Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ADC	113451	broad.mit.edu	37	1	33560160	33560160	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:33560160G>C	uc001bwr.2	+	8	1186	c.599G>C	c.(598-600)GGC>GCC	p.G200A	ADC_uc001bws.2_Missense_Mutation_p.G200A|ADC_uc009vue.2_Missense_Mutation_p.G200A|ADC_uc001bwt.1_Missense_Mutation_p.G105A|ADC_uc001bwu.2_Missense_Mutation_p.G105A|ADC_uc001bwv.2_Missense_Mutation_p.G105A|ADC_uc001bww.2_Missense_Mutation_p.G105A|ADC_uc001bwx.1_Missense_Mutation_p.G177A|ADC_uc001bwz.1_Missense_Mutation_p.G200A|ADC_uc009vuf.1_Intron|ADC_uc001bwy.1_Missense_Mutation_p.G49A|ADC_uc009vug.2_Missense_Mutation_p.G200A	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	200					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	TTTCACATTGGCAGTGGCTGT	0.587000													24	90					0	0	0.003330	0	0
COL24A1	255631	broad.mit.edu	37	1	86590808	86590808	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:86590808G>T	uc001dlj.2	-	3	1253	c.1211C>A	c.(1210-1212)ACA>AAA	p.T404K	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.T404K	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	404					cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		ATTAGTAATTGTATCTTGTTT	0.348000													14	61					2.62699e-14	3.40314e-14	0.003163	1	0
FCGR1A	2209	broad.mit.edu	37	1	149755784	149755784	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:149755784G>A	uc001esp.3	+	3	328	c.278G>A	c.(277-279)AGT>AAT	p.S93N	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	93	Extracellular (Potential).|Ig-like C2-type 1.				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCAGGGCGAAGTGACCCCATA	0.547000													30	105					0	0	0.004289	0	0
LY9	4063	broad.mit.edu	37	1	160783602	160783602	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:160783602C>T	uc001fwu.2	+	3	681	c.631C>T	c.(631-633)CGA>TGA	p.R211*	LY9_uc010pjs.1_Nonsense_Mutation_p.R211*|LY9_uc001fwv.2_Nonsense_Mutation_p.R211*|LY9_uc001fww.2_Nonsense_Mutation_p.R211*|LY9_uc001fwx.2_Nonsense_Mutation_p.R211*|LY9_uc001fwy.1_Nonsense_Mutation_p.R113*|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	211	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TACCGTCTCCCGAACACCATG	0.572000													65	266					0	0	0.003610	0	0
C1orf65	164127	broad.mit.edu	37	1	223568185	223568185	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:223568185C>A	uc001hoa.2	+	1	1471	c.1368C>A	c.(1366-1368)TTC>TTA	p.F456L		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	456	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		AACAAAGTTTCCAGCGGTCCC	0.607000													15	55					4.7546e-09	5.76622e-09	0.004007	1	0
PPIF	10105	broad.mit.edu	37	10	81113478	81113478	+	Silent	SNP	T	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr10:81113478T>C	uc001kai.2	+	6	589	c.504T>C	c.(502-504)CAT>CAC	p.H168H	PPIF_uc001kaj.2_Missense_Mutation_p.M143T	NM_005729	NP_005720	P30405	PPIF_HUMAN	peptidylprolyl isomerase F precursor	168	PPIase cyclophilin-type.				protein folding	membrane fraction|mitochondrial matrix	peptidyl-prolyl cis-trans isomerase activity			skin(1)	1	all_cancers(46;0.0893)|Breast(12;8.52e-05)|all_epithelial(25;0.00449)|Prostate(51;0.00985)		Epithelial(14;0.00242)|all cancers(16;0.0069)|Colorectal(32;0.229)		Dimethyl sulfoxide(DB01093)|L-Proline(DB00172)	ATGGCAAGCATGTTGTGTTCG	0.502000													37	132					0	0	0.002852	0	0
CTR9	9646	broad.mit.edu	37	11	10783517	10783517	+	Silent	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr11:10783517C>T	uc001mja.2	+	7	914	c.765C>T	c.(763-765)GTC>GTT	p.V255V		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	255	TPR 5.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		AAAATGGTGTCCAGCTTCTTT	0.343000													10	55					0	0	0.000978	0	0
LOC284232	284232	broad.mit.edu	37	13	19415641	19415641	+	RNA	SNP	A	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr13:19415641A>T	uc010tcj.1	-	1		c.30469T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaaaaaaaaaaacccaaaca	0.169000													4	61					0	0	0.000602	0	0
LOC284232	284232	broad.mit.edu	37	13	19415742	19415742	+	RNA	SNP	T	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr13:19415742T>C	uc010tcj.1	-	1		c.30368A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCTGTTTTCCTAATCTTTCTT	0.313000													4	100					0	0	0.000602	0	0
