Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF2	65122	broad.mit.edu	37	1	12918902	12918902	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:12918902C>A	uc001aum.1	+	2	125	c.38C>A	c.(37-39)GCG>GAG	p.A13E		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	13											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGGAGCTGGCGGGGCAGAGC	0.567000													27	160					1.75199e-13	1.94665e-13	0.007291	1	0
KIAA1522	57648	broad.mit.edu	37	1	33236713	33236713	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:33236713C>T	uc001bvv.2	+	6	1892	c.1756C>T	c.(1756-1758)CGC>TGC	p.R586C	KIAA1522_uc001bvu.1_Missense_Mutation_p.R645C|KIAA1522_uc010ohm.1_Missense_Mutation_p.R597C|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	586	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				CCCCTCAGACCGCTCTGGGCC	0.617000													18	146					0	0	0.004990	0	0
MACF1	23499	broad.mit.edu	37	1	39815264	39815264	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:39815264C>T	uc010oiu.1	+	6	6381	c.6250C>T	c.(6250-6252)CTC>TTC	p.L2084F	MACF1_uc010ois.1_Missense_Mutation_p.L1582F|MACF1_uc001cda.1_Missense_Mutation_p.L1490F|MACF1_uc001cdc.1_Missense_Mutation_p.L669F|MACF1_uc001cdb.1_Missense_Mutation_p.L669F	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3649	LRR 11.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCAGCAGGATCTCTCTGCTTT	0.388000													15	108					0	0	0.004007	0	0
ACOT11	26027	broad.mit.edu	37	1	55072901	55072901	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:55072901G>A	uc001cxm.1	+	14	1547	c.1465G>A	c.(1465-1467)GTG>ATG	p.V489M	ACOT11_uc001cxj.1_Missense_Mutation_p.V367M|ACOT11_uc001cxl.1_Missense_Mutation_p.V489M	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	489	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CCAGGACTTCGTGATCCTGGC	0.627000													10	64					0	0	0.008291	0	0
POLR3GL	84265	broad.mit.edu	37	1	145457015	145457015	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:145457015C>G	uc001enp.1	-	7	653	c.546G>C	c.(544-546)GAG>GAC	p.E182D	NBPF10_uc001emp.3_Intron	NM_032305	NP_115681	Q9BT43	RPC7L_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	182	Glu-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					cttcatcatactcttcttctt	0.313000													7	25					0	0	0.001984	0	0
FLG	2312	broad.mit.edu	37	1	152284454	152284454	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:152284454G>T	uc001ezu.1	-	3	2944	c.2908C>A	c.(2908-2910)CAT>AAT	p.H970N	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	970	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATCCACGATGGTTTCTGGAA	0.582000									Ichthyosis				63	450					1.41401e-22	1.6514e-22	0.014410	1	0
BLZF1	8548	broad.mit.edu	37	1	169347582	169347582	+	Silent	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:169347582A>G	uc001gfx.1	+	4	920	c.483A>G	c.(481-483)TTA>TTG	p.L161L	BLZF1_uc001gfy.2_Silent_p.L161L|BLZF1_uc009wvp.1_Silent_p.L138L	NM_003666	NP_003657	Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	161	Potential.				cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			skin(1)	1	all_hematologic(923;0.208)					ATCGTGAGTTAAAAAAGTTAC	0.343000													59	119					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181684510	181684510	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:181684510G>A	uc001gow.2	+	9	1373	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	CACNA1E_uc009wxs.2_Missense_Mutation_p.G310E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	403	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AAAAATGCTGGAACATCCGCC	0.373000													4	12					0	0	0.000602	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186934577	186934577	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:186934577A>G	uc001gsc.2	+	15	1821	c.1616A>G	c.(1615-1617)GAT>GGT	p.D539G	PLA2G4A_uc010pos.1_Missense_Mutation_p.D479G	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	539	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	GAGCCTCTGGATGTCAAAAGT	0.353000													14	72					0	0	0.001855	0	0
IKBKE	9641	broad.mit.edu	37	1	206649566	206649566	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:206649566G>A	uc001hdz.1	+	6	769	c.401G>A	c.(400-402)CGC>CAC	p.R134H	IKBKE_uc009xbu.1_Missense_Mutation_p.R134H|IKBKE_uc009xbv.1_Missense_Mutation_p.R134H|IKBKE_uc001hea.1_Missense_Mutation_p.R49H	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	134	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					ATTGTGCATCGCGACATCAAG	0.622000													5	68					0	0	0.001168	0	0
