Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS8	0	genome.wustl.edu	37	11	130286095	130286095	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	130286095	130286095	G	A	SNP	ADAMTS8	NM_007037.4	human	genbank	58_37c	-1	reviewed	silent	c.1227	p.S409	0.394	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ATM	0	genome.wustl.edu	37	11	108218045	108218045	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	108218045	108218045	A	G	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	missense	c.8624	p.N2875S	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ATN1	0	genome.wustl.edu	37	12	7045892	7045894	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	12	7045892	7045894	CAG	-	DEL	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1462_1464	p.Q491in_frame_del	0.834:0.709:0.730	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
CD79B	0	genome.wustl.edu	37	17	62007651	62007651	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	62007651	62007651	G	A	SNP	CD79B	NM_001039933.1	human	genbank	58_37c	-1	reviewed	silent	c.216	p.S72	0.000	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_ITAM,HMMSmart_SM00077,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
COL5A3	0	genome.wustl.edu	37	19	10087234	10087234	+	Silent	SNP	C	C	T	rs146470482	byFrequency	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	19	10087234	10087234	C	T	SNP	COL5A3	NM_015719.3	human	genbank	58_37c	-1	reviewed	silent	c.3342	p.P1114	0.943	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
COL6A5	0	genome.wustl.edu	37	3	130202881	130202881	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	3	130202881	130202881	G	C	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.7577	p.W2526S	0.181	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
CRIPAK	0	genome.wustl.edu	37	4	1388622	1388623	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	4	1388622	1388623	-	CA	INS	CRIPAK	NM_175918.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.323_324	p.C110fs	0.001:0.028	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
CUBN	0	genome.wustl.edu	37	10	16942845	16942845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	10	16942845	16942845	G	A	SNP	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	missense	c.8189	p.T2730I	0.191	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
DCC	0	genome.wustl.edu	37	18	50450083	50450083	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	18	50450083	50450083	G	C	SNP	DCC	NM_005215.3	human	genbank	58_37c	+1	reviewed	missense	c.704	p.G235A	1.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Neogenin_C,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DDHD1	0	genome.wustl.edu	37	14	53619480	53619481	+	In_Frame_Ins	INS	-	-	GCCGCC	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	14	53619480	53619481	-	GCCGCC	INS	DDHD1	NM_030637.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.337_336	p.112in_frame_insGG	0.234:0.997	NULL	HMMPfam_DDHD	-	no_errors
DPYSL3	0	genome.wustl.edu	37	5	146777319	146777319	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	146777319	146777319	G	T	SNP	DPYSL3	NM_001387.2	human	genbank	58_37c	-1	validated	silent	c.1371	p.G457	1.000	NULL	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537243	88537243	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	4	88537243	88537243	C	A	SNP	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	missense	c.3429	p.D1143E	0.451	NULL	NULL	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537249	88537249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	4	88537249	88537249	T	C	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1835	p.V612A	0.924	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
ENSG00000210049	0	genome.wustl.edu	37	MT	622	622	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	MT	622	622	G	A	SNP	ENSG00000210049	ENST00000387314	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000212907	0	genome.wustl.edu	37	MT	10662	10662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	MT	10662	10662	G	A	SNP	ENSG00000212907	ENST00000361335	human	ensembl	58_37c	+1	known	missense	c.193	p.V65I	NULL	HMMPfam_Oxidored_q2	HMMPfam_Oxidored_q2	-	mismatch_between_exon_seq_and_reference
