Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR2G3	81469	broad.mit.edu	37	1	247769085	247769085	+	Silent	SNP	C	G	G			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr1:247769085C>G	uc010pyz.1	+	1	198	c.198C>G	c.(196-198)CTC>CTG	p.L66L		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCAGCAACCTCTCTTTACTGG	0.458000													4	324	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	G	G			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr10:48968566A>G	uc001jgc.1	+	3		c.1234A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACAGGATAACAAACTGGAAAA	0.284000													3	24	---	---	---	---	0	0	6.4e-05	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													5	65	---	---	---	---	0	0	1.23904e-05	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293827	71293827	+	Silent	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr11:71293827G>A	uc001oqu.2	-	1	95	c.57C>T	c.(55-57)TCC>TCT	p.S19S		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	19						keratin filament					0						CCCCACTGCCGGAGCCACAGC	0.632000													18	68	---	---	---	---	0	0	0.000132079	0	0
Unknown	0	broad.mit.edu	37	11	124121061	124121061	+	IGR	SNP	C	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr11:124121061C>A								OR8G2 (24751 upstream) : OR8D1 (58676 downstream)																							CCAGCCTGACCATCCTTTGCT	0.458000													31	30	---	---	---	---	8.88839e-20	1.67745e-18	0.000339439	1	0
LRTM2	654429	broad.mit.edu	37	12	1943779	1943779	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr12:1943779C>T	uc001qjt.2	+	5	1811	c.1005C>T	c.(1003-1005)TAC>TAT	p.Y335Y	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Silent_p.Y335Y|LRTM2_uc010sdx.1_Silent_p.Y335Y|LRTM2_uc001qjv.2_Silent_p.Y97Y	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	335	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GCTGCATCTACGCCTCCCTCA	0.637000													40	40	---	---	---	---	0	0	0.000191422	0	0
KRT5	3852	broad.mit.edu	37	12	52913586	52913586	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr12:52913586C>T	uc001san.2	-	1	658	c.495G>A	c.(493-495)AGG>AGA	p.R165R	KRT5_uc009zmh.2_Silent_p.R165R	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	165	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTCCTCGGTCCTCACCCTCT	0.522000													7	148	---	---	---	---	0	0	0.000274275	0	0
STAB2	55576	broad.mit.edu	37	12	104100607	104100607	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr12:104100607G>T	uc001tjw.2	+	38	4220	c.4034G>T	c.(4033-4035)TGC>TTC	p.C1345F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1345	Extracellular (Potential).|Laminin EGF-like 1.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GGCCCCCAATGCCAGCCCTGC	0.547000													21	45	---	---	---	---	5.26018e-13	9.522e-12	0.000229342	1	0
Unknown	0	broad.mit.edu	37	14	28733813	28733813	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr14:28733813G>A	uc001wqd.2	+	1	194	c.54G>A	c.(52-54)TGG>TGA	p.W18*						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		AGGGCTCCTGGGTAGAATTGC	0.592000													18	26	---	---	---	---	0	0	7.07596e-05	0	0
AGBL1	123624	broad.mit.edu	37	15	86838596	86838596	+	Silent	SNP	G	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr15:86838596G>C	uc002blz.1	+	16	2273	c.2193G>C	c.(2191-2193)ACG>ACC	p.T731T	AGBL1_uc002bma.1_Silent_p.T462T|AGBL1_uc002bmb.1_Silent_p.T425T	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	731					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGACCATCACGGCCATGCCTG	0.498000													3	69	---	---	---	---	0	0	6.4e-05	0	0
UMOD	7369	broad.mit.edu	37	16	20355366	20355366	+	Silent	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr16:20355366G>A	uc002dgz.2	-	6	1440	c.1311C>T	c.(1309-1311)ACC>ACT	p.T437T	UMOD_uc002dha.2_Silent_p.T437T|UMOD_uc002dhb.2_Silent_p.T470T	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	437	ZP.				cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						GCTGTAGGGCGGTCTTCAGGC	0.537000													22	43	---	---	---	---	0	0	0.000229342	0	0
