Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SF3A3	10946	broad.mit.edu	37	1	38446348	38446348	+	Silent	SNP	C	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr1:38446348C>T	uc001cci.2	-	8	724	c.600G>A	c.(598-600)GTG>GTA	p.V200V	SF3A3_uc010oik.1_Silent_p.V147V	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	200					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GGAGAGGCTTCACTCTATCTG	0.438000													5	75	---	---	---	---	0	0	1	0	0
OR2T33	391195	broad.mit.edu	37	1	248437065	248437065	+	Missense_Mutation	SNP	G	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr1:248437065G>T	uc010pzi.1	-	1	52	c.52C>A	c.(52-54)CAC>AAC	p.H18N		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GCTCTGGTGTGGTTAAAGAGT	0.448000													14	100	---	---	---	---	2.89027e-11	3.10436e-11	1	1	0
ZP1	22917	broad.mit.edu	37	11	60636685	60636685	+	Silent	SNP	G	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr11:60636685G>A	uc001nqd.2	+	2	284	c.264G>A	c.(262-264)CCG>CCA	p.P88P	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	88	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CCTCCAGGCCGCAGGAGCCTG	0.582000													3	22	---	---	---	---	0	0	1	0	0
ARID2	196528	broad.mit.edu	37	12	46125035	46125035	+	Silent	SNP	A	G	G			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr12:46125035A>G	uc001ros.1	+	3	222	c.222A>G	c.(220-222)GAA>GAG	p.E74E	ARID2_uc001ror.2_Silent_p.E74E	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	74	ARID.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AAATTGTTGAAGAGTTCAACT	0.373000													4	102	---	---	---	---	0	0	1	0	0
LOC374491	374491	broad.mit.edu	37	13	25161397	25161397	+	RNA	SNP	C	G	G	rs3874227	by1000genomes	TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr13:25161397C>G	uc001upm.2	+	8		c.921C>G			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TGAAACATCTCTACAACTGGA	0.343000													3	56	---	---	---	---	0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612000													4	37	---	---	---	---	0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72831869	72831869	+	Missense_Mutation	SNP	T	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr16:72831869T>C	uc002fck.2	-	9	5385	c.4712A>G	c.(4711-4713)CAT>CGT	p.H1571R	ZFHX3_uc002fcl.2_Missense_Mutation_p.H657R	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1571					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTTTAACTTATGCAGGTGGGA	0.463000													48	53	---	---	---	---	0	0	1	0	0
PLCG2	5336	broad.mit.edu	37	16	81944307	81944307	+	Missense_Mutation	SNP	A	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr16:81944307A>C	uc002fgt.2	+	18	2068	c.1916A>C	c.(1915-1917)AAC>ACC	p.N639T	PLCG2_uc010chg.1_Missense_Mutation_p.N639T	NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	639					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						CCCAACCCCAACCCCCACGAG	0.652000													13	80	---	---	---	---	0	0	1	0	0
CDRT15P	94158	broad.mit.edu	37	17	13927814	13927814	+	5'Flank	SNP	A	T	T	rs141406384	by1000genomes	TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr17:13927814A>T	uc002god.1	+							NR_003261				Homo sapiens CMT1A duplicated region transcript 15 pseudogene (CDRT15P), non-coding RNA.												0						TTGGTGGGAGACGCTCAAGAG	0.512000													5	15	---	---	---	---	0	0	1	0	0
UBE2O	63893	broad.mit.edu	37	17	74395058	74395058	+	Missense_Mutation	SNP	A	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr17:74395058A>C	uc002jrm.3	-	10	1708	c.1643T>G	c.(1642-1644)GTG>GGG	p.V548G	UBE2O_uc002jrn.3_Missense_Mutation_p.V548G|UBE2O_uc002jrl.3_Missense_Mutation_p.V151G	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	548							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CGTGGTCACCACCTCCACTGC	0.627000													7	26	---	---	---	---	0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43243760	43243760	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr21:43243760C>T	uc002yzq.1	-	21	2884	c.2773G>A	c.(2773-2775)GGC>AGC	p.G925S	PRDM15_uc002yzo.2_Missense_Mutation_p.G596S|PRDM15_uc002yzp.2_Missense_Mutation_p.G616S|PRDM15_uc002yzr.1_Missense_Mutation_p.G616S	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	925					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCTTGTCGCCGTGGGTGAGC	0.607000													2	0	---	---	---	---	0	0	1	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701304	195701304	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr3:195701304C>T	uc011btq.1	-	8	1189	c.560G>A	c.(559-561)GGC>GAC	p.G187D	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGGGCACATGCCTGACCAGAC	0.572000													3	31	---	---	---	---	0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117683908	117683908	+	Missense_Mutation	SNP	G	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr6:117683908G>T	uc003pxp.1	-	21	3438	c.3239C>A	c.(3238-3240)ACA>AAA	p.T1080K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1080	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TTCAAATTTTGTTAACACCCC	0.343000			T	GOPC|ROS1	glioblastoma|NSCLC								35	70	---	---	---	---	4.62619e-21	5.15998e-21	1	1	0
