Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418													3	13					0	0	1	0	0
ZMYM6	9204	broad.mit.edu	37	1	35496240	35496240	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:35496240T>C	uc001byh.2	-	2	229	c.1A>G	c.(1-3)ATG>GTG	p.M1V	ZMYM6_uc001byf.1_Missense_Mutation_p.M1V|ZMYM6_uc010oht.1_Intron|ZMYM6_uc009vup.2_Intron|ZMYM6_uc009vuq.1_Missense_Mutation_p.M1V|ZMYM6_uc009vur.1_5'UTR|ZMYM6_uc001byj.2_Missense_Mutation_p.M1V|ZMYM6_uc001byi.2_Missense_Mutation_p.M1V|ZMYM6_uc001byk.2_Missense_Mutation_p.M1V	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	1					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GGTTCTTTCATTCTAATTTTT	0.388													39	6					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527													4	36					0	0	1	0	0
SH2D2A	9047	broad.mit.edu	37	1	156785835	156785835	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:156785835A>G	uc001fqd.2	-	2	226	c.86T>C	c.(85-87)ATG>ACG	p.M29T	SH2D2A_uc001fqc.1_Missense_Mutation_p.M1T|SH2D2A_uc009wsh.2_Missense_Mutation_p.M29T|SH2D2A_uc001fqe.2_Missense_Mutation_p.M11T|SH2D2A_uc010phs.1_Missense_Mutation_p.M29T|NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	29					angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTGCGGGTCATGTCTGTGAT	0.612													13	8					0	0	1	0	0
C1orf106	55765	broad.mit.edu	37	1	200880752	200880752	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:200880752C>T	uc001gvo.2	+	9	1416	c.1386C>T	c.(1384-1386)TCC>TCT	p.S462S	C1orf106_uc010ppm.1_Silent_p.S377S	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	462										skin(2)|ovary(1)	3						CTGACGTCTCCAGCATCTCCC	0.667													49	72					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232626742	232626742	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:232626742G>A	uc001hvg.2	-	3	1842	c.1684C>T	c.(1684-1686)CGA>TGA	p.R562*		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	562					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GGTAGTCCTCGTGCGGTACCA	0.458													10	39					0	0	1	0	0
OR1C1	26188	broad.mit.edu	37	1	247921335	247921335	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr1:247921335G>A	uc010pza.1	-	1	374	c.374C>T	c.(373-375)GCG>GTG	p.A125V		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GTGGCAAATCGCCACATATCT	0.502													25	19					0	0	1	0	0
AIFM2	84883	broad.mit.edu	37	10	71880314	71880314	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr10:71880314C>T	uc010qjg.1	-	4	469	c.456G>A	c.(454-456)TCG>TCA	p.S152S	AIFM2_uc001jqp.1_Silent_p.S152S	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	152					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						CCACTCCAGCCGAGCCTCCTC	0.522													39	73					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603654	5603654	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr12:5603654C>T	uc001qnl.3	+	1	357	c.274C>T	c.(274-276)CTG>TTG	p.L92L	NTF3_uc001qnk.3_Silent_p.L105L	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	92					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						GGACACCGAACTGCTGCGACA	0.632													29	31					0	0	1	0	0
PA2G4	5036	broad.mit.edu	37	12	56504240	56504240	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr12:56504240C>T	uc001sjm.2	+	8	1106	c.687C>T	c.(685-687)CTC>CTT	p.L229L	PA2G4_uc009zol.2_Silent_p.L229L|PA2G4_uc009zom.2_Silent_p.L229L	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	229					cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			TGGATGTTCTCGTCAGCTCAG	0.393													28	34					0	0	1	0	0
