Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562000													8	52	---	---	---	---	0	0	0.000151284	0	0
PPM1J	333926	broad.mit.edu	37	1	113256123	113256123	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr1:113256123C>T	uc001ect.1	-	2	464	c.437G>A	c.(436-438)GGC>GAC	p.G146D	PPM1J_uc009wgl.1_5'Flank|PPM1J_uc001ecs.1_5'UTR	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	146	PP2C-like.									breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTTACCTGGCCTCGGCTAGG	0.562000													5	59	---	---	---	---	0	0	8.12818e-05	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			60	88	---	---	---	---	0	0	0.000147903	0	0
LDLRAD3	143458	broad.mit.edu	37	11	36248871	36248871	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr11:36248871G>A	uc001mwk.1	+	5	728	c.691G>A	c.(691-693)GTC>ATC	p.V231I	LDLRAD3_uc010rey.1_Missense_Mutation_p.V182I|LDLRAD3_uc010rez.1_Missense_Mutation_p.V110I|LDLRAD3_uc010rfa.1_Intron	NM_174902	NP_777562	Q86YD5	LRAD3_HUMAN	low density lipoprotein receptor class A domain	231	Cytoplasmic (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1	all_lung(20;0.089)|Lung NSC(22;0.175)|all_epithelial(35;0.177)	all_hematologic(20;0.124)				CCACTGCAACGTCACCTACAA	0.632000													27	56	---	---	---	---	0	0	0.000409698	0	0
PHC1	1911	broad.mit.edu	37	12	9092053	9092053	+	Nonstop_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr12:9092053T>C	uc001qvd.2	+	15	3169	c.3013T>C	c.(3013-3015)TAA>CAA	p.*1005Q	PHC1_uc001qve.2_Nonstop_Mutation_p.*1005Q	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	1005					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						CAAGGAGACCTAAGGTGGCCC	0.478000													2	11	---	---	---	---	0	0	6.4e-05	0	0
FNDC3A	22862	broad.mit.edu	37	13	49772502	49772502	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr13:49772502C>T	uc001vcm.2	+	23	3084	c.2779C>T	c.(2779-2781)CGA>TGA	p.R927*	FNDC3A_uc001vcn.2_Nonsense_Mutation_p.R927*|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcq.2_Nonsense_Mutation_p.R871*	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	927	Fibronectin type-III 7.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		ACTTAGAATACGAATTCAAGC	0.368000													6	64	---	---	---	---	0	0	3.59834e-05	0	0
ATP11A	23250	broad.mit.edu	37	13	113487317	113487317	+	Silent	SNP	G	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr13:113487317G>C	uc001vsi.3	+	14	1627	c.1539G>C	c.(1537-1539)GCG>GCC	p.A513A	ATP11A_uc001vsj.3_Silent_p.A513A|ATP11A_uc001vsm.1_Silent_p.A389A	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	513	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ACGAGGTGGCGCTGGTCGAAG	0.627000													18	180	---	---	---	---	0	0	7.07596e-05	0	0
IL16	3603	broad.mit.edu	37	15	81517814	81517814	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr15:81517814T>C	uc002bgh.3	+	2	450	c.74T>C	c.(73-75)CTC>CCC	p.L25P	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.L25P|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.L67P|IL16_uc002bgg.2_Missense_Mutation_p.L25P	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	25					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TCCCTGATGCTCTGTAATGCT	0.498000													15	25	---	---	---	---	0	0	0.000308642	0	0
SLC35B1	10237	broad.mit.edu	37	17	47780295	47780295	+	Missense_Mutation	SNP	T	C	C	rs80203972	byFrequency	TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr17:47780295T>C	uc002iph.1	-	8	928	c.841A>G	c.(841-843)ATT>GTT	p.I281V	SLC35B1_uc002ipi.1_Missense_Mutation_p.I214V|SLC35B1_uc002ipj.1_Missense_Mutation_p.I157V	NM_005827	NP_005818	P78383	S35B1_HUMAN	solute carrier family 35, member B1	281						endoplasmic reticulum membrane|integral to membrane|microsome	UDP-galactose transmembrane transporter activity				0						GAGGCCAAAATTGTGAAGAAC	0.493000													17	68	---	---	---	---	0	0	9.7654e-05	0	0
