Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LRRIQ3	127255	broad.mit.edu	37	1	74492567	74492567	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr1:74492567T>C	uc001dfy.3	-	8	1997	c.1805A>G	c.(1804-1806)GAT>GGT	p.D602G	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	602	Potential.									ovary(2)	2						TGTTTTAGCATCTTGAAGTCT	0.313000													10	18	---	---	---	---	0	0	0.000442599	0	0
AGL	178	broad.mit.edu	37	1	100327958	100327958	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr1:100327958C>T	uc001dsi.1	+	4	839	c.439C>T	c.(439-441)CTT>TTT	p.L147F	AGL_uc001dsj.1_Missense_Mutation_p.L147F|AGL_uc001dsk.1_Missense_Mutation_p.L147F|AGL_uc001dsl.1_Missense_Mutation_p.L147F|AGL_uc001dsm.1_Missense_Mutation_p.L131F|AGL_uc001dsn.1_Missense_Mutation_p.L130F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	147	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GGAAAGCAGACTTAGGGTTGC	0.343000													64	58	---	---	---	---	0	0	0.000781405	0	0
OR2L13	284521	broad.mit.edu	37	1	248263034	248263034	+	Silent	SNP	C	T	T			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr1:248263034C>T	uc001ids.2	+	3	694	c.357C>T	c.(355-357)TAC>TAT	p.Y119Y		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CCATGGCCTACGACCGTTATT	0.512000													37	161	---	---	---	---	0	0	0.000814825	0	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771000													9	42	---	---	---	---	0	0	0.000673444	0	0
SEMA7A	8482	broad.mit.edu	37	15	74708936	74708936	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr15:74708936G>C	uc002axv.2	-	7	821	c.781C>G	c.(781-783)CGT>GGT	p.R261G	SEMA7A_uc010ulk.1_Missense_Mutation_p.R96G|SEMA7A_uc010ull.1_Missense_Mutation_p.R247G	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	261	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						TGGGCCACACGGGACACATTG	0.557000													3	62	---	---	---	---	0	0	6.4e-05	0	0
DIDO1	11083	broad.mit.edu	37	20	61512289	61512289	+	Silent	SNP	C	G	G			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr20:61512289C>G	uc002ydr.1	-	16	5283	c.5019G>C	c.(5017-5019)CCG>CCC	p.P1673P	DIDO1_uc002yds.1_Silent_p.P1673P	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1673					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CGTGCTGCAGCGGGAAGCCGG	0.697000													3	32	---	---	---	---	0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	22	18845998	18845998	+	RNA	SNP	G	A	A			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr22:18845998G>A	uc002zoe.2	+	5		c.2360G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CCCGTCCTGCGCAGGCCGACA	0.607000													5	32	---	---	---	---	0	0	8.12818e-05	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	30	---	---	---	---	0	0	6.4e-05	0	0
GABRR2	2570	broad.mit.edu	37	6	89967652	89967652	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr6:89967652C>G	uc003pnb.2	-	9	1218	c.1210G>C	c.(1210-1212)GGA>CGA	p.G404R	GABRR2_uc011dzx.1_Missense_Mutation_p.G280R	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	404	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		CTGTAGCTTCCATCCAGCATC	0.502000													11	23	---	---	---	---	0	0	0.000673444	0	0
INTS4L1	285905	broad.mit.edu	37	7	64639752	64639752	+	RNA	SNP	A	T	T			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr7:64639752A>T	uc003ttw.2	+	5		c.635A>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						TTGATTTCCTAGTTGACATGT	0.443000													5	23	---	---	---	---	0	0	8.12818e-05	0	0
EIF1AX	1964	broad.mit.edu	37	X	20156732	20156732	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chrX:20156732C>G	uc004czt.2	-	2	233	c.25G>C	c.(25-27)GGT>CGT	p.G9R	SCARNA9L_uc010nfp.2_5'Flank	NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	9						cytosol	translation initiation factor activity			ovary(1)	1						CTGTTTTTACCTCCTTTACCT	0.313000													62	14	---	---	---	---	0	0	0.000781405	0	0
OR2T29	343563	broad.mit.edu	37	1	248722428	248722429	+	Frame_Shift_Ins	INS	-	CG	CG			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr1:248722428_248722429insCG	uc001ieo.1	-	1	346_347	c.346_347insCG	c.(346-348)ATGfs	p.M116fs		NM_001004694	NP_001004694	Q8NH02	O2T29_HUMAN	olfactory receptor, family 2, subfamily T,	122	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTCATAGGCCATGGTGGCTAGA	0.540													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383716	42383717	+	IGR	INS	-	G	G	rs145968937		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42383716_42383717insG								None (None upstream) : LOC441666 (443598 downstream)																							tggaatcaaaataaccatcatc	0.000													7	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384760	42384808	+	IGR	DEL	AATCGAATGGAATCATCAAATGGAATCAGATGGAATCATCATCAAATGA	-	-	rs147070410		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42384760_42384808delAATCGAATGGAATCATCAAATGGAATCAGATGGAATCATCATCAAATGA								None (None upstream) : LOC441666 (442507 downstream)																							catcgaatggaatcgaatggaatcatcaaatggaatcagatggaatcatcatcaaatgaaatcgaatag	0.000													130	421	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													8	1109	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													8	930	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42596908	42596910	+	IGR	DEL	TCA	-	-	rs74210869		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42596908_42596910delTCA								None (None upstream) : LOC441666 (230405 downstream)																							ggaatcatcttcaaatggaaagg	0.000													19	1082	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599952	42599952	+	IGR	DEL	G	-	-	rs36165691		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:42599952delG								None (None upstream) : LOC441666 (227363 downstream)																							atcatctaatggaatggaatg	0.000													7	1000	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	99068998	99068998	+	IGR	DEL	T	-	-	rs140894848		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr10:99068998delT								ARHGAP19 (16585 upstream) : FRAT1 (10024 downstream)																							GTCCCCAGGAttttttttttt	0.254													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	640743	640743	+	IGR	DEL	G	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr11:640743delG								DRD4 (40 upstream) : DEAF1 (3482 downstream)																							GATGGGGAGTGGGGAAGAGGG	0.597													3	6	---	---	---	---					
