Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			80	85	---	---	---	---	0	0	0.139131	0	0
MED6	10001	broad.mit.edu	37	14	71051560	71051560	+	Silent	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr14:71051560G>A	uc001xmf.2	-	8	741	c.711C>T	c.(709-711)GGC>GGT	p.G237G	MED6_uc010tth.1_Silent_p.G244G|MED6_uc010tti.1_3'UTR	NM_005466	NP_005457	O75586	MED6_HUMAN	mediator of RNA polymerase II transcription,	237					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex	transcription coactivator activity				0				all cancers(60;0.00315)|BRCA - Breast invasive adenocarcinoma(234;0.00685)|OV - Ovarian serous cystadenocarcinoma(108;0.0352)		TTTCAGGGGGGCCTTTAGCAC	0.448000													12	129	---	---	---	---	0	0	0.080935	0	0
CHD9	80205	broad.mit.edu	37	16	53340255	53340255	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr16:53340255G>T	uc002ehb.2	+	31	6890	c.6726G>T	c.(6724-6726)GAG>GAT	p.E2242D	CHD9_uc002egy.2_Missense_Mutation_p.E2242D|CHD9_uc002ehc.2_Missense_Mutation_p.E2243D|CHD9_uc002ehf.2_Missense_Mutation_p.E1356D|CHD9_uc010cbw.2_Missense_Mutation_p.E308D|CHD9_uc002ehg.1_Missense_Mutation_p.E249D	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2242					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GGACACCAGAGTCTGCTTATA	0.408000													8	31	---	---	---	---	0.00448238	0.00649172	0.047766	1	0
MED31	51003	broad.mit.edu	37	17	6553725	6553725	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr17:6553725C>A	uc002gdg.3	-	2	163	c.57G>T	c.(55-57)CAG>CAT	p.Q19H	MED31_uc002gdh.3_RNA|C17orf100_uc010clp.1_5'Flank	NM_016060	NP_057144	Q9Y3C7	MED31_HUMAN	mediator of RNA polymerase II transcription,	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	protein binding				0						CCAACTCCAACTGAAACCGAA	0.348000													10	108	---	---	---	---	7.48243e-07	1.16393e-06	0.058154	1	0
ARL17A	51326	broad.mit.edu	37	17	44594556	44594556	+	Silent	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr17:44594556G>A	uc002iko.3	-	4	442	c.303C>T	c.(301-303)TGC>TGT	p.C101C	LRRC37A2_uc002ikn.1_Intron	NM_016632	NP_057716	Q8IVW1	ARL17_HUMAN	hypothetical protein LOC51326 isoform b	Error:Variant_position_missing_in_Q8IVW1_after_alignment					protein transport|vesicle-mediated transport	Golgi apparatus	GTP binding				0						CGGTGACCCCGCATAATTTCT	0.413000													5	153	---	---	---	---	0	0	0.014758	0	0
KIAA0892	23383	broad.mit.edu	37	19	19460201	19460201	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr19:19460201C>T	uc002nmk.3	+	16	1543	c.1504C>T	c.(1504-1506)CTC>TTC	p.L502F	KIAA0892_uc002nml.3_Missense_Mutation_p.L107F|KIAA0892_uc010ecd.2_Missense_Mutation_p.L107F|KIAA0892_uc010ece.2_Missense_Mutation_p.L78F	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	502	TPR 4.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						AGCCTGCTCCCTCGTGCTTCT	0.592000													6	173	---	---	---	---	0	0	0.021553	0	0
NPHS1	4868	broad.mit.edu	37	19	36333350	36333350	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr19:36333350C>T	uc002oby.2	-	18	2437	c.2437G>A	c.(2437-2439)GCT>ACT	p.A813T		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	813	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CACTGGTAAGCGCCAGCCTGG	0.572000													52	70	---	---	---	---	0	0	0.139131	0	0
Unknown	0	broad.mit.edu	37	2	96593016	96593016	+	RNA	SNP	C	A	A	rs79307257	by1000genomes	TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr2:96593016C>A	uc002sva.1	-	9		c.389G>T			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		GAAACAGAATCTTTCTCATCA	0.318000													5	50	---	---	---	---	0.000602214	0.000903322	0.014758	1	0
Unknown	0	broad.mit.edu	37	2	96593025	96593025	+	RNA	SNP	C	T	T	rs75189823	by1000genomes	TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr2:96593025C>T	uc002sva.1	-	9		c.380G>A			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TCTTTCTCATCACTTGTAGCC	0.318000													5	45	---	---	---	---	0	0	0.014758	0	0
SCN2A	6326	broad.mit.edu	37	2	166231282	166231282	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr2:166231282A>G	uc002udc.2	+	22	4350	c.4060A>G	c.(4060-4062)ATG>GTG	p.M1354V	SCN2A_uc002udd.2_Missense_Mutation_p.M1354V|SCN2A_uc002ude.2_Missense_Mutation_p.M1354V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1354	III.|Helical; Name=S5 of repeat III; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTCAGTATCATGGGAGTGAA	0.398000													3	84	---	---	---	---	0	0	0.115264	0	0
PCNT	5116	broad.mit.edu	37	21	47783688	47783688	+	Silent	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr21:47783688G>A	uc002zji.3	+	14	2555	c.2448G>A	c.(2446-2448)GAG>GAA	p.E816E	PCNT_uc002zjj.2_Silent_p.E698E	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	816	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CCTTGACGGAGCAGCAGGGCC	0.607000													3	105	---	---	---	---	0	0	0.115264	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50679702	50679702	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr3:50679702G>A	uc003day.1	+	7	1039	c.443G>A	c.(442-444)CGG>CAG	p.R148Q	MAPKAPK3_uc003daz.1_Missense_Mutation_p.R148Q|MAPKAPK3_uc003dba.1_Missense_Mutation_p.R148Q|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.R148Q	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	148	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		GAGATAATGCGGGATATTGGC	0.562000													8	60	---	---	---	---	0	0	0.047766	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563836	140563836	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr5:140563836G>A	uc003liv.2	+	1	2857	c.1702G>A	c.(1702-1704)GGC>AGC	p.G568S		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	568	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGCAGAACGGCTCCGCGCC	0.711000													4	79	---	---	---	---	0	0	0.009096	0	0
DBNL	28988	broad.mit.edu	37	7	44089851	44089851	+	Silent	SNP	C	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr7:44089851C>T	uc003tjp.3	+	2	209	c.111C>T	c.(109-111)AGC>AGT	p.S37S	DBNL_uc003tjn.2_5'UTR|DBNL_uc003tjo.3_Silent_p.S37S|DBNL_uc003tjr.3_5'UTR|DBNL_uc003tjq.3_Silent_p.S37S|DBNL_uc011kbm.1_Silent_p.S37S|DBNL_uc011kbn.1_Intron|DBNL_uc011kbo.1_5'UTR|DBNL_uc011kbp.1_Silent_p.S37S|DBNL_uc011kbq.1_5'UTR|DBNL_uc011kbr.1_5'UTR|DBNL_uc011kbs.1_5'Flank	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	37	ADF-H.				activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						AAGGCAACAGCAATGACATCC	0.557000													7	106	---	---	---	---	0	0	0.038147	0	0
TNPO3	23534	broad.mit.edu	37	7	128641196	128641196	+	Silent	SNP	C	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr7:128641196C>T	uc003vol.1	-	6	1163	c.789G>A	c.(787-789)TTG>TTA	p.L263L	TNPO3_uc003vom.1_Silent_p.L197L|TNPO3_uc010lly.1_Silent_p.L263L|TNPO3_uc010llz.1_Silent_p.L263L	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	263					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						TGGCTAATGGCAAGTTAGTCT	0.463000													61	107	---	---	---	---	0	0	0.139131	0	0
FASTK	10922	broad.mit.edu	37	7	150774839	150774839	+	Silent	SNP	G	C	C			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr7:150774839G>C	uc003wix.1	-	6	1166	c.1068C>G	c.(1066-1068)CGC>CGG	p.R356R	uc011kvf.1_5'Flank|FASTK_uc003wiw.1_Silent_p.R117R|FASTK_uc003wiy.1_Silent_p.R215R|FASTK_uc003wiz.1_Silent_p.R329R|FASTK_uc003wja.1_3'UTR	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	356					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		GGGAGAGGTAGCGACGCACAA	0.692000													3	51	---	---	---	---	0	0	0.115264	0	0
FLJ10661	286042	broad.mit.edu	37	8	8088411	8088411	+	RNA	SNP	A	G	G			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr8:8088411A>G	uc011kwt.1	+	2		c.275A>G			FLJ10661_uc010lrq.2_RNA|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						GAGCTGCTGCAGGATATTTTG	0.488000													3	37	---	---	---	---	0	0	0.009096	0	0
FANCG	2189	broad.mit.edu	37	9	35079474	35079474	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr9:35079474C>T	uc003zwb.1	-	1	540	c.48G>A	c.(46-48)TGG>TGA	p.W16*	FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Nonsense_Mutation_p.W16*	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	16					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TCTTTTCCCTCCACAGGTCCA	0.617000			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				31	61	---	---	---	---	0	0	0.086207	0	0
TAB3	257397	broad.mit.edu	37	X	30873051	30873051	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chrX:30873051G>A	uc004dcj.2	-	6	1394	c.731C>T	c.(730-732)ACT>ATT	p.T244I	TAB3_uc004dck.2_Missense_Mutation_p.T244I|TAB3_uc010ngl.2_Missense_Mutation_p.T244I	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	244	Pro-rich.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						ACTCTGAGGAGTTTGTCTTCC	0.463000													8	9	---	---	---	---	0	0	0.038147	0	0
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs66529359		TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr12:53069236_53069256delTAGCTGCTACCTCCGGAGCCA	uc001sau.1	-	9	1715_1735	c.1656_1676delTGGCTCCGGAGGTAGCAGCTA	c.(1654-1677)TATGGCTCCGGAGGTAGCAGCTAC>TAC	p.552_559YGSGGSSY>Y	KRT1_uc001sav.1_Splice_Site_p.G556_splice	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	552_559	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						tccggagccgtagctgctacctccggagccatagctgccac	0.000													3	5	---	---	---	---					
GOLGA6B	55889	broad.mit.edu	37	15	72957311	72957313	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr15:72957311_72957313delGAG	uc010uks.1	+	14	1569_1571	c.1528_1530delGAG	c.(1528-1530)GAGdel	p.E513del	uc002aux.1_5'Flank|uc002auy.1_5'Flank	NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	513	Potential.										0						TCTGGACAGTGAGGAGGAGGAGG	0.635													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	29103592	29103592	+	IGR	DEL	T	-	-			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr17:29103592delT								SUZ12P (6525 upstream) : CRLF3 (6111 downstream)																							GTATCATTCCttttttttttt	0.159													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16914284	16914284	+	IGR	DEL	C	-	-			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr22:16914284delC								OR11H1 (464480 upstream) : CCT8L2 (157364 downstream)																							TTTTCTAAAACTTTTGAAAGC	0.279													4	7	---	---	---	---					
SIGMAR1	10280	broad.mit.edu	37	9	34637622	34637622	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr9:34637622delC	uc003zvb.2	-	1	147	c.73delG	c.(73-75)GTCfs	p.V25fs	SIGMAR1_uc003zva.3_Frame_Shift_Del_p.V25fs|SIGMAR1_uc003zuz.2_5'UTR|SIGMAR1_uc003zvc.2_Frame_Shift_Del_p.V25fs|SIGMAR1_uc003zvd.2_RNA|SIGMAR1_uc011loo.1_Frame_Shift_Del_p.V25fs	NM_005866	NP_005857	Q99720	SGMR1_HUMAN	sigma non-opioid intracellular receptor 1	25	Helical; (Potential).				ergosterol biosynthetic process|lipid transport	cell junction|endoplasmic reticulum membrane|growth cone|integral to plasma membrane|lipid particle|nuclear inner membrane|nuclear outer membrane	C-8 sterol isomerase activity|drug binding				0					Dextromethorphan(DB00514)	AGCCAGACGACCTGGGTCAGC	0.726													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68433752	68433752	+	IGR	DEL	A	-	-	rs71266713		TCGA-EL-A3GW-01A-11D-A202-08	TCGA-EL-A3GW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	6f3f423d-d21f-4330-9986-26097a9378e7	cd043df0-4d9a-45c5-8a09-4da1761f4f78	g.chr9:68433752delA								FAM27B (639563 upstream) : MIR1299 (568487 downstream)																							TCATTTTGCTATTCAAAGATT	0.294													4	3	---	---	---	---					