ENSG00000213154	0	genome.wustl.edu	37	10	134228829	134228830	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	10	134228829	134228830	CC	-	DEL	ENSG00000213154	ENST00000392633	human	ensembl	58_37c	+1	known	frame_shift_del	c.140	p.T47fs	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000249033	0	genome.wustl.edu	37	9	67917596	67917598	+	RNA	DEL	GAG	GAG	-	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	67917596	67917598	GAG	-	DEL	ENSG00000249033	ENST00000513863	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.419:0.415:0.412	-	-	-	no_errors
ENSG00000249720	0	genome.wustl.edu	37	15	74365424	74365424	+	RNA	SNP	C	C	T	rs2740409	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	15	74365424	74365424	C	T	SNP	ENSG00000249720	ENST00000512896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000250002	0	genome.wustl.edu	37	8	128940575	128940576	+	RNA	INS	-	-	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	8	128940575	128940576	-	C	INS	ENSG00000250002	ENST00000507144	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.158:0.172	-	-	-	no_errors
ENTPD6	0	genome.wustl.edu	37	20	25205861	25205861	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	20	25205861	25205861	C	G	SNP	ENTPD6	NM_001247.2	human	genbank	58_37c	+1	reviewed	missense	c.1264	p.Q422E	0.026	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
FAM86B2	0	genome.wustl.edu	37	8	12283440	12283440	+	Silent	SNP	A	A	G	rs1047475	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	8	12283440	12283440	A	G	SNP	FAM86B2	NM_001137610.1	human	genbank	58_37c	-1	predicted	silent	c.951	p.Y317	0.108	NULL	HMMPfam_Methyltransf_16,superfamily_SSF53335	-	no_errors
FLG	0	genome.wustl.edu	37	1	152284604	152284604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	152284604	152284604	C	A	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.2758	p.A920S	0.000	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
HEATR5B	0	genome.wustl.edu	37	2	37234446	37234446	+	Silent	SNP	A	A	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	2	37234446	37234446	A	C	SNP	HEATR5B	NM_019024.1	human	genbank	58_37c	-1	validated	silent	c.4524	p.G1508	0.296	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
HSDL2	0	genome.wustl.edu	37	9	115200812	115200812	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	115200812	115200812	A	T	SNP	HSDL2	NM_032303.3	human	genbank	58_37c	+1	provisional	nonsense	c.700	p.K234*	0.999	NULL	HMMPfam_adh_short,PatternScan_ADH_SHORT,HMMPfam_SCP2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Sterol carrier protein SCP	-	no_errors
ILF3	0	genome.wustl.edu	37	19	10798193	10798193	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	19	10798193	10798193	C	G	SNP	ILF3	NM_017620.2	human	genbank	58_37c	+1	reviewed	missense	c.2243	p.S748C	1.000	NULL	HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like	-	no_errors
ITGBL1	0	genome.wustl.edu	37	13	102344973	102344973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	13	102344973	102344973	G	A	SNP	ITGBL1	NM_004791.1	human	genbank	58_37c	+1	provisional	missense	c.1054	p.G352R	0.999	HMMPfam_EGF_2,superfamily_SSF57196	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196	-	no_errors
KIAA0947	0	genome.wustl.edu	37	5	5457497	5457497	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	5457497	5457497	G	T	SNP	KIAA0947	NM_015325.1	human	genbank	58_37c	+1	validated	silent	c.744	p.T248	0.000	NULL	NULL	-	no_errors
KRT34	0	genome.wustl.edu	37	17	39535625	39535625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	39535625	39535625	G	T	SNP	KRT34	NM_021013.3	human	genbank	58_37c	-1	reviewed	missense	c.982	p.L328M	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LCE4A	0	genome.wustl.edu	37	1	152681680	152681681	+	In_Frame_Ins	INS	-	-	AGCTCTGGGGGCTGCTGT	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	152681680	152681681	-	AGCTCTGGGGGCTGCTGT	INS	LCE4A	NM_178356.2	human	genbank	58_37c	+1	validated	in_frame_ins	c.129_130	p.47in_frame_insCCSSGG	0.030:0.049	NULL	PatternScan_EGF_1	-	no_errors
LOC100131851	0	genome.wustl.edu	37	7	39873126	39873127	+	In_Frame_Ins	INS	-	-	GCG	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	39873126	39873127	-	GCG	INS	LOC100131851	XM_001717865.2	human	genbank	58_37c	+1	model	in_frame_ins	c.371_372	p.125in_frame_ins	0.002:0.000	NULL	NULL	-	no_errors