C13orf34	79866	broad.mit.edu	37	13	73303185	73303185	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr13:73303185A>C	uc001viv.1	+	2	226	c.107A>C	c.(106-108)GAA>GCA	p.E36A	C13orf37_uc001viu.2_5'Flank|C13orf34_uc010thq.1_5'UTR|C13orf34_uc010aen.1_Missense_Mutation_p.E111A|C13orf34_uc010thr.1_Missense_Mutation_p.N2H|C13orf34_uc001viw.1_Missense_Mutation_p.E36A	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	36					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		AATCTCCATGAACAAACTCTC	0.328000													61	264					0	0	0.003610	0	0
PYGL	5836	broad.mit.edu	37	14	51378916	51378916	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr14:51378916G>A	uc001wyu.2	-	14	1853	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	PYGL_uc010tqq.1_Nonsense_Mutation_p.R542*|PYGL_uc001wyv.2_Nonsense_Mutation_p.R250*	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	576					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	AAGAGCTGTCGCTTGTACTCA	0.493000													6	238					0	0	0.001168	0	0
SYNJ2BP	55333	broad.mit.edu	37	14	70842422	70842422	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr14:70842422A>G	uc001xmc.3	-	3	395	c.268T>C	c.(268-270)TAT>CAT	p.Y90H	SYNJ2BP_uc010arc.2_RNA	NM_018373	NP_060843	P57105	SYJ2B_HUMAN	synaptojanin 2 binding protein	90	PDZ.|Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane					0				all cancers(60;0.00367)|BRCA - Breast invasive adenocarcinoma(234;0.00716)|OV - Ovarian serous cystadenocarcinoma(108;0.0377)		GACACAGCATAGCCTGCATTA	0.473000													6	195					0	0	0.001984	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413659	105413659	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr14:105413659C>T	uc010axc.1	-	7	8249	c.8129G>A	c.(8128-8130)GGC>GAC	p.G2710D	AHNAK2_uc001ypx.2_Missense_Mutation_p.G2610D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2710						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATCCACCTGGCCAGCCTGGAC	0.607000													88	234					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106866707	106866707	+	RNA	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr14:106866707C>T	uc010tyt.1	-	281		c.11524G>A								Parts of antibodies, mostly variable regions.												0						ACACTGGACACCTGCAAACAC	0.537000													4	220					0	0	0.000248	0	0
GPR176	11245	broad.mit.edu	37	15	40093791	40093791	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr15:40093791G>A	uc001zkj.1	-	3	1956	c.1090C>T	c.(1090-1092)CGC>TGC	p.R364C	GPR176_uc010uck.1_Missense_Mutation_p.R304C	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	364	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		CTACCCGAGCGTATGCTGGGT	0.567000													4	164					0	0	0.000248	0	0
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	A	A	rs121913343		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr17:7577121G>A	uc002gim.2	-	8	1011	c.817C>T	c.(817-819)CGT>TGT	p.R273C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141C|TP53_uc010cng.1_Missense_Mutation_p.R141C|TP53_uc002gii.1_Missense_Mutation_p.R141C|TP53_uc010cnh.1_Missense_Mutation_p.R273C|TP53_uc010cni.1_Missense_Mutation_p.R273C|TP53_uc002gij.2_Missense_Mutation_p.R273C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542000	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	19					0	0	0.004007	0	0
KIAA0802	23255	broad.mit.edu	37	18	8825636	8825636	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr18:8825636G>T	uc002knr.2	+	15	4270	c.4128G>T	c.(4126-4128)AAG>AAT	p.K1376N	KIAA0802_uc002knq.2_Missense_Mutation_p.K1335N|KIAA0802_uc002kns.2_Missense_Mutation_p.K716N	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1686											0						CCATCGAGAAGGTGCAGGCCA	0.602000													8	25					0.000274275	0.000325702	0.004482	1	0
SERPINB12	89777	broad.mit.edu	37	18	61225658	61225658	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr18:61225658A>T	uc010xen.1	+	2	242	c.242A>T	c.(241-243)AAA>ATA	p.K81I	SERPINB12_uc010xeo.1_Missense_Mutation_p.K81I	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	81					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AACAAACAAAAAGTGCTGGCT	0.463000													23	76					0	0	0.004656	0	0
