Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MORN1	79906	broad.mit.edu	37	1	2268277	2268277	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:2268277G>A	uc001ajb.1	-	11	1070	c.1049C>T	c.(1048-1050)GCG>GTG	p.A350V	MORN1_uc009vld.2_Missense_Mutation_p.A326V	NM_024848	NP_079124	Q5T089	MORN1_HUMAN	MORN repeat containing 1	350										ovary(2)|central_nervous_system(1)	3	all_cancers(77;0.000194)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.3e-15)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;2.21e-37)|OV - Ovarian serous cystadenocarcinoma(86;5.01e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00137)|BRCA - Breast invasive adenocarcinoma(365;0.00488)|STAD - Stomach adenocarcinoma(132;0.00665)|KIRC - Kidney renal clear cell carcinoma(229;0.0203)|Lung(427;0.212)		ACAATGGGGCGCATGTCCCCT	0.657000													3	31	---	---	---	---	0	0	0.009096	0	0
NBPF3	84224	broad.mit.edu	37	1	21807432	21807432	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:21807432A>G	uc001ber.2	+	12	1741	c.1391A>G	c.(1390-1392)AAG>AGG	p.K464R	NBPF3_uc001bes.2_Missense_Mutation_p.K408R|NBPF3_uc009vqb.2_Missense_Mutation_p.K452R|NBPF3_uc010odm.1_Missense_Mutation_p.K394R	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	464	NBPF 4.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGAATGAAAAAGGACCAAGAA	0.468000													3	244	---	---	---	---	0	0	0.009096	0	0
S100A8	6279	broad.mit.edu	37	1	153362715	153362715	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:153362715T>C	uc001fbs.2	-	3	201	c.146A>G	c.(145-147)AAG>AGG	p.K49R		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	49	EF-hand 2.				chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCTGCACCCTTTTTCTGTCA	0.507000													3	178	---	---	---	---	0	0	0.014758	0	0
ADAM15	8751	broad.mit.edu	37	1	155028663	155028663	+	Silent	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:155028663C>T	uc001fgr.1	+	9	953	c.852C>T	c.(850-852)TTC>TTT	p.F284F	ADAM15_uc001fgq.1_5'UTR|ADAM15_uc009wpc.1_RNA|ADAM15_uc010pet.1_Silent_p.F268F|ADAM15_uc010peu.1_Silent_p.F301F|ADAM15_uc001fgt.1_Silent_p.F284F|ADAM15_uc010pev.1_Silent_p.F294F|ADAM15_uc001fgs.1_Silent_p.F284F|ADAM15_uc001fgu.1_Silent_p.F284F|ADAM15_uc001fgw.1_Silent_p.F284F|ADAM15_uc001fgv.1_Silent_p.F284F|ADAM15_uc001fgx.1_Silent_p.F284F|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	284	Peptidase M12B.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			TCGAAAACTTCCTCCACTGGC	0.622000													4	117	---	---	---	---	0	0	0.009096	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75406952	75406952	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr10:75406952A>G	uc001jut.3	-	4	2610	c.2458T>C	c.(2458-2460)TTT>CTT	p.F820L	SYNPO2L_uc001jus.3_Missense_Mutation_p.F596L	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	820	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					TGGGGGAAAAAGGGAGAGAGC	0.577000													4	171	---	---	---	---	0	0	0.009096	0	0
CCDC67	159989	broad.mit.edu	37	11	93103317	93103317	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr11:93103317C>T	uc001pdq.2	+	6	611	c.511C>T	c.(511-513)CAA>TAA	p.Q171*	CCDC67_uc001pdo.1_Nonsense_Mutation_p.Q171*|CCDC67_uc001pdp.2_Nonsense_Mutation_p.Q171*	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	171	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AGATGCTCAACAAAAATTATT	0.308000													8	14	---	---	---	---	0	0	0.004482	0	0
TEX12	56158	broad.mit.edu	37	11	112040055	112040055	+	Splice_Site	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr11:112040055G>A	uc001pnc.2	+	2	195	c.63_splice	c.e2+1	p.E21_splice	TEX12_uc001pnd.2_Splice_Site_p.E21_splice	NM_031275	NP_112565	Q9BXU0	TEX12_HUMAN	testis expressed sequence 12												0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;1.2e-06)|BRCA - Breast invasive adenocarcinoma(274;1.4e-06)|all cancers(92;1.97e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		AGAATTGGAGGTAAGCTGTAT	0.373000													4	147	---	---	---	---	0	0	0.014758	0	0
SCYL2	55681	broad.mit.edu	37	12	100704966	100704966	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr12:100704966C>A	uc001thn.2	+	5	675	c.625C>A	c.(625-627)CAA>AAA	p.Q209K	SCYL2_uc009ztw.1_Missense_Mutation_p.Q36K|SCYL2_uc001thm.1_Missense_Mutation_p.Q209K	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	209	Protein kinase.				endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						TCCTTCTGAACAAGAGGTAAT	0.348000													3	95	---	---	---	---	0.00909568	0.00988661	0.009096	1	0