LRRTM1	0	genome.wustl.edu	37	2	80530639	80530639	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	2	80530639	80530639	G	T	SNP	LRRTM1	NM_178839.4	human	genbank	58_37c	-1	validated	nonsense	c.306	p.C102*	1.000	HMMPfam_LRR_1,superfamily_SSF52058	HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
MAML3	0	genome.wustl.edu	37	4	140811075	140811075	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	4	140811075	140811075	C	T	SNP	MAML3	NM_018717.4	human	genbank	58_37c	-1	validated	silent	c.1515	p.Q505	0.993	NULL	HMMPfam_MamL-1	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17081462	17081462	+	RNA	SNP	C	C	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	17081462	17081462	C	T	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.006	-	-	-	pseudogene
MST1P9	0	genome.wustl.edu	37	1	17085780	17085780	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	17085780	17085780	G	A	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
MUC5B	0	genome.wustl.edu	37	11	1265475	1265475	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	1265475	1265475	G	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.7374	p.P2458	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYO6	0	genome.wustl.edu	37	6	76540247	76540247	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	6	76540247	76540247	C	T	SNP	MYO6	NM_004999.3	human	genbank	58_37c	+1	reviewed	missense	c.376	p.H126Y	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NALCN	0	genome.wustl.edu	37	13	101936304	101936304	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	13	101936304	101936304	G	C	SNP	NALCN	NM_052867.2	human	genbank	58_37c	-1	validated	missense	c.1114	p.R372G	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
ODZ4	0	genome.wustl.edu	37	11	78440581	78440581	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	78440581	78440581	C	T	SNP	ODZ4	NM_001098816.2	human	genbank	58_37c	-1	validated	silent	c.3246	p.P1082	1.000	NULL	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_TolB_C,superfamily_SSF57196	-	no_errors
PIGO	0	genome.wustl.edu	37	9	35095509	35095509	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	35095509	35095509	G	A	SNP	PIGO	NM_032634.2	human	genbank	58_37c	-1	reviewed	silent	c.54	p.Y18	0.099	NULL	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	-	no_errors
PLBD2	0	genome.wustl.edu	37	12	113825554	113825554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	12	113825554	113825554	A	G	SNP	PLBD2	NM_173542.3	human	genbank	58_37c	+1	validated	missense	c.1445	p.N482S	1.000	HMMPfam_Phospholip_B	HMMPfam_Phospholip_B	-	no_errors
PLXNA4	0	genome.wustl.edu	37	7	131848966	131848966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	131848966	131848966	C	T	SNP	PLXNA4	NM_020911.1	human	genbank	58_37c	-1	validated	missense	c.4435	p.G1479S	0.997	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
PPP1R9A	0	genome.wustl.edu	37	7	94540068	94540068	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	94540068	94540068	C	A	SNP	PPP1R9A	NM_017650.2	human	genbank	58_37c	+1	validated	missense	c.643	p.P215T	0.953	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
QSER1	0	genome.wustl.edu	37	11	32955077	32955078	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	11	32955077	32955078	-	A	INS	QSER1	NM_001076786.1	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.1886_1887	p.E632fs	0.958:0.967	NULL	NULL	-	no_errors
RALY	0	genome.wustl.edu	37	20	32664864	32664865	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	20	32664864	32664865	-	CAG	INS	RALY	NM_016732.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.689_690	p.231in_frame_insS	0.001:0.001	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RB1CC1	0	genome.wustl.edu	37	8	53569852	53569852	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	8	53569852	53569852	T	C	SNP	RB1CC1	NM_014781.4	human	genbank	58_37c	-1	reviewed	missense	c.2537	p.N846S	0.995	NULL	HMMPfam_ATG11,superfamily_SSF54236	-	no_errors
RNF215	0	genome.wustl.edu	37	22	30775717	30775718	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	22	30775717	30775718	CA	-	DEL	RNF215	NM_001017981.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.1094_1093	p.C365fs	1.000:1.000	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850	HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
SAMD11	0	genome.wustl.edu	37	1	874816	874817	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	874816	874817	-	T	INS	SAMD11	NM_152486.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.682_683	p.P228fs	0.137:0.176	NULL	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