OR2M5	127059	broad.mit.edu	37	1	248309136	248309136	+	Silent	SNP	A	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:248309136A>T	uc010pze.1	+	1	687	c.687A>T	c.(685-687)GGA>GGT	p.G229G		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			TTCACATGGGATCTGGAGAGG	0.443000													55	317					0	0	0.014410	0	0
OR2T4	127074	broad.mit.edu	37	1	248525025	248525025	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:248525025G>T	uc001ieh.1	+	1	143	c.143G>T	c.(142-144)GGA>GTA	p.G48V		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	48	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCCTGTTGGGACTCTTCAGA	0.458000													26	159					1.1804e-14	1.33946e-14	0.003954	1	0
PLAU	5328	broad.mit.edu	37	10	75675025	75675025	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr10:75675025G>A	uc001jwa.2	+	10	1133	c.987G>A	c.(985-987)CCG>CCA	p.P329P	C10orf55_uc001jvz.1_Intron|PLAU_uc010qkw.1_Silent_p.P312P|PLAU_uc010qkx.1_Silent_p.P243P|PLAU_uc001jwb.2_RNA|PLAU_uc001jwc.2_Silent_p.P329P|PLAU_uc009xrq.1_Silent_p.P293P	NM_002658	NP_002649	P00749	UROK_HUMAN	plasminogen activator, urokinase isoform 1	329	Peptidase S1.				blood coagulation|chemotaxis|fibrinolysis|proteolysis|regulation of cell adhesion mediated by integrin|regulation of receptor activity|regulation of smooth muscle cell migration|regulation of smooth muscle cell-matrix adhesion|signal transduction	cell surface|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(2)|kidney(1)	3	Prostate(51;0.0112)				Amiloride(DB00594)|Urokinase(DB00013)	ATCTCTATCCGGAGCAGCTGA	0.512000													21	87					0	0	0.002780	0	0
GPAM	57678	broad.mit.edu	37	10	113919721	113919721	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr10:113919721C>T	uc009xxy.1	-	17	2048	c.1850G>A	c.(1849-1851)CGG>CAG	p.R617Q	GPAM_uc001kzp.2_Missense_Mutation_p.R617Q|GPAM_uc001kzq.1_Missense_Mutation_p.R617Q	NM_020918	NP_065969	Q9HCL2	GPAT1_HUMAN	mitochondrial glycerol 3-phosphate	617	Mitochondrial intermembrane (Potential).|Mitochondrial intermembrane (Potential).				phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity			ovary(1)|skin(1)	2				Epithelial(162;0.0306)|all cancers(201;0.123)		GGCCGCCTTCCGCACCAGCTG	0.547000													8	37					0	0	0.003080	0	0
INPP5F	22876	broad.mit.edu	37	10	121551479	121551479	+	Silent	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr10:121551479C>G	uc001leo.2	+	5	709	c.543C>G	c.(541-543)ACC>ACG	p.T181T	INPP5F_uc001len.3_Silent_p.T181T	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	181	SAC.						phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		ATAGCTTGACCTATGACCTGA	0.493000													5	87					0	0	0.000602	0	0
DMBT1	1755	broad.mit.edu	37	10	124357525	124357525	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr10:124357525G>A	uc001lgk.1	+	25	3059	c.2953G>A	c.(2953-2955)GTA>ATA	p.V985I	DMBT1_uc001lgl.1_Missense_Mutation_p.V975I|DMBT1_uc001lgm.1_Missense_Mutation_p.V486I|DMBT1_uc009xzz.1_Missense_Mutation_p.V985I|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	985					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCATCGACAGTAGGTAAATA	0.463000													19	63					0	0	0.008871	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789861	6789861	+	Missense_Mutation	SNP	C	T	T	rs146279135	byFrequency	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr11:6789861C>T	uc001meq.1	-	1	328	c.328G>A	c.(328-330)GCT>ACT	p.A110T		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AGGTCCTCAGCGCTACCCATT	0.522000													16	27					0	0	0.003163	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45950277	45950277	+	Missense_Mutation	SNP	C	T	T	rs148029391	byFrequency	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr11:45950277C>T	uc001nbv.1	+	14	2158	c.2047C>T	c.(2047-2049)CGT>TGT	p.R683C	GYLTL1B_uc001nbw.1_Missense_Mutation_p.R652C|GYLTL1B_uc001nbx.1_Missense_Mutation_p.R683C|GYLTL1B_uc001nby.1_Missense_Mutation_p.R366C|GYLTL1B_uc001nbz.1_Silent_p.I31I	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	683	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		CCCCACCTATCGTGACTGCCT	0.637000													4	55					0	0	0.000602	0	0
OR5M3	219482	broad.mit.edu	37	11	56237501	56237501	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr11:56237501G>T	uc010rjk.1	-	1	473	c.473C>A	c.(472-474)ACA>AAA	p.T158K		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.T158A(1)		ovary(2)	2	Esophageal squamous(21;0.00448)					AGTCCATAATGTTGCTGCCAG	0.428000													28	91					4.87955e-14	5.49809e-14	0.005443	1	0
