMPfam_EF-1_beta_acid	-	no_errors
ELFN2	0	genome.wustl.edu	37	22	37771398	37771398	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	37771398	37771398	G	T	SNP	ELFN2	NM_052906.3	human	genbank	58_37c	-1	validated	missense	c.177	p.D59E	1.000	superfamily_SSF52058	HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_FN3,superfamily_SSF52058	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	5162	5162	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	MT	5162	5162	T	C	SNP	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	silent	c.693	p.S231	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2140	2140	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	MT	2140	2140	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000250217	0	genome.wustl.edu	37	14	20010412	20010412	+	RNA	SNP	G	G	A	rs2845220	byHapMap	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	20010412	20010412	G	A	SNP	ENSG00000250217	ENST00000510298	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.046	-	-	-	no_errors
ETS2	0	genome.wustl.edu	37	21	40191520	40191520	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	21	40191520	40191520	T	A	SNP	ETS2	NM_005239.4	human	genbank	58_37c	+1	validated	nonsense	c.905	p.L302*	0.998	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SAM_homology,superfamily_SSF46785	-	no_errors
FAM182A	0	genome.wustl.edu	37	20	26063984	26063984	+	RNA	SNP	T	T	G	rs71189675	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	26063984	26063984	T	G	SNP	FAM182A	NR_026713.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.998	-	-	-	no_errors
FAM182A	0	genome.wustl.edu	37	20	26063987	26063987	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	26063987	26063987	G	C	SNP	FAM182A	NR_026713.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.999	-	-	-	no_errors
FAM5C	0	genome.wustl.edu	37	1	190067723	190067723	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	190067723	190067723	A	C	SNP	FAM5C	NM_199051.1	human	genbank	58_37c	-1	provisional	missense	c.1726	p.F576V	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
FATE1	0	genome.wustl.edu	37	X	150889973	150889973	+	Missense_Mutation	SNP	G	G	C	rs149441058	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	X	150889973	150889973	G	C	SNP	FATE1	NM_033085.2	human	genbank	58_37c	+1	reviewed	missense	c.341	p.R114P	0.016	NULL	NULL	-	no_errors
FCER1A	0	genome.wustl.edu	37	1	159273897	159273897	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	159273897	159273897	G	A	SNP	FCER1A	NM_002001.2	human	genbank	58_37c	+1	reviewed	missense	c.256	p.E86K	0.000	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
FREM3	0	genome.wustl.edu	37	4	144548913	144548913	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	4	144548913	144548913	C	A	SNP	FREM3	ENST00000329798	human	ensembl	58_37c	-1	known	missense	c.5276	p.G1759V	1.000	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29624068	29624068	+	Missense_Mutation	SNP	T	T	C	rs74684310	byFrequency	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	29624068	29624068	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.92	p.M31T	1.000	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29624081	29624081	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	29624081	29624081	A	T	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.105	p.L35F	0.996	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GLCCI1	0	genome.wustl.edu	37	7	8126035	8126035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	7	8126035	8126035	C	T	SNP	GLCCI1	NM_138426.2	human	genbank	58_37c	+1	validated	missense	c.1511	p.T504M	0.062	NULL	NULL	-	no_errors
HCFC2	0	genome.wustl.edu	37	12	104459971	104459971	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	104459971	104459971	G	C	SNP	HCFC2	NM_013320.2	human	genbank	58_37c	+1	reviewed	missense	c.190	p.V64L	1.000	superfamily_Galactose oxidase central domain	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
IGFALS	0	genome.wustl.edu	37	16	1840820	1840820	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	1840820	1840820	C	T	SNP	IGFALS	NM_004970.2	human	genbank	58_37c	-1	reviewed	silent	c.1599	p.L533	0.000	superfamily_SSF52047	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058	-	no_errors
