Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SCMH1	22955	broad.mit.edu	37	1	41514523	41514523	+	Missense_Mutation	SNP	T	G	G			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:41514523T>G	uc001cgo.2	-	11	1426	c.1115A>C	c.(1114-1116)CAC>CCC	p.H372P	SCMH1_uc010ojr.1_Missense_Mutation_p.H214P|SCMH1_uc001cgp.2_Missense_Mutation_p.H311P|SCMH1_uc001cgr.2_Missense_Mutation_p.H311P|SCMH1_uc001cgs.2_Missense_Mutation_p.H382P|SCMH1_uc001cgt.2_Missense_Mutation_p.H311P|SCMH1_uc001cgq.2_Missense_Mutation_p.H325P|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	372					anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				CTTATCTAAGTGGGGGCCTGT	0.498000													9	102	---	---	---	---	0	0	0.500413	0	0
KIF21B	23046	broad.mit.edu	37	1	200944676	200944676	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:200944676C>G	uc001gvs.1	-	33	4882	c.4565G>C	c.(4564-4566)CGA>CCA	p.R1522P	KIF21B_uc001gvr.1_Missense_Mutation_p.R1509P|KIF21B_uc009wzl.1_Missense_Mutation_p.R1522P|KIF21B_uc010ppn.1_Missense_Mutation_p.R1509P	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1522	WD 5.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCCGTTATCTCGGGAGCCACT	0.597000													7	50	---	---	---	---	0	0	0.557998	0	0
LRDD	55367	broad.mit.edu	37	11	799816	799816	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr11:799816G>A	uc001lro.1	-	15	2615	c.2473C>T	c.(2473-2475)CGG>TGG	p.R825W	SLC25A22_uc009yci.2_5'Flank|SLC25A22_uc001lrj.2_5'Flank|LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.R808W|LRDD_uc001lrl.1_Missense_Mutation_p.R668W|LRDD_uc001lrm.1_Missense_Mutation_p.R512W|LRDD_uc001lrn.1_Missense_Mutation_p.R668W|LRDD_uc001lrp.1_3'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	825	Death.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GAGCCTCACCGGAACTCGTGC	0.687000													2	0	---	---	---	---	0	0	0.115264	0	0
TP53BP1	7158	broad.mit.edu	37	15	43738684	43738684	+	Missense_Mutation	SNP	C	A	A			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr15:43738684C>A	uc001zrs.2	-	14	3074	c.2926G>T	c.(2926-2928)GGG>TGG	p.G976W	TP53BP1_uc010udp.1_Missense_Mutation_p.G976W|TP53BP1_uc001zrq.3_Missense_Mutation_p.G981W|TP53BP1_uc001zrr.3_Missense_Mutation_p.G981W|TP53BP1_uc010udq.1_Missense_Mutation_p.G981W	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	976					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GGGGCAGCCCCAGAATCCCCT	0.473000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					84	87	---	---	---	---	1.02218e-41	1.19255e-41	0.870114	1	0
Unknown	0	broad.mit.edu	37	16	70268080	70268080	+	RNA	SNP	T	C	C	rs149244259	by1000genomes	TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr16:70268080T>C	uc010cfp.1	-	3		c.335A>G								Homo sapiens cDNA, FLJ98908.																		GTCTTACTGTTGGCTAAAAGG	0.373000													2	6	---	---	---	---	0	0	0.115264	0	0
POLR1A	25885	broad.mit.edu	37	2	86297188	86297188	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr2:86297188C>T	uc002sqs.2	-	13	2198	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K		NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	607					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						ACGTAGGCCTCGGCCCGGCCC	0.572000													19	15	---	---	---	---	0	0	0.608945	0	0
HOXD12	3238	broad.mit.edu	37	2	176964720	176964720	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr2:176964720C>T	uc010zev.1	+	1	191	c.191C>T	c.(190-192)GCG>GTG	p.A64V	HOXD12_uc010zew.1_Missense_Mutation_p.A64V	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	64				QPA -> TC (in Ref. 1; AAF79044).		nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		GCGCAGCCTGCGGGCGCCACT	0.751000													2	1	---	---	---	---	0	0	0.115264	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31981850	31981850	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr20:31981850G>A	uc010gek.2	-	4	555	c.431C>T	c.(430-432)ACA>ATA	p.T144I	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.T54I|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.T144I|CDK5RAP1_uc002wza.2_Missense_Mutation_p.T144I|CDK5RAP1_uc010gel.2_Missense_Mutation_p.T53I|CDK5RAP1_uc010gem.2_Missense_Mutation_p.T144I|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.T144I|CDK5RAP1_uc010gen.2_Missense_Mutation_p.T144I	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	144	MTTase N-terminal.|CDK5 activation inhibition.				brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						GATAGAGCATGTGACAAGGAG	0.403000													5	87	---	---	---	---	0	0	0.184627	0	0
Unknown	0	broad.mit.edu	37	22	18846029	18846029	+	RNA	SNP	C	T	T	rs148762447	by1000genomes	TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr22:18846029C>T	uc002zoe.2	+	5		c.2391C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TTGAAGGCTGCCTTCAGTGCC	0.647000													5	52	---	---	---	---	0	0	0.184627	0	0