TPTE2	93492	broad.mit.edu	37	13	20048099	20048099	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr13:20048099C>G	uc001umd.2	-	7	558	c.347G>C	c.(346-348)GGC>GCC	p.G116A	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Intron|TPTE2_uc001ume.2_Missense_Mutation_p.G79A|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	116	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		AAAAAATAAGCCAATAGCTAG	0.333000													3	129	---	---	---	---	0	0	0.004672	0	0
ATP7B	540	broad.mit.edu	37	13	52548923	52548923	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr13:52548923C>A	uc001vfw.2	-	2	590	c.433G>T	c.(433-435)GTC>TTC	p.V145F	ATP7B_uc010adv.2_Missense_Mutation_p.V145F|ATP7B_uc001vfx.2_Missense_Mutation_p.V145F|ATP7B_uc001vfy.2_Missense_Mutation_p.V145F|ATP7B_uc010tgt.1_Missense_Mutation_p.V145F|ATP7B_uc010tgu.1_Missense_Mutation_p.V145F|ATP7B_uc010tgv.1_Missense_Mutation_p.V145F|ATP7B_uc010tgw.1_Missense_Mutation_p.V113F	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	145	HMA 2.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CGGAGCTTGACCACAGCCTCC	0.577000									Wilson_disease				16	56	---	---	---	---	2.94398e-08	3.34543e-08	0.007413	1	0
OR11G2	390439	broad.mit.edu	37	14	20666079	20666079	+	Silent	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr14:20666079G>A	uc010tlb.1	+	1	585	c.585G>A	c.(583-585)TTG>TTA	p.L195L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	195	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCTGGTTCTTGATTCCTATCG	0.453000													6	54	---	---	---	---	0	0	0.001168	0	0
DAAM1	23002	broad.mit.edu	37	14	59791100	59791100	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr14:59791100A>G	uc001xdz.1	+	8	1042	c.917A>G	c.(916-918)TAT>TGT	p.Y306C	DAAM1_uc001xea.1_Missense_Mutation_p.Y306C|DAAM1_uc001xeb.1_Missense_Mutation_p.Y306C	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	306	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CATCTTCGCTATGAATTTCTG	0.289000													43	100	---	---	---	---	0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	15	20170018	20170018	+	IGR	SNP	C	G	G	rs140304162	by1000genomes	TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr15:20170018C>G								None (None upstream) : GOLGA6L6 (567076 downstream)																							GGTGACTCTGCCCTGGAACTT	0.547000													6	264	---	---	---	---	0	0	0.001984	0	0
COG8	84342	broad.mit.edu	37	16	69366649	69366649	+	Missense_Mutation	SNP	A	G	G	rs3027		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr16:69366649A>G	uc002ewy.2	-	4	1621	c.1550T>C	c.(1549-1551)CTT>CCT	p.L517P	PDF_uc002ewx.1_5'Flank|COG8_uc002ewz.3_Missense_Mutation_p.L517P	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	517					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						TGGTGGAAAAAGGACTTGGAG	0.368000													3	155	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	17	21731270	21731270	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr17:21731270T>C	uc002gyy.3	+	2	697	c.572T>C	c.(571-573)ATC>ACC	p.I191T						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		ATCCCCCCGATCAGCAGAGGC	0.547000													3	110	---	---	---	---	0	0	0.009096	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678432	48678432	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr17:48678432G>A	uc002irk.1	+	19	4184	c.3812G>A	c.(3811-3813)CGG>CAG	p.R1271Q	CACNA1G_uc002iri.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irj.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irl.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irm.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irn.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002iro.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irp.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irq.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irr.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irs.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irt.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irv.1_Missense_Mutation_p.R1271Q|CACNA1G_uc002irw.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002iru.1_Missense_Mutation_p.R1248Q|CACNA1G_uc002irx.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002iry.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002irz.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isa.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isb.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isc.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isd.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002ise.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isf.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isg.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002ish.1_Missense_Mutation_p.R1184Q|CACNA1G_uc002isi.1_Missense_Mutation_p.R1161Q|CACNA1G_uc002isj.2_5'UTR	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1271	Cytoplasmic (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CTGTGTCACCGGATCATCACC	0.627000													80	178	---	---	---	---	0	0	0.014410	0	0