KIAA1310	55683	broad.mit.edu	37	2	97267954	97267954	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr2:97267954C>T	uc002swn.3	-	19	2527	c.2381G>A	c.(2380-2382)GGT>GAT	p.G794D	KIAA1310_uc002swh.3_Missense_Mutation_p.G680D|KIAA1310_uc002swi.3_Missense_Mutation_p.G721D|KIAA1310_uc002swj.3_Intron|KIAA1310_uc002swk.3_Missense_Mutation_p.G707D|KIAA1310_uc010fhz.2_Missense_Mutation_p.G614D|KIAA1310_uc002swl.3_Missense_Mutation_p.G693D|KIAA1310_uc002swm.3_Intron|KIAA1310_uc010yur.1_Missense_Mutation_p.G588D|KIAA1310_uc002swo.2_Missense_Mutation_p.G142D	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	820											0						GGGCTTCCCACCAGGAGTGGC	0.617000													8	17					0	0	0.003080	0	0
RGPD3	653489	broad.mit.edu	37	2	107049470	107049470	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr2:107049470G>A	uc010ywi.1	-	17	2447	c.2390C>T	c.(2389-2391)TCT>TTT	p.S797F		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	797					intracellular transport		binding			ovary(1)	1						TGTTTTGGGAGAATACTAAAA	0.313000													6	137					0	0	0.003080	0	0
FASTKD1	79675	broad.mit.edu	37	2	170428527	170428527	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr2:170428527G>C	uc002uev.3	-	2	401	c.13C>G	c.(13-15)CCT>GCT	p.P5A	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_5'UTR|FASTKD1_uc002uey.2_5'UTR	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	5					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						AGGAAAACAGGTGTTTTTTTC	0.373000													10	41					0	0	0.006214	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								25	71					0	0	0.004656	0	0
FYCO1	79443	broad.mit.edu	37	3	46009639	46009639	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr3:46009639G>A	uc003cpb.3	-	8	1393	c.1187C>T	c.(1186-1188)GCG>GTG	p.A396V	FYCO1_uc011bal.1_Missense_Mutation_p.A396V	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	396	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CTCCTGGGCCGCATCACTGGG	0.567000													5	390					0	0	0.000602	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567000													8	29					0	0	0.001523	0	0
IGSF10	285313	broad.mit.edu	37	3	151163027	151163027	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr3:151163027G>T	uc011bod.1	-	4	4742	c.4742C>A	c.(4741-4743)TCA>TAA	p.S1581*		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1581					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGCAATTTCTGAGTATGGTTT	0.438000													22	187					2.37509e-13	3.00845e-13	0.001523	1	0
NLGN1	22871	broad.mit.edu	37	3	173997002	173997002	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr3:173997002A>T	uc003fio.1	+	6	1634	c.1211A>T	c.(1210-1212)GAT>GTT	p.D404V	NLGN1_uc010hww.1_Missense_Mutation_p.D444V|NLGN1_uc003fip.1_Missense_Mutation_p.D404V	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	421	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			GATAGCGATGATGGTATATCA	0.328000													4	115					0	0	0.000602	0	0
SLC4A4	8671	broad.mit.edu	37	4	72121038	72121038	+	Silent	SNP	A	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr4:72121038A>C	uc003hfy.2	+	3	292	c.175A>C	c.(175-177)AGA>CGA	p.R59R	SLC4A4_uc010iic.2_Silent_p.R59R|SLC4A4_uc010iib.2_Silent_p.R59R|SLC4A4_uc003hfz.2_Silent_p.R59R|SLC4A4_uc003hga.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	59	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GGAAAAGGAGAGAATCTCTGA	0.448000													7	130					0	0	0.001984	0	0
CDH12	1010	broad.mit.edu	37	5	21752212	21752212	+	Silent	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr5:21752212G>A	uc010iuc.2	-	12	2477	c.2019C>T	c.(2017-2019)TTC>TTT	p.F673F	CDH12_uc011cno.1_Silent_p.F633F|CDH12_uc003jgk.2_Silent_p.F673F|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	673	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CCCCGATGTCGAAAGCCTGGG	0.463000										HNSCC(59;0.17)			14	83					0	0	0.003163	0	0
PLCXD3	345557	broad.mit.edu	37	5	41381990	41381990	+	Silent	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr5:41381990G>T	uc003jmm.1	-	2	852	c.750C>A	c.(748-750)ACC>ACA	p.T250T		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	250					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TAGCTTTGGGGGTCAGCACCA	0.428000													38	130					5.44703e-19	7.22048e-19	0.002222	1	0