MIR616	693201	broad.mit.edu	37	12	57912987	57912987	+	RNA	SNP	T	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr12:57912987T>A	hsa-mir-616|MI0003629	-			c.56T>A			DDIT3_uc001soi.2_Intron|DDIT3_uc009zps.2_Intron|DDIT3_uc009zpt.2_Intron																	0						ctccaatgacttcctatttca	0													24	23					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	A	A	rs12366766		TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr12:132547087G>A	uc001ujn.2	+	46	8210	c.8175G>A	c.(8173-8175)CAG>CAA	p.Q2725Q	EP400_uc001ujl.2_Silent_p.Q2724Q|EP400_uc001ujm.2_Silent_p.Q2644Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.289													4	33					0	0	1	0	0
FGF14	2259	broad.mit.edu	37	13	103053948	103053948	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr13:103053948C>T	uc001vpf.2	-	1	177	c.81G>A	c.(79-81)AGG>AGA	p.R27R		NM_175929	NP_787125	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1B	Error:Variant_position_missing_in_Q92915_after_alignment					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCTTAGACACCCTGAGAAAGA	0.413													22	53					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20666311	20666311	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr14:20666311A>T	uc010tlb.1	+	1	817	c.817A>T	c.(817-819)AGA>TGA	p.R273*		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	273	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		AGCTGGGAGAAGAAAGGCTTT	0.468													10	149					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23855703	23855703	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr14:23855703G>A	uc001wjv.2	-	33	4847	c.4780C>T	c.(4780-4782)CGG>TGG	p.R1594W		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1594	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCCACCACCCGCTGGTGGTTG	0.592													50	107					0	0	1	0	0
SEC23A	10484	broad.mit.edu	37	14	39502455	39502455	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr14:39502455G>A	uc001wup.1	-	20	2509	c.2286C>T	c.(2284-2286)TCC>TCT	p.S762S	SEC23A_uc010tqa.1_Silent_p.S648S|SEC23A_uc010tqb.1_Silent_p.S733S	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	762					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		AAGCAGCACTGGACACAGCAA	0.328													4	76					0	0	1	0	0
PTPN21	11099	broad.mit.edu	37	14	88938593	88938593	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr14:88938593T>C	uc001xwv.3	-	15	3197	c.2866A>G	c.(2866-2868)ATT>GTT	p.I956V	PTPN21_uc010twc.1_Missense_Mutation_p.I752V	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	956	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						CTCACCTTAATATGTGATGCG	0.373													21	19					0	0	1	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104220415	104220415	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr14:104220415C>T	uc001yof.1	-	6	906	c.623G>A	c.(622-624)GGC>GAC	p.G208D	PPP1R13B_uc001yog.1_Missense_Mutation_p.G75D	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	208	Gln-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				ACACAGATTGCCGTTCATGAT	0.363													4	162					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72122614	72122614	+	Silent	SNP	T	C	C			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr15:72122614T>C	uc002atl.3	-	40	7349	c.6876A>G	c.(6874-6876)CCA>CCG	p.P2292P	MYO9A_uc002atj.2_Silent_p.P223P|MYO9A_uc002atk.2_Silent_p.P1087P	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2292	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CAGGAGACGATGGACCTGGAT	0.468													42	32					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101555560	101555560	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr15:101555560T>G	uc002bwr.2	+	12	1881	c.1562T>G	c.(1561-1563)ATT>AGT	p.I521S	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	521					small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ACGAAGCGTATTGCCTTTTTC	0.517											OREG0023522	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	10					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2161835	2161835	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr16:2161835G>A	uc002cos.1	-	15	3542	c.3333C>T	c.(3331-3333)TTC>TTT	p.F1111F	PKD1_uc002cot.1_Silent_p.F1111F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1111	PKD 5.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TCAGGTTCTCGAAGGCATTAG	0.706													4	14					0	0	1	0	0