ALPK2	115701	broad.mit.edu	37	18	56247518	56247518	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr18:56247518A>G	uc002lhj.3	-	4	704	c.490T>C	c.(490-492)TCC>CCC	p.S164P		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	164							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TTGGAGGGGGAGGAGTCAGCT	0.468000													4	355	---	---	---	---	0	0	0.001168	0	0
C3	718	broad.mit.edu	37	19	6702224	6702224	+	Splice_Site	SNP	C	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr19:6702224C>A	uc002mfm.2	-	19	2417	c.2355_splice	c.e19-1	p.G785_splice		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor						complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CGTAGAGATTCTGGATGGAGA	0.507000													28	44	---	---	---	---	9.65021e-13	1.12212e-12	0.010818	1	0
ZNF681	148213	broad.mit.edu	37	19	23927372	23927372	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr19:23927372C>G	uc002nrk.3	-	4	1122	c.980G>C	c.(979-981)AGA>ACA	p.R327T	ZNF681_uc002nrl.3_Missense_Mutation_p.R258T|ZNF681_uc002nrj.3_Missense_Mutation_p.R258T	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	327	C2H2-type 6; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TATCTTATGTCTGGTAAGGTG	0.378000													3	139	---	---	---	---	0	0	0.004672	0	0
RYR1	6261	broad.mit.edu	37	19	38959719	38959719	+	Silent	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr19:38959719C>T	uc002oit.2	+	26	3625	c.3495C>T	c.(3493-3495)GGC>GGT	p.G1165G	RYR1_uc002oiu.2_Silent_p.G1165G	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1165	6 X approximate repeats.|Cytoplasmic.|B30.2/SPRY 2.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCCTCAATGGCGAGGTCCTCA	0.502000													12	119	---	---	---	---	0	0	0.020292	0	0
SPAST	6683	broad.mit.edu	37	2	32312619	32312619	+	Silent	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr2:32312619A>G	uc002roc.2	+	2	695	c.474A>G	c.(472-474)AAA>AAG	p.K158K	SPAST_uc002rod.2_Silent_p.K158K	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	158	Required for interaction with RTN1.|MIT.|Required for interaction with microtubules.|Required for midbody localization.|Sufficient for interaction with CHMP1B.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					AACTGGAAAAAGGAATAGCTG	0.313000													3	166	---	---	---	---	0	0	0.004672	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													7	306	---	---	---	---	0	0	0.010729	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													7	304	---	---	---	---	0	0	0.010729	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													7	61	---	---	---	---	0	0	0.004482	0	0
NF2	4771	broad.mit.edu	37	22	30038263	30038263	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr22:30038263G>A	uc003age.3	+	4	879	c.436G>A	c.(436-438)GTC>ATC	p.V146I	NF2_uc003afy.3_Missense_Mutation_p.V146I|NF2_uc003afz.3_Missense_Mutation_p.V63I|NF2_uc003agf.3_Missense_Mutation_p.V146I|NF2_uc003agb.3_Missense_Mutation_p.V69I|NF2_uc003agc.3_Missense_Mutation_p.V108I|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Missense_Mutation_p.V146I|NF2_uc003aga.3_Missense_Mutation_p.V104I|NF2_uc003agh.3_Missense_Mutation_p.V105I|NF2_uc003agi.3_Missense_Mutation_p.V63I|NF2_uc003agj.3_Missense_Mutation_p.V146I|NF2_uc003agk.3_Missense_Mutation_p.V108I	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	146	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.V122_K149del(5)|p.Y144fs*5(1)|p.V146I(1)|p.K123fs*2(1)|p.L127_D382del(1)|p.A145_L163del(1)|p.L140_P252del(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						TTCTTACGCCGTCCAGGCCAA	0.448000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				3	59	---	---	---	---	0	0	0.004672	0	0
ALG12	79087	broad.mit.edu	37	22	50302984	50302984	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr22:50302984C>A	uc003biy.2	-	6	950	c.676G>T	c.(676-678)GCT>TCT	p.A226S		NM_024105	NP_077010	Q9BV10	ALG12_HUMAN	alpha-1,6-mannosyltransferase ALG12	226	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane					0		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		BRCA - Breast invasive adenocarcinoma(115;0.199)|LUAD - Lung adenocarcinoma(64;0.247)		GAGTCCACAGCAACCGTCAGT	0.478000													3	74	---	---	---	---	0.004672	0.00519111	0.004672	1	0