DCHS1	8642	broad.mit.edu	37	11	6662746	6662748	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr11:6662746_6662748delCAG	uc001mem.1	-	2	507_509	c.97_99delCTG	c.(97-99)CTGdel	p.L33del		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	33					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCCAGCCCCcagcagcagcagc	0.527													3	6	---	---	---	---					
CCL22	6367	broad.mit.edu	37	16	57392508	57392508	+	5'Flank	DEL	G	-	-	rs41411344	byFrequency	TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr16:57392508delG	uc002elh.2	+							NM_002990	NP_002981	O00626	CCL22_HUMAN	small inducible cytokine A22 precursor						cell-cell signaling|chemotaxis|immune response|inflammatory response|response to virus|signal transduction	extracellular space	chemokine activity				0						ACAGAGTTGAGGGGGGGTCCC	0.473													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21518762	21518763	+	IGR	DEL	AT	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr17:21518762_21518763delAT								C17orf51 (41031 upstream) : FAM27L (306607 downstream)																							TCTCTGTCACATATTTTTTTCT	0.307													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	21561692	21561692	+	IGR	DEL	G	-	-	rs79167069		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr17:21561692delG								C17orf51 (83961 upstream) : FAM27L (263678 downstream)																							CCTGGGGCCCGGGGCCTCAGC	0.706													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													8	787	---	---	---	---					
MPO	4353	broad.mit.edu	37	17	56350266	56350266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr17:56350266delG	uc002ivu.1	-	10	1812	c.1635delC	c.(1633-1635)CCCfs	p.P545fs		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	545					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCCGGAGGATGGGGTCAATGC	0.572													98	122	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27731986	27731989	+	IGR	DEL	TGTT	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr19:27731986_27731989delTGTT								None (None upstream) : LOC148189 (549413 downstream)																							ggaaacactctgtttgtaaagtct	0.000													11	1025	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr19:27732215_27732216insC								None (None upstream) : LOC148189 (549186 downstream)																							agaaaaggaaatatcttcgtat	0.000													30	2126	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													12	631	---	---	---	---					
LILRB1	10859	broad.mit.edu	37	19	55143156	55143157	+	Frame_Shift_Del	DEL	TG	-	-	rs12462774	by1000genomes	TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr19:55143156_55143157delTG	uc002qgj.2	+	5	616_617	c.276_277delTG	c.(274-279)CATGCAfs	p.H92fs	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Frame_Shift_Del_p.H92fs|LILRB1_uc002qgk.2_Frame_Shift_Del_p.H92fs|LILRB1_uc002qgm.2_Frame_Shift_Del_p.H92fs|LILRB1_uc010erq.2_Frame_Shift_Del_p.H92fs|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	92_93	Ig-like C2-type 1.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCTGGGAACATGCAGGGCGGTA	0.554										HNSCC(37;0.09)			10	124	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	44119407	44119407	+	IGR	DEL	A	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr20:44119407delA								WFDC2 (9236 upstream) : SPINT3 (21694 downstream)																							tctgtctctgaaaaaaaaaaa	0.184													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778285	58778285	+	IGR	DEL	C	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr6:58778285delC								GUSBL2 (490561 upstream) : None (None downstream)																							atcttataaacccagacagaa	0.000													8	455	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	110821007	110821008	+	IGR	INS	-	C	C			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr6:110821007_110821008insC								SLC22A16 (23163 upstream) : CDK19 (110173 downstream)																							gtgagtaagaaggggagctcag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	156919560	156919562	+	IGR	DEL	GAG	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr6:156919560_156919562delGAG								MIR1202 (651547 upstream) : ARID1B (179524 downstream)																							ggaggaggaagaggaggaggagg	0.394													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969534	61969534	+	IGR	DEL	A	-	-	rs56839084		TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr7:61969534delA								None (None upstream) : LOC643955 (782138 downstream)																							taataaccagacagaatcatt	0.000													7	1030	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970266	61970266	+	IGR	DEL	T	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr7:61970266delT								None (None upstream) : LOC643955 (781406 downstream)																							actcacagagtttaacctttc	0.000													7	283	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	101438869	101438870	+	IGR	INS	-	ACC	ACC			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr8:101438869_101438870insACC								RNF19A (116542 upstream) : ANKRD46 (83117 downstream)																							ccaccatcattaccaccaccac	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	45362789	45362791	+	IGR	DEL	TTC	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chr9:45362789_45362791delTTC								FAM27C (371298 upstream) : FAM27A (364238 downstream)																							CTTCAGCCTGTTCTTCTTCAGTC	0.468													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	48307150	48307150	+	IGR	DEL	T	-	-			TCGA-EM-A2CL-01A-11D-A17V-08	TCGA-EM-A2CL-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	8ede121e-331f-434e-a551-ffc6fc01ce0b	49a37ba7-1dd0-4758-bcf0-49e779511d7f	g.chrX:48307150delT								SSX4 (54365 upstream) : SLC38A5 (9778 downstream)																							ccggtcTGGATTTTTTTTTTT	0.209													3	4	---	---	---	---					