IGHV1-46	0	genome.wustl.edu	37	14	106967297	106967297	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	106967297	106967297	C	A	SNP	IGHV1-46	ENST00000390622	human	ensembl	58_37c	-1	known	missense	c.103	p.A35S	0.025	HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
IQGAP3	0	genome.wustl.edu	37	1	156532441	156532441	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	156532441	156532441	T	A	SNP	IQGAP3	NM_178229.4	human	genbank	58_37c	-1	validated	missense	c.815	p.Q272L	0.986	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540	-	no_errors
KCNA4	0	genome.wustl.edu	37	11	30033730	30033730	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	30033730	30033730	A	T	SNP	KCNA4	NM_002233.2	human	genbank	58_37c	-1	reviewed	missense	c.496	p.Y166N	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,HMMPfam_K_channel_TID,superfamily_Voltage-gated potassium channels	-	no_errors
KCNJ10	0	genome.wustl.edu	37	1	160011189	160011189	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	160011189	160011189	A	G	SNP	KCNJ10	NM_002241.3	human	genbank	58_37c	-1	reviewed	silent	c.1134	p.N378	0.414	NULL	HMMPfam_IRK,superfamily_E set domains,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1602	0	genome.wustl.edu	37	12	50188850	50188850	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	50188850	50188850	C	A	SNP	KIAA1602	ENST00000433948	human	ensembl	58_37c	-1	known	nonsense	c.1936	p.E646*	0.950	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KRT76	0	genome.wustl.edu	37	12	53169205	53169205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	53169205	53169205	C	T	SNP	KRT76	NM_015848.4	human	genbank	58_37c	-1	reviewed	missense	c.782	p.S261N	0.770	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LCE3A	0	genome.wustl.edu	37	1	152595499	152595499	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	152595499	152595499	T	G	SNP	LCE3A	NM_178431.1	human	genbank	58_37c	-1	validated	silent	c.81	p.P27	0.002	NULL	PatternScan_PA2_HIS	-	no_errors
LOC100129096	0	genome.wustl.edu	37	8	70042446	70042446	+	RNA	SNP	T	T	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	8	70042446	70042446	T	A	SNP	LOC100129096	XR_037300.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100287226	0	genome.wustl.edu	37	19	22497241	22497241	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	22497241	22497241	T	C	SNP	LOC100287226	XM_002343636.1	human	genbank	58_37c	+1	model	missense	c.623	p.I208T	0.022	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100287827	0	genome.wustl.edu	37	11	64622246	64622246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	64622246	64622246	G	A	SNP	LOC100287827	XM_002343094.1	human	genbank	58_37c	+1	model	missense	c.271	p.V91I	0.997	NULL	NULL	-	no_errors
LOC100288406	0	genome.wustl.edu	37	12	92119	92119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	92119	92119	T	C	SNP	LOC100288406	XM_002343141.1	human	genbank	58_37c	+1	model	missense	c.143	p.V48A	0.000	NULL	NULL	-	pseudogene
LOC644988	0	genome.wustl.edu	37	17	20744542	20744546	+	RNA	DEL	CGCAC	CGCAC	-	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	CGCAC	CGCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	20744542	20744546	CGCAC	-	DEL	LOC644988	XR_017586.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.784:0.918:0.922:0.911:0.917	-	-	-	pseudogene
LOC728297	0	genome.wustl.edu	37	9	45362516	45362516	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	9	45362516	45362516	C	A	SNP	LOC728297	XM_001127111.2	human	genbank	58_37c	+1	model	missense	c.490	p.P164T	0.406	NULL	HMMPfam_7tm_1	-	no_errors
LOC90586	0	genome.wustl.edu	37	17	41020744	41020744	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	41020744	41020744	C	T	SNP	LOC90586	NR_002773.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.952	-	-	-	pseudogene
LRRC15	0	genome.wustl.edu	37	3	194081730	194081730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	194081730	194081730	C	T	SNP	LRRC15	NM_001135057.2	human	genbank	58_37c	-1	validated	missense	c.61	p.A21T	0.707	superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