CTTNBP2	83992	broad.mit.edu	37	7	117424503	117424503	+	Missense_Mutation	SNP	A	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr7:117424503A>C	uc003vjf.2	-	5	2166	c.2074T>G	c.(2074-2076)TCA>GCA	p.S692A		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	692										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AGGGAGGGTGACCAGCCTGTA	0.512000													10	49	---	---	---	---	0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				41	44	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	69634798	69634798	+	RNA	SNP	G	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr9:69634798G>A	uc004afu.3	-	3		c.273C>T								Homo sapiens aquaporin 7 pseudogene 2, mRNA (cDNA clone IMAGE:30406582).																		CCTGGTCCACGATGGCGAAGA	0.597000													6	12	---	---	---	---	0	0	1	0	0
FAM78A	286336	broad.mit.edu	37	9	134136508	134136508	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr9:134136508G>A	uc004cak.2	-	2	893	c.553C>T	c.(553-555)CGG>TGG	p.R185W	FAM78A_uc004caj.2_Missense_Mutation_p.R182W	NM_033387	NP_203745	Q5JUQ0	FA78A_HUMAN	hypothetical protein LOC286336	185										ovary(1)	1	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.15e-05)|Epithelial(140;0.000267)		CTCTGGTCCCGGTAGATATTG	0.572000													39	46	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	3380	3380	+	RNA	SNP	G	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrM:3380G>A	uc004cos.3	+	2		c.1673G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		GCTTACCGAACGAAAAATTCT	0.408000													564	7	---	---	---	---	0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122616871	122616871	+	Silent	SNP	T	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrX:122616871T>C	uc004etq.3	+	16	2954	c.2661T>C	c.(2659-2661)TAT>TAC	p.Y887Y	GRIA3_uc004etr.3_Silent_p.Y887Y|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	887	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	ACAACGTGTATGGAACAGAGA	0.373000													10	120	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	10241	10242	+	5'Flank	INS	-	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr1:10241_10242insA	uc001aaa.3	+						uc010nxq.1_5'Flank|uc010nxr.1_5'Flank					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		cccctaaccctaaccctaaacc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385449	42385474	+	IGR	DEL	GAATGGAATCATCATTGAATGGAATA	-	-	rs78814455		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr10:42385449_42385474delGAATGGAATCATCATTGAATGGAATA								None (None upstream) : LOC441666 (441841 downstream)																							caatgaactcgaatggaatcatcattgaatggaatagaatggaatc	0.000													7	473	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400487	42400487	+	IGR	DEL	C	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr10:42400487delC								None (None upstream) : LOC441666 (426828 downstream)																							gttgaaccttcctttagacag	0.000													8	2031	---	---	---	---					
GBF1	8729	broad.mit.edu	37	10	104125331	104125332	+	Frame_Shift_Ins	INS	-	T	T	rs141624228		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr10:104125331_104125332insT	uc001kux.1	+	18	2521_2522	c.2281_2282insT	c.(2281-2283)ATTfs	p.I761fs	GBF1_uc001kuy.1_Frame_Shift_Ins_p.I761fs|GBF1_uc001kuz.1_Frame_Shift_Ins_p.I762fs	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	761	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCGCAAAAACATTGACCTGTTG	0.376													60	64	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	58060361	58060362	+	IGR	INS	-	T	T	rs34408829		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr11:58060361_58060362insT								OR10W1 (24629 upstream) : OR5B17 (65238 downstream)																							ATTGAGATTCCttttttttttt	0.223													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	112850465	112850466	+	IGR	INS	-	CCTC	CCTC	rs146283556	by1000genomes	TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr13:112850465_112850466insCCTC								SOX1 (124445 upstream) : C13orf28 (180203 downstream)																							cttttttccttcctccctccct	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22482640	22482642	+	IGR	DEL	TGT	-	-	rs140253182		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr15:22482640_22482642delTGT								OR4N3P (68255 upstream) : MIR1268 (30587 downstream)																							ACAGAATAAATGTTGTATGAAAA	0.128													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27733247	27733247	+	IGR	DEL	A	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr19:27733247delA								None (None upstream) : LOC148189 (548155 downstream)																							aactagacagaatcattctca	0.000													9	1225	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27740191	27740191	+	IGR	DEL	C	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr19:27740191delC								None (None upstream) : LOC148189 (541211 downstream)																							aacgggatttcttcatataag	0.000													8	88	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	146656726	146656727	+	IGR	INS	-	T	T			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr2:146656726_146656727insT								None (None upstream) : PABPC1P2 (687898 downstream)																							tttcttttttctttttttttcc	0.149													