GANAB	23193	broad.mit.edu	37	11	62400106	62400106	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr11:62400106G>A	uc001nub.2	-	9	960	c.927C>T	c.(925-927)CGC>CGT	p.R309R	GANAB_uc001nua.2_Silent_p.R331R|GANAB_uc001nuc.2_Silent_p.R212R|GANAB_uc010rma.1_Silent_p.R217R|GANAB_uc010rmb.1_Silent_p.R195R	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	309					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						TGCCCAAGTCGCGATGAGGGT	0.532000													47	132					0	0	0.014410	0	0
OR6M1	390261	broad.mit.edu	37	11	123676272	123676272	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr11:123676272G>A	uc010rzz.1	-	1	786	c.786C>T	c.(784-786)AAC>AAT	p.N262N		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CCAGTGAGGAGTTCTGATTGG	0.498000													11	34					0	0	0.008291	0	0
KLRF1	51348	broad.mit.edu	37	12	9995006	9995006	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr12:9995006G>A	uc010sgw.1	+	6	625	c.561G>A	c.(559-561)GTG>GTA	p.V187V	KLRF1_uc009zgw.2_Silent_p.V138V|KLRF1_uc009zgx.2_RNA|KLRF1_uc001qwm.2_RNA|KLRF1_uc009zgy.2_RNA|KLRF1_uc009zgz.2_Intron|KLRF1_uc009zha.2_Intron	NM_016523	NP_057607	Q9NZS2	KLRF1_HUMAN	killer cell lectin-like receptor subfamily F,	188	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	MHC class I receptor activity|sugar binding			large_intestine(1)	1						GGACTTGGGTGGATGGTTCTC	0.358000													11	66					0	0	0.001855	0	0
CUX2	23316	broad.mit.edu	37	12	111748299	111748299	+	Silent	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr12:111748299C>A	uc001tsa.1	+	15	1866	c.1713C>A	c.(1711-1713)ATC>ATA	p.I571I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	571	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AACACAACATCGGGCAGCGGG	0.677000													27	58					1.68575e-08	1.82244e-08	0.007291	1	0
MAPKAPK5	8550	broad.mit.edu	37	12	112321472	112321472	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr12:112321472A>G	uc001tta.2	+	9	1007	c.748A>G	c.(748-750)ATC>GTC	p.I250V	MAPKAPK5_uc001tsz.2_Missense_Mutation_p.I250V|MAPKAPK5_uc001ttb.2_Missense_Mutation_p.I183V	NM_139078	NP_620777	Q8IW41	MAPK5_HUMAN	MAP kinase-activated protein kinase 5 isoform 2	250	Protein kinase.				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)	3						CAGCCGGACTATCCCAAAGGA	0.468000													26	128					0	0	0.005443	0	0
TRIM13	10206	broad.mit.edu	37	13	50586329	50586329	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr13:50586329A>G	uc001vdq.1	+	3	566	c.253A>G	c.(253-255)ATC>GTC	p.I85V	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|TRIM13_uc001vdp.1_Missense_Mutation_p.I88V|TRIM13_uc001vdr.1_Missense_Mutation_p.I85V|TRIM13_uc001vds.1_Missense_Mutation_p.I85V	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	85					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		GTATAACAAGATCAAGATCTC	0.438000													53	28					0	0	0.014410	0	0
CDH24	64403	broad.mit.edu	37	14	23523984	23523984	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr14:23523984C>T	uc001wil.2	-	4	848	c.588G>A	c.(586-588)CTG>CTA	p.L196L	CDH24_uc010akf.2_Silent_p.L196L|CDH24_uc001win.3_Silent_p.L196L	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	196	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		AGAAGAAAGGCAGTCCATCCA	0.597000											OREG0022594	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	24					0	0	0.010729	0	0
NFATC4	4776	broad.mit.edu	37	14	24839464	24839464	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr14:24839464G>A	uc001wpc.2	+	2	1181	c.860G>A	c.(859-861)CGT>CAT	p.R287H	NFATC4_uc010tok.1_Missense_Mutation_p.R350H|NFATC4_uc010tol.1_Missense_Mutation_p.R350H|NFATC4_uc010alr.2_Missense_Mutation_p.R350H|NFATC4_uc010als.2_Missense_Mutation_p.R300H|NFATC4_uc010tom.1_Missense_Mutation_p.R300H|NFATC4_uc010ton.1_Missense_Mutation_p.R300H|NFATC4_uc010too.1_Missense_Mutation_p.R300H|NFATC4_uc010alt.2_Missense_Mutation_p.R319H|NFATC4_uc010top.1_Missense_Mutation_p.R319H|NFATC4_uc010toq.1_Missense_Mutation_p.R319H|NFATC4_uc010alu.2_Intron|NFATC4_uc010tor.1_Missense_Mutation_p.R287H|NFATC4_uc010tos.1_Missense_Mutation_p.R217H|NFATC4_uc010tot.1_Missense_Mutation_p.R275H|NFATC4_uc010tou.1_Missense_Mutation_p.R217H|NFATC4_uc010tov.1_Missense_Mutation_p.R275H|NFATC4_uc010tow.1_Missense_Mutation_p.R217H|NFATC4_uc010alv.2_Missense_Mutation_p.R275H|NFATC4_uc010tox.1_Missense_Mutation_p.R217H|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	287	SP 2; approximate.|Pro-rich.|2 approximate SP repeats.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CTGTCCCGCCGTGGCAGCCTG	0.706000													18	19					0	0	0.006122	0	0