FOXF1	2294	broad.mit.edu	37	16	86546529	86546529	+	Splice_Site	SNP	A	G	G			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr16:86546529A>G	uc002fjl.2	+	2	1023	c.980_splice	c.e2-2	p.G327_splice		NM_001451	NP_001442	Q12946	FOXF1_HUMAN	forkhead box F1						branching involved in open tracheal system development|cardiac left ventricle morphogenesis|embryonic ectodermal digestive tract morphogenesis|endocardial cushion development|in utero embryonic development|lung vasculature development|midgut development|pancreas development|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|ureter development|venous blood vessel development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0						CTCGCCTTGCAGGCATCCCGC	0.627													3	26					0	0	1	0	0
AMAC1L3	643664	broad.mit.edu	37	17	7385399	7385399	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr17:7385399G>A	uc010cmj.1	+	2	211	c.96G>A	c.(94-96)CAG>CAA	p.Q32Q	ZBTB4_uc002ghc.3_5'Flank|ZBTB4_uc002ghd.3_Intron|POLR2A_uc002ghe.2_5'Flank|POLR2A_uc002ghf.3_5'Flank	NM_001102614	NP_001096084	P0C7Q6	AMCL3_HUMAN	acyl-malonyl condensing enzyme 1-like 3	32						integral to membrane					0		Prostate(122;0.173)				AGTGCTGCCAGCCCTCTGATG	0.662													26	40					0	0	1	0	0
SCPEP1	59342	broad.mit.edu	37	17	55072877	55072877	+	Missense_Mutation	SNP	G	A	A	rs138036655		TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr17:55072877G>A	uc002iuv.3	+	8	720	c.667G>A	c.(667-669)GAA>AAA	p.E223K	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Missense_Mutation_p.E173K	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	223					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					GTCTCTTCTCGAAGACAAAGG	0.502													5	55					0	0	1	0	0
USH1G	124590	broad.mit.edu	37	17	72916252	72916252	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr17:72916252C>T	uc002jme.1	-	2	862	c.679G>A	c.(679-681)GGC>AGC	p.G227S	USH1G_uc010wro.1_Missense_Mutation_p.G124S	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	227					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					GTGCCTTCGCCGCCCTGCTTG	0.692													22	30					0	0	1	0	0
PPP4R1	9989	broad.mit.edu	37	18	9549244	9549244	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr18:9549244G>A	uc002koe.1	-	19	2758	c.2640C>T	c.(2638-2640)AAC>AAT	p.N880N	PPP4R1_uc002kof.2_Silent_p.N297N|PPP4R1_uc010wzo.1_Silent_p.N726N|PPP4R1_uc002kod.1_Silent_p.N863N	NM_001042388	NP_001035847	Q8TF05	PP4R1_HUMAN	protein phosphatase 4, regulatory subunit 1	880	HEAT 14.				protein phosphorylation|signal transduction	protein phosphatase 4 complex	protein binding|protein phosphatase type 4 regulator activity			skin(1)	1						GCACTCGCACGTTAGGAACCC	0.478													61	65					0	0	1	0	0
FSTL3	10272	broad.mit.edu	37	19	681421	681421	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr19:681421G>A	uc002lpk.1	+	4	629	c.594G>A	c.(592-594)GCG>GCA	p.A198A	FSTL3_uc010drt.1_RNA	NM_005860	NP_005851	O95633	FSTL3_HUMAN	follistatin-like 3 glycoprotein precursor	198	Kazal-like 2.				hemopoietic progenitor cell differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of osteoclast differentiation|ossification|positive regulation of cell-cell adhesion|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	extracellular space|nucleus	activin binding|fibronectin binding				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCGAGCGGCGCCCTGCCCTG	0.692			T	CCND1	B-CLL								5	6					0	0	1	0	0