ACY1	95	broad.mit.edu	37	3	52019429	52019429	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr3:52019429C>T	uc003dcp.2	+	4	273	c.212C>T	c.(211-213)ACA>ATA	p.T71I	ABHD14B_uc003dcn.2_5'Flank|ACY1_uc011bea.1_Missense_Mutation_p.T161I|ACY1_uc011beb.1_Missense_Mutation_p.T71I|ACY1_uc003dcq.2_Missense_Mutation_p.T71I	NM_000666	NP_000657	Q03154	ACY1_HUMAN	aminoacylase 1	71					cellular amino acid metabolic process|proteolysis	cytosol	aminoacylase activity|metal ion binding|metallopeptidase activity			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	L-Aspartic Acid(DB00128)	ACCAACCCTACACTCTCCTCC	0.607000													47	102	---	---	---	---	0	0	0.014410	0	0
MYLK	4638	broad.mit.edu	37	3	123383036	123383036	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr3:123383036G>A	uc003ego.2	-	23	4183	c.3901C>T	c.(3901-3903)CGC>TGC	p.R1301C	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Missense_Mutation_p.R101C|MYLK_uc011bjw.1_Missense_Mutation_p.R1301C|MYLK_uc003egp.2_Missense_Mutation_p.R1232C|MYLK_uc003egq.2_Missense_Mutation_p.R1301C|MYLK_uc003egr.2_Missense_Mutation_p.R1232C|MYLK_uc003egs.2_Missense_Mutation_p.R1125C	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1301	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TGCTCCTGGCGCGCGGCCAGG	0.627000													41	293	---	---	---	---	0	0	0.010771	0	0
MUC7	4589	broad.mit.edu	37	4	71347033	71347033	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr4:71347033C>T	uc011cat.1	+	4	860	c.572C>T	c.(571-573)GCC>GTC	p.A191V	MUC7_uc011cau.1_Missense_Mutation_p.A191V|MUC7_uc003hfj.2_Missense_Mutation_p.A191V|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	191	2.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCACAGCTGCCCCACCCACA	0.587000													5	306	---	---	---	---	0	0	0.014758	0	0
PKHD1	5314	broad.mit.edu	37	6	51619708	51619708	+	Missense_Mutation	SNP	G	A	A	rs148990124		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr6:51619708G>A	uc003pah.1	-	56	8947	c.8671C>T	c.(8671-8673)CGC>TGC	p.R2891C	PKHD1_uc010jzn.1_Missense_Mutation_p.R874C|PKHD1_uc003pai.2_Missense_Mutation_p.R2891C	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2891	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCATGGGGGCGCCAATCCACT	0.438000													26	197	---	---	---	---	0	0	0.015359	0	0
DLL1	28514	broad.mit.edu	37	6	170594187	170594187	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr6:170594187C>T	uc003qxm.2	-	8	1539	c.1069G>A	c.(1069-1071)GGC>AGC	p.G357S		NM_005618	NP_005609	O00548	DLL1_HUMAN	delta-like 1 precursor	357	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell communication|cell fate determination|hemopoiesis|Notch receptor processing|Notch signaling pathway|regulation of cell adhesion	extracellular region|integral to plasma membrane	calcium ion binding|Notch binding			lung(4)|ovary(1)	5		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.71e-23)|BRCA - Breast invasive adenocarcinoma(81;4.81e-06)|GBM - Glioblastoma multiforme(31;0.0584)		CCGTAGAAGCCGGGTGGGCAG	0.557000													4	99	---	---	---	---	0	0	0.014758	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				40	80	---	---	---	---	0	0	0.014410	0	0
SH3GLB2	56904	broad.mit.edu	37	9	131777178	131777178	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr9:131777178T>C	uc004bwv.2	-	4	486	c.340A>G	c.(340-342)ACA>GCA	p.T114A	SH3GLB2_uc004bww.2_Missense_Mutation_p.T114A|SH3GLB2_uc004bwx.1_Missense_Mutation_p.T114A|SH3GLB2_uc011mbm.1_Missense_Mutation_p.T114A	NM_020145	NP_064530	Q9NR46	SHLB2_HUMAN	SH3-domain GRB2-like endophilin B2	114	BAR.				filopodium assembly|signal transduction	cytoplasm|nucleus	cytoskeletal adaptor activity|SH3 domain binding				0						TTGATCAGTGTCTTCCCTGAG	0.532000													62	149	---	---	---	---	0	0	0.014410	0	0
CENPI	2491	broad.mit.edu	37	X	100382562	100382562	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrX:100382562A>T	uc004egx.2	+	10	1252	c.982A>T	c.(982-984)AGT>TGT	p.S328C	CENPI_uc011mrg.1_Missense_Mutation_p.S328C|CENPI_uc004egy.2_Missense_Mutation_p.S328C	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	328					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						AAAAGAGATGAGTCTTTCTGA	0.358000													63	126	---	---	---	---	0	0	0.014410	0	0
