Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LOC642846	642846	broad.mit.edu	37	12	9463773	9463773	+	RNA	SNP	G	A	A	rs111854872	by1000genomes	TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr12:9463773G>A	uc010sgp.1	+	21		c.2402G>A			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						TAACCTGTGCGGTGTGGTTTC	0.627000													3	63	---	---	---	---	0	0	0.184627	0	0
PRB2	653247	broad.mit.edu	37	12	11546771	11546771	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr12:11546771G>C	uc010shk.1	-	3	276	c.241C>G	c.(241-243)CCA>GCA	p.P81A		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGTGGGGGTGGTCCTTGTGGC	0.612000													5	261	---	---	---	---	0	0	0.217242	0	0
TROAP	10024	broad.mit.edu	37	12	49724313	49724313	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr12:49724313G>T	uc001rtx.3	+	13	1852	c.1685G>T	c.(1684-1686)AGT>ATT	p.S562I	TROAP_uc009zlh.2_Missense_Mutation_p.S562I|TROAP_uc001rty.2_Missense_Mutation_p.S270I	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	562	4 X 33 AA approximate tandem repeats.|Cys-rich.|2.				cell adhesion	cytoplasm				ovary(1)	1						TGCTGTAGGAGTGAGCCTGAG	0.592000													3	54	---	---	---	---	0.00909568	0.00974537	0.150653	1	0
SP1	6667	broad.mit.edu	37	12	53804795	53804795	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr12:53804795A>G	uc001scw.2	+	6	2226	c.2129A>G	c.(2128-2130)AAT>AGT	p.N710S	SP1_uc010sog.1_Missense_Mutation_p.N703S	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	710	Domain D.|VZV IE62-binding.				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		ACCCACCAGAATAAGAAGGGA	0.532000													7	65	---	---	---	---	0	0	0.248553	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623307	21623307	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr14:21623307G>A	uc010tlp.1	-	1	878	c.878C>T	c.(877-879)GCA>GTA	p.A293V		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	293	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		GAGGTGGGATGCACAGGTGGA	0.522000													3	53	---	---	---	---	0	0	0.150653	0	0
CMA1	1215	broad.mit.edu	37	14	24976707	24976707	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr14:24976707T>C	uc001wpp.1	-	2	94	c.64A>G	c.(64-66)ATC>GTC	p.I22V	CMA1_uc010alx.1_Intron	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	22	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		CCCCCGATGATCTCCCCTGGA	0.507000													5	203	---	---	---	---	0	0	0.217242	0	0
ADCK1	57143	broad.mit.edu	37	14	78365449	78365449	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr14:78365449G>C	uc001xui.2	+	6	688	c.589G>C	c.(589-591)GTT>CTT	p.V197L	ADCK1_uc010tvo.1_RNA|ADCK1_uc001xuj.2_Missense_Mutation_p.V129L|ADCK1_uc001xuk.1_Missense_Mutation_p.V71L	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	204	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		TCAGGTGCTCGTTCTGGCTGT	0.507000													48	117	---	---	---	---	0	0	0.870114	0	0
TP53BP1	7158	broad.mit.edu	37	15	43712831	43712831	+	Silent	SNP	G	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr15:43712831G>T	uc001zrs.2	-	21	4486	c.4338C>A	c.(4336-4338)TCC>TCA	p.S1446S	TP53BP1_uc010udp.1_Silent_p.S1446S|TP53BP1_uc001zrq.3_Silent_p.S1451S|TP53BP1_uc001zrr.3_Silent_p.S1451S|TP53BP1_uc010udq.1_Silent_p.S1451S	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1446					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TTCGTCTGGTGGAGTCTGGCA	0.542000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					41	55	---	---	---	---	5.34276e-22	6.54215e-22	0.870114	1	0
PRPF8	10594	broad.mit.edu	37	17	1579616	1579616	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr17:1579616T>C	uc002fte.2	-	17	2551	c.2437A>G	c.(2437-2439)ACA>GCA	p.T813A		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	813						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CAATGCACTGTGGTGGTATAT	0.537000													8	114	---	---	---	---	0	0	0.335167	0	0
Unknown	0	broad.mit.edu	37	17	21730916	21730916	+	Missense_Mutation	SNP	G	T	T	rs111245273	by1000genomes	TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr17:21730916G>T	uc002gyy.3	+	2	343	c.218G>T	c.(217-219)CGG>CTG	p.R73L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCGGAGAGGTGGT	0.552000													4	58	---	---	---	---	0.00909568	0.00974537	0.150653	1	0
