Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTOR	2475	broad.mit.edu	37	1	11177096	11177096	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:11177096C>T	uc001asd.2	-	50	7102	c.6981G>A	c.(6979-6981)ATG>ATA	p.M2327I	MTOR_uc001asc.2_Missense_Mutation_p.M532I	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	2327	PI3K/PI4K.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CAACCATTGACATGACCGCTA	0.383000													33	11					0	0	0.064281	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12885289	12885289	+	Silent	SNP	G	T	T	rs148273194	by1000genomes	TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:12885289G>T	uc001auk.2	-	4	1018	c.822C>A	c.(820-822)CTC>CTA	p.L274L		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	274	LRR 3.										0						GGCACTGGGAGAGATGCTTCA	0.458000													4	7					0.00024832	0.000269013	0.009096	1	0
INSL5	10022	broad.mit.edu	37	1	67266844	67266844	+	Missense_Mutation	SNP	G	A	A	rs146406445	byFrequency	TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:67266844G>A	uc001dcw.2	-	1	96	c.61C>T	c.(61-63)CGG>TGG	p.R21W		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	21						extracellular region	hormone activity				0						TCCTTGCTCCGCACTTCTGAG	0.453000													12	20					0	0	0.010729	0	0
ASB17	127247	broad.mit.edu	37	1	76387892	76387892	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:76387892A>G	uc001dhe.1	-	2	694	c.554T>C	c.(553-555)ATA>ACA	p.I185T	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	185					intracellular signal transduction					ovary(1)	1						GTAGAGTACTATTGTTAAGAC	0.358000													23	8					0	0	0.018920	0	0
TCHH	7062	broad.mit.edu	37	1	152085364	152085364	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:152085364A>G	uc001ezp.2	-	2	329	c.329T>C	c.(328-330)TTA>TCA	p.L110S	TCHH_uc009wne.1_Missense_Mutation_p.L110S	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	110					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCGATCTTGTAACAGGCTCTC	0.542000													94	73					0	0	0.048971	0	0
HRNR	388697	broad.mit.edu	37	1	152187067	152187067	+	Silent	SNP	A	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:152187067A>T	uc001ezt.1	-	3	7114	c.7038T>A	c.(7036-7038)TCT>TCA	p.S2346S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2346	25.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCATGAGCTAGACTCGTGGT	0.572000													41	552					0	0	0.048971	0	0
FCRL1	115350	broad.mit.edu	37	1	157766909	157766909	+	Silent	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:157766909C>T	uc001frg.2	-	10	1313	c.1200G>A	c.(1198-1200)GGG>GGA	p.G400G	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Silent_p.G399G|FCRL1_uc001fri.2_Missense_Mutation_p.G358E|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	400	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCATATGTGTCCCCAGGGTTT	0.353000													25	68					0	0	0.027356	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642976	1642976	+	Silent	SNP	A	C	C			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr11:1642976A>C	uc009ycy.1	-	3	573	c.486T>G	c.(484-486)GGT>GGG	p.G162G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	176	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCCCCTTGGAACCCCCACAGG	0.662000													6	56					0	0	0.045705	0	0
OR10S1	219873	broad.mit.edu	37	11	123847515	123847515	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr11:123847515G>A	uc001pzm.1	-	1	884	c.884C>T	c.(883-885)CCA>CTA	p.P295L		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	295	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GTTGAGCATTGGAGTTACGAT	0.542000													87	59					0	0	0.048971	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716187	13716187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr12:13716187G>A	uc001rbt.2	-	13	4164	c.3985C>T	c.(3985-3987)CGA>TGA	p.R1329*		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1329	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCCATGAATCGGCCCTTGTCT	0.597000													28	31					0	0	0.034045	0	0
