Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RIMS3	9783	broad.mit.edu	37	1	41098767	41098767	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr1:41098767C>T	uc001cfu.1	-	5	915	c.446G>A	c.(445-447)CGA>CAA	p.R149Q	RIMS3_uc001cfv.1_Missense_Mutation_p.R149Q	NM_014747	NP_055562	Q9UJD0	RIMS3_HUMAN	regulating synaptic membrane exocytosis 3	149					neurotransmitter transport	cell junction|synapse					0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.47e-17)			CAGTGTCTGTCGCCCCACAAT	0.592000													76	69	---	---	---	---	0	0	1	0	0
VCAM1	7412	broad.mit.edu	37	1	101188796	101188796	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr1:101188796G>T	uc001dti.2	+	3	681	c.561G>T	c.(559-561)GAG>GAT	p.E187D	VCAM1_uc001dtj.2_Missense_Mutation_p.E187D|VCAM1_uc010ouj.1_Missense_Mutation_p.E125D	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	187	Ig-like C2-type 2.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CTGTCATTGAGGATATTGGAA	0.418000													19	13	---	---	---	---	3.51602e-12	4.26945e-12	1	1	0
CEPT1	10390	broad.mit.edu	37	1	111690383	111690383	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr1:111690383C>T	uc001eah.1	+	2	255	c.47C>T	c.(46-48)CCG>CTG	p.P16L	CEPT1_uc001eag.2_Missense_Mutation_p.P16L|CEPT1_uc001eai.1_Missense_Mutation_p.P16L|CEPT1_uc001eaj.1_Missense_Mutation_p.P16L	NM_001007794	NP_001007795	Q9Y6K0	CEPT1_HUMAN	choline/ethanolaminephosphotransferase	16						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	diacylglycerol cholinephosphotransferase activity|ethanolaminephosphotransferase activity|metal ion binding				0		all_cancers(81;2.27e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0173)|Colorectal(144;0.0375)|all cancers(265;0.0701)|LUSC - Lung squamous cell carcinoma(189;0.0888)|Epithelial(280;0.103)|COAD - Colon adenocarcinoma(174;0.141)	Choline(DB00122)	GATTCTCACCCGGAGTCCCCA	0.393000													5	45	---	---	---	---	0	0	1	0	0
TSNAX	7257	broad.mit.edu	37	1	231696959	231696959	+	Silent	SNP	A	G	G			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr1:231696959A>G	uc001huw.2	+	5	611	c.453A>G	c.(451-453)CAA>CAG	p.Q151Q	TSNAX-DISC1_uc010pwe.1_5'UTR|TSNAX-DISC1_uc010pwf.1_Intron|TSNAX-DISC1_uc010pwg.1_Intron|TSNAX-DISC1_uc010pwh.1_5'UTR|TSNAX-DISC1_uc010pwi.1_5'UTR|TSNAX-DISC1_uc010pwj.1_5'UTR|TSNAX-DISC1_uc010pwk.1_5'UTR|TSNAX-DISC1_uc010pwl.1_Intron	NM_005999	NP_005990	Q99598	TSNAX_HUMAN	translin-associated factor X	151	Interaction with C1D.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus|perinuclear region of cytoplasm	protein transporter activity|sequence-specific DNA binding				0		all_cancers(173;0.0395)|Acute lymphoblastic leukemia(190;3.76e-06)|Prostate(94;0.116)				TTAATAAACAATTGATATTTA	0.289000													13	30	---	---	---	---	0	0	1	0	0
HELLS	3070	broad.mit.edu	37	10	96361328	96361328	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr10:96361328A>G	uc001kjt.2	+	22	2571	c.2466A>G	c.(2464-2466)ATA>ATG	p.I822M	HELLS_uc001kjs.2_Missense_Mutation_p.I806M|HELLS_uc009xul.2_Missense_Mutation_p.I724M|HELLS_uc009xum.2_Missense_Mutation_p.I692M|HELLS_uc009xun.2_Missense_Mutation_p.I698M|HELLS_uc009xuo.2_Missense_Mutation_p.I868M|HELLS_uc001kju.2_Missense_Mutation_p.I461M|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.I684M|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	822					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		AGATGGGGATATTCAAGATAT	0.303000													9	50	---	---	---	---	0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1267146	1267146	+	Silent	SNP	G	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr11:1267146G>A	uc009ycr.1	+	49	10911	c.10785G>A	c.(10783-10785)CCG>CCA	p.P3595P	MUC5B_uc001ltb.2_Silent_p.P3015P	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3012	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGGCCATCCCGTCCTCCACCC	0.642000													31	82	---	---	---	---	0	0	1	0	0