CYP26B1	56603	broad.mit.edu	37	2	72360210	72360210	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr2:72360210C>T	uc002sih.1	-	5	1088	c.1088G>A	c.(1087-1089)CGC>CAC	p.R363H	CYP26B1_uc010yra.1_Missense_Mutation_p.R346H|CYP26B1_uc010yrb.1_Missense_Mutation_p.R288H	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	363					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						CGTGAACAGGCGCATGACCTC	0.677													15	20					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								21	38					0	0	1	0	0
CD93	22918	broad.mit.edu	37	20	23065004	23065004	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr20:23065004C>T	uc002wsv.2	-	1	1974	c.1826G>A	c.(1825-1827)CGG>CAG	p.R609Q		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	609	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CTTCGCTCTCCGCTTGCGATA	0.577													68	86					0	0	1	0	0
CHMP4B	128866	broad.mit.edu	37	20	32439895	32439895	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr20:32439895G>A	uc002xaa.2	+	4	652	c.496G>A	c.(496-498)GCG>ACG	p.A166T		NM_176812	NP_789782	Q9H444	CHM4B_HUMAN	chromatin modifying protein 4B	166	Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|late endosome membrane	protein binding			ovary(1)|central_nervous_system(1)	2						TGAGCTCATGGCGGAATTAGA	0.493													11	114					0	0	1	0	0
SON	6651	broad.mit.edu	37	21	34921914	34921914	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr21:34921914A>G	uc002yse.1	+	3	426	c.377A>G	c.(376-378)GAA>GGA	p.E126G	SON_uc002ysb.1_Missense_Mutation_p.E126G|SON_uc002ysc.2_Missense_Mutation_p.E126G|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	126				E -> K (in Ref. 7; BAB14985).	anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						aaagaaaaggaaaaaaaaTAT	0.264											OREG0003562	type=REGULATORY REGION|Gene=AK091233|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	13	17					0	0	1	0	0
LZTR1	8216	broad.mit.edu	37	22	21348256	21348256	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr22:21348256G>A	uc002zto.2	+	13	1500	c.1397G>A	c.(1396-1398)CGG>CAG	p.R466Q	LZTR1_uc002ztn.2_Missense_Mutation_p.R425Q|LZTR1_uc011ahy.1_Missense_Mutation_p.R447Q|LZTR1_uc010gsr.1_Missense_Mutation_p.R337Q|LZTR1_uc002ztp.2_5'Flank	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	466	BTB 1.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			GTCACAGCGCGGAGCCGCTGG	0.647													12	15					0	0	1	0	0
FBLN1	2192	broad.mit.edu	37	22	45931164	45931164	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr22:45931164C>A	uc003bgj.1	+	8	1016	c.869C>A	c.(868-870)CCC>CAC	p.P290H	FBLN1_uc003bgg.1_Missense_Mutation_p.P290H|FBLN1_uc003bgh.2_Missense_Mutation_p.P290H|FBLN1_uc010gzz.2_Missense_Mutation_p.P328H|FBLN1_uc003bgi.1_Missense_Mutation_p.P290H	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	290	EGF-like 3; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CGCTGCCGACCCAAGCTACAG	0.483													22	38					3.62473e-10	3.67883e-10	1	1	0
SLC6A6	6533	broad.mit.edu	37	3	14508027	14508027	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr3:14508027G>A	uc010heg.2	+	14	1027	c.736G>A	c.(736-738)GTC>ATC	p.V246I	SLC6A6_uc003byq.2_Missense_Mutation_p.V246I|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	246	Helical; Name=5; (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						CTTGCAGGTCGTCTACTTCAC	0.507													27	41					0	0	1	0	0
ZNF197	10168	broad.mit.edu	37	3	44683423	44683423	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr3:44683423G>A	uc003cnm.2	+	6	1007	c.801G>A	c.(799-801)GTG>GTA	p.V267V	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	267	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		ATGAGGAGGTGACATCAAAGC	0.413													4	13					0	0	1	0	0