LRRC66	0	genome.wustl.edu	37	4	52861775	52861775	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	4	52861775	52861775	A	T	SNP	LRRC66	NM_001024611.1	human	genbank	58_37c	-1	provisional	silent	c.1413	p.P471	0.000	NULL	HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
MMP9	0	genome.wustl.edu	37	20	44639885	44639885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	20	44639885	44639885	C	T	SNP	MMP9	NM_004994.2	human	genbank	58_37c	+1	reviewed	silent	c.753	p.D251	1.000	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,HMMPfam_PT,superfamily_Kringle-like,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MRPS5	0	genome.wustl.edu	37	2	95775737	95775737	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	95775737	95775737	T	C	SNP	MRPS5	NM_031902.3	human	genbank	58_37c	-1	reviewed	silent	c.327	p.G109	0.998	NULL	HMMPfam_Ribosomal_S5_C,HMMPfam_Ribosomal_S5,PatternScan_RIBOSOMAL_S5,superfamily_Ribosomal protein S5 domain 2-like,superfamily_dsRNA-binding domain-like	-	no_errors
NOS1	0	genome.wustl.edu	37	12	117691526	117691526	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	117691526	117691526	G	T	SNP	NOS1	NM_000620.2	human	genbank	58_37c	-1	reviewed	silent	c.2565	p.S855	0.016	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins	HMMPfam_NAD_binding_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
NOTCH4	0	genome.wustl.edu	37	6	32188550	32188550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	32188550	32188550	C	A	SNP	NOTCH4	NM_004557.3	human	genbank	58_37c	-1	reviewed	missense	c.905	p.C302F	1.000	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,HMMSmart_SM00179,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
OR8B2	0	genome.wustl.edu	37	11	124252388	124252388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	124252388	124252388	G	A	SNP	OR8B2	NM_001005468.1	human	genbank	58_37c	-1	provisional	silent	c.852	p.L284	0.460	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
P2RX5	0	genome.wustl.edu	37	17	3593780	3593780	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	3593780	3593780	C	G	SNP	P2RX5	NM_002561.2	human	genbank	58_37c	-1	reviewed	missense	c.474	p.L158F	0.000	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
PAPPA2	0	genome.wustl.edu	37	1	176564589	176564589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	176564589	176564589	C	T	SNP	PAPPA2	NM_020318.2	human	genbank	58_37c	+1	validated	missense	c.1849	p.R617C	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain,PatternScan_N6_MTASE,PatternScan_ZINC_PROTEASE,HMMSmart_SM00560,HMMPfam_Peptidase_M43,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Complement control module/SCR domain,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
PCDHA1	0	genome.wustl.edu	37	5	140167566	140167566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	140167566	140167566	C	T	SNP	PCDHA1	NM_018900.2	human	genbank	58_37c	+1	reviewed	missense	c.1691	p.A564V	0.003	superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCSK6	0	genome.wustl.edu	37	15	101910615	101910615	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	15	101910615	101910615	G	T	SNP	PCSK6	ENST00000331826	human	ensembl	58_37c	-1	known	nonsense	c.1643	p.S548*	0.857	HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,HMMSmart_SM00181,HMMSmart_SM00261,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors,superfamily_Growth factor receptor domain	-	no_errors
PDGFB	0	genome.wustl.edu	37	22	39621808	39621808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	39621808	39621808	G	A	SNP	PDGFB	NM_002608.2	human	genbank	58_37c	-1	reviewed	missense	c.646	p.R216C	1.000	NULL	HMMPfam_PDGF,HMMSmart_SM00141,PatternScan_PDGF_1,HMMPfam_PDGF_N,superfamily_Cystine-knot cytokines	-	no_errors
PEX1	0	genome.wustl.edu	37	7	92122328	92122328	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	7	92122328	92122328	G	C	SNP	PEX1	NM_000466.2	human	genbank	58_37c	-1	reviewed	missense	c.3146	p.A1049G	1.000	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_ADC-like,HMMPfam_PEX-1N,HMMPfam_PEX-2N,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Cdc48 domain 2-like	-	no_errors