CD209	30835	broad.mit.edu	37	19	7810835	7810835	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:7810835T>C	uc002mht.2	-	4	384	c.317A>G	c.(316-318)CAG>CGG	p.Q106R	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.Q82R|CD209_uc002mhr.2_Missense_Mutation_p.Q82R|CD209_uc002mhs.2_Missense_Mutation_p.Q82R|CD209_uc002mhu.2_Missense_Mutation_p.Q106R|CD209_uc010dvq.2_Missense_Mutation_p.Q106R|CD209_uc002mhq.2_Missense_Mutation_p.Q106R|CD209_uc002mhv.2_Missense_Mutation_p.Q82R|CD209_uc002mhx.2_Missense_Mutation_p.Q62R|CD209_uc002mhw.2_Missense_Mutation_p.Q62R|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	106	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCTGGGTCAGCTC	0.562000													5	140	---	---	---	---	0	0	0.184627	0	0
COL5A3	50509	broad.mit.edu	37	19	10071487	10071487	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:10071487C>T	uc002mmq.1	-	66	5017	c.4931G>A	c.(4930-4932)CGC>CAC	p.R1644H		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1644	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GAAGTTCTGGCGAGCTGTGGC	0.607000													4	84	---	---	---	---	0	0	0.150653	0	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413000													3	117	---	---	---	---	0	0	0.248553	0	0
ZNF443	10224	broad.mit.edu	37	19	12542283	12542283	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:12542283A>G	uc002mtu.2	-	4	901	c.703T>C	c.(703-705)TCT>CCT	p.S235P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	235	C2H2-type 4.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						CTGTAAAAAGAAAAGGCTTTA	0.378000													4	84	---	---	---	---	0	0	0.217242	0	0
ZNF208	7757	broad.mit.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:22155896A>C	uc002nqp.2	-	5	1789	c.1640T>G	c.(1639-1641)ATT>AGT	p.I547S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAGACCTTAATAAAGGTTTT	0.398000													3	82	---	---	---	---	0	0	0.150653	0	0
ZNF702P	79986	broad.mit.edu	37	19	53472914	53472914	+	RNA	SNP	A	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:53472914A>G	uc002qan.3	-	4		c.1587T>C				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTGATTTTCAATTAAAAACC	0.338000													3	16	---	---	---	---	0	0	0.184627	0	0
AVP	551	broad.mit.edu	37	20	3065238	3065238	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr20:3065238C>T	uc002whu.2	-	1	133	c.83G>A	c.(82-84)GGC>GAC	p.G28D		NM_000490	NP_000481	P01185	NEU2_HUMAN	arginine vasopressin-neurophysin II	28					cell-cell signaling|ERK1 and ERK2 cascade|generation of precursor metabolites and energy|negative regulation of apoptosis|negative regulation of release of cytochrome c from mitochondria|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|protein kinase C signaling cascade|sodium-independent organic anion transport|transmembrane transport|vasoconstriction|water transport	cytosol|soluble fraction	caspase inhibitor activity|neurohypophyseal hormone activity|protein kinase activity|signal transducer activity|V1A vasopressin receptor binding				0				COAD - Colon adenocarcinoma(99;0.00643)		CCTCTTGCCGCCCCTCGGGCA	0.647000													7	195	---	---	---	---	0	0	0.335167	0	0
Unknown	0	broad.mit.edu	37	21	9769119	9769119	+	RNA	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr21:9769119G>A	uc011abu.1	+	10		c.1094G>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		GCTCAATTCCGATCTGTTGAA	0.373000													4	19	---	---	---	---	0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	21	9769121	9769121	+	RNA	SNP	T	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr21:9769121T>A	uc011abu.1	+	10		c.1096T>A								Homo sapiens, clone IMAGE:4720764, mRNA.																		TCAATTCCGATCTGTTGAAGG	0.373000													4	19	---	---	---	---	0	0	0.150653	0	0
KRTAP12-3	386683	broad.mit.edu	37	21	46078031	46078031	+	Silent	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr21:46078031C>T	uc002zft.2	+	1	183	c.135C>T	c.(133-135)TGC>TGT	p.C45C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	45	6.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						GCATTGTGTGCGTGGCTCCCT	0.642000													6	267	---	---	---	---	0	0	0.248553	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													2	9	---	---	---	---	0	0	0.115264	0	0