F8	2157	broad.mit.edu	37	X	154157202	154157202	+	Silent	SNP	G	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrX:154157202G>A	uc004fmt.2	-	14	5034	c.4863C>T	c.(4861-4863)AAC>AAT	p.N1621N		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1621	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTTCACAAGCGTTCAGGGACA	0.413000													5	286	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	4707312	4707314	+	IGR	DEL	TGA	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:4707312_4707314delTGA								LOC284661 (222568 upstream) : AJAP1 (7791 downstream)																							gcggtggtggtgatgatgatggt	0.000													6	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	30180213	30180217	+	IGR	DEL	AGGAG	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:30180213_30180217delAGGAG								PTPRU (526898 upstream) : None (None downstream)																							gtataagggaaggagaggagaggag	0.137													2	4	---	---	---	---					
PVRL4	81607	broad.mit.edu	37	1	161059028	161059030	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr1:161059028_161059030delAGC	uc001fxo.2	-	1	356_358	c.57_59delGCT	c.(55-60)CTGCTA>CTA	p.19_20LL>L		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	19_20					adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGCCAGCAGTAGCAGCAGCAGCA	0.512													8	280	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	38931303	38931304	+	IGR	INS	-	T	T	rs142011881		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr10:38931303_38931304insT								LOC399744 (190223 upstream) : None (None downstream)																							ATGGAAAAAAATTGTAAAGTAT	0.272													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	59147040	59147041	+	IGR	INS	-	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr10:59147040_59147041insC								None (None upstream) : IPMK (808577 downstream)																							ccccacccccacccccccacag	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	50189122	50189123	+	IGR	INS	-	TC	TC			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr11:50189122_50189123insTC								OR4C12 (185085 upstream) : LOC441601 (49877 downstream)																							CCttcttcctttctctctctct	0.243													3	6	---	---	---	---					
FTH1	2495	broad.mit.edu	37	11	61732517	61732517	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr11:61732517delT	uc001nsu.2	-	3	564	c.329delA	c.(328-330)AATfs	p.N110fs		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	110	Ferritin-like diiron.				cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	CTGATTCACATTTTTTTCCAA	0.423													7	498	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80663839	80663839	+	IGR	DEL	C	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr12:80663839delC								PPP1R12A (334604 upstream) : PTPRQ (174287 downstream)																							AAAAAAAAAACAACAGATTTG	0.328													4	7	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586416	+	RNA	DEL	TA	-	-	rs10549054		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr12:116586415_116586416delTA	hsa-mir-620|MI0003634	-			c.44_45delTA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatata	0.188													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	113548570	113548570	+	IGR	DEL	C	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr13:113548570delC								ATP11A (7090 upstream) : MCF2L (74187 downstream)																							ccccgccccgcccccgccccc	0.333													4	3	---	---	---	---					
TNFAIP2	7127	broad.mit.edu	37	14	103599784	103599786	+	In_Frame_Del	DEL	AGC	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr14:103599784_103599786delAGC	uc001ymm.1	+	9	1762_1764	c.1631_1633delAGC	c.(1630-1635)GAGCAG>GAG	p.Q548del	TNFAIP2_uc010awo.1_Intron|TNFAIP2_uc010txz.1_In_Frame_Del_p.Q217del|TNFAIP2_uc010tya.1_In_Frame_Del_p.Q31del	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	548					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			AAGACGGCCGAGCAGCAGCAGCA	0.626													7	184	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	26299642	26299643	+	IGR	DEL	AG	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr15:26299642_26299643delAG								ATP10A (189325 upstream) : GABRB3 (489052 downstream)																							AACATTGGGCagagagagagag	0.342													3	6	---	---	---	---					
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	-	-	rs140689079		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr18:51795958_51795960delCGA	uc002lfj.3	+	1	110_112	c.42_44delCGA	c.(40-45)GGCGAC>GGC	p.D17del	POLI_uc010xds.1_In_Frame_Del_p.D17del|POLI_uc002lfk.3_5'UTR|POLI_uc002lfl.1_5'Flank	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	17					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAGGCGGCGGCGACGACGACGAG	0.729								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					5	4	---	---	---	---					