NKX2-8	26257	broad.mit.edu	37	14	37051529	37051529	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr14:37051529C>T	uc001wtx.2	-	1	258	c.66G>A	c.(64-66)GCG>GCA	p.A22A		NM_014360	NP_055175	O15522	NKX28_HUMAN	NK2 homeobox 8	22					liver development|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(36;0.143)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.0113)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0171)		GCAGGTGTTGCGCGTCCTGCT	0.701000													3	17					0	0	0.004672	0	0
ACOT4	122970	broad.mit.edu	37	14	74060453	74060453	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr14:74060453G>A	uc001xoo.2	+	2	759	c.505G>A	c.(505-507)GGC>AGC	p.G169S		NM_152331	NP_689544	Q8N9L9	ACOT4_HUMAN	acyl-CoA thioesterase 4	169					acyl-CoA metabolic process|dicarboxylic acid metabolic process|long-chain fatty acid metabolic process|saturated monocarboxylic acid metabolic process|short-chain fatty acid metabolic process|succinyl-CoA metabolic process|unsaturated monocarboxylic acid metabolic process|very long-chain fatty acid metabolic process	peroxisome	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		TATTGGAGGGGGCCTCTTGGA	0.428000													21	59					0	0	0.010504	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408008	105408008	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr14:105408008C>T	uc010axc.1	-	7	13900	c.13780G>A	c.(13780-13782)GTG>ATG	p.V4594M	AHNAK2_uc001ypx.2_Missense_Mutation_p.V4494M	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4594						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCCGTCTCCACGCTGGGCAGA	0.642000													33	86					0	0	0.009535	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414190	22414190	+	Silent	SNP	T	C	C	rs28695837	by1000genomes	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr15:22414190T>C	uc001yuf.2	+	1	489	c.489T>C	c.(487-489)CAT>CAC	p.H163H		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GCACCACCCATATCATTGTTA	0.493000													7	115					0	0	0.001984	0	0
C15orf2	23742	broad.mit.edu	37	15	24924470	24924470	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr15:24924470T>A	uc001ywo.2	+	1	3930	c.3456T>A	c.(3454-3456)TGT>TGA	p.C1152*		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1152					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GACATGTCTGTTTCCAACTTC	0.428000													16	77					0	0	0.004007	0	0
TJP1	7082	broad.mit.edu	37	15	30058630	30058630	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr15:30058630C>T	uc001zcr.2	-	5	903	c.428G>A	c.(427-429)CGG>CAG	p.R143Q	TJP1_uc010azl.2_Missense_Mutation_p.R131Q|TJP1_uc001zcq.2_Missense_Mutation_p.R147Q|TJP1_uc001zcs.2_Missense_Mutation_p.R143Q	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	143					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		CACACCACTCCGGCCACTTCT	0.468000													21	65					0	0	0.003954	0	0
ITPRIPL2	162073	broad.mit.edu	37	16	19126381	19126381	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr16:19126381G>T	uc002dfu.3	+	1	1128	c.598G>T	c.(598-600)GCC>TCC	p.A200S	ITPRIPL2_uc002dft.2_5'UTR	NM_001034841	NP_001030013	Q3MIP1	IPIL2_HUMAN	inositol 1,4,5-triphosphate receptor interacting	200	Cytoplasmic (Potential).					integral to membrane				skin(2)	2						GCCAGCGCTGGCCCCGGCCTT	0.706000											OREG0023657	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	28					7.03913e-09	7.66163e-09	0.013537	1	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507000													11	53					0	0	0.008291	0	0
SDR42E1	93517	broad.mit.edu	37	16	82034402	82034402	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr16:82034402C>G	uc002fgu.2	-	2	190	c.62G>C	c.(61-63)GGT>GCT	p.G21A		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	21					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						TTACCGAAAACCAAAATAGCC	0.383000													13	56					0	0	0.002450	0	0