WWC1	23286	broad.mit.edu	37	5	167858267	167858267	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr5:167858267G>A	uc003lzu.2	+	15	2191	c.2098G>A	c.(2098-2100)GTG>ATG	p.V700M	WWC1_uc003lzv.2_Missense_Mutation_p.V700M|WWC1_uc011den.1_Missense_Mutation_p.V700M|WWC1_uc003lzw.2_Missense_Mutation_p.V499M|WWC1_uc010jjf.1_Translation_Start_Site	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	700	C2.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GAATATCCGCGTGGCTGTCCT	0.532000													7	125					0	0	0.001984	0	0
BTNL8	79908	broad.mit.edu	37	5	180338425	180338425	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr5:180338425C>T	uc003mmp.2	+	3	718	c.484C>T	c.(484-486)CGG>TGG	p.R162W	BTNL8_uc003mmq.2_Missense_Mutation_p.R162W|BTNL8_uc011dhg.1_Missense_Mutation_p.R37W|BTNL8_uc010jll.2_Missense_Mutation_p.R162W|BTNL8_uc010jlm.2_Missense_Mutation_p.R46W|BTNL8_uc011dhh.1_5'UTR	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	162	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGTTCCCCCGGCCCACAGC	0.527000													80	358					0	0	0.003610	0	0
HIST1H1C	3006	broad.mit.edu	37	6	26056346	26056346	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr6:26056346G>A	uc003nfw.2	-	1	354	c.311C>T	c.(310-312)TCC>TTC	p.S104F		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	104	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						GAGTTTAAAGGAGCCAGAAGC	0.527000													46	164					0	0	0.003610	0	0
SDK1	221935	broad.mit.edu	37	7	4259754	4259754	+	Silent	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr7:4259754G>T	uc003smx.2	+	39	5692	c.5553G>T	c.(5551-5553)GTG>GTT	p.V1851V	SDK1_uc010kso.2_Silent_p.V1107V|SDK1_uc003smy.2_Silent_p.V338V	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1851	Fibronectin type-III 12.				cell adhesion	integral to membrane		p.V1851V(1)		large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGAGCAAGGTGGTGACCGTGG	0.567000													22	114					5.26018e-13	6.51805e-13	0.001882	1	0
RADIL	55698	broad.mit.edu	37	7	4855893	4855893	+	Silent	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr7:4855893G>A	uc003snj.1	-	8	2105	c.1932C>T	c.(1930-1932)TCC>TCT	p.S644S	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Silent_p.S149S|RADIL_uc011jwc.1_Silent_p.S404S|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	644	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		GCAGTGTCCCGGAGAAGAAGA	0.657000													16	49					0	0	0.006122	0	0
CNGB3	54714	broad.mit.edu	37	8	87683282	87683282	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr8:87683282G>A	uc003ydx.2	-	4	429	c.383C>T	c.(382-384)GCC>GTC	p.A128V	CNGB3_uc010maj.2_5'UTR	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	128	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						CTGGGCATCGGCATACTCATT	0.453000													6	443					0	0	0.001984	0	0
GLIS3	169792	broad.mit.edu	37	9	3828287	3828287	+	Silent	SNP	G	C	C			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr9:3828287G>C	uc003zhw.1	-	10	2507	c.2313C>G	c.(2311-2313)GTC>GTG	p.V771V	GLIS3_uc003zhx.1_Silent_p.V926V|GLIS3_uc010mhf.1_Silent_p.V320V|GLIS3_uc003zhv.1_RNA	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	771					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CTTCGGTGTAGACAGAGGAGA	0.562000													11	29					0	0	0.000978	0	0
MXRA5	25878	broad.mit.edu	37	X	3240116	3240116	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chrX:3240116C>T	uc004crg.3	-	5	3767	c.3610G>A	c.(3610-3612)GCT>ACT	p.A1204T		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1204						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCACCCAAGCTGTAGGAACC	0.458000													5	182					0	0	0.000602	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64719804	64719804	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chrX:64719804G>T	uc010nko.2	+	4	1001	c.992G>T	c.(991-993)AGC>ATC	p.S331I		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	331							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						CACGGCCCAAGCCTTGAAAAT	0.443000													59	261					1.42676e-28	1.93632e-28	0.003610	1	0
COL4A5	1287	broad.mit.edu	37	X	107840717	107840717	+	Silent	SNP	T	C	C	rs143442986		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chrX:107840717T>C	uc004enz.1	+	24	1900	c.1698T>C	c.(1696-1698)CCT>CCC	p.P566P	COL4A5_uc011mso.1_Silent_p.P566P|COL4A5_uc004eob.1_Silent_p.P174P	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	566	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TGGGTTCCCCTGGAGCTCCAG	0.537000									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	96					0	0	0.001984	0	0