MOV10L1	54456	broad.mit.edu	37	22	50582545	50582545	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr22:50582545A>G	uc003bjj.2	+	18	2461	c.2378A>G	c.(2377-2379)GAC>GGC	p.D793G	MOV10L1_uc003bjk.3_Missense_Mutation_p.D793G|MOV10L1_uc011arp.1_Missense_Mutation_p.D773G|MOV10L1_uc003bjl.2_5'Flank	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	793					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GCCTTGCCGGACAGTCGGATT	0.562000													78	158	---	---	---	---	0	0	0.870114	0	0
MAP4	4134	broad.mit.edu	37	3	47958222	47958222	+	Silent	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr3:47958222G>A	uc003csb.2	-	7	1621	c.1095C>T	c.(1093-1095)GCC>GCT	p.A365A	MAP4_uc003csc.3_Silent_p.A365A|MAP4_uc011bbf.1_Silent_p.A342A|MAP4_uc003csf.3_Silent_p.A382A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	365	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGGGCTAAGTCCA	0.478000													3	104	---	---	---	---	0	0	0.184627	0	0
MAP4	4134	broad.mit.edu	37	3	47958225	47958225	+	Silent	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr3:47958225T>C	uc003csb.2	-	7	1618	c.1092A>G	c.(1090-1092)TTA>TTG	p.L364L	MAP4_uc003csc.3_Silent_p.L364L|MAP4_uc011bbf.1_Silent_p.L341L|MAP4_uc003csf.3_Silent_p.L381L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	364	26 residues 1.|17 X 14 AA tandem repeats.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGGGCTAAGTCCATTT	0.478000													3	107	---	---	---	---	0	0	0.184627	0	0
OR5K1	26339	broad.mit.edu	37	3	98189173	98189173	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr3:98189173C>A	uc003dsm.2	+	1	753	c.753C>A	c.(751-753)TTC>TTA	p.F251L		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTTCATTATTCTATGGATCTC	0.343000													13	36	---	---	---	---	8.60227e-14	1.03227e-13	0.500413	1	0
CPOX	1371	broad.mit.edu	37	3	98304370	98304370	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr3:98304370G>T	uc003dsx.2	-	5	1180	c.1087C>A	c.(1087-1089)CCT>ACT	p.P363T		NM_000097	NP_000088	P36551	HEM6_HUMAN	coproporphyrinogen oxidase precursor	363						mitochondrial intermembrane space	coproporphyrinogen oxidase activity|protein homodimerization activity				0						ATGTAAGAAGGAACTACAGCC	0.507000													13	208	---	---	---	---	1.05317e-09	1.23902e-09	0.457914	1	0
RASGEF1B	153020	broad.mit.edu	37	4	82366917	82366917	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr4:82366917C>A	uc003hmi.1	-	7	949	c.805G>T	c.(805-807)GTT>TTT	p.V269F	RASGEF1B_uc003hmj.1_Missense_Mutation_p.V268F|RASGEF1B_uc010ijq.1_Missense_Mutation_p.V227F	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	269	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						TCTGTAGCAACCAAGTAGCTG	0.363000													4	44	---	---	---	---	3.59834e-05	4.07359e-05	0.217242	1	0
SYTL3	94120	broad.mit.edu	37	6	159184419	159184419	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr6:159184419C>G	uc003qrp.2	+	16	1845	c.1601C>G	c.(1600-1602)TCA>TGA	p.S534*	SYTL3_uc011efp.1_Nonsense_Mutation_p.S534*|SYTL3_uc003qro.2_Nonsense_Mutation_p.S466*|SYTL3_uc003qrq.2_Nonsense_Mutation_p.S466*|SYTL3_uc003qrr.2_Nonsense_Mutation_p.S534*|SYTL3_uc003qrs.2_Nonsense_Mutation_p.S466*|SYTL3_uc011efq.1_Nonsense_Mutation_p.S260*	NM_001009991	NP_001009991	Q4VX76	SYTL3_HUMAN	synaptotagmin-like 3	534	C2 2.				intracellular protein transport	endomembrane system|membrane	Rab GTPase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		TGGAAACACTCATTTGTCTTC	0.527000													35	65	---	---	---	---	0	0	0.834066	0	0
ACTB	60	broad.mit.edu	37	7	5568116	5568116	+	Missense_Mutation	SNP	A	C	C	rs36081609		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:5568116A>C	uc003sos.3	-	3	634	c.598T>G	c.(598-600)TTC>GTC	p.F200V	ACTB_uc003sor.3_Missense_Mutation_p.F78V|ACTB_uc003sot.3_Missense_Mutation_p.F200V|ACTB_uc003soq.3_Missense_Mutation_p.F78V|ACTB_uc010ksy.2_Missense_Mutation_p.F78V	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	200					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		GTGGTGGTGAAGCTGTAGCCG	0.622000													43	55	---	---	---	---	0	0	0.870114	0	0