KIAA1257	57501	broad.mit.edu	37	3	128706646	128706646	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr3:128706646G>T	uc003elj.3	-	4	676	c.480C>A	c.(478-480)GAC>GAA	p.D160E	KIAA1257_uc003elg.1_Missense_Mutation_p.D160E|KIAA1257_uc003eli.3_Missense_Mutation_p.D48E	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	160											0						CCCAGGCTTTGTCACCTTCGT	0.453													9	10					3.09899e-07	3.09899e-07	1	1	0
ATP10D	57205	broad.mit.edu	37	4	47556756	47556756	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr4:47556756T>C	uc003gxk.1	+	11	1813	c.1649T>C	c.(1648-1650)GTA>GCA	p.V550A	ATP10D_uc003gxl.1_5'UTR	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	550	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						ACAGACGTGGTACCAGACACC	0.363													25	33					0	0	1	0	0
CHD1	1105	broad.mit.edu	37	5	98207864	98207864	+	Missense_Mutation	SNP	A	G	G	rs150956514	by1000genomes	TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr5:98207864A>G	uc003knf.2	-	27	3900	c.3752T>C	c.(3751-3753)ATA>ACA	p.I1251T	CHD1_uc010jbn.2_5'UTR	NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	1251					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	GCCCCAGTCTATATCAAAATG	0.348													5	71					0	0	1	0	0
PHF15	23338	broad.mit.edu	37	5	133914911	133914911	+	Silent	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr5:133914911C>T	uc003kzo.1	+	11	2456	c.2277C>T	c.(2275-2277)AGC>AGT	p.S759S	PHF15_uc011cxt.1_Silent_p.S803S|PHF15_uc003kzk.2_Silent_p.S819S|PHF15_uc003kzm.2_Silent_p.S760S|PHF15_uc003kzn.2_3'UTR	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	759					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGGAGATGAGCGACTCAGATG	0.617													24	27					0	0	1	0	0
PITX1	5307	broad.mit.edu	37	5	134364859	134364859	+	Silent	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr5:134364859G>A	uc010jea.2	-	3	948	c.555C>T	c.(553-555)GCC>GCT	p.A185A	PITX1_uc011cxy.1_Silent_p.A185A	NM_002653	NP_002644	P78337	PITX1_HUMAN	paired-like homeodomain transcription factor 1	185	Interacts with PIT-1 (By similarity).					nucleolus	sequence-specific DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	READ - Rectum adenocarcinoma(2;0.0607)		GGCTCTTGGCGGCCCAGTTGT	0.632													16	41					0	0	1	0	0
CUL7	9820	broad.mit.edu	37	6	43010826	43010826	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr6:43010826C>T	uc003otq.2	-	18	3751	c.3448G>A	c.(3448-3450)GTG>ATG	p.V1150M	CUL7_uc010jyg.2_Missense_Mutation_p.V429M|CUL7_uc011dvb.1_Missense_Mutation_p.V1234M|CUL7_uc010jyh.2_Missense_Mutation_p.V143M|KLC4_uc003otr.1_RNA	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1150					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TTCTCCACCACGGCCCGCCAA	0.602													11	18					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152469200	152469200	+	Missense_Mutation	SNP	C	T	T	rs148008634	byFrequency	TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr6:152469200C>T	uc010kiw.2	-	137	25558	c.24956G>A	c.(24955-24957)CGG>CAG	p.R8319Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R2843Q|SYNE1_uc003qos.3_Missense_Mutation_p.R2843Q|SYNE1_uc003qot.3_Missense_Mutation_p.R8248Q|SYNE1_uc003qou.3_Missense_Mutation_p.R8319Q|SYNE1_uc003qop.3_Missense_Mutation_p.R481Q|SYNE1_uc011eez.1_Missense_Mutation_p.R521Q|SYNE1_uc003qoq.3_Missense_Mutation_p.R521Q|SYNE1_uc003qor.3_Missense_Mutation_p.R1219Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8319	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AACAGCTCCCCGGAGGTAGAA	0.493										HNSCC(10;0.0054)			14	24					0	0	1	0	0
WIPI2	26100	broad.mit.edu	37	7	5256279	5256279	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr7:5256279C>T	uc003snv.2	+	5	683	c.467C>T	c.(466-468)CCA>CTA	p.P156L	WIPI2_uc003snw.2_Missense_Mutation_p.P156L|WIPI2_uc003snx.2_Missense_Mutation_p.P138L|WIPI2_uc003sny.2_Missense_Mutation_p.P138L|WIPI2_uc010ksv.2_Missense_Mutation_p.P12L|WIPI2_uc003snz.2_Missense_Mutation_p.P97L|WIPI2_uc003soa.2_Missense_Mutation_p.P97L	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	156					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		GAGACGCCTCCAAACCCTGCA	0.463													16	21					0	0	1	0	0