KIAA0892	23383	broad.mit.edu	37	19	19446536	19446536	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr19:19446536T>C	uc002nmk.3	+	2	325	c.286T>C	c.(286-288)TCA>CCA	p.S96P		NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	96	Sufficient for interaction with NIPBL.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						GTGGTTGATATCACAGCAAGT	0.438000													24	68	---	---	---	---	0	0	0.000117367	0	0
LILRA2	11027	broad.mit.edu	37	19	55085362	55085362	+	Missense_Mutation	SNP	C	T	T	rs145704089	byFrequency	TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr19:55085362C>T	uc002qgg.3	+	1	106	c.17C>T	c.(16-18)ACG>ATG	p.T6M	LILRA2_uc010ern.2_Missense_Mutation_p.T6M|LILRA2_uc002qgf.2_Missense_Mutation_p.T6M|LILRA2_uc010yfe.1_Missense_Mutation_p.T6M|LILRA2_uc010yff.1_Missense_Mutation_p.T6M|LILRA2_uc010ero.2_Missense_Mutation_p.T6M|LILRA2_uc010yfg.1_Missense_Mutation_p.T6M	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	6					defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CCCATCCTCACGGTCCTGATC	0.602000													28	83	---	---	---	---	0	0	0.000147802	0	0
NLRP4	147945	broad.mit.edu	37	19	56373368	56373368	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr19:56373368G>A	uc002qmd.3	+	5	2451	c.2029G>A	c.(2029-2031)GTT>ATT	p.V677I	NLRP4_uc002qmf.2_Missense_Mutation_p.V602I|NLRP4_uc010etf.2_Missense_Mutation_p.V508I	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	677							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AATAAATAACGTTTCCTTTTC	0.423000													33	63	---	---	---	---	0	0	0.00058488	0	0
MTIF2	4528	broad.mit.edu	37	2	55470598	55470598	+	Silent	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr2:55470598T>C	uc002ryn.2	-	13	2255	c.1518A>G	c.(1516-1518)AAA>AAG	p.K506K	MTIF2_uc010yox.1_Silent_p.K175K|MTIF2_uc002ryo.2_Silent_p.K506K	NM_001005369	NP_001005369	P46199	IF2M_HUMAN	mitochondrial translational initiation factor 2	506					regulation of translational initiation	mitochondrion	GTP binding|GTPase activity|ribosomal small subunit binding|translation initiation factor activity			ovary(1)	1						CCCTTTTCTCTTTTGGCTTTA	0.313000													3	89	---	---	---	---	0	0	0.00024832	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													3	79	---	---	---	---	0	0	6.4e-05	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	G	G	rs115341812	by1000genomes	TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567000													4	45	---	---	---	---	0	0	0.00024832	0	0
STK25	10494	broad.mit.edu	37	2	242439602	242439602	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr2:242439602T>C	uc002wbm.2	-	4	684	c.413A>G	c.(412-414)CAC>CGC	p.H138R	STK25_uc002wbk.2_5'Flank|STK25_uc002wbl.2_5'Flank|STK25_uc002wbn.2_Missense_Mutation_p.H138R|STK25_uc002wbo.2_Missense_Mutation_p.H61R|STK25_uc010zos.1_Missense_Mutation_p.H44R|STK25_uc010zot.1_Missense_Mutation_p.H64R|STK25_uc002wbp.2_Missense_Mutation_p.H138R|STK25_uc010fzo.2_Missense_Mutation_p.H61R|STK25_uc010zou.1_Missense_Mutation_p.H44R|STK25_uc010zov.1_Missense_Mutation_p.H44R|STK25_uc010zow.1_Missense_Mutation_p.H138R	NM_006374	NP_006365	O00506	STK25_HUMAN	serine/threonine kinase 25	138	Protein kinase.				