FRY	10129	broad.mit.edu	37	13	32869503	32869503	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr13:32869503A>G	uc001utx.2	+	61	9444	c.8948A>G	c.(8947-8949)AAC>AGC	p.N2983S	FRY_uc010tdw.1_RNA|FRY_uc001utz.2_Missense_Mutation_p.N514S|FRY_uc010tdx.1_Missense_Mutation_p.N353S	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2983					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		ATGGAGCTGAACATGGAGATC	0.532000													3	52					0	0	0.004672	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113140437	113140437	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr13:113140437A>G	uc001vse.1	-	22	2781	c.2594T>C	c.(2593-2595)CTG>CCG	p.L865P	TUBGCP3_uc010tjq.1_Missense_Mutation_p.L855P	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	865					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					GCTGGTCGTCAGTAACACCAA	0.473000													2	9					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373000													3	81					0	0	0.004672	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088798	94088798	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr14:94088798C>A	uc001ybv.1	+	28	4837	c.4754C>A	c.(4753-4755)CCA>CAA	p.P1585Q	KIAA1409_uc001ybs.1_Missense_Mutation_p.P1563Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1740						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TGCGGTAGCCCACTGACGCTG	0.582000													4	88					0.00909568	0.00965256	0.009096	1	0
C15orf2	23742	broad.mit.edu	37	15	24921723	24921723	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr15:24921723C>T	uc001ywo.2	+	1	1183	c.709C>T	c.(709-711)CCT>TCT	p.P237S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	237					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTTGGAAGGCCCTGCCATGCC	0.622000													11	0					0	0	0.069234	0	0
ADAM10	102	broad.mit.edu	37	15	58925546	58925546	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr15:58925546C>T	uc002afd.1	-	9	1469	c.1025G>A	c.(1024-1026)GGA>GAA	p.G342E	ADAM10_uc010bgc.1_RNA|ADAM10_uc010ugz.1_Missense_Mutation_p.G41E|ADAM10_uc002afe.1_RNA	NM_001110	NP_001101	O14672	ADA10_HUMAN	ADAM metallopeptidase domain 10 precursor	342	Peptidase M12B.|Extracellular (Potential).				cell-cell signaling|constitutive protein ectodomain proteolysis|epidermal growth factor receptor signaling pathway|in utero embryonic development|integrin-mediated signaling pathway|monocyte activation|negative regulation of cell adhesion|Notch receptor processing|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of T cell chemotaxis|protein phosphorylation|response to tumor necrosis factor	cell surface|endomembrane system|Golgi-associated vesicle|integral to membrane|nucleus|plasma membrane	integrin binding|metalloendopeptidase activity|protein homodimerization activity|protein kinase binding|SH3 domain binding|zinc ion binding			skin(2)	2				GBM - Glioblastoma multiforme(80;0.202)		TTCACATATTCCTCCAGAGCT	0.343000													16	6					0	0	0.033300	0	0
ISL2	64843	broad.mit.edu	37	15	76630688	76630688	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr15:76630688T>C	uc002bbw.1	+	3	422	c.344T>C	c.(343-345)TTC>TCC	p.F115S		NM_145805	NP_665804	Q96A47	ISL2_HUMAN	ISL LIM homeobox 2	115	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATCGAGTGCTTCCGCTGCTCC	0.677000													2	4					0	0	0.004672	0	0
HEATR3	55027	broad.mit.edu	37	16	50136288	50136288	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr16:50136288C>T	uc002efw.2	+	14	2024	c.1862C>T	c.(1861-1863)TCG>TTG	p.S621L	HEATR3_uc002efx.2_Missense_Mutation_p.S535L	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	621							binding			ovary(1)|skin(1)	2						GAAAGAGCCTCGATTCAAATT	0.378000													32	84					0	0	0.054565	0	0
NOS2	4843	broad.mit.edu	37	17	26107803	26107803	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr17:26107803C>T	uc002gzu.2	-	9	1258	c.994G>A	c.(994-996)GAA>AAA	p.E332K	NOS2_uc010crh.1_Missense_Mutation_p.E332K|NOS2_uc010wab.1_Missense_Mutation_p.E332K	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	332					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	TTGGGATGTTCCATGGCCACC	0.597000													15	26					0	0	0.024245	0	0