NEIL3	55247	broad.mit.edu	37	4	178283471	178283471	+	Missense_Mutation	SNP	A	G	G			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr4:178283471A>G	uc003iut.2	+	10	1781	c.1664A>G	c.(1663-1665)AAC>AGC	p.N555S		NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	555					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		CCATTCTGCAACCATGGCAAG	0.388000								BER_DNA_glycosylases					15	73	---	---	---	---	0	0	0.520397	0	0
PADI2	11240	broad.mit.edu	37	1	17411155	17411155	+	Frame_Shift_Del	DEL	G	-	-	rs149752241	by1000genomes	TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:17411155delG	uc001baf.2	-	8	959	c.877delC	c.(877-879)CGGfs	p.R293fs	PADI2_uc010ocm.1_Intron|PADI2_uc001bag.1_Frame_Shift_Del_p.R293fs	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	293					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	GGAGCAATCCGGAATATCACG	0.517													2	4	---	---	---	---					
FAM167B	84734	broad.mit.edu	37	1	32711939	32711940	+	5'Flank	DEL	TC	-	-			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:32711939_32711940delTC	uc001buw.2	+							NM_032648	NP_116037	Q9BTA0	F167B_HUMAN	hypothetical protein LOC84734											ovary(1)	1						ctccctcccttcTCTCTCTCtc	0.030													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	48209043	48209044	+	IGR	INS	-	GGA	GGA	rs143555360	by1000genomes	TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:48209043_48209044insGGA								FOXD2 (302681 upstream) : SKINTL (358343 downstream)																							gtggtggtggtagtggtggtgg	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484665	121484668	+	IGR	DEL	TGTT	-	-	rs71221555		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:121484665_121484668delTGTT								LOC647121 (170979 upstream) : None (None downstream)																							ggaaacactctgtttgtaaagtct	0.000													8	1380	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484805	121484805	+	IGR	DEL	C	-	-	rs1842867		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr1:121484805delC								LOC647121 (171119 upstream) : None (None downstream)																							gttgaacgttcccttagacag	0.000													8	1182	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													7	624	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	76078004	76078005	+	5'Flank	INS	-	T	T			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr15:76078004_76078005insT	uc002bbb.1	-											DQ577530																		TATGCTCTTGGTTTCCCACCTT	0.609													7	24	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	78271437	78271437	+	IGR	DEL	A	-	-	rs66482923		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr15:78271437delA								LOC645752 (52249 upstream) : LOC91450 (14139 downstream)																							TGCGAGCAGGAAGGCCCAGTC	0.642													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr19:27732215_27732216insC								None (None upstream) : LOC148189 (549186 downstream)																							agaaaaggaaatatcttcgtat	0.000													12	1121	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49644698	49644699	+	IGR	INS	-	CGAAA	CGAAA	rs4066504		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr4:49644698_49644699insCGAAA								CWH43 (580605 upstream) : None (None downstream)																							atggaatggaatggaatggaat	0.000													9	73	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	79657118	79657119	+	5'Flank	INS	-	TC	TC	rs139566678	by1000genomes	TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr5:79657118_79657119insTC	uc003kgo.2	-											SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		ctttccttccttctctctcttt	0.000													3	3	---	---	---	---					
HOXA5	3202	broad.mit.edu	37	7	27185066	27185085	+	5'Flank	DEL	GTTTTGTTTTGTTTTGTTTT	-	-	rs70994631		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr7:27185066_27185085delGTTTTGTTTTGTTTTGTTTT	uc003syn.1	-						uc003syp.1_5'Flank	NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5						negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGTGTGTGAGgttttgttttgttttgttttgttttgtttt	0.477													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969348	61969348	+	IGR	DEL	C	-	-	rs28878810		TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr7:61969348delC								None (None upstream) : LOC643955 (782324 downstream)																							ggggtttcttcctttcatgct	0.000													13	1070	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	144493005	144493006	+	IGR	INS	-	TGG	TGG			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chr8:144493005_144493006insTGG								RHPN1 (26616 upstream) : MAFA (18509 downstream)																							ggtgatggtgatggtggtggtg	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	3442803	3442805	+	IGR	DEL	CAT	-	-			TCGA-DO-A1JZ-01A-11D-A13W-08	TCGA-DO-A1JZ-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	7c622602-14bf-4377-bb3d-c6197a55a8cc	6f4ff365-ee63-40d0-8f71-ed062f755d22	g.chrX:3442803_3442805delCAT								MXRA5 (178119 upstream) : PRKX (79608 downstream)																							ccaccaccaccatcaccatcacc	0.000													3	3	---	---	---	---					