HDAC9	9734	broad.mit.edu	37	7	18688246	18688246	+	Silent	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:18688246G>A	uc003suh.2	+	10	1439	c.1398G>A	c.(1396-1398)CAG>CAA	p.Q466Q	HDAC9_uc003sue.2_Silent_p.Q466Q|HDAC9_uc011jyd.1_Silent_p.Q466Q|HDAC9_uc003sui.2_Silent_p.Q469Q|HDAC9_uc003suj.2_Silent_p.Q425Q|HDAC9_uc011jya.1_Silent_p.Q463Q|HDAC9_uc003sua.1_Silent_p.Q444Q|HDAC9_uc011jyb.1_Silent_p.Q422Q|HDAC9_uc003sud.1_Silent_p.Q466Q|HDAC9_uc011jyc.1_Silent_p.Q425Q|HDAC9_uc003suf.1_Silent_p.Q497Q|HDAC9_uc010kud.1_Silent_p.Q469Q|HDAC9_uc011jye.1_Silent_p.Q438Q|HDAC9_uc011jyf.1_Silent_p.Q389Q|HDAC9_uc010kue.1_Silent_p.Q209Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	466					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TCATTCAACAGCAACACCAGC	0.507000													3	80	---	---	---	---	0	0	0.184627	0	0
SLC25A13	10165	broad.mit.edu	37	7	95822462	95822462	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:95822462C>T	uc003uof.3	-	6	693	c.502G>A	c.(502-504)GTG>ATG	p.V168M	SLC25A13_uc003uog.3_Missense_Mutation_p.V168M|SLC25A13_uc011kik.1_Missense_Mutation_p.V60M	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	168	EF-hand 4.				ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	TCCCGTTGCACAAAGGCTTGC	0.413000													37	55	---	---	---	---	0	0	0.870114	0	0
COL14A1	7373	broad.mit.edu	37	8	121238917	121238917	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr8:121238917G>A	uc003yox.2	+	16	2181	c.1916G>A	c.(1915-1917)AGT>AAT	p.S639N	COL14A1_uc003yoy.2_Missense_Mutation_p.S317N	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	639	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ACGACAGACAGTTTTAGGGTG	0.473000													3	57	---	---	---	---	0	0	0.115264	0	0
AQP7	364	broad.mit.edu	37	9	33385156	33385156	+	Silent	SNP	C	T	T	rs144994089	byFrequency	TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr9:33385156C>T	uc003zst.2	-	8	1048	c.876G>A	c.(874-876)GCG>GCA	p.A292A	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.V216I	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	292	Cytoplasmic (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		GGTCTTCATACGCCACAGAAT	0.552000													4	116	---	---	---	---	0	0	0.248553	0	0
LOC442421	442421	broad.mit.edu	37	9	66500841	66500841	+	RNA	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr9:66500841C>T	uc004aed.1	+	3		c.934C>T								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						CCACCTGGTGCCCAGGGCTCC	0.632000													6	59	---	---	---	---	0	0	0.539581	0	0
GTF3C5	9328	broad.mit.edu	37	9	135919216	135919216	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr9:135919216T>C	uc004cci.3	+	3	812	c.475T>C	c.(475-477)TTT>CTT	p.F159L	GTF3C5_uc010mzz.2_Missense_Mutation_p.F34L|GTF3C5_uc004ccj.3_Missense_Mutation_p.F159L	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	159						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		GAAGGAGGCCTTTTTCCACCA	0.592000													4	155	---	---	---	---	0	0	0.184627	0	0
EIF1AX	1964	broad.mit.edu	37	X	20156735	20156735	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:20156735C>T	uc004czt.2	-	2	230	c.22G>A	c.(22-24)GGA>AGA	p.G8R	SCARNA9L_uc010nfp.2_5'Flank	NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	8						cytosol	translation initiation factor activity			ovary(1)	1						TTTTTACCTCCTTTACCTGAT	0.308000													30	67	---	---	---	---	0	0	0.788014	0	0
ARX	170302	broad.mit.edu	37	X	25031220	25031220	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:25031220G>T	uc004dbp.3	-	2	1103	c.892C>A	c.(892-894)CAC>AAC	p.H298N		NM_139058	NP_620689	Q96QS3	ARX_HUMAN	aristaless related homeobox	298						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TCTTCCGGGTGCAGCAGCAGC	0.697000													6	12	---	---	---	---	3.09899e-07	3.57575e-07	0.307466	1	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													6	75	---	---	---	---	0	0	0.248553	0	0