NPVF	64111	broad.mit.edu	37	7	25266332	25266332	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr7:25266332G>C	uc003sxo.2	-	2	499	c.452C>G	c.(451-453)TCC>TGC	p.S151C		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	151					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						TGAATGCATGGATCCTTGACA	0.468													62	92					0	0	1	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92825189	92825189	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr7:92825189G>T	uc003umm.2	-	8	1250	c.1227C>A	c.(1225-1227)TTC>TTA	p.F409L	HEPACAM2_uc003uml.2_Missense_Mutation_p.F397L|HEPACAM2_uc010lff.2_Nonsense_Mutation_p.S389*|HEPACAM2_uc011khy.1_Missense_Mutation_p.F432L	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	409	Cytoplasmic (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						CATATATTCCGAAGTCATCCA	0.383													28	38					8.58068e-18	8.8407e-18	1	1	0
LRRC67	286187	broad.mit.edu	37	8	67923054	67923054	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr8:67923054T>A	uc003xxc.2	-	5	593	c.448A>T	c.(448-450)ATA>TTA	p.I150L		NM_001013626	NP_001013648	Q7Z4L9	LRC67_HUMAN	leucine rich repeat containing 67	150	LRR 6.										0						ATATTCAATATACAGAGGGAT	0.308													24	24					0	0	1	0	0
OSR2	116039	broad.mit.edu	37	8	99962883	99962883	+	Splice_Site	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr8:99962883G>A	uc003yir.2	+	3	1192	c.657_splice	c.e3-1	p.R219_splice	OSR2_uc010mbn.2_Splice_Site_p.R219_splice|OSR2_uc003yiq.2_Splice_Site_p.R219_splice|OSR2_uc011lgx.1_Splice_Site_p.R340_splice	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a						bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding			central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			TTGATTTTCAGATACATCCAT	0.358													6	8					0	0	1	0	0
KIAA0020	9933	broad.mit.edu	37	9	2829886	2829886	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr9:2829886C>T	uc003zhp.1	-	8	836	c.740G>A	c.(739-741)CGG>CAG	p.R247Q	KIAA0020_uc010mhc.1_Missense_Mutation_p.R246Q|KIAA0020_uc003zhq.1_Missense_Mutation_p.R246Q	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	247	Pumilio 3.|PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		TTCCGCATGCCGCAGCATCTT	0.433													56	124					0	0	1	0	0
GLIS3	169792	broad.mit.edu	37	9	4286155	4286155	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr9:4286155G>A	uc003zhx.1	-	2	984	c.271C>T	c.(271-273)CTC>TTC	p.L91F	GLIS3_uc003zic.1_Missense_Mutation_p.L91F|GLIS3_uc003zie.1_Missense_Mutation_p.L91F|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_5'UTR|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_5'UTR|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron|GLIS3_uc003zii.1_Missense_Mutation_p.L91F	NM_001042413	NP_001035878	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform a	325					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CCATTGGTGAGCATTTGTCTC	0.562													33	50					0	0	1	0	0
PTGES2	80142	broad.mit.edu	37	9	130885212	130885212	+	Splice_Site	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr9:130885212C>T	uc004bti.2	-	5	1365	c.887_splice	c.e5+1	p.R296_splice	PTGES2_uc004btj.2_RNA|PTGES2_uc004btk.2_Splice_Site_p.R105_splice|PTGES2_uc004btl.2_Splice_Site_p.R105_splice|PTGES2_uc004btm.2_RNA	NM_025072	NP_079348	Q9H7Z7	PGES2_HUMAN	prostaglandin E synthase 2						cell redox homeostasis|prostaglandin biosynthetic process	Golgi membrane|integral to membrane|mitochondrion|perinuclear region of cytoplasm	electron carrier activity|prostaglandin-E synthase activity|protein binding|protein disulfide oxidoreductase activity				0						CACACACTTGCCTGCTCTTGA	0.642													15	22					0	0	1	0	0