MAP3K3	4215	broad.mit.edu	37	17	61759152	61759152	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr17:61759152C>T	uc002jbg.2	+	7	848	c.529C>T	c.(529-531)CCT>TCT	p.P177S	MAP3K3_uc002jbe.2_Missense_Mutation_p.P208S|MAP3K3_uc002jbf.2_Missense_Mutation_p.P208S|MAP3K3_uc002jbh.2_Missense_Mutation_p.P208S|MAP3K3_uc010wpo.1_Missense_Mutation_p.P92S|MAP3K3_uc010wpp.1_Missense_Mutation_p.P177S	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	177					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CCGAAGCTCACCTCCCCCTGG	0.607000													43	62	---	---	---	---	0	0	0.000374591	0	0
RIT2	6014	broad.mit.edu	37	18	40503596	40503596	+	Missense_Mutation	SNP	T	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr18:40503596T>A	uc002lav.2	-	4	540	c.367A>T	c.(367-369)ACC>TCC	p.T123S	RIT2_uc010dnf.2_Missense_Mutation_p.T123S	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	123					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						ATTTCATAGGTGTGGCGGACC	0.493000													64	111	---	---	---	---	0	0	0.000147903	0	0
ZNF99	7652	broad.mit.edu	37	19	22940429	22940429	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr19:22940429C>G	uc010xrh.1	-	5	2009	c.2009G>C	c.(2008-2010)TGC>TCC	p.C670S		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTCACATTTGCAGGGTTTCTC	0.358000													9	65	---	---	---	---	0	0	0.00010058	0	0
CEACAM8	1088	broad.mit.edu	37	19	43093666	43093666	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr19:43093666C>G	uc002oud.2	-	3	748	c.646G>C	c.(646-648)GAA>CAA	p.E216Q	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	216	Ig-like C2-type 1.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				TTCTGTATTTCACATTCATAG	0.537000													4	235	---	---	---	---	0	0	0.00024832	0	0
GRIN2D	2906	broad.mit.edu	37	19	48908178	48908178	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr19:48908178G>A	uc002pjc.3	+	3	741	c.653G>A	c.(652-654)CGC>CAC	p.R218H		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	218	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	TGGGAGCACCGCGGAGCGCTG	0.682000													10	131	---	---	---	---	0	0	3.86212e-05	0	0
PLCL1	5334	broad.mit.edu	37	2	198949565	198949565	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr2:198949565G>A	uc010fsp.2	+	2	1615	c.1324G>A	c.(1324-1326)GTT>ATT	p.V442I	PLCL1_uc002uuv.3_Missense_Mutation_p.V363I	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	442	PI-PLC X-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	CTGTCGAAGCGTTGAACTCGA	0.408000													38	30	---	---	---	---	0	0	0.000109025	0	0
COL6A3	1293	broad.mit.edu	37	2	238280733	238280733	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr2:238280733C>A	uc002vwl.2	-	9	4212	c.3927G>T	c.(3925-3927)CAG>CAT	p.Q1309H	COL6A3_uc002vwo.2_Missense_Mutation_p.Q1103H|COL6A3_uc010znj.1_Missense_Mutation_p.Q702H|COL6A3_uc002vwq.2_Missense_Mutation_p.Q1103H|COL6A3_uc002vwr.2_Missense_Mutation_p.Q902H	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1309	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCACGTTGATCTGCCGCCCTC	0.617000													26	80	---	---	---	---	3.65163e-15	6.7479e-14	0.000147802	1	0
PRIC285	85441	broad.mit.edu	37	20	62198473	62198473	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr20:62198473C>T	uc002yfm.2	-	7	3130	c.2238G>A	c.(2236-2238)ACG>ACA	p.T746T	PRIC285_uc002yfl.1_Silent_p.T177T	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	746					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CAATGGCGTCCGTGCAGCGGT	0.662000													39	72	---	---	---	---	0	0	0.000374591	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978232	45978232	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr21:45978232T>C	uc002zfj.1	-	1	412	c.367A>G	c.(367-369)ATC>GTC	p.I123V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	123	11.|18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						acacagcagatgggcttgcag	0.259000													5	306	---	---	---	---	0	0	0.000274275	0	0
COL6A2	1292	broad.mit.edu	37	21	47552224	47552224	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr21:47552224G>A	uc002zia.1	+	28	2900	c.2818G>A	c.(2818-2820)GCA>ACA	p.A940T	COL6A2_uc002zib.1_Missense_Mutation_p.A346T|COL6A2_uc002zic.1_Silent_p.T14T|COL6A2_uc010gqe.1_RNA	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	940	Nonhelical region.|VWFA 3.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CCGGAGGCACGCAGAGCTGTC	0.657000													9	19	---	---	---	---	0	0	0.00010058	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058637	67058637	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr3:67058637T>C	uc003dmy.2	+	4	1687	c.1634T>C	c.(1633-1635)GTT>GCT	p.V545A	KBTBD8_uc011bfv.1_Missense_Mutation_p.V103A	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	545	Kelch 5.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		CAAGTGACTGTTGAAGAACAC	0.403000													9	79	---	---	---	---	0	0	0.000442599	0	0