WNT3	7473	broad.mit.edu	37	17	44845704	44845704	+	Silent	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr17:44845704G>A	uc002ikv.2	-	4	1169	c.1050C>T	c.(1048-1050)GAC>GAT	p.D350D		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	350					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			AGGTGTGCACGTCGTAGATGC	0.607000													3	49					0	0	0.004672	0	0
CACNA1G	8913	broad.mit.edu	37	17	48669423	48669423	+	Silent	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr17:48669423C>T	uc002irk.1	+	13	3252	c.2880C>T	c.(2878-2880)GTC>GTT	p.V960V	CACNA1G_uc002iri.1_Silent_p.V960V|CACNA1G_uc002irj.1_Silent_p.V960V|CACNA1G_uc002irl.1_Silent_p.V960V|CACNA1G_uc002irm.1_Silent_p.V960V|CACNA1G_uc002irn.1_Silent_p.V960V|CACNA1G_uc002iro.1_Silent_p.V960V|CACNA1G_uc002irp.1_Silent_p.V960V|CACNA1G_uc002irq.1_Silent_p.V960V|CACNA1G_uc002irr.1_Silent_p.V960V|CACNA1G_uc002irs.1_Silent_p.V960V|CACNA1G_uc002irt.1_Silent_p.V960V|CACNA1G_uc002irv.1_Silent_p.V960V|CACNA1G_uc002irw.1_Silent_p.V960V|CACNA1G_uc002iru.1_Silent_p.V960V|CACNA1G_uc002irx.1_Silent_p.V873V|CACNA1G_uc002iry.1_Silent_p.V873V|CACNA1G_uc002irz.1_Silent_p.V873V|CACNA1G_uc002isa.1_Silent_p.V873V|CACNA1G_uc002isb.1_Silent_p.V873V|CACNA1G_uc002isc.1_Silent_p.V873V|CACNA1G_uc002isd.1_Silent_p.V873V|CACNA1G_uc002ise.1_Silent_p.V873V|CACNA1G_uc002isf.1_Silent_p.V873V|CACNA1G_uc002isg.1_Silent_p.V873V|CACNA1G_uc002ish.1_Silent_p.V873V|CACNA1G_uc002isi.1_Silent_p.V873V	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	960	II.|Helical; Name=S6 of repeat II; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ATTTGCTGGTCGCCATTCTGG	0.572000													15	20					0	0	0.038395	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373000													7	148					0	0	0.029380	0	0
SDK2	54549	broad.mit.edu	37	17	71429886	71429886	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr17:71429886T>C	uc010dfm.2	-	10	1297	c.1297A>G	c.(1297-1299)ATC>GTC	p.I433V	SDK2_uc010dfn.2_Missense_Mutation_p.I112V	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	433	Ig-like C2-type 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGCCAAGTGATAGCTGGTCGG	0.577000													3	5					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179614115	179614115	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr2:179614115G>A	uc002unb.2	-	46	13236	c.13012C>T	c.(13012-13014)CAT>TAT	p.H4338Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGCACCATGCACAAATCTG	0.403000													63	67					0	0	0.048971	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								22	39					0	0	0.069288	0	0
DIS3L2	129563	broad.mit.edu	37	2	233028242	233028242	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr2:233028242G>A	uc010fxz.2	+	9	1300	c.1024G>A	c.(1024-1026)GTG>ATG	p.V342M	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	342							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		AGAGTATGGCGTGGATTTCTC	0.453000													14	37					0	0	0.020292	0	0
XRN2	22803	broad.mit.edu	37	20	21328891	21328891	+	Silent	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr20:21328891G>A	uc002wsf.1	+	18	1868	c.1773G>A	c.(1771-1773)CCG>CCA	p.P591P	XRN2_uc002wsg.1_Silent_p.P515P|XRN2_uc010zsk.1_Silent_p.P537P	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	591					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						GTACGAAACCGGTAAGCTTAA	0.338000													3	73					0	0	0.004672	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057415	46057415	+	Silent	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr21:46057415C>T	uc002zfq.2	+	1	143	c.81C>T	c.(79-81)TGC>TGT	p.C27C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	27	15 X 5 AA repeats of C-C-X(3).|1.					keratin filament					0						AGAGCTGCTGCGAGCCCTGCT	0.682000													50	77					0	0	0.048971	0	0