response to oxidative stress|signal transduction	Golgi apparatus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;8.24e-34)|all cancers(36;3.46e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.1e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		GATGTCTCGGTGGATCTTGCG	0.582000													5	57	---	---	---	---	0	0	1.23904e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29625947	29625947	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr20:29625947T>C	uc010ztl.1	+	2	133	c.101T>C	c.(100-102)ATT>ACT	p.I34T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCAGATGCAATTGGACCAAGA	0.343000													3	32	---	---	---	---	0	0	0.00024832	0	0
DIDO1	11083	broad.mit.edu	37	20	61524262	61524262	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr20:61524262G>A	uc002ydr.1	-	13	3418	c.3154C>T	c.(3154-3156)CGA>TGA	p.R1052*	DIDO1_uc002yds.1_Nonsense_Mutation_p.R1052*|DIDO1_uc002ydt.1_Nonsense_Mutation_p.R1052*|DIDO1_uc002ydu.1_Nonsense_Mutation_p.R1052*	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1052					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTGCTGAGTCGAGACAAAAAG	0.423000													15	41	---	---	---	---	0	0	0.000219431	0	0
CNTN3	5067	broad.mit.edu	37	3	74315640	74315640	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr3:74315640C>G	uc003dpm.1	-	21	3058	c.2978G>C	c.(2977-2979)CGA>CCA	p.R993P		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	993					cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		ACTGGTTATTCGTGGAATCCT	0.428000													3	73	---	---	---	---	0	0	6.4e-05	0	0
FAM86D	692099	broad.mit.edu	37	3	75476630	75476630	+	Silent	SNP	T	G	G			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr3:75476630T>G	uc003dpp.3	-	6	794	c.435A>C	c.(433-435)GTA>GTC	p.V145V	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_Silent_p.V53V|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						GGACCGTCGCTACGTCCCAGT	0.582000													4	28	---	---	---	---	0	0	0.00024832	0	0
ADH4	127	broad.mit.edu	37	4	100047817	100047817	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr4:100047817T>A	uc003hun.2	-	8	1122	c.1046A>T	c.(1045-1047)GAT>GTT	p.D349V	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.D368V	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	349					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	CACCAGTGCATCCAGATTGAA	0.373000													20	56	---	---	---	---	0	0	0.000132079	0	0
FBN2	2201	broad.mit.edu	37	5	127638774	127638774	+	Silent	SNP	A	G	G			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr5:127638774A>G	uc003kuu.2	-	46	6247	c.5808T>C	c.(5806-5808)GAT>GAC	p.D1936D		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1936	EGF-like 32; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCTCGCACTCATCAACATCTA	0.338000													27	40	---	---	---	---	0	0	0.000117367	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516258	140516258	+	Silent	SNP	C	T	T			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr5:140516258C>T	uc003liq.2	+	1	1459	c.1242C>T	c.(1240-1242)GCC>GCT	p.A414A		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	414	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAGCCAAGCCGAGTACAACA	0.498000													42	72	---	---	---	---	0	0	0.000374591	0	0
CLDN15	24146	broad.mit.edu	37	7	100880845	100880845	+	Silent	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr7:100880845T>C	uc003uyg.1	-	1	272	c.18A>G	c.(16-18)GAA>GAG	p.E6E	CLDN15_uc003uyh.1_Silent_p.E6E|CLDN15_uc003uyi.2_Silent_p.E6E	NM_014343	NP_055158	P56746	CLD15_HUMAN	claudin 15	6	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					AGCCAAAGGTTTCCACAGCCA	0.622000													4	38	---	---	---	---	0	0	0.00024832	0	0