PEX26	0	genome.wustl.edu	37	22	18562666	18562666	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	22	18562666	18562666	G	C	SNP	PEX26	NM_001127649.1	human	genbank	58_37c	+1	reviewed	missense	c.257	p.C86S	1.000	HMMPfam_Pex26	HMMPfam_Pex26	-	no_errors
PPP1R15B	0	genome.wustl.edu	37	1	204379798	204379798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	204379798	204379798	C	G	SNP	PPP1R15B	NM_032833.3	human	genbank	58_37c	-1	validated	missense	c.742	p.V248L	0.006	HMMPfam_CReP_N	HMMPfam_CReP_N,HMMPfam_PP1c_bdg	-	no_errors
PRAP1	0	genome.wustl.edu	37	10	135165568	135165568	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	135165568	135165568	G	T	SNP	PRAP1	NM_145202.4	human	genbank	58_37c	+1	validated	silent	c.186	p.L62	0.000	NULL	NULL	-	no_errors
PRAP1	0	genome.wustl.edu	37	10	135165631	135165631	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	10	135165631	135165631	C	T	SNP	PRAP1	NM_145202.4	human	genbank	58_37c	+1	validated	silent	c.249	p.G83	0.000	NULL	NULL	-	no_errors
PTPRB	0	genome.wustl.edu	37	12	70970306	70970306	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	12	70970306	70970306	C	G	SNP	PTPRB	NM_001109754.1	human	genbank	58_37c	-1	reviewed	missense	c.2698	p.G900R	0.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Ricin_B_lectin,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Ricin B-like lectins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RCOR2	0	genome.wustl.edu	37	11	63681469	63681469	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	63681469	63681469	G	T	SNP	RCOR2	NM_173587.3	human	genbank	58_37c	-1	validated	missense	c.848	p.T283K	0.994	NULL	HMMPfam_ELM2,HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
RHBDF2	0	genome.wustl.edu	37	17	74469974	74469974	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	74469974	74469974	C	A	SNP	RHBDF2	NM_024599.3	human	genbank	58_37c	-1	validated	nonsense	c.1672	p.E558*	1.000	NULL	HMMPfam_Rhomboid	-	no_errors
RPLP0P2	0	genome.wustl.edu	37	11	61404585	61404585	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	61404585	61404585	C	G	SNP	RPLP0P2	NR_002775.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
RRN3P2	0	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	29110458	29110458	T	C	SNP	RRN3P2	ENST00000427965	human	ensembl	58_37c	+1	known	missense	c.1123	p.W375R	0.991	HMMPfam_RRN3	HMMPfam_RRN3	-	no_stop_codon
RTN4	0	genome.wustl.edu	37	2	55252437	55252437	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	55252437	55252437	C	G	SNP	RTN4	NM_020532.4	human	genbank	58_37c	-1	reviewed	missense	c.2798	p.S933T	0.000	NULL	HMMPfam_Reticulon	-	no_errors
RYR1	0	genome.wustl.edu	37	19	38979876	38979876	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	38979876	38979876	G	T	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	missense	c.5607	p.E1869D	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCUBE3	0	genome.wustl.edu	37	6	35213839	35213839	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	6	35213839	35213839	C	T	SNP	SCUBE3	NM_152753.2	human	genbank	58_37c	+1	provisional	silent	c.2718	p.A906	0.992	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
SETD2	0	genome.wustl.edu	37	3	47164556	47164556	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	3	47164556	47164556	T	G	SNP	SETD2	NM_014159.6	human	genbank	58_37c	-1	reviewed	missense	c.1570	p.N524H	1.000	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_Ferritin-like,HMMPfam_SRI_2,PatternScan_ADH_IRON_1,superfamily_SET domain	-	no_errors
SHISA7	0	genome.wustl.edu	37	19	55952018	55952018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	55952018	55952018	C	T	SNP	SHISA7	ENST00000416792	human	ensembl	58_37c	-1	known	missense	c.260	p.R87H	0.880	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SLC36A1	0	genome.wustl.edu	37	5	150846797	150846797	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	150846797	150846797	G	T	SNP	SLC36A1	NM_078483.2	human	genbank	58_37c	+1	reviewed	nonsense	c.457	p.G153*	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC38A7	0	genome.wustl.edu	37	16	58712260	58712260	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	58712260	58712260	C	A	SNP	SLC38A7	NM_018231.1	human	genbank	58_37c	-1	provisional	missense	c.588	p.E196D	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC9A3	0	genome.wustl.edu	37	5	485334	485334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	5	485334	485334	C	T	SNP	SLC9A3	NM_004174.2	human	genbank	58_37c	-1	validated	missense	c.688	p.V230M	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger,PatternScan_WD_REPEATS_1	-	no_errors
