Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ATP1A1	476	broad.mit.edu	37	1	116932301	116932301	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr1:116932301T>G	uc001ege.2	+	8	1334	c.995T>G	c.(994-996)GTG>GGG	p.V332G	ATP1A1_uc010owv.1_Missense_Mutation_p.V301G|ATP1A1_uc010oww.1_Missense_Mutation_p.V332G|ATP1A1_uc010owx.1_Missense_Mutation_p.V301G	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	332	Helical; (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	GTAGCCAATGTGCCGGAAGGT	0.507000													12	26	---	---	---	---	0	0	0.105934	0	0
LOC284232	284232	broad.mit.edu	37	13	19415650	19415650	+	RNA	SNP	C	A	A			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr13:19415650C>A	uc010tcj.1	-	1		c.30460G>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaacccaaacaaaacaaaaC	0.179000													6	18	---	---	---	---	6.40141e-05	7.85628e-05	0.080935	1	0
KTN1	3895	broad.mit.edu	37	14	56139949	56139949	+	Silent	SNP	A	G	G			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr14:56139949A>G	uc001xcb.2	+	41	4049	c.3747A>G	c.(3745-3747)GTA>GTG	p.V1249V	KTN1_uc001xce.2_Intron|KTN1_uc001xcc.2_Silent_p.V1249V|KTN1_uc001xcd.2_Intron|KTN1_uc010trb.1_Intron|KTN1_uc001xcf.1_Intron|KTN1_uc010aoq.2_Intron|KTN1_uc010trc.1_Intron|KTN1_uc001xcg.2_Intron	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1249	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						CTGAAGCAGTAAGACAGAATG	0.373000			T	RET	papillary thryoid								3	17	---	---	---	---	0	0	0.009096	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40836233	40836233	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr17:40836233C>T	uc002iay.2	+	3	565	c.349C>T	c.(349-351)CGA>TGA	p.R117*	CCR10_uc002iax.3_5'Flank|CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	117	Extracellular (Potential).|F5/8 type C.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		GTTCTACCAGCGAGGGCACAA	0.612000													17	134	---	---	---	---	0	0	0.043863	0	0
PSG1	5669	broad.mit.edu	37	19	43382240	43382240	+	Silent	SNP	G	A	A	rs1058959		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr19:43382240G>A	uc002ovb.2	-	2	393	c.255C>T	c.(253-255)GAC>GAT	p.D85D	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Silent_p.D85D|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Silent_p.D85D|PSG1_uc010eio.1_Silent_p.D85D|PSG1_uc002oux.1_Silent_p.D14D|PSG1_uc002ouy.1_Silent_p.D85D|PSG1_uc002ouz.1_Silent_p.D85D|PSG1_uc002ova.1_Silent_p.D85D|PSG1_uc002ovc.2_Silent_p.D85D|PSG1_uc002ovd.1_Silent_p.D85D	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	85	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TTATTTCACCGTCTACTACAT	0.448000													18	438	---	---	---	---	0	0	0.049695	0	0
DNMT3A	1788	broad.mit.edu	37	2	25470535	25470535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr2:25470535C>T	uc002rgc.2	-	8	1196	c.939G>A	c.(937-939)TGG>TGA	p.W313*	DNMT3A_uc002rgd.2_Nonsense_Mutation_p.W313*|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Nonsense_Mutation_p.W124*	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	313	Interaction with DNMT1 and DNMT3B.|PWWP.				regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGTCATCCACCAAGACACAA	0.637000			Mis|F|N|S		AML								7	68	---	---	---	---	0	0	0.029380	0	0
HADHA	3030	broad.mit.edu	37	2	26457150	26457150	+	Missense_Mutation	SNP	G	T	T	rs75929560		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr2:26457150G>T	uc002rgy.2	-	5	518	c.388C>A	c.(388-390)CTT>ATT	p.L130I	HADHA_uc010yks.1_Missense_Mutation_p.L43I|HADHA_uc010ykt.1_Missense_Mutation_p.L43I	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	130					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	GACTTTTCAAGTTTCTCAACT	0.423000													5	79	---	---	---	---	2.0095e-06	2.58364e-06	0.029380	1	0
C1QL2	165257	broad.mit.edu	37	2	119915192	119915192	+	Silent	SNP	G	A	A			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr2:119915192G>A	uc002tlo.2	-	1	1280	c.654C>T	c.(652-654)AGC>AGT	p.S218S		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	218	C1q.					collagen				pancreas(1)	1						CCGCCCACATGCTGGTGCCGT	0.642000										HNSCC(49;0.14)			10	28	---	---	---	---	0	0	0.069234	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	47	---	---	---	---	0	0	0.115264	0	0
GRXCR1	389207	broad.mit.edu	37	4	42964970	42964970	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr4:42964970T>C	uc003gwt.2	+	2	446	c.446T>C	c.(445-447)GTC>GCC	p.V149A		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	149	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						CTTCGTGTGGTCCGGACAACC	0.388000													4	80	---	---	---	---	0	0	0.009096	0	0
CTNND2	1501	broad.mit.edu	37	5	11098687	11098687	+	Silent	SNP	C	T	T			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr5:11098687C>T	uc003jfa.1	-	15	2782	c.2637G>A	c.(2635-2637)AAG>AAA	p.K879K	CTNND2_uc010itt.2_Silent_p.K788K|CTNND2_uc011cmy.1_Silent_p.K542K|CTNND2_uc011cmz.1_Silent_p.K446K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.K446K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	879					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CTGGCCATACCTTCCAGCTCC	0.463000													4	62	---	---	---	---	0	0	0.009096	0	0