CABIN1	23523	broad.mit.edu	37	22	24567940	24567940	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr22:24567940C>T	uc002zzi.1	+	34	6144	c.6017C>T	c.(6016-6018)CCC>CTC	p.P2006L	CABIN1_uc002zzj.1_Missense_Mutation_p.P1927L|CABIN1_uc002zzl.1_Missense_Mutation_p.P2006L|CABIN1_uc010gul.1_5'UTR	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	2006					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAAGCTACCCCCAGCATGGCC	0.647000													10	13					0	0	0.058154	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069362	114069362	+	Silent	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr3:114069362G>A	uc003ebi.2	-	4	1743	c.1563C>T	c.(1561-1563)CCC>CCT	p.P521P	ZBTB20_uc003ebj.2_Silent_p.P448P|ZBTB20_uc010hqp.2_Silent_p.P448P|ZBTB20_uc003ebk.2_Silent_p.P448P|ZBTB20_uc003ebl.2_Silent_p.P448P|ZBTB20_uc003ebm.2_Silent_p.P448P|ZBTB20_uc003ebn.2_Silent_p.P448P|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GGAAAGGCTTGGGGCCACTGC	0.627000													28	45					0	0	0.041601	0	0
BFSP2	8419	broad.mit.edu	37	3	133119336	133119336	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr3:133119336C>T	uc003epn.1	+	1	547	c.409C>T	c.(409-411)CGG>TGG	p.R137W		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	137	Potential.|Rod.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						AACACAACTGCGGATGCACCT	0.607000													18	28					0	0	0.043863	0	0
GPR98	84059	broad.mit.edu	37	5	90000251	90000251	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr5:90000251A>T	uc003kju.2	+	36	8428	c.8332A>T	c.(8332-8334)ATT>TTT	p.I2778F	GPR98_uc003kjt.2_Missense_Mutation_p.I484F|GPR98_uc003kjv.2_Missense_Mutation_p.I378F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2778	Calx-beta 19.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGATGACAACATTCCTGAGGA	0.333000													4	3					0	0	0.014758	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													5	6					0	0	0.014758	0	0
FNIP1	96459	broad.mit.edu	37	5	131013435	131013435	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr5:131013435C>T	uc003kvs.1	-	13	1622	c.1480G>A	c.(1480-1482)GCA>ACA	p.A494T	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.A466T|FNIP1_uc010jdm.1_Missense_Mutation_p.A449T|FNIP1_uc003kvu.2_Missense_Mutation_p.A494T	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	494					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		TGAGTCTTTGCCAACATGTCC	0.383000													33	56					0	0	0.054565	0	0
RELN	5649	broad.mit.edu	37	7	103180840	103180840	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr7:103180840G>A	uc003vca.2	-	44	6894	c.6734C>T	c.(6733-6735)CCC>CTC	p.P2245L	RELN_uc010liz.2_Missense_Mutation_p.P2245L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2245					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TAGGAGCACGGGTTGACTCCT	0.488000													52	39					0	0	0.048971	0	0
KLF14	136259	broad.mit.edu	37	7	130418291	130418291	+	Silent	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr7:130418291A>G	uc003vqk.1	-	1	570	c.570T>C	c.(568-570)CCT>CCC	p.P190P		NM_138693	NP_619638	Q8TD94	KLF14_HUMAN	Kruppel-like factor 14	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(18;0.0435)					GCTTGGCAGCAGGTGTGACAG	0.701000													7	9					0	0	0.029380	0	0
MKRN1	23608	broad.mit.edu	37	7	140154990	140154990	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr7:140154990G>A	uc003vvt.2	-	7	1366	c.1141C>T	c.(1141-1143)CCA>TCA	p.P381S	MKRN1_uc003vvs.2_Missense_Mutation_p.P317S|MKRN1_uc011krd.1_Missense_Mutation_p.P115S	NM_013446	NP_038474	Q9UHC7	MKRN1_HUMAN	makorin ring finger protein 1 isoform 1	381	C3H1-type 4.						ligase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.00956)					CCTCCAAATGGGCAGCTCCCA	0.483000													8	135					0	0	0.069234	0	0
EPHB6	2051	broad.mit.edu	37	7	142564303	142564303	+	Silent	SNP	G	A	A	rs111424188		TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr7:142564303G>A	uc011kst.1	+	10	2314	c.1527G>A	c.(1525-1527)CCG>CCA	p.P509P	EPHB6_uc011ksu.1_Silent_p.P509P|EPHB6_uc003wbs.2_Silent_p.P217P|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Silent_p.P217P|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	509	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TGTCCTGGCCGCAGCCCGACC	0.582000													3	64					0	0	0.009096	0	0
PROSC	11212	broad.mit.edu	37	8	37623846	37623846	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr8:37623846C>G	uc003xkh.2	+	4	369	c.292C>G	c.(292-294)CAG>GAG	p.Q98E		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	98							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	TGGCCACCTACAGAAACAAAA	0.358000													53	86					0	0	0.048971	0	0