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	45417700	45417701	+	IGR	INS	-	GT	GT	rs149314137		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr20:45417700_45417701insGT								SLC2A10 (52717 upstream) : EYA2 (105562 downstream)																							tgggtgtgcaggtgtgtttatt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44613423	44613424	+	IGR	DEL	AC	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr21:44613423_44613424delAC								CRYAA (20510 upstream) : SIK1 (220974 downstream)																							acacacccagacacacacacac	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3595778	3595781	+	IGR	DEL	TGTC	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr4:3595778_3595781delTGTC								LRPAP1 (61554 upstream) : ADRA2C (172294 downstream)																							ggtgtgcatgtgtctgtctgtgtg	0.025													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49107447	49107447	+	IGR	DEL	T	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr4:49107447delT								CWH43 (43354 upstream) : None (None downstream)																							ttccattccattccattgcac	0.000													10	140	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49323469	49323470	+	IGR	INS	-	CA	CA	rs79117116		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr4:49323469_49323470insCA								CWH43 (259376 upstream) : None (None downstream)																							acacacacacgcacacacacac	0.243													13	114	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49645179	49645180	+	IGR	INS	-	G	G			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr4:49645179_49645180insG								CWH43 (581086 upstream) : None (None downstream)																							tggaatcatccgagtggaatgg	0.000													8	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49652780	49652781	+	IGR	INS	-	A	A			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr4:49652780_49652781insA								CWH43 (588687 upstream) : None (None downstream)																							gaatggaatggatcaacccgag	0.000													9	20	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	56416572	56416573	+	IGR	DEL	AA	-	-	rs71602978		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr5:56416572_56416573delAA								MIER3 (149071 upstream) : GPBP1 (53202 downstream)																							actctgtctcaaaaaaaaaaaa	0.228													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	177407456	177407457	+	IGR	INS	-	AC	AC			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr5:177407456_177407457insAC								LOC728554 (96189 upstream) : PROP1 (11779 downstream)																							gtgtgtgtgtgacacagagcgc	0.292													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	131275575	131275575	+	IGR	DEL	C	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr7:131275575delC								PODXL (34199 upstream) : PLXNA4 (532517 downstream)																							ttccttccttccttccttcct	0.070													6	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68401825	68401827	+	IGR	DEL	TTG	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chr9:68401825_68401827delTTG								FAM27B (607636 upstream) : MIR1299 (600412 downstream)																							ctggaggccattgttgtaagtga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	16182	16183	+	Splice_Site	INS	-	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrM:16182_16183insC	uc004coz.1	+	1		c.185_splice	c.e1+1							Homo sapiens isolate ON mitochondrial control region, partial sequence.																		ACCCACATCAAACCCCCCCCCC	0.460													21	504	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	16189	16190	+	RNA	INS	-	C	C			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrM:16189_16190insC	uc004coz.1	+	2		c.193_194insC								Homo sapiens isolate ON mitochondrial control region, partial sequence.																		TCAAACCCCCCCCCCCCATGCT	0.455													14	560	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	61717885	61717888	+	IGR	DEL	AGAA	-	-	rs113755600		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrX:61717885_61717888delAGAA								None (None upstream) : SPIN4 (849220 downstream)																							cggatcccacagaaagagtgtttc	0.000													8	589	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	9940775	9940775	+	IGR	DEL	T	-	-	rs111725543		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrY:9940775delT								TTTY22 (289921 upstream) : None (None downstream)																							CTTACACTTATTCAGTATTGT	0.303													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13451341	13451341	+	IGR	DEL	C	-	-			TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrY:13451341delC								None (None upstream) : None (None downstream)																							ccatttctttctttcaacagc	0.010													8	22	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	58977476	58977477	+	IGR	INS	-	CT	CT	rs112503231		TCGA-DO-A1K0-01A-11D-A13W-08	TCGA-DO-A1K0-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	459aa6ca-af9e-4686-951f-36a18e00524a	0c694145-ea2a-4b7c-949b-6aea0149a530	g.chrY:58977476_58977477insCT								None (None upstream) : None (None downstream)																							acaggatctccctctcacacag	0.010													6	2	---	---	---	---					