HCCS	3052	broad.mit.edu	37	X	11133053	11133053	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chrX:11133053C>A	uc004cuk.2	+	3	465	c.199C>A	c.(199-201)CCC>ACC	p.P67T	HCCS_uc004cuj.2_Missense_Mutation_p.P67T|HCCS_uc004cul.1_Missense_Mutation_p.P67T	NM_005333	NP_005324	P53701	CCHL_HUMAN	holocytochrome c synthase	67					organ morphogenesis|oxidation-reduction process	mitochondrial inner membrane	holocytochrome-c synthase activity|metal ion binding				0						CGTGGAGTGTCCCATTAGGGG	0.498													43	56					1.41504e-22	1.48034e-22	1	1	0
GABRE	2564	broad.mit.edu	37	X	151123361	151123361	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chrX:151123361C>T	uc004ffi.2	-	9	1387	c.1333G>A	c.(1333-1335)GCC>ACC	p.A445T	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	445	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCACAGCAGGCCAGCTTGGAG	0.617													21	22					0	0	1	0	0
ATP2B3	492	broad.mit.edu	37	X	152845601	152845601	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chrX:152845601C>T	uc004fht.1	+	20	3634	c.3508C>T	c.(3508-3510)CGC>TGC	p.R1170C	ATP2B3_uc004fhs.1_3'UTR|ATP2B3_uc010nuf.1_Missense_Mutation_p.R307C|ATP2B3_uc004fhu.1_Missense_Mutation_p.R122C	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	1170	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAACGAGGAGCGCCTCCGGGC	0.592													67	68					0	0	1	0	0
TTC17	55761	broad.mit.edu	37	11	43465682	43465683	+	In_Frame_Ins	INS	-	ACA	ACA			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr11:43465682_43465683insACA	uc001mxi.2	+	18	2602_2603	c.2588_2589insACA	c.(2587-2589)GGT>GGACAT	p.863_864insH	TTC17_uc001mxh.2_In_Frame_Ins_p.920_921insH|TTC17_uc010rfj.1_In_Frame_Ins_p.863_864insH|TTC17_uc001mxj.2_In_Frame_Ins_p.690_691insH	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	863_864							binding			ovary(5)	5						GTAGAAACAGGTCAGATAGAAA	0.421													7	55	---	---	---	---					
LOC284232	284232	broad.mit.edu	37	13	19420047	19420053	+	RNA	DEL	TTCGTAT	-	-	rs117180361	by1000genomes	TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr13:19420047_19420053delTTCGTAT	uc010tcj.1	-	1		c.26057_26063delATACGAA				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ATAACATTTCTTCGTATTTTATATTTT	0.246													2	4	---	---	---	---					
SLFN12	55106	broad.mit.edu	37	17	33749492	33749493	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr17:33749492_33749493insA	uc002hji.3	-	2	932_933	c.555_556insT	c.(553-558)TTTGATfs	p.F185fs	SLFN12_uc002hjj.3_Frame_Shift_Ins_p.F185fs|SLFN12_uc010cts.2_Frame_Shift_Ins_p.F185fs	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	185_186							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TCTGTTCTATCAAAAAAAACCC	0.366													30	77	---	---	---	---					
KCNG2	26251	broad.mit.edu	37	18	77623899	77623899	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr18:77623899delT	uc010xfl.1	+	1	232	c.232delT	c.(232-234)TTCfs	p.F78fs		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	78	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CCCGTGCGCCTTCCGCGCCAT	0.716													2	4	---	---	---	---					
SLC6A19	340024	broad.mit.edu	37	5	1216915	1216915	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DU-5874-01A-11D-1705-08	TCGA-DU-5874-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	85d915b8-0184-4ec7-93ad-e9ffa2f5743b	0b75be09-bdd0-435e-84ad-0624c781a430	g.chr5:1216915delC	uc003jbw.3	+	8	1084	c.1028delC	c.(1027-1029)ACCfs	p.T343fs		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	343	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AACATCCTGACCCTCATCAAC	0.657													48	67	---	---	---	---					