TP53	7157	broad.mit.edu	37	17	7578394	7578394	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:7578394T>C	uc002gim.2	-	5	730	c.536A>G	c.(535-537)CAT>CGT	p.H179R	TP53_uc002gig.1_Missense_Mutation_p.H179R|TP53_uc002gih.2_Missense_Mutation_p.H179R|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.H47R|TP53_uc010cng.1_Missense_Mutation_p.H47R|TP53_uc002gii.1_Missense_Mutation_p.H47R|TP53_uc010cnh.1_Missense_Mutation_p.H179R|TP53_uc010cni.1_Missense_Mutation_p.H179R|TP53_uc002gij.2_Missense_Mutation_p.H179R|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.H86R|TP53_uc002gio.2_Missense_Mutation_p.H47R|TP53_uc010vug.1_Missense_Mutation_p.H140R	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	179	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).	Zinc.	H -> Q (in sporadic cancers; somatic mutation).|H -> N (in sporadic cancers; somatic mutation).|H -> R (in sporadic cancers; somatic mutation).|HH -> QS (in a sporadic cancer; somatic mutation).|H -> L (in sporadic cancers; somatic mutation).|H -> D (in sporadic cancers; somatic mutation).|H -> P (in sporadic cancers; somatic mutation).|H -> Y (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.H179R(99)|p.H179Y(74)|p.H179L(31)|p.H179Q(17)|p.H179N(13)|p.H179D(10)|p.P177_C182delPHHERC(8)|p.0?(7)|p.C176_R181delCPHHER(3)|p.R174fs*24(3)|p.H179P(3)|p.R175_E180delRCPHHE(3)|p.H179fs*68(2)|p.H179H(2)|p.P177fs*3(2)|p.V173fs*59(2)|p.R174fs*1(2)|p.K164_P219del(1)|p.C176fs*65(1)|p.P177_H179delPHH(1)|p.V173fs*23(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.H179del(1)|p.E171_H179delEVVRRCPHH(1)|p.R81fs*24(1)|p.R174_E180>K(1)|p.H178fs*6(1)|p.P177_E180delPHHE(1)|p.R42fs*24(1)|p.E171fs*1(1)|p.R174fs*3(1)|p.H178_H179>QY(1)|p.E171fs*61(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCAGCGCTCATGGTGGGGGCA	0.642000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			35	8					0	0	0.003755	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917362	48917362	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:48917362G>A	uc002isv.3	+	2	1407	c.713G>A	c.(712-714)CGG>CAG	p.R238Q	WFIKKN2_uc010dbu.2_Missense_Mutation_p.R145Q	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	238	Ig-like C2-type.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GGCCGGCCCCGGCCTGAGATC	0.622000													7	41					0	0	0.003080	0	0
HSF5	124535	broad.mit.edu	37	17	56540259	56540259	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:56540259G>C	uc002iwi.1	-	4	1550	c.1426C>G	c.(1426-1428)CAG>GAG	p.Q476E		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	476						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCAGATTCCTGTATTGTGCTA	0.468000													85	75					0	0	0.014410	0	0
CSH1	1442	broad.mit.edu	37	17	61972426	61972426	+	Missense_Mutation	SNP	G	A	A	rs139446025	byFrequency	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:61972426G>A	uc002jcs.1	-	5	726	c.610C>T	c.(610-612)CGC>TGC	p.R204C	CSH2_uc002jck.2_Intron|CSH1_uc002jcp.1_3'UTR|CSH1_uc002jcq.1_Missense_Mutation_p.R165C|CSH1_uc002jcr.1_3'UTR|CSH1_uc002jct.1_Missense_Mutation_p.R170C|CSH1_uc002jcu.1_3'UTR|CSH1_uc002jcv.1_Missense_Mutation_p.R109C|CSH1_uc002jcw.2_3'UTR	NM_001317	NP_001308	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 1 isoform 1	204					female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding			skin(1)	1						TGCACCATGCGCAGGAATGTC	0.582000									Russell-Silver_syndrome				18	112					0	0	0.007413	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	G	G	rs138671696	by1000genomes	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:62968690A>G	uc002jez.3	-	4		c.641T>C			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AAAATTCCACAAGTCTCTTGG	0.373000													6	114					0	0	0.001168	0	0
EVPL	2125	broad.mit.edu	37	17	74003589	74003589	+	Silent	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:74003589G>T	uc002jqi.2	-	22	5925	c.5697C>A	c.(5695-5697)GCC>GCA	p.A1899A	EVPL_uc010wss.1_Silent_p.A1921A|EVPL_uc010wst.1_Silent_p.A1369A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1899	Globular 2.|Plectin 5.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGGCCTTCTGGGCGTTAAGCA	0.652000													15	108					2.32078e-09	2.54333e-09	0.003163	1	0
JMJD6	23210	broad.mit.edu	37	17	74716489	74716489	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr17:74716489C>T	uc002jso.2	-	5	1357	c.1033G>A	c.(1033-1035)GAC>AAC	p.D345N	JMJD6_uc002jsn.1_Missense_Mutation_p.D345N|JMJD6_uc010dgz.2_Intron	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	345	Ser-rich.				mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						CTGGAAGAGTCGCTGGAGCTG	0.582000													10	75					0	0	0.006214	0	0