SEMA5A	0	genome.wustl.edu	37	5	9108318	9108318	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	5	9108318	9108318	G	A	SNP	SEMA5A	NM_003966.2	human	genbank	58_37c	-1	reviewed	silent	c.2007	p.C669	0.092	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold	-	no_errors
SERPINE2	0	genome.wustl.edu	37	2	224863029	224863031	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	2	224863029	224863031	TTG	-	DEL	SERPINE2	NM_001136530.1	human	genbank	58_37c	-1	validated	in_frame_del	c.326_324	p.N108in_frame_del	1.000:1.000:1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SHROOM4	0	genome.wustl.edu	37	X	50350728	50350729	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	X	50350728	50350729	-	TCC	INS	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3414_3413	p.1142in_frame_insE	0.000:0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC16A9	0	genome.wustl.edu	37	10	61412689	61412689	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	10	61412689	61412689	G	A	SNP	SLC16A9	NM_194298.2	human	genbank	58_37c	-1	validated	silent	c.1371	p.T457	0.991	superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC9A10	0	genome.wustl.edu	37	3	111996653	111996653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	3	111996653	111996653	G	T	SNP	SLC9A10	NM_183061.1	human	genbank	58_37c	-1	validated	missense	c.373	p.H125N	0.991	HMMPfam_Na_H_Exchanger	HMMPfam_cNMP_binding,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,superfamily_cAMP-binding domain-like,PatternScan_WD_REPEATS_1,superfamily_Voltage-gated potassium channels	-	no_errors
SNX30	0	genome.wustl.edu	37	9	115567232	115567232	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	115567232	115567232	T	C	SNP	SNX30	NM_001012994.1	human	genbank	58_37c	+1	validated	silent	c.333	p.Y111	0.996	HMMPfam_PX,HMMSmart_PX,superfamily_PX	HMMPfam_PX,HMMSmart_PX,superfamily_PX	-	no_errors
SSH2	0	genome.wustl.edu	37	17	28022486	28022486	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	17	28022486	28022486	G	A	SNP	SSH2	NM_033389.2	human	genbank	58_37c	-1	reviewed	silent	c.267	p.N89	1.000	NULL	HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
TNR	0	genome.wustl.edu	37	1	175372511	175372511	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	175372511	175372511	G	A	SNP	TNR	NM_003285.2	human	genbank	58_37c	-1	validated	silent	c.741	p.D247	1.000	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
TTC38	0	genome.wustl.edu	37	22	46685729	46685729	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	22	46685729	46685729	G	A	SNP	TTC38	NM_017931.2	human	genbank	58_37c	+1	validated	missense	c.1249	p.V417I	0.971	NULL	superfamily_SSF48452	-	no_errors
TTC39C	0	genome.wustl.edu	37	18	21698089	21698089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	18	21698089	21698089	G	A	SNP	TTC39C	NM_001135993.1	human	genbank	58_37c	+1	validated	missense	c.1079	p.G360D	1.000	HMMPfam_Deme6,superfamily_TPR-like	HMMPfam_Deme6,superfamily_TPR-like	-	no_errors
UBAC2	0	genome.wustl.edu	37	13	100020110	100020110	+	Missense_Mutation	SNP	G	G	A	rs150911743	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	13	100020110	100020110	G	A	SNP	UBAC2	NM_001144072.1	human	genbank	58_37c	+1	validated	missense	c.877	p.G293S	0.229	NULL	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165	-	no_errors
WASH7P	0	genome.wustl.edu	37	1	16977	16977	+	RNA	SNP	G	A	A	rs77161726	byFrequency	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	1	16977	16977	G	A	SNP	WASH7P	NR_024540.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
WBSCR28	0	genome.wustl.edu	37	7	73279928	73279928	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	7	73279928	73279928	G	T	SNP	WBSCR28	NM_182504.3	human	genbank	58_37c	+1	validated	missense	c.523	p.V175L	0.009	NULL	NULL	-	no_errors
ZBTB5	0	genome.wustl.edu	37	9	37441075	37441075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1J6-01A-11D-A188-09	TCGA-EW-A1J6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d95c5cb1-d081-47fa-8ac0-1ade7652a0af	59bd462d-a2b2-4736-9a1f-f5658c82e15f	9	37441075	37441075	G	C	SNP	ZBTB5	NM_014872.2	human	genbank	58_37c	-1	validated	missense	c.1474	p.Q492E	1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