SLC25A45	283130	broad.mit.edu	37	11	65144072	65144072	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr11:65144072T>C	uc001odp.1	-	6	1095	c.673A>G	c.(673-675)ATC>GTC	p.I225V	SLC25A45_uc009yqi.1_Missense_Mutation_p.I163V|SLC25A45_uc001odq.1_Missense_Mutation_p.I201V|SLC25A45_uc001odr.1_Missense_Mutation_p.I225V|SLC25A45_uc001ods.1_Missense_Mutation_p.I183V|SLC25A45_uc001odt.1_Missense_Mutation_p.I183V	NM_001077241	NP_001070709	Q8N413	S2545_HUMAN	solute carrier family 25, member 45 isoform b	225	Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						CGGGACTTGATCATGTCTAAG	0.617000													29	33	---	---	---	---	0	0	1	0	0
PIH1D2	120379	broad.mit.edu	37	11	111942472	111942472	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr11:111942472T>C	uc001pmq.3	-	3	270	c.188A>G	c.(187-189)GAA>GGA	p.E63G	PIH1D2_uc009yyl.2_Missense_Mutation_p.E63G|PIH1D2_uc001pmp.3_Missense_Mutation_p.E63G|PIH1D2_uc010rws.1_Missense_Mutation_p.E63G|C11orf57_uc001pmu.2_5'Flank|C11orf57_uc001pmw.3_5'Flank|C11orf57_uc001pmt.3_5'Flank|C11orf57_uc001pmr.3_5'Flank|C11orf57_uc001pmv.3_5'Flank|C11orf57_uc001pms.3_5'Flank	NM_138789	NP_620144	Q8WWB5	PIHD2_HUMAN	PIH1 domain containing 2 isoform 1	63										ovary(1)	1		all_cancers(61;1.09e-14)|all_epithelial(67;7.64e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.19e-07)|BRCA - Breast invasive adenocarcinoma(274;6.17e-07)|all cancers(92;6.18e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0508)		AAGTATTTTTTCTTTTGGTTT	0.303000													10	23	---	---	---	---	0	0	1	0	0
PCID2	55795	broad.mit.edu	37	13	113854783	113854783	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr13:113854783C>A	uc010tju.1	-	2	165	c.84G>T	c.(82-84)TTG>TTT	p.L28F	PCID2_uc010tjv.1_Missense_Mutation_p.L28F|PCID2_uc010tjw.1_Missense_Mutation_p.L28F|PCID2_uc001vte.2_5'UTR|PCID2_uc001vtd.2_5'UTR|PCID2_uc001vtf.2_5'UTR|PCID2_uc001vtg.1_RNA	NM_001127203	NP_001120675	Q5JVF3	PCID2_HUMAN	PCI domain containing 2	28					negative regulation of apoptosis|negative regulation of cysteine-type endopeptidase activity|positive regulation of mitotic cell cycle spindle assembly checkpoint|positive regulation of transcription, DNA-dependent|regulation of mRNA stability|spleen development		protein binding				0	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.216)|all_epithelial(44;0.234)	all cancers(43;0.104)			TAAAAGACACCAACTCTGCAC	0.423000													5	63	---	---	---	---	0.00198382	0.00204393	1	1	0
Unknown	0	broad.mit.edu	37	15	102292839	102292839	+	Splice_Site	SNP	C	A	A	rs62026971		TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr15:102292839C>A	uc010usj.1	+	4	484	c.425_splice	c.e4+2	p.R142_splice	uc002bxo.2_5'Flank|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CTCGTGGAGGCGTCGGCAGAG	0.597000													3	10	---	---	---	---	0.00024832	0.00026384	1	1	0
AXIN1	8312	broad.mit.edu	37	16	354424	354424	+	Silent	SNP	C	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr16:354424C>T	uc002cgp.1	-	5	1311	c.1134G>A	c.(1132-1134)CCG>CCA	p.P378P	AXIN1_uc002cgq.1_Silent_p.P378P	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	378	Interaction with GSK3B (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				GGACCTCCTTCGGCACCCGGT	0.627000													3	37	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	21730916	21730916	+	Missense_Mutation	SNP	G	T	T	rs111245273	by1000genomes	TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr17:21730916G>T	uc002gyy.3	+	2	343	c.218G>T	c.(217-219)CGG>CTG	p.R73L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCGGAGAGGTGGT	0.552000													4	68	---	---	---	---	0.00024832	0.00026384	1	1	0
AMAC1	146861	broad.mit.edu	37	17	33521307	33521307	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr17:33521307T>C	uc002hjd.2	-	1	106	c.20A>G	c.(19-21)TAT>TGT	p.Y7C		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	7						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CTGGTTGAAATAGGGGTGACT	0.632000													3	45	---	---	---	---	0	0	1	0	0