RASGRF2	5924	broad.mit.edu	37	5	80508237	80508237	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr5:80508237G>A	uc003kha.1	+	23	3209	c.3209G>A	c.(3208-3210)CGT>CAT	p.R1070H	RNU5E_uc011cto.1_Intron|RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	1070	Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		GTCAGCTCCCGTGCCAACGCC	0.542000													11	34	---	---	---	---	0	0	0.093190	0	0
TWISTNB	221830	broad.mit.edu	37	7	19738204	19738204	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr7:19738204G>C	uc003sup.1	-	4	773	c.752C>G	c.(751-753)GCA>GGA	p.A251G		NM_001002926	NP_001002926	Q3B726	RPA43_HUMAN	TWIST neighbor	251	Lys-rich.					microtubule cytoskeleton|nucleolus	DNA-directed RNA polymerase activity			ovary(1)	1						AGTGTCATCTGCATCATCTGC	0.433000													10	224	---	---	---	---	0	0	0.069234	0	0
LOC442421	442421	broad.mit.edu	37	9	66499841	66499841	+	Silent	SNP	T	C	C			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr9:66499841T>C	uc004aee.1	+	1	651	c.651T>C	c.(649-651)GCT>GCC	p.A217A	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TGCGGCTGGCTGCCACCGACC	0.587000													4	37	---	---	---	---	0	0	0.119110	0	0
PTCHD1	139411	broad.mit.edu	37	X	23411839	23411839	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chrX:23411839A>T	uc004dal.3	+	3	2212	c.2204A>T	c.(2203-2205)GAG>GTG	p.E735V		NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	735					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						GTGTCCGTGGAGTTTGGAGTG	0.413000													4	78	---	---	---	---	0	0	0.021553	0	0
TAF1	6872	broad.mit.edu	37	X	70612786	70612786	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chrX:70612786G>A	uc004dzu.3	+	20	3041	c.2990G>A	c.(2989-2991)CGC>CAC	p.R997H	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.R1018H|TAF1_uc004dzv.3_Missense_Mutation_p.R171H	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	997					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GACCTTCGTCGCCTTTCCCTG	0.438000													94	158	---	---	---	---	0	0	0.139131	0	0
COL4A6	1288	broad.mit.edu	37	X	107417689	107417689	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chrX:107417689G>C	uc004enw.3	-	31	3225	c.3122C>G	c.(3121-3123)CCA>CGA	p.P1041R	COL4A6_uc004env.3_Missense_Mutation_p.P1040R|COL4A6_uc011msn.1_Missense_Mutation_p.P1040R|COL4A6_uc010npk.2_Missense_Mutation_p.P1040R	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1041	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TGGCATTCCTGGGAAACCTGT	0.542000									Alport_syndrome_with_Diffuse_Leiomyomatosis				11	85	---	---	---	---	0	0	0.119110	0	0
OR8G2	26492	broad.mit.edu	37	11	124095320	124095320	+	5'Flank	DEL	G	-	-	rs17692257		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr11:124095320delG	uc010saf.1	+							NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,							integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		ATAAACCAAAGGTCATCTAAA	0.264													3	3	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586418	+	RNA	DEL	TATA	-	-	rs10549054		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr12:116586415_116586418delTATA	hsa-mir-620|MI0003634	-			c.42_45delTATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatata	0.196													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	18441114	18441116	+	Splice_Site	DEL	CAC	-	-			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr16:18441114_18441116delCAC	uc010bvw.2	-	7	1784	c.1128_splice	c.e7+1	p.V376_splice						SubName: Full=cDNA FLJ59085, highly similar to Polycystin-1;																		CGGCCATACTCACCACTGGGACT	0.709													8	11	---	---	---	---					
HOXB5	3215	broad.mit.edu	37	17	46671172	46671173	+	5'Flank	INS	-	G	G			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr17:46671172_46671173insG	uc002inr.2	-							NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5							nucleus	sequence-specific DNA binding				0						CGGCCAAATATGGGGGGGGGGT	0.470											OREG0024519	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130948327	130948328	+	IGR	INS	-	TT	TT	rs67732420		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr2:130948327_130948328insTT								FAM128B (28 upstream) : TUBA3E (993 downstream)																							ttttttttttgttttttttttt	0.416													5	10	---	---	---	---					
PRSS50	29122	broad.mit.edu	37	3	46759228	46759229	+	In_Frame_Ins	INS	-	AGC	AGC	rs143449678	by1000genomes	TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr3:46759228_46759229insAGC	uc003cqe.1	-	1	145_146	c.86_87insGCT	c.(85-87)CTT>CTGCTT	p.29_29L>LL	PRSS50_uc003cqf.1_Intron	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	29					proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						TCAGCAACAGAAGCAGCAGCAG	0.728													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	155829896	155829897	+	IGR	INS	-	T	T	rs34397558		TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chr3:155829896_155829897insT								GMPS (174378 upstream) : KCNAB1 (8440 downstream)																							AAAATGCTGtgttttttttttt	0.158													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	106595860	106595861	+	IGR	DEL	TC	-	-			TCGA-DJ-A2Q2-01A-11D-A19J-08	TCGA-DJ-A2Q2-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	565e656c-d5e3-4fe4-a10c-2e9ca1e498b5	a78604a5-9aa0-4d49-b007-24c54f34ea21	g.chrX:106595860_106595861delTC								CXorf41 (108388 upstream) : PRPS1 (275793 downstream)																							AATTGTCTGTTCTCCTCCTTTG	0.406													11	71	---	---	---	---					