GADD45GIP1	90480	broad.mit.edu	37	19	13065273	13065275	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr19:13065273_13065275delGCT	uc002mwb.2	-	2	440_442	c.416_418delAGC	c.(415-420)CAGCGG>CGG	p.Q139del		NM_052850	NP_443082	Q8TAE8	G45IP_HUMAN	growth arrest and DNA-damage-inducible, gamma	139	Poly-Gln.|Potential.				cell cycle|interspecies interaction between organisms	nucleus	protein binding			ovary(1)|skin(1)	2						CAGTTCTCCCGCTGCTGCTGCTG	0.635													7	175	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	41859346	41859347	+	IGR	INS	-	A	A			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr20:41859346_41859347insA								PTPRT (40789 upstream) : SFRS6 (227157 downstream)																							ataaaaataataaaaaaaaaGC	0.238													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	46824300	46824302	+	IGR	DEL	CCT	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr20:46824300_46824302delCCT								SULF2 (408940 upstream) : LOC284749 (164352 downstream)																							ATGCAATTCCcctcctcctcctc	0.502													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	33265262	33265263	+	IGR	INS	-	AC	AC	rs11328413		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr3:33265262_33265263insAC								SUSD5 (4555 upstream) : FBXL2 (53671 downstream)																							tctctctctctacacacacaca	0.030													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	20900659	20900659	+	IGR	DEL	C	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr8:20900659delC								LZTS1 (787856 upstream) : GFRA2 (648871 downstream)																							ccttccaccaccccacctccc	0.189													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	20900764	20900765	+	IGR	INS	-	T	T			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr8:20900764_20900765insT								LZTS1 (787961 upstream) : GFRA2 (648765 downstream)																							cccacctccccccaccttccac	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	21897302	21897303	+	IGR	INS	-	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr8:21897302_21897303insC								NPM2 (2895 upstream) : FGF17 (3125 downstream)																							TTTGCCCTCTGCCCTTTGCCCT	0.446													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	124682446	124682446	+	IGR	DEL	C	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr8:124682446delC								KLHL38 (17256 upstream) : ANXA13 (10589 downstream)																							tcctcctcctcctccccacct	0.154													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68427939	68427940	+	IGR	DEL	AT	-	-	rs113084687		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr9:68427939_68427940delAT								FAM27B (633750 upstream) : MIR1299 (574299 downstream)																							TATGTAAAACATGTCATATATA	0.262													7	42	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90549023	90549024	+	IGR	INS	-	TAAG	TAAG			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr9:90549023_90549024insTAAG								FAM75C1 (10452 upstream) : CDK20 (32337 downstream)																							TTTCAGTTAACTGTGAGTTTAA	0.312													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	131208284	131208285	+	IGR	DEL	AA	-	-	rs143368600		TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chr9:131208284_131208285delAA								CERCAM (8657 upstream) : ODF2 (9181 downstream)																							AGTTTGAGACAAGAGGAGAAAA	0.223													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	10946	10947	+	RNA	INS	-	C	C			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrM:10946_10947insC	uc004cov.3	+	1		c.369_370insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ACCCCCTAACAACCCCCCTCCT	0.455													9	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	52613556	52613557	+	IGR	DEL	AC	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrX:52613556_52613557delAC								XAGE1D (369605 upstream) : SSX8 (38428 downstream)																							acacacacagacacacacacac	0.361													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	65220065	65220067	+	IGR	DEL	TGC	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrX:65220065_65220067delTGC								MSN (258273 upstream) : MIR223 (18645 downstream)																							AGCCCTTTTTtgctgctgctgct	0.192													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13478402	13478402	+	IGR	DEL	A	-	-			TCGA-EL-A3CN-01A-12D-A20C-08	TCGA-EL-A3CN-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f744e4d-4489-4ab6-a400-e0b4bbc33fe5	bfc6c227-a06d-4994-b66d-69381d60e746	g.chrY:13478402delA								None (None upstream) : None (None downstream)																							CCTTTCCTAGAAACGGAGGCC	0.647													13	244	---	---	---	---					