ZIC1	7545	broad.mit.edu	37	3	147128058	147128058	+	Silent	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr3:147128058G>A	uc003ewe.2	+	1	878	c.159G>A	c.(157-159)TCG>TCA	p.S53S		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	53					behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						ACCCCAGTTCGCACGAGCTGG	0.721000													22	33	---	---	---	---	0	0	0.000229342	0	0
HTR3C	170572	broad.mit.edu	37	3	183777419	183777419	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr3:183777419C>T	uc003fmk.2	+	7	950	c.916C>T	c.(916-918)CCC>TCC	p.P306S		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	306	Extracellular (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CAGTGGCACCCCCCTCATCAG	0.582000													10	133	---	---	---	---	0	0	0.00010058	0	0
TTC37	9652	broad.mit.edu	37	5	94858951	94858951	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr5:94858951C>A	uc003klb.2	-	18	1982	c.1712G>T	c.(1711-1713)GGA>GTA	p.G571V	TTC37_uc010jbf.1_Missense_Mutation_p.G523V	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	571	TPR 9.						binding			ovary(3)|pancreas(1)	4						ATAGTATAGTCCTCGCCTAAG	0.393000													45	78	---	---	---	---	2.77807e-22	5.35684e-21	0.000125731	1	0
SHROOM1	134549	broad.mit.edu	37	5	132158517	132158517	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr5:132158517G>A	uc003kxx.2	-	10	3335	c.2530C>T	c.(2530-2532)CAG>TAG	p.Q844*	SHROOM1_uc003kxy.1_Nonsense_Mutation_p.Q839*	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	844					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AAGGGCGGCTGAACTGGAGGA	0.622000													15	17	---	---	---	---	0	0	0.000422831	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559327	140559327	+	Missense_Mutation	SNP	C	T	T	rs141057693		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr5:140559327C>T	uc011dai.1	+	1	1898	c.1712C>T	c.(1711-1713)GCG>GTG	p.A571V	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	571	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATGGCTCCGCGCCCTGCACC	0.716000													45	184	---	---	---	---	0	0	0.000147903	0	0
TRIM7	81786	broad.mit.edu	37	5	180622520	180622520	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr5:180622520C>T	uc003mmz.1	-	7	1249	c.1182G>A	c.(1180-1182)TCG>TCA	p.S394S	TRIM7_uc003mmv.1_Silent_p.S212S|TRIM7_uc003mmw.1_Silent_p.S186S|TRIM7_uc003mmx.1_Silent_p.S186S|TRIM7_uc003mmy.1_Silent_p.S186S	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	394	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		GATGCCGGCCCGAGGAGAAGC	0.706000													8	58	---	---	---	---	0	0	0.000157383	0	0
JARID2	3720	broad.mit.edu	37	6	15513524	15513524	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr6:15513524C>T	uc003nbj.2	+	16	3565	c.3321C>T	c.(3319-3321)TCC>TCT	p.S1107S	JARID2_uc011div.1_Silent_p.S935S	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	1107					central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				TCCACTCCTCCGCACGCTATG	0.637000													15	14	---	---	---	---	0	0	0.000308642	0	0
HIST1H1E	3008	broad.mit.edu	37	6	26156708	26156708	+	Silent	SNP	G	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr6:26156708G>C	uc003ngq.2	+	1	150	c.90G>C	c.(88-90)GCG>GCC	p.A30A	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	30					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						CTGCAGGTGCGGCCAAGCGCA	0.642000													47	72	---	---	---	---	0	0	0.000589545	0	0
TMEM195	392636	broad.mit.edu	37	7	15430321	15430321	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr7:15430321T>C	uc003stb.1	-	8	967	c.797A>G	c.(796-798)AAT>AGT	p.N266S		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	266					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						TTCAAATGTATTAATGGGATG	0.289000													56	69	---	---	---	---	0	0	0.000147903	0	0