SAGE1	55511	broad.mit.edu	37	X	134988650	134988650	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chrX:134988650C>T	uc004ezh.2	+	7	843	c.676C>T	c.(676-678)CGA>TGA	p.R226*	SAGE1_uc010nry.1_Nonsense_Mutation_p.R195*|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	226										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTTGACTCTTCGACCACGGCG	0.428000													11	287					0	0	0.000978	0	0
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	AGCT	AGCT	rs141324796	by1000genomes	TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663													7	15	---	---	---	---					
GAS5	60674	broad.mit.edu	37	1	173836247	173836248	+	RNA	INS	-	A	A	rs145452199	by1000genomes	TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr1:173836247_173836248insA	uc001gji.2	-	1		c.1_2insT			GAS5_uc001gjj.2_Intron|GAS5_uc001gjk.2_Intron|SNORD81_uc009wwi.1_5'Flank|SNORD47_uc001gjl.2_5'Flank|SNORD80_uc009wwj.1_5'Flank|SNORD79_uc009wwk.1_5'Flank|SNORD78_uc009wwl.2_5'Flank|SNORD44_uc001gjn.1_5'Flank|SNORD77_uc009wwm.1_5'Flank|SNORD76_uc009wwn.1_5'Flank|SNORD75_uc009wwo.1_5'Flank|ZBTB37_uc001gjp.1_5'Flank|ZBTB37_uc001gjq.3_5'Flank|ZBTB37_uc009wwp.1_5'Flank|ZBTB37_uc001gjr.2_5'Flank					Homo sapiens mRNA; cDNA DKFZp564D0164 (from clone DKFZp564D0164).												0						GAGTGTTCTTTAAAAAAACGGT	0.381													5	2	---	---	---	---					
NOX4	50507	broad.mit.edu	37	11	89106662	89106663	+	Splice_Site	INS	-	A	A	rs56022003		TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr11:89106662_89106663insA	uc001pct.2	-	12	1314	c.1075_splice	c.e12-1	p.C359_splice	NOX4_uc009yvr.2_Splice_Site_p.C334_splice|NOX4_uc001pcu.2_Splice_Site_p.C285_splice|NOX4_uc001pcw.2_Splice_Site_p.C52_splice|NOX4_uc001pcx.2_Splice_Site_p.C52_splice|NOX4_uc001pcv.2_Splice_Site_p.C359_splice|NOX4_uc009yvo.2_Splice_Site|NOX4_uc010rtu.1_Splice_Site_p.C193_splice|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Splice_Site_p.C335_splice|NOX4_uc009yvq.2_Splice_Site_p.C335_splice	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a						cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGTTGGACACTAAAAAAAAATA	0.292													9	206	---	---	---	---					
C17orf82	388407	broad.mit.edu	37	17	59489871	59489877	+	Frame_Shift_Del	DEL	GGCCTCG	-	-			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr17:59489871_59489877delGGCCTCG	uc002izh.1	+	1	760_766	c.535_541delGGCCTCG	c.(535-543)GGCCTCGGGfs	p.G179fs		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	179_181											0						AGCCCGCCCAGGCCTCGGGCCTCGGCA	0.734													4	4	---	---	---	---					
ERBB2IP	55914	broad.mit.edu	37	5	65349867	65349867	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chr5:65349867delA	uc003juk.1	+	21	3029	c.2721delA	c.(2719-2721)GGAfs	p.G907fs	ERBB2IP_uc003jui.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc003juj.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqx.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqy.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Frame_Shift_Del_p.G903fs|ERBB2IP_uc003jul.1_Frame_Shift_Del_p.G903fs	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	907					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		CTGTTGATGGAAAAAATATAG	0.378													7	2069	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76939056	76939060	+	Frame_Shift_Del	DEL	ATTTA	-	-			TCGA-DU-5851-01A-13D-1893-08	TCGA-DU-5851-10A-01D-1893-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c01a846-2703-42fc-86d0-4bf042d39576	3a33d274-022d-4113-bbe9-559ebc898229	g.chrX:76939056_76939060delATTTA	uc004ecp.3	-	9	1920_1924	c.1688_1692delTAAAT	c.(1687-1692)TTAAATfs	p.L563fs	ATRX_uc004ecq.3_Frame_Shift_Del_p.L525fs|ATRX_uc004eco.3_Frame_Shift_Del_p.L348fs|ATRX_uc004ecr.2_Frame_Shift_Del_p.L524fs|ATRX_uc010nlx.1_Frame_Shift_Del_p.L563fs|ATRX_uc010nly.1_Frame_Shift_Del_p.L508fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	563_564					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTGAAGAAATATTTAATTTTACAGA	0.351			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						75	356	---	---	---	---					