SATL1	340562	broad.mit.edu	37	X	84363501	84363501	+	Silent	SNP	G	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:84363501G>A	uc011mqx.1	-	1	474	c.474C>T	c.(472-474)ACC>ACT	p.T158T	SATL1_uc004een.2_Silent_p.T158T	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	214	Gln-rich.						N-acetyltransferase activity			breast(2)	2						CTAATTGGCTGGTGCCTACTT	0.532000											OREG0019887	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	81	---	---	---	---	0	0	0.115264	0	0
CDR1	1038	broad.mit.edu	37	X	139866238	139866238	+	Silent	SNP	G	A	A	rs149313606	by1000genomes	TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:139866238G>A	uc004fbg.1	-	1	486	c.294C>T	c.(292-294)GAC>GAT	p.D98D	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	98	23 X 6 AA approximate repeats.|16.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CTTCCAGCAAGTCCACGTCTT	0.438000													3	119	---	---	---	---	0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	11	75288367	75288367	+	IGR	DEL	C	-	-	rs141619843		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr11:75288367delC								SERPINH1 (4523 upstream) : MAP6 (9597 downstream)																							AATTTAGAGGcccccccccgc	0.423													2	4	---	---	---	---					
GALNT4	8693	broad.mit.edu	37	12	89919631	89919632	+	5'Flank	DEL	CC	-	-	rs67346689		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr12:89919631_89919632delCC	uc001tbd.2	-						POC1B_uc001tba.2_5'Flank|POC1B_uc001tbb.2_5'Flank|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Intron|GALNT4_uc010suo.1_Intron	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4						carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						CAGGGAGGGACCCCCCCCACCT	0.668													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	97602215	97602217	+	IGR	DEL	CAC	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr14:97602215_97602217delCAC								VRK1 (254265 upstream) : C14orf64 (789730 downstream)																							ccaacatcatcaccaccaccacc	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	90839022	90839022	+	5'Flank	DEL	A	-	-	rs140149299		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr15:90839022delA	uc002bph.1	-											DQ578200																		TCAAGAAATTAAAAAAAAAAA	0.378													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33939019	33939019	+	IGR	DEL	C	-	-	rs113683091		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr16:33939019delC								None (None upstream) : MIR1826 (26489 downstream)																							GTTGCACAGGCCGCCTGCGTG	0.667													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	89670055	89670056	+	IGR	INS	-	A	A			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr16:89670055_89670056insA								CPNE7 (6402 upstream) : DPEP1 (9660 downstream)																							GGGCTGGAGGGGAGCCCTGGGG	0.757													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	80667266	80667266	+	IGR	DEL	T	-	-	rs36077320		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr17:80667266delT								RAB40B (10668 upstream) : FN3KRP (7316 downstream)																							gcccaccccctgctccacctg	0.000													4	5	---	---	---	---					
ZNF784	147808	broad.mit.edu	37	19	56133524	56133526	+	In_Frame_Del	DEL	CCG	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr19:56133524_56133526delCCG	uc002qll.1	-	2	577_579	c.563_565delCGG	c.(562-567)GCGGGC>GGC	p.A188del	ZNF784_uc010etb.1_RNA	NM_203374	NP_976308	Q8NCA9	ZN784_HUMAN	zinc finger protein 784	188					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.105)		accgctgcgcccgccgccgccgc	0.488													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	238506758	238506759	+	IGR	INS	-	C	C			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr2:238506758_238506759insC								RAB17 (7022 upstream) : LRRFIP1 (29465 downstream)																							cggtcccctctccgtcctccac	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	242820230	242820231	+	IGR	DEL	CT	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr2:242820230_242820231delCT								C2orf85 (4748 upstream) : LOC728323 (210613 downstream)																							caccccttccctctctcctcgc	0.134													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	1857848	1857862	+	IGR	DEL	TCCATCCCCCCTGTA	-	-	rs140496777	by1000genomes	TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr20:1857848_1857862delTCCATCCCCCCTGTA								SIRPG (219423 upstream) : SIRPA (16951 downstream)																							CATCCCCGTGTCCATCCCCCCTGTATCCATCCCCC	0.498													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	28516210	28516211	+	IGR	DEL	GC	-	-	rs148404345		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr21:28516210_28516211delGC								ADAMTS5 (176771 upstream) : NCRNA00113 (578487 downstream)																							CGGCCAGCGGGCGCGCGCGGAA	0.693													2	4	---	---	---	---					