STEAP2	261729	broad.mit.edu	37	7	89856412	89856412	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr7:89856412G>T	uc003ujz.2	+	3	1013	c.620G>T	c.(619-621)CGA>CTA	p.R207L	STEAP2_uc003ujy.2_Missense_Mutation_p.R249L|STEAP2_uc010len.2_Missense_Mutation_p.R207L|STEAP2_uc003uka.2_Missense_Mutation_p.R207L|STEAP2_uc003ukb.2_Missense_Mutation_p.R207L|STEAP2_uc003ukc.2_Missense_Mutation_p.R207L|STEAP2_uc003ukd.2_Missense_Mutation_p.R207L	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	207					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					TTACCCCTACGACTCTTTACT	0.438000													24	37	---	---	---	---	4.4004e-07	7.80631e-06	0.00047179	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				23	34	---	---	---	---	0	0	0.000229342	0	0
TG	7038	broad.mit.edu	37	8	133880376	133880376	+	Silent	SNP	C	T	T			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr8:133880376C>T	uc003ytw.2	+	2	125	c.84C>T	c.(82-84)GCC>GCT	p.A28A		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	28					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGGTGGATGCCCAGCCCCTTC	0.547000													13	37	---	---	---	---	0	0	0.000151284	0	0
TEK	7010	broad.mit.edu	37	9	27157925	27157925	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr9:27157925G>A	uc003zqi.3	+	2	591	c.149G>A	c.(148-150)CGC>CAC	p.R50H	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Missense_Mutation_p.R50H|TEK_uc011lno.1_Missense_Mutation_p.R50H|TEK_uc011lnp.1_Intron|TEK_uc003zqj.1_Missense_Mutation_p.R27H	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	50	Extracellular (Potential).|Ig-like C2-type 1.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TCTGGGTGGCGCCCCCATGAG	0.502000													50	81	---	---	---	---	0	0	0.000147903	0	0
IL11RA	3590	broad.mit.edu	37	9	34659885	34659885	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr9:34659885A>C	uc003zvi.2	+	9	2296	c.940A>C	c.(940-942)ACT>CCT	p.T314P	IL11RA_uc011loq.1_Missense_Mutation_p.T314P|IL11RA_uc003zvj.2_Missense_Mutation_p.T314P|IL11RA_uc003zvk.2_Missense_Mutation_p.T314P|IL11RA_uc010mke.2_Missense_Mutation_p.T196P|IL11RA_uc003zvl.2_RNA	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	314	Extracellular (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	GGCCTGGGGAACTCCGAGCAC	0.592000													16	29	---	---	---	---	0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	1	1975045	1975046	+	IGR	INS	-	G	G			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr1:1975045_1975046insG								GABRD (12853 upstream) : PRKCZ (6863 downstream)																							ggagcgaccccggccctggtgt	0.238													5	2	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152128205	152128208	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr1:152128205_152128208delTGTC	uc001ezs.1	-	3	1432_1435	c.1367_1370delGACA	c.(1366-1371)AGACAAfs	p.R456fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	456_457	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACTCTGGCCTTGTCTGTCTGTCTG	0.520													11	1497	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	207273399	207273414	+	IGR	DEL	ATGTGTGTGTGTGTGT	-	-	rs57088528		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr1:207273399_207273414delATGTGTGTGTGTGTGT								C4BPB (64 upstream) : C4BPA (4097 downstream)																							ATAATGCACCAtgtgtgtgtgtgtgtgtgtgtgtgt	0.255													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	222641941	222641942	+	IGR	INS	-	C	C			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr1:222641941_222641942insC								DUSP10 (726480 upstream) : HHIPL2 (53660 downstream)																							GTCCCTCAGTGCCTGCGCAAGG	0.545													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	30900648	30900652	+	IGR	DEL	AAAGA	-	-	rs137937328		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr10:30900648_30900652delAAAGA								MAP3K8 (149887 upstream) : LYZL2 (57 downstream)																							agaaagaaagaaagaaaagaaaaga	0.093													5	1	---	---	---	---					