P4HB	5034	broad.mit.edu	37	17	79813410	79813410	+	Silent	SNP	C	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr17:79813410C>A	uc002kbn.1	-	3	602	c.405G>T	c.(403-405)CCG>CCT	p.P135P	P4HB_uc002kbm.1_5'UTR	NM_000918	NP_000909	P07237	PDIA1_HUMAN	prolyl 4-hydroxylase, beta subunit precursor	135					cell redox homeostasis|glycerol ether metabolic process|lipid metabolic process|lipoprotein metabolic process|peptidyl-proline hydroxylation to 4-hydroxy-L-proline	cell surface|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|extracellular region|melanosome|plasma membrane	electron carrier activity|procollagen-proline 4-dioxygenase activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0509)			TGGTGGCAGCCGGGCCCGTGC	0.592000													3	50	---	---	---	---	0.004672	0.004672	1	1	0
KCNJ14	3770	broad.mit.edu	37	19	48967816	48967816	+	Missense_Mutation	SNP	G	A	A	rs144271715		TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr19:48967816G>A	uc002pje.1	+	3	1498	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K	KCNJ14_uc002pjf.1_Missense_Mutation_p.E365K	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	365	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		CAGTGCTAAGGAGCTGGATGA	0.547000													3	41	---	---	---	---	0	0	1	0	0
CCDC155	147872	broad.mit.edu	37	19	49920492	49920492	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr19:49920492G>A	uc002pnm.1	+	19	1690	c.1516G>A	c.(1516-1518)GGC>AGC	p.G506S	CCDC155_uc010emx.1_Missense_Mutation_p.G477S	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	506						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GAGGGCCTGGGGCCAGCTCTG	0.652000													7	15	---	---	---	---	0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152390825	152390825	+	Silent	SNP	G	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr2:152390825G>A	uc010fnx.2	-	115	16409	c.16218C>T	c.(16216-16218)TAC>TAT	p.Y5406Y	NEB_uc002txr.2_Silent_p.Y1829Y|NEB_uc002txt.3_5'Flank	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5406	Nebulin 147.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AATCAGCTCTGTATTTTTTCT	0.443000													5	72	---	---	---	---	0	0	1	0	0
MFSD6	54842	broad.mit.edu	37	2	191301245	191301245	+	Missense_Mutation	SNP	C	T	T	rs116097269	byFrequency	TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr2:191301245C>T	uc002urz.2	+	3	814	c.490C>T	c.(490-492)CGC>TGC	p.R164C		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	164					transmembrane transport	integral to membrane				ovary(2)	2						ACCAAAGATTCGCCCAACAAC	0.428000													4	78	---	---	---	---	0	0	1	0	0
ANKRD5	63926	broad.mit.edu	37	20	10023795	10023795	+	Silent	SNP	G	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr20:10023795G>A	uc002wno.2	+	4	765	c.372G>A	c.(370-372)CCG>CCA	p.P124P	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.P124P|ANKRD5_uc010gbz.2_5'UTR	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	124							calcium ion binding			ovary(1)|breast(1)	2						GCATTTTACCGACTAAGCGGC	0.378000													23	44	---	---	---	---	0	0	1	0	0
TUBB1	81027	broad.mit.edu	37	20	57597953	57597953	+	Silent	SNP	C	T	T	rs150453159	byFrequency	TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr20:57597953C>T	uc002yak.2	+	2	380	c.111C>T	c.(109-111)CGC>CGT	p.R37R		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	37					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	GGAGCGACCGCGGGGCCTCGG	0.597000													3	46	---	---	---	---	0	0	1	0	0
FAM83F	113828	broad.mit.edu	37	22	40417409	40417409	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr22:40417409G>A	uc003ayk.1	+	4	989	c.895G>A	c.(895-897)GAC>AAC	p.D299N		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	299										breast(1)	1						CGAGGAGGTGGACTTGTACCG	0.592000													13	116	---	---	---	---	0	0	1	0	0
RTP1	132112	broad.mit.edu	37	3	186917353	186917353	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr3:186917353G>T	uc003frg.2	+	2	317	c.287G>T	c.(286-288)TGG>TTG	p.W96L		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	96	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		CACTGCTCCTGGTGCTGGCAC	0.652000													53	50	---	---	---	---	4.88482e-21	6.15126e-21	1	1	0