TNFRSF11B	4982	broad.mit.edu	37	8	119945444	119945444	+	Silent	SNP	G	A	A			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr8:119945444G>A	uc003yon.3	-	2	449	c.126C>T	c.(124-126)GAC>GAT	p.D42D	TNFRSF11B_uc010mdc.1_RNA	NM_002546	NP_002537	O00300	TR11B_HUMAN	osteoprotegerin precursor	42	TNFR-Cys 1.				apoptosis|skeletal system development		cytokine activity|receptor activity			central_nervous_system(2)	2	all_cancers(13;3.71e-26)|Lung NSC(37;1.69e-07)|Ovarian(258;0.018)|all_neural(195;0.0592)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00193)			GAGGACATTTGTCACACAACA	0.483000													91	119					0	0	0.048971	0	0
GLIS3	169792	broad.mit.edu	37	9	3829411	3829411	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr9:3829411C>G	uc003zhw.1	-	9	2284	c.2090G>C	c.(2089-2091)AGT>ACT	p.S697T	GLIS3_uc003zhx.1_Missense_Mutation_p.S852T|GLIS3_uc010mhf.1_Missense_Mutation_p.S246T|GLIS3_uc003zhv.1_RNA	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	697					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		AGGCACCACACTGCAGGAGCT	0.542000													38	1					0	0	0.074837	0	0
TAF1L	138474	broad.mit.edu	37	9	32630690	32630690	+	Silent	SNP	A	G	G			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr9:32630690A>G	uc003zrg.1	-	1	4978	c.4888T>C	c.(4888-4890)TTG>CTG	p.L1630L	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1630					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGTTGAGTCAAATGCTCATCA	0.433000													149	11					0	0	0.048971	0	0
CRAT	1384	broad.mit.edu	37	9	131857756	131857756	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr9:131857756C>T	uc004bxh.2	-	14	2083	c.1801G>A	c.(1801-1803)GCC>ACC	p.A601T	CRAT_uc004bxg.2_Missense_Mutation_p.A580T|CRAT_uc004bxk.3_Missense_Mutation_p.A580T	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	601					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	GCCAGGCGGGCGGCGTTGGTC	0.667000													15	19					0	0	0.028581	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	5605958	5605958	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chrY:5605958C>T	uc004fqo.2	+	5	4732	c.3998C>T	c.(3997-3999)CCC>CTC	p.P1333L		NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1333	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GGTGATTCCCCCATTATGGAA	0.373000													54	5					0	0	0.048971	0	0
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	AGCT	AGCT	rs141324796	by1000genomes	TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663													4	4	---	---	---	---					
QSER1	79832	broad.mit.edu	37	11	32955602	32955603	+	In_Frame_Ins	INS	-	ATT	ATT			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr11:32955602_32955603insATT	uc001mty.2	+	4	2678_2679	c.2411_2412insATT	c.(2410-2412)CCA>CCATTA	p.805_806insL	QSER1_uc001mtz.1_In_Frame_Ins_p.566_567insL|QSER1_uc001mua.2_In_Frame_Ins_p.310_311insL	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	805_806										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TCTTCAAAACCATTACAACAAC	0.376													39	113	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42796321	42796322	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr19:42796321_42796322delCT	uc002otf.1	+	12	3010_3011	c.2970_2971delCT	c.(2968-2973)ACCTCTfs	p.T990fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	990_991	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CTGGACCCACCTCTCAGCCTCA	0.663			T	DUX4	soft tissue sarcoma								24	9	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560458	147560466	+	In_Frame_Del	DEL	GGCGGCGGC	-	-	rs72269802		TCGA-DU-6393-01A-11D-1705-08	TCGA-DU-6393-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	507dfb6e-244c-408c-a9e4-bce950ceadca	9dd8e0bf-af83-43fa-baf9-c445c02c1014	g.chr4:147560458_147560466delGGCGGCGGC	uc003ikv.2	+	1	414_422	c.166_174delGGCGGCGGC	c.(166-174)GGCGGCGGCdel	p.GGG65del		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	65_67	Poly-Gly.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CGCTggtggtggcggcggcggcggcggcg	0.397													5	3	---	---	---	---					