RIOK3	8780	broad.mit.edu	37	18	21047458	21047458	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr18:21047458G>T	uc002kui.3	+	7	1400	c.783G>T	c.(781-783)AAG>AAT	p.K261N	RIOK3_uc010dls.2_Missense_Mutation_p.K261N|RIOK3_uc010xas.1_Missense_Mutation_p.K245N|RIOK3_uc010xat.1_Missense_Mutation_p.R53M	NM_003831	NP_003822	O14730	RIOK3_HUMAN	sudD suppressor of bimD6 homolog	261	ATP (By similarity).|Protein kinase.				chromosome segregation		ATP binding|protein binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(21;0.000106)|all_epithelial(16;6.74e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GTACAGGAAAGGAGTCTGTTG	0.368000													9	77					4.68919e-08	5.03537e-08	0.008291	1	0
HRH4	59340	broad.mit.edu	37	18	22056724	22056724	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr18:22056724C>G	uc002kvi.2	+	3	471	c.371C>G	c.(370-372)ACT>AGT	p.T124S	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Intron	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	124	Cytoplasmic (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	TCTTATAGAACTCAACATACT	0.378000													12	95					0	0	0.010729	0	0
GALNT1	2589	broad.mit.edu	37	18	33257583	33257583	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr18:33257583C>T	uc010dmu.2	+	4	396	c.343C>T	c.(343-345)CTT>TTT	p.L115F	GALNT1_uc002kyz.3_Missense_Mutation_p.L55F|GALNT1_uc002kzb.2_Missense_Mutation_p.L115F	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	115	Lumenal (Potential).|Catalytic subdomain A.				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						TCCAGATAATCTTCCTACAAC	0.388000													15	110					0	0	0.004007	0	0
ABCA7	10347	broad.mit.edu	37	19	1042063	1042063	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:1042063G>A	uc002lqw.3	+	5	534	c.303G>A	c.(301-303)CTG>CTA	p.L101L	ABCA7_uc010dsb.1_5'Flank|ABCA7_uc010dsa.2_Silent_p.L101L	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	101	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGTCCCCAGGGTCTCCCGGC	0.711000													3	11					0	0	0.009096	0	0
OR7G3	390883	broad.mit.edu	37	19	9237223	9237223	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:9237223A>T	uc010xkl.1	-	1	404	c.404T>A	c.(403-405)ATC>AAC	p.I135N		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGGTTCATGATGACATTGTA	0.488000													18	79					0	0	0.004990	0	0
ZNF30	90075	broad.mit.edu	37	19	35434793	35434793	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:35434793G>T	uc010edp.1	+	5	1301	c.923G>T	c.(922-924)AGA>ATA	p.R308I	ZNF30_uc002nxf.2_Missense_Mutation_p.R227I|ZNF30_uc010edq.1_Missense_Mutation_p.R309I|ZNF30_uc010edr.1_Missense_Mutation_p.R309I	NM_194325	NP_919306	P17039	ZNF30_HUMAN	zinc finger protein 30 isoform b	308	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_lung(56;8.38e-08)|Lung NSC(56;1.31e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)	GBM - Glioblastoma multiforme(1328;0.0265)		AAGCATCAGAGAATTCATACT	0.448000													33	64					1.36161e-19	1.57868e-19	0.004289	1	0
FFAR2	2867	broad.mit.edu	37	19	35940980	35940980	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:35940980C>T	uc002nzg.2	+	2	444	c.364C>T	c.(364-366)CGG>TGG	p.R122W	FFAR2_uc010eea.2_Missense_Mutation_p.R122W	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	122	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GCTCTCCCGCCGGCCTCTGTA	0.567000													4	61					0	0	0.009096	0	0
SPTBN4	57731	broad.mit.edu	37	19	41066266	41066266	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:41066266A>G	uc002ony.2	+	27	5958	c.5872A>G	c.(5872-5874)ATG>GTG	p.M1958V	SPTBN4_uc002onx.2_Missense_Mutation_p.M1958V|SPTBN4_uc002onz.2_Missense_Mutation_p.M1958V|SPTBN4_uc010egx.2_Missense_Mutation_p.M701V|SPTBN4_uc002ooa.2_Missense_Mutation_p.M634V	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1958	Spectrin 17.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GCTCTCCTGGATGGATGGCAT	0.667000													13	76					0	0	0.001855	0	0
SULT2B1	6820	broad.mit.edu	37	19	49094919	49094920	+	Nonsense_Mutation	DNP	CT	AA	AA			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:49094919_49094920CT>AA	uc002pjl.2	+	4	558_559	c.477_478CT>AA	c.(475-480)TACTCC>TAAACC	p.159_160YS>*T	SULT2B1_uc002pjm.2_Nonsense_Mutation_p.144_145YS>*T	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	159_160					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		TCTATCATTACTCCAAGATCGC	0.609000													3	24					0	0	0.004672	0	0