SUSD1	64420	broad.mit.edu	37	9	114886546	114886546	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr9:114886546T>C	uc004bfu.2	-	6	918	c.877A>G	c.(877-879)ACA>GCA	p.T293A	SUSD1_uc010mui.2_Missense_Mutation_p.T293A|SUSD1_uc010muj.2_Missense_Mutation_p.T293A	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	293	Sushi 2.|Extracellular (Potential).					integral to membrane	calcium ion binding				0						CCTGTGCATGTTAAAGTACTT	0.507000													4	147	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	1	227695183	227695184	+	IGR	INS	-	GGA	GGA			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr1:227695183_227695184insGGA								CDC42BPA (189357 upstream) : ZNF678 (56060 downstream)																							AGTAAGATCTGGGAGTACCCAG	0.540													9	19	---	---	---	---					
BCAT1	586	broad.mit.edu	37	12	24985718	24985719	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr12:24985718_24985719insTC	uc001rgd.3	-	9	1424_1425	c.982_983insGA	c.(982-984)ATGfs	p.M328fs	BCAT1_uc001rgc.2_Frame_Shift_Ins_p.M327fs|BCAT1_uc010six.1_Frame_Shift_Ins_p.M340fs|BCAT1_uc010siy.1_Frame_Shift_Ins_p.M291fs|BCAT1_uc001rge.3_Frame_Shift_Ins_p.M267fs	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	328					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	AGAGCCAAACATCTCTCTCACT	0.431													9	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33070215	33070216	+	IGR	INS	-	T	T			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr16:33070215_33070216insT								SLC6A10P (173752 upstream) : MIR1826 (895292 downstream)																							TTTGCCCCCCCGTCGCCGCGGC	0.604													6	6	---	---	---	---					
SARS2	54938	broad.mit.edu	37	19	39422788	39422788	+	5'Flank	DEL	G	-	-	rs57541708		TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr19:39422788delG	uc002oka.2	-						SARS2_uc002ojz.2_5'Flank|SARS2_uc010xup.1_5'Flank|SARS2_uc002okb.2_5'Flank|SARS2_uc010xuq.1_Intron|SARS2_uc010xur.1_5'Flank|SARS2_uc010xus.1_5'Flank|MRPS12_uc002okc.2_Intron|MRPS12_uc002okd.2_Intron|MRPS12_uc002oke.2_Intron	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor						seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			aaaaaaaaaagaaaaaaaaaa	0.134													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	5513458	5513459	+	IGR	DEL	AA	-	-			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr20:5513458_5513459delAA								LOC149837 (28216 upstream) : GPCPD1 (11622 downstream)																							aaaaaaaaagaaGGGGTCTTTT	0.248													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16867434	16867434	+	IGR	DEL	C	-	-			TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr22:16867434delC								OR11H1 (417630 upstream) : CCT8L2 (204214 downstream)																							CGGCTTTTTGCCCCCCACCCC	0.682													2	4	---	---	---	---					
C6orf223	221416	broad.mit.edu	37	6	43970504	43970518	+	In_Frame_Del	DEL	GCGGCGGCGGCGGCG	-	-	rs72369323		TCGA-EM-A22J-01A-11D-A17V-08	TCGA-EM-A22J-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	d2ff7369-a4f6-413f-9543-6a17cf47a6fd	e8741687-a6ba-46e2-80d3-37d5de7b5bbd	g.chr6:43970504_43970518delGCGGCGGCGGCGGCG	uc003own.2	+	4	388_402	c.370_384delGCGGCGGCGGCGGCG	c.(370-384)GCGGCGGCGGCGGCGdel	p.AAAAA124del	uc003owm.1_Intron|C6orf223_uc003owo.2_In_Frame_Del_p.AAAAA104del	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	124_128	Ala-rich.										0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			GGTAGAGCGCgcggcggcggcggcggcggcggcgg	0.628													6	5	---	---	---	---					