DFNB31	25861	broad.mit.edu	37	9	117185766	117185766	+	Missense_Mutation	SNP	G	A	A	rs79572315	byFrequency	TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr9:117185766G>A	uc004biz.3	-	7	2103	c.1454C>T	c.(1453-1455)CCG>CTG	p.P485L	DFNB31_uc004bix.2_Missense_Mutation_p.P134L|DFNB31_uc004biy.3_Missense_Mutation_p.P102L|DFNB31_uc004bja.3_Missense_Mutation_p.P485L	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	485					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TAGGTCTTGCGGGGAAATGGT	0.637000													4	74	---	---	---	---	0	0	1	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94643557	94643560	+	Frame_Shift_Del	DEL	GTGA	-	-			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr1:94643557_94643560delGTGA	uc001dqj.3	-	21	3013_3016	c.2644_2647delTCAC	c.(2644-2649)TCACAGfs	p.S882fs	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Frame_Shift_Del_p.S448fs	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	882_883	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		AAGATCTTCTGTGAGTAAGTAATG	0.446													20	85	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	102104601	102104601	+	IGR	DEL	T	-	-			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr10:102104601delT								PKD2L1 (14358 upstream) : SCD (2171 downstream)																							AAAATCACAAttttttttttt	0.164													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	21366464	21366466	+	IGR	DEL	ATG	-	-			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr15:21366464_21366466delATG								NF1P1 (231839 upstream) : LOC646214 (566048 downstream)																							GATGTGGAATATGATGAAGGAGA	0.369													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20416848	20416849	+	IGR	INS	-	A	A			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr17:20416848_20416849insA								LGALS9B (46000 upstream) : CCDC144NL (349861 downstream)																							CAGGCTGAAAGAAAAAAAAAAA	0.554													2	4	---	---	---	---					
WIPF2	147179	broad.mit.edu	37	17	38420969	38420969	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr17:38420969delC	uc002hug.1	+	5	781	c.541delC	c.(541-543)CCCfs	p.P181fs	WIPF2_uc002huh.1_Frame_Shift_Del_p.P31fs|WIPF2_uc010cww.1_Frame_Shift_Del_p.P31fs|WIPF2_uc002hui.1_Frame_Shift_Del_p.P181fs|WIPF2_uc010cwx.1_Intron|WIPF2_uc010cwy.1_Frame_Shift_Del_p.P181fs	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	181	Poly-Pro.					cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TCCCCCACCACCCCCAGGGCG	0.647										HNSCC(43;0.11)			10	62	---	---	---	---					
ZNF407	55628	broad.mit.edu	37	18	72775591	72775592	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr18:72775591_72775592insT	uc002llw.2	+	8	5971_5972	c.5914_5915insT	c.(5914-5916)ATTfs	p.I1972fs		NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1972					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CAAGCAGGAGATTTTAAACCTC	0.614													6	7	---	---	---	---					
PLA2R1	22925	broad.mit.edu	37	2	160801441	160801442	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr2:160801441_160801442insT	uc002ube.1	-	28	4326_4327	c.4119_4120insA	c.(4117-4122)AAAGGCfs	p.K1373fs	PLA2R1_uc010zcp.1_Frame_Shift_Ins_p.K1371fs	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	1373_1374	Extracellular (Potential).|C-type lectin 8.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						CATATAAAGCCTTTTTTTTCTT	0.401													7	118	---	---	---	---					
HCG4	54435	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	-	-	rs146714150		TCGA-EM-A2CO-01A-11D-A19J-08	TCGA-EM-A2CO-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	d31942ef-c251-4444-b743-3463827dc120	d4b5812a-ded5-47da-9681-0da4dac669c7	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	uc003nns.2	-	1		c.478_498delTGCTCCATCCACGGCGCCCGC			uc010jrm.1_In_Frame_Del_p.AGAVDGA111del|uc003nnt.2_In_Frame_Del_p.RAPWMEQ147del|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													4	8	---	---	---	---					