SCAF1	58506	broad.mit.edu	37	19	50156700	50156700	+	Silent	SNP	A	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:50156700A>C	uc002poq.2	+	7	3178	c.3054A>C	c.(3052-3054)CGA>CGC	p.R1018R		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1018	Glu-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		CTGGGGTCCGAGGTGGGGCgg	0.498000													182	6					0	0	0.014410	0	0
C19orf48	84798	broad.mit.edu	37	19	51301536	51301536	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:51301536G>A	uc002ptf.2	-	5	1092	c.170C>T	c.(169-171)CCA>CTA	p.P57L	C19orf48_uc002pte.2_RNA|C19orf48_uc002ptg.2_Missense_Mutation_p.P57L	NM_199249	NP_954857	Q6RUI8	CS048_HUMAN	multidrug resistance-related protein	57										ovary(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00531)|GBM - Glioblastoma multiforme(134;0.0145)		GGAAGCCCTTGGTAGCCCACT	0.647000													25	140					0	0	0.003954	0	0
C19orf48	84798	broad.mit.edu	37	19	51301602	51301602	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:51301602G>A	uc002ptf.2	-	5	1026	c.104C>T	c.(103-105)CCA>CTA	p.P35L	C19orf48_uc002pte.2_RNA|C19orf48_uc002ptg.2_Missense_Mutation_p.P35L	NM_199249	NP_954857	Q6RUI8	CS048_HUMAN	multidrug resistance-related protein	35										ovary(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00531)|GBM - Glioblastoma multiforme(134;0.0145)		GCACTGGGTTGGGTCCCAGCA	0.642000													25	134					0	0	0.003954	0	0
ZNF28	7576	broad.mit.edu	37	19	53311306	53311306	+	Silent	SNP	A	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:53311306A>T	uc002qad.2	-	3	216	c.96T>A	c.(94-96)CTT>CTA	p.L32L	ZNF28_uc002qac.2_5'UTR|ZNF28_uc010eqe.2_Intron	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		CATCCCTGTAAAGAGTCCTCT	0.473000													8	185					0	0	0.008361	0	0
PRPF31	26121	broad.mit.edu	37	19	54629912	54629912	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:54629912C>T	uc002qdh.2	+	9	1261	c.865C>T	c.(865-867)CGG>TGG	p.R289W	PRPF31_uc010yek.1_Missense_Mutation_p.R289W	NM_015629	NP_056444	Q8WWY3	PRP31_HUMAN	pre-mRNA processing factor 31 homolog	289	Nop.				assembly of spliceosomal tri-snRNP	Cajal body|MLL1 complex|nuclear speck|U4 snRNP|U4/U6 x U5 tri-snRNP complex|U4atac snRNP	RNA binding|snRNP binding			ovary(1)	1	all_cancers(19;0.00681)|all_epithelial(19;0.00362)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GGATCTGCGGCGGAAAGCGGC	0.617000													5	20					0	0	0.001168	0	0
PTPRH	5794	broad.mit.edu	37	19	55710148	55710148	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:55710148G>A	uc002qjq.2	-	8	1626	c.1553C>T	c.(1552-1554)ACT>ATT	p.T518I	PTPRH_uc010esv.2_Missense_Mutation_p.T340I|PTPRH_uc002qjs.2_Missense_Mutation_p.T525I	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	518	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CCTGGGGTCAGTCATGCCTTC	0.592000													10	30					0	0	0.008291	0	0
CCT7	10574	broad.mit.edu	37	2	73466844	73466844	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr2:73466844G>A	uc002siz.2	+	2	182	c.80G>A	c.(79-81)AGT>AAT	p.S27N	CCT7_uc002sja.2_Intron|CCT7_uc010yrf.1_Translation_Start_Site|CCT7_uc010feu.2_Missense_Mutation_p.S27N|CCT7_uc010yrg.1_Translation_Start_Site|CCT7_uc010yrh.1_Translation_Start_Site|CCT7_uc010yri.1_Intron	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	27					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						AGTAACATCAGTGCCTGCCAG	0.488000													7	23					0	0	0.001984	0	0
EDAR	10913	broad.mit.edu	37	2	109546658	109546658	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr2:109546658C>T	uc002teq.3	-	3	523	c.92G>A	c.(91-93)TGC>TAC	p.C31Y	EDAR_uc010fjn.2_Missense_Mutation_p.C31Y|EDAR_uc010yws.1_Missense_Mutation_p.C31Y	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	31	TNFR-Cys 1.|Extracellular (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GTTCTCACCGCAGTTTGAGTA	0.602000													5	34					0	0	0.000602	0	0
CCDC148	130940	broad.mit.edu	37	2	159201746	159201746	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr2:159201746G>C	uc002tzq.2	-	3	495	c.232C>G	c.(232-234)CAG>GAG	p.Q78E	CCDC148_uc002tzr.2_Intron|CCDC148_uc010foh.2_Intron|CCDC148_uc010foi.1_Missense_Mutation_p.Q25E|CCDC148_uc010foj.1_Intron|CCDC148_uc010fok.1_Intron|CCDC148_uc002tzs.1_Missense_Mutation_p.Q78E	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	78										ovary(2)	2						TTCAGCCTCTGGTATTCCTGC	0.383000													24	125					0	0	0.005443	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								22	43					0	0	0.012319	0	0