SPTB	0	genome.wustl.edu	37	14	65267588	65267588	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	14	65267588	65267588	T	G	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	splice_site	c.764-2	e7-2	1.000	-	-	-	no_errors
STAM2	0	genome.wustl.edu	37	2	153000517	153000517	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	2	153000517	153000517	T	A	SNP	STAM2	NM_005843.4	human	genbank	58_37c	-1	reviewed	missense	c.528	p.L176F	1.000	HMMPfam_UIM,HMMSmart_SM00726	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_VHS,HMMPfam_UIM,HMMSmart_SM00726,superfamily_ENTH/VHS domain,HMMSmart_SM00288	-	no_errors
TCHH	0	genome.wustl.edu	37	1	152080781	152080781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	152080781	152080781	G	A	SNP	TCHH	NM_007113.2	human	genbank	58_37c	-1	provisional	missense	c.4912	p.R1638C	0.206	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
TCHH	0	genome.wustl.edu	37	1	152081930	152081930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	1	152081930	152081930	C	T	SNP	TCHH	NM_007113.2	human	genbank	58_37c	-1	provisional	missense	c.3763	p.D1255N	0.001	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
TMEM120A	0	genome.wustl.edu	37	7	75616520	75616547	+	Frame_Shift_Del	DEL	GTGAAACTTGTGGTGCACAACCCTCAGG	GTGAAACTTGTGGTGCACAACCCTCAGG	-	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	GTGAAACTTGTGGTGCACAACCCTCAGG	GTGAAACTTGTGGTGCACAACCCTCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	7	75616520	75616547	GTGAAACTTGTGGTGCACAACCCTCAGG	-	DEL	TMEM120A	NM_031925.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1002_975	p.L326fs	0.958:1.000:1.000:1.000:1.000:0.998:0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:1.000:0.994:0.049:0.993:0.999:0.961:0.975:0.973:0.969:1.000:1.000:0.998	HMMPfam_TMPIT	HMMPfam_TMPIT	-	pseudogene
TMEM218	0	genome.wustl.edu	37	11	124971139	124971140	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	124971139	124971140	-	A	INS	TMEM218	NM_001080546.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.171_170	p.R59fs	0.993:0.998	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	byCluster	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	17	7578406	7578406	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.524	p.R175H	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
USP28	0	genome.wustl.edu	37	11	113704197	113704197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	11	113704197	113704197	G	A	SNP	USP28	NM_020886.2	human	genbank	58_37c	-1	validated	missense	c.704	p.P235L	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_CPSASE_2,superfamily_UBA-like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
ZNF44	0	genome.wustl.edu	37	19	12384316	12384316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	12384316	12384316	G	A	SNP	ZNF44	NM_016264.3	human	genbank	58_37c	-1	validated	missense	c.754	p.P252S	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF552	0	genome.wustl.edu	37	19	58319711	58319711	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	19	58319711	58319711	G	T	SNP	ZNF552	NM_024762.3	human	genbank	58_37c	-1	validated	missense	c.921	p.H307Q	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZP2	0	genome.wustl.edu	37	16	21221500	21221500	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A244-01A-11D-A167-09	TCGA-E9-A244-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9edf63e8-ae94-4b2f-8521-b56dadc21cd5	c067e16d-40af-44b1-bb55-b8c71ed021d3	16	21221500	21221500	G	A	SNP	ZP2	NM_003460.1	human	genbank	58_37c	-1	reviewed	silent	c.165	p.C55	0.573	NULL	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors
