Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LAMC1	3915	broad.mit.edu	37	1	183087214	183087214	+	Silent	SNP	T	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr1:183087214T>C	uc001gpy.3	+	11	2180	c.1923T>C	c.(1921-1923)CCT>CCC	p.P641P		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	641	Laminin IV type A.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTTACCCCTTTTGAATTTC	0.418000													3	101	---	---	---	---	0	0	0.004672	0	0
PRB2	653247	broad.mit.edu	37	12	11546180	11546180	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr12:11546180G>C	uc010shk.1	-	3	867	c.832C>G	c.(832-834)CCA>GCA	p.P278A		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTGGAGGTGGGGGACCTTGA	0.617000													84	201	---	---	---	---	0	0	0.003610	0	0
METT11D1	64745	broad.mit.edu	37	14	21465001	21465001	+	Silent	SNP	T	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr14:21465001T>C	uc001vyn.2	+	14	1520	c.1323T>C	c.(1321-1323)ACT>ACC	p.T441T	METT11D1_uc001vym.2_Silent_p.T432T|METT11D1_uc001vyo.2_Missense_Mutation_p.S466P|METT11D1_uc001vyp.2_Silent_p.T283T|METT11D1_uc001vyq.2_Missense_Mutation_p.S308P|SLC39A2_uc001vyr.2_5'Flank|SLC39A2_uc001vys.2_5'Flank	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	441					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CTGTGCTTACTCCGTCTGCGT	0.527000													3	110	---	---	---	---	0	0	0.000602	0	0
C19orf2	8725	broad.mit.edu	37	19	30477203	30477203	+	Silent	SNP	T	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr19:30477203T>C	uc002nsr.2	+	4	276	c.246T>C	c.(244-246)CCT>CCC	p.P82P	C19orf2_uc002nsq.2_Silent_p.P64P|C19orf2_uc002nss.2_Silent_p.P42P|C19orf2_uc002nst.2_Silent_p.P6P	NM_003796	NP_003787	O94763	RMP_HUMAN	RPB5-mediating protein isoform a	82					protein folding|regulation of transcription from RNA polymerase II promoter|response to virus	DNA-directed RNA polymerase II, core complex|prefoldin complex	transcription corepressor activity|unfolded protein binding			ovary(1)|kidney(1)	2	Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)	Hepatocellular(1079;0.137)|Renal(1328;0.228)	STAD - Stomach adenocarcinoma(5;5.36e-06)|Lung(7;0.0144)|LUAD - Lung adenocarcinoma(5;0.115)	STAD - Stomach adenocarcinoma(1328;0.18)		CATTTGGCCCTTTTGCCTTCA	0.363000													3	96	---	---	---	---	0	0	0.004672	0	0
CEACAM5	1048	broad.mit.edu	37	19	42224846	42224846	+	Silent	SNP	G	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr19:42224846G>A	uc002ork.2	+	8	1897	c.1776G>A	c.(1774-1776)GGG>GGA	p.G592G	CEACAM5_uc002orj.1_Silent_p.G591G|CEACAM5_uc002orl.2_Silent_p.G592G	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	592	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TTCCAGATGGGCCGGACACCC	0.557000													98	147	---	---	---	---	0	0	0.003610	0	0
SLC3A1	6519	broad.mit.edu	37	2	44527120	44527120	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr2:44527120G>A	uc002ruc.3	+	5	980	c.902G>A	c.(901-903)CGG>CAG	p.R301Q	SLC3A1_uc002rty.2_Missense_Mutation_p.R301Q|SLC3A1_uc002rtz.2_Missense_Mutation_p.R301Q|SLC3A1_uc002rua.2_Missense_Mutation_p.R301Q|SLC3A1_uc002rub.2_Missense_Mutation_p.R301Q|SLC3A1_uc002rud.3_Missense_Mutation_p.R23Q	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	301	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	GAAATTTTACGGTTCTGGCTC	0.363000													24	104	---	---	---	---	0	0	0.003954	0	0
FETUB	26998	broad.mit.edu	37	3	186370224	186370224	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr3:186370224A>G	uc010hyq.2	+	8	1214	c.953A>G	c.(952-954)AAG>AGG	p.K318R	FETUB_uc011brz.1_Missense_Mutation_p.K170R|FETUB_uc003fqn.2_Missense_Mutation_p.K318R|FETUB_uc003fqo.2_Missense_Mutation_p.K213R|FETUB_uc010hyr.2_Missense_Mutation_p.K281R|FETUB_uc010hys.2_Missense_Mutation_p.K170R|FETUB_uc003fqp.3_Missense_Mutation_p.K253R	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	318						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		TCCCAGGAAAAGGGCCCTCAG	0.527000													3	194	---	---	---	---	0	0	0.004672	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701327	195701327	+	Silent	SNP	T	C	C	rs148798763	by1000genomes	TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr3:195701327T>C	uc011btq.1	-	8	1166	c.537A>G	c.(535-537)CTA>CTG	p.L179L	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CCAGGTCCAATAGCGAGTTTG	0.597000													3	130	---	---	---	---	0	0	0.004672	0	0
UBA6	55236	broad.mit.edu	37	4	68500218	68500218	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr4:68500218C>G	uc003hdg.3	-	21	1913	c.1861G>C	c.(1861-1863)GAA>CAA	p.E621Q	UBA6_uc003hdh.1_Missense_Mutation_p.E147Q	NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	621					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						AATGGTATTTCCTCTTCTGGG	0.328000													7	47	---	---	---	---	0	0	0.001984	0	0
ANKS1A	23294	broad.mit.edu	37	6	34985340	34985340	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr6:34985340G>A	uc003ojx.3	+	11	1656	c.1514G>A	c.(1513-1515)GGC>GAC	p.G505D	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.G45D|ANKS1A_uc010jvp.1_Intron	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	505						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CTCCTCCACGGCTCCTCCCCG	0.701000													18	38	---	---	---	---	0	0	0.006122	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				30	44	---	---	---	---	0	0	0.002096	0	0
SLC39A14	23516	broad.mit.edu	37	8	22275185	22275185	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr8:22275185A>T	uc003xbq.3	+	8	1344	c.1169A>T	c.(1168-1170)AAC>ATC	p.N390I	SLC39A14_uc011kzg.1_Missense_Mutation_p.N390I|SLC39A14_uc003xbp.3_Missense_Mutation_p.N390I|SLC39A14_uc011kzh.1_Missense_Mutation_p.N390I	NM_001128431	NP_001121903	Q15043	S39AE_HUMAN	solute carrier family 39 (zinc transporter),	390	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lamellipodium|plasma membrane	zinc ion transmembrane transporter activity				0				Colorectal(74;0.019)|COAD - Colon adenocarcinoma(73;0.0731)		ATCCTGCTCAACGCTGGGATG	0.463000													61	84	---	---	---	---	0	0	0.003610	0	0
GPR124	25960	broad.mit.edu	37	8	37698636	37698636	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr8:37698636C>T	uc003xkj.2	+	19	3143	c.2780C>T	c.(2779-2781)GCC>GTC	p.A927V	GPR124_uc010lvy.2_Missense_Mutation_p.A710V	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	927	Helical; Name=5; (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			AGCCTTGGCGCCTTCTACATC	0.627000													5	186	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	MT	9047	9047	+	RNA	SNP	T	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chrM:9047T>C	uc011mfi.1	+	1		c.385T>C			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		CATGCACCTAATTGGAAGCGC	0.448000													46	1	---	---	---	---	0	0	0.003610	0	0
MAP7D2	256714	broad.mit.edu	37	X	20029036	20029036	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chrX:20029036G>A	uc004czr.1	-	15	2103	c.2084C>T	c.(2083-2085)CCC>CTC	p.P695L	MAP7D2_uc004czq.1_Missense_Mutation_p.P580L|MAP7D2_uc011mji.1_Missense_Mutation_p.P643L|MAP7D2_uc010nfo.1_Missense_Mutation_p.P736L|MAP7D2_uc011mjj.1_Missense_Mutation_p.P650L	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	695										ovary(2)|breast(1)	3						GAATGTCGGGGGACCAGTGAA	0.463000													53	84	---	---	---	---	0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	10	42672240	42672241	+	IGR	INS	-	TAAG	TAAG	rs71529068		TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr10:42672240_42672241insTAAG								None (None upstream) : LOC441666 (155074 downstream)																							TGGCACATATTTTTGTTACCTC	0.366													2	4	---	---	---	---					
NF1P1	440225	broad.mit.edu	37	15	21136692	21136693	+	5'Flank	DEL	CA	-	-			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr15:21136692_21136693delCA	uc001ytv.1	-											Human NF1-related locus DNA in A9 mouse DNA background.												0						TTTTTGAAGCCACACACACACA	0.371													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46407470	46407470	+	IGR	DEL	G	-	-	rs148177170		TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr16:46407470delG								None (None upstream) : ANKRD26P1 (95779 downstream)																							gattctatttgattcaattgg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18514668	18514668	+	IGR	DEL	A	-	-	rs113313371		TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr18:18514668delA								None (None upstream) : ROCK1 (15037 downstream)																							taaaatctagacagaggcact	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	21817619	21817619	+	IGR	DEL	C	-	-			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr19:21817619delC								ZNF429 (78551 upstream) : ZNF100 (89225 downstream)																							aaaacaaaaacaaaacaaaaa	0.134													2	4	---	---	---	---					
PNMAL2	57469	broad.mit.edu	37	19	46997016	46997017	+	In_Frame_Ins	INS	-	CGGCCT	CGGCCT	rs147338403	by1000genomes	TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr19:46997016_46997017insCGGCCT	uc002pes.2	-	1	2153_2154	c.1706_1707insAGGCCG	c.(1705-1707)CGG>CGAGGCCGG	p.569_569R>RGR	uc002peu.1_5'Flank	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	571										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		GAGTGACGCCCCGGCCTCGGCC	0.777													3	5	---	---	---	---					
POMC	5443	broad.mit.edu	37	2	25384456	25384457	+	In_Frame_Ins	INS	-	GCCGCTGCT	GCCGCTGCT	rs10654394	byFrequency	TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr2:25384456_25384457insGCCGCTGCT	uc002rfy.1	-	4	560_561	c.297_298insAGCAGCGGC	c.(295-300)insAGCAGCGGC	p.99_100insSSG	POMC_uc002rfz.1_In_Frame_Ins_p.99_100insSSG|POMC_uc002rga.1_In_Frame_Ins_p.99_100insSSG	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	99_100					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	TTCTGCCCTGCgccgctgctgc	0.624													6	9	---	---	---	---					
RNF215	200312	broad.mit.edu	37	22	30782087	30782089	+	In_Frame_Del	DEL	AGA	-	-	rs5997629	byFrequency	TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr22:30782087_30782089delAGA	uc003ahp.2	-	3	471_473	c.471_473delTCT	c.(469-474)CTTCTC>CTC	p.157_158LL>L	RNF215_uc011akw.1_In_Frame_Del_p.62_63LL>L	NM_001017981	NP_001017981	Q9Y6U7	RN215_HUMAN	ring finger protein 215	157_158	Extracellular (Potential).					integral to membrane	zinc ion binding			central_nervous_system(1)	1						GTTCAGGATGAGAAGAAGCAGGG	0.606													10	12	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	180605412	180605412	+	IGR	DEL	C	-	-			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr3:180605412delC								CCDC39 (149750 upstream) : FXR1 (25040 downstream)																							TTTTTTTTTGCAGTTTTTACA	0.323													2	4	---	---	---	---					
PHACTR2	9749	broad.mit.edu	37	6	144081695	144081696	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr6:144081695_144081696insA	uc003qjq.3	+	5	709_710	c.579_580insA	c.(577-582)ATTAAAfs	p.I193fs	PHACTR2_uc010khh.2_Intron|PHACTR2_uc010khi.2_Frame_Shift_Ins_p.I204fs|PHACTR2_uc003qjr.3_Intron	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	193_194							actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		TGCCTCCCATTAAAAAAAATAC	0.569													7	103	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	44109097	44109098	+	IGR	INS	-	A	A			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chr9:44109097_44109098insA								FAM75A6 (478367 upstream) : FAM27C (881138 downstream)																							ATAAAGGTCTCAAAAATCCAGA	0.347													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11866	11867	+	RNA	INS	-	C	C			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chrM:11866_11867insC	uc004cov.3	+	1		c.1289_1290insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AACCTCGCCTTACCCCCCACTA	0.455													51	21	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	65176645	65176645	+	IGR	DEL	A	-	-			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chrX:65176645delA								MSN (214853 upstream) : MIR223 (62067 downstream)																							AATATCCACCAGTCATCCATG	0.512													7	223	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	134095181	134095181	+	IGR	DEL	A	-	-			TCGA-EL-A3GX-01A-11D-A202-08	TCGA-EL-A3GX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97b18a0-36d2-43ab-88cf-0e188dbf0cac	cc166057-aced-4aaf-80ad-22f9d0414d10	g.chrX:134095181delA								MOSPD1 (45884 upstream) : LOC644538 (29787 downstream)																							atgatcaattaaaaaaaaaaa	0.184													5	8	---	---	---	---					