MIR658	724028	broad.mit.edu	37	22	38240354	38240357	+	RNA	DEL	GGGC	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr22:38240354_38240357delGGGC	hsa-mir-658|MI0003682	-			c.22_25delGGGC			ANKRD54_uc003auc.2_5'Flank|ANKRD54_uc003aud.2_5'Flank																	0						CGGGCGGGCAGGGCCCGCAACCAC	0.686													8	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	560571	560572	+	IGR	INS	-	G	G			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr4:560571_560572insG								PIGG (27252 upstream) : PDE6B (58791 downstream)																							ctgcatcccacccctgcatccc	0.099													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	1516348	1516349	+	IGR	INS	-	TGG	TGG			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr4:1516348_1516349insTGG								CRIPAK (126566 upstream) : FAM53A (125260 downstream)																							ggtggtggtgatggtggtgatg	0.000													6	10	---	---	---	---					
PCDH10	57575	broad.mit.edu	37	4	134071649	134071649	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr4:134071649delC	uc003iha.2	+	1	1180	c.354delC	c.(352-354)AACfs	p.N118fs	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Frame_Shift_Del_p.N118fs	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	118	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TTAATGACAACCCCCCCTCTT	0.607													7	307	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	7372649	7372650	+	IGR	INS	-	CCT	CCT			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr5:7372649_7372650insCCT								PAPD7 (615488 upstream) : ADCY2 (23693 downstream)																							ctccaccatcaccaccaccacc	0.000													4	4	---	---	---	---					
UFSP1	402682	broad.mit.edu	37	7	100487346	100487350	+	5'Flank	DEL	CGCCC	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:100487346_100487350delCGCCC	uc003uxc.3	-						uc010lhm.1_5'Flank	NM_001015072	NP_001015072	Q6NVU6	UFSP1_HUMAN	inactive Ufm1-specific protease 1												0	Lung NSC(181;0.041)|all_lung(186;0.0581)					TGCTCCGCCGCGccccgccccgccc	0.498													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101386968	101386970	+	IGR	DEL	CCT	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:101386968_101386970delCCT								MYL10 (114392 upstream) : CUX1 (72322 downstream)																							GCCGCCGCCGcctcctcctcctc	0.493													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	106022711	106022713	+	IGR	DEL	GGA	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr7:106022711_106022713delGGA								NAMPT (97073 upstream) : FLJ36031 (276437 downstream)																							CCCAGGCCTGggaggaggaggag	0.276													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	140579924	140579925	+	IGR	INS	-	G	G	rs5895608		TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr8:140579924_140579925insG								COL22A1 (653688 upstream) : KCNK9 (33157 downstream)																							ATCCCCACCCCCCCATCCCCAC	0.485													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	143684137	143684137	+	IGR	DEL	G	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chr8:143684137delG								BAI1 (57770 upstream) : ARC (8273 downstream)																							TGGGGGACCAGGGGAACCCAC	0.498													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	139631844	139631845	+	IGR	DEL	AC	-	-			TCGA-EM-A3FN-01A-11D-A21A-08	TCGA-EM-A3FN-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d25bba0-29fc-4fe2-b891-d71fb3554dd3	03ff508f-ed60-4df8-9d9a-ca834a8b4073	g.chrX:139631844_139631845delAC								SOX3 (44619 upstream) : RP1-177G6.2 (160087 downstream)																							TCCCTGAAATacacacacacac	0.391													3	3	---	---	---	---					