NAALADL1	10004	broad.mit.edu	37	11	64825888	64825888	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr11:64825888delC	uc001ocn.2	-	1	122	c.106delG	c.(106-108)GCCfs	p.A36fs	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	36	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						TCCTGGGGGGCCAGTGAGTTG	0.642													14	47	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	96514998	96514999	+	IGR	INS	-	A	A	rs34470309		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr11:96514998_96514999insA								JRKL (388271 upstream) : None (None downstream)																							GCTTAGTTATTaaaaaaaaaaa	0.366													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	18988562	18988562	+	IGR	DEL	T	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr17:18988562delT								GRAP (38226 upstream) : GRAPL (42220 downstream)																							CTGATGTGTGTTTTTTTTTTT	0.279													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	65042572	65042572	+	IGR	DEL	A	-	-	rs145197761		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr18:65042572delA								CDH19 (771356 upstream) : DSEL (131247 downstream)																							TATTACCAGTAAAAAAAAAAA	0.338													2	4	---	---	---	---					
SIGLEC6	946	broad.mit.edu	37	19	52033047	52033049	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr19:52033047_52033049delCTT	uc002pwy.2	-	5	1103_1105	c.941_943delAAG	c.(940-945)GAAGGA>GGA	p.E314del	SIGLEC6_uc002pwz.2_In_Frame_Del_p.E298del|SIGLEC6_uc002pxa.2_In_Frame_Del_p.E314del|SIGLEC6_uc010ydb.1_In_Frame_Del_p.E251del|SIGLEC6_uc010ydc.1_In_Frame_Del_p.E314del|SIGLEC6_uc010eoz.1_In_Frame_Del_p.E292del|SIGLEC6_uc010epb.1_In_Frame_Del_p.E267del|SIGLEC6_uc010epa.1_In_Frame_Del_p.E303del	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	314	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		GTGAAATCTCCTTCTTCTGCAGA	0.601													32	56	---	---	---	---					
PBRM1	55193	broad.mit.edu	37	3	52713877	52713877	+	5'Flank	DEL	T	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr3:52713877delT	uc003des.2	-						PBRM1_uc003dex.2_5'Flank|PBRM1_uc003deq.2_5'Flank|PBRM1_uc003der.2_5'Flank|PBRM1_uc003det.2_5'Flank|PBRM1_uc003deu.2_5'Flank|PBRM1_uc003dev.2_5'Flank|PBRM1_uc003dew.2_5'Flank|PBRM1_uc010hmk.1_5'Flank|PBRM1_uc003dey.2_Intron|PBRM1_uc003dez.1_5'Flank|PBRM1_uc003dfb.1_5'Flank	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4						chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		TAGCTATAAGTTTTTTTTTTT	0.363			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	57829484	57829485	+	IGR	INS	-	A	A			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr4:57829484_57829485insA								REST (31145 upstream) : C4orf14 (32 downstream)																							ctcagtctcagaaaaaaaaaaa	0.104													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101967963	101967964	+	IGR	INS	-	A	A	rs138796949	by1000genomes	TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr7:101967963_101967964insA								SH2B2 (5786 upstream) : SPDYE6 (18229 downstream)																							TTTTTTCCCTTAAAAAAAAAAG	0.371													9	5	---	---	---	---					
UBXN8	7993	broad.mit.edu	37	8	30601611	30601611	+	5'Flank	DEL	C	-	-	rs3217273		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr8:30601611delC	uc003xii.2	+						UBXN8_uc010lvi.2_5'Flank|UBXN8_uc011lbb.1_5'Flank	NM_005671	NP_005662	O00124	UBXN8_HUMAN	reproduction 8						single fertilization						0						TTGACCCTCTCCCAGCCGGCC	0.587													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90460050	90460051	+	IGR	DEL	GA	-	-			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chr9:90460050_90460051delGA								CTSL3 (58251 upstream) : C9orf79 (37690 downstream)																							tgtgtgtgtgGATATCAGCTTT	0.302													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	52641984	52641984	+	IGR	DEL	A	-	-	rs113470084		TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chrX:52641984delA								XAGE1D (398033 upstream) : SSX8 (10001 downstream)																							GAAAATGCAGAAAAAAAATGG	0.423													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	9368339	9368340	+	IGR	INS	-	TC	TC			TCGA-BJ-A290-01A-11D-A17V-08	TCGA-BJ-A290-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	e9f5e75c-a8b7-4747-912b-1c261d4e3ee0	5ed6f01d-f1a2-403a-88d9-afc258e621aa	g.chrY:9368339_9368340insTC								TSPY1 (20950 upstream) : RBMY3AP (79990 downstream)																							ttgtgtgtgtgtgtgtgtgtat	0.277													4	9	---	---	---	---					