SLC4A3	6508	broad.mit.edu	37	2	220497018	220497018	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr2:220497018G>A	uc002vmp.3	+	8	1264	c.995G>A	c.(994-996)CGC>CAC	p.R332H	SLC4A3_uc002vmo.3_Missense_Mutation_p.R359H|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	332	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATGCTGGACCGCAGCCAGGAG	0.667000													4	34					0	0	0.001168	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													7	111					0	0	0.008291	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852569	31852569	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr21:31852569T>C	uc011acx.1	-	1	68	c.68A>G	c.(67-69)TAT>TGT	p.Y23C		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	23	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						GCCATAGCCATAGCCCAGGCC	0.572000													7	140					0	0	0.001984	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42851169	42851169	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr21:42851169C>T	uc002yzj.2	-	7	747	c.613G>A	c.(613-615)GGA>AGA	p.G205R	TMPRSS2_uc010gor.2_Missense_Mutation_p.G242R|TMPRSS2_uc010gos.1_Missense_Mutation_p.G205R	NM_005656	NP_005647	O15393	TMPS2_HUMAN	transmembrane protease, serine 2 isoform 2	205	Extracellular (Potential).|SRCR.				proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ERG(2499)|TMPRSS2/ETV1(24)	prostate(2523)|central_nervous_system(1)	2524		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				CTGGTGGATCCGCTGTCATCC	0.348000			T	ERG|ETV1|ETV4|ETV5	prostate 								4	66					0	0	0.009096	0	0
ZNF295	49854	broad.mit.edu	37	21	43411516	43411516	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr21:43411516G>A	uc002zab.3	-	3	2903	c.2689C>T	c.(2689-2691)CCC>TCC	p.P897S	ZNF295_uc002yzz.3_Missense_Mutation_p.P696S|ZNF295_uc002yzy.3_Missense_Mutation_p.P897S|ZNF295_uc002zaa.3_Missense_Mutation_p.P897S	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	897					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTTCTTTGGGGGCTGTGCTG	0.562000													5	68					0	0	0.000602	0	0
BCL2L13	23786	broad.mit.edu	37	22	18185020	18185020	+	Silent	SNP	T	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr22:18185020T>G	uc002zmw.2	+	6	686	c.468T>G	c.(466-468)CCT>CCG	p.P156P	BCL2L13_uc002zmu.2_Silent_p.P156P|BCL2L13_uc002zmv.2_Silent_p.P156P|BCL2L13_uc002zmx.2_5'UTR|BCL2L13_uc002zmy.2_Intron|BCL2L13_uc010gqy.2_5'UTR|BCL2L13_uc011agk.1_Silent_p.P32P|BCL2L13_uc010gqz.2_Intron|BCL2L13_uc002zmz.2_5'UTR	NM_015367	NP_056182	Q9BXK5	B2L13_HUMAN	BCL2-like 13 (apoptosis facilitator)	156	BH1.				induction of apoptosis	integral to membrane|mitochondrial membrane|nucleus	caspase activator activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4		all_epithelial(15;0.123)		Lung(27;0.199)		TTTTGGTGCCTCTGGTTTTGC	0.363000													11	90					0	0	0.013537	0	0
CYTH4	27128	broad.mit.edu	37	22	37696974	37696974	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr22:37696974C>T	uc003arf.2	+	7	577	c.461C>T	c.(460-462)CCG>CTG	p.P154L	CYTH4_uc003are.2_Missense_Mutation_p.P154L|CYTH4_uc011amw.1_Missense_Mutation_p.P97L|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	154	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TTCCGGCTGCCGGGCGAGGCC	0.667000													3	18					0	0	0.004672	0	0
CPT1B	1375	broad.mit.edu	37	22	51011381	51011381	+	Silent	SNP	G	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr22:51011381G>C	uc003bmk.3	-	10	1437	c.1275C>G	c.(1273-1275)TCC>TCG	p.S425S	CPT1B_uc003bml.2_Silent_p.S425S|CPT1B_uc003bmm.2_Silent_p.S425S|CPT1B_uc003bmo.2_Silent_p.S425S|CPT1B_uc011asa.1_Silent_p.S391S|CPT1B_uc003bmn.2_Silent_p.S425S|CPT1B_uc011asb.1_Intron|CHKB-CPT1B_uc003bmp.2_Silent_p.S222S	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	425	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		CATAGGAGTAGGATTCCTCAT	0.602000													5	66					0	0	0.001168	0	0
BRPF1	7862	broad.mit.edu	37	3	9781283	9781283	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:9781283C>T	uc003bse.2	+	3	1599	c.1200C>T	c.(1198-1200)TGC>TGT	p.C400C	BRPF1_uc003bsf.2_Silent_p.C400C|BRPF1_uc003bsg.2_Silent_p.C400C|BRPF1_uc011ati.1_Silent_p.C400C	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	400	C4-type.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GCATCCAGTGCCACAAGGCCA	0.572000													20	59					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	3	12299660	12299660	+	RNA	SNP	G	A	A	rs35877199	by1000genomes	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:12299660G>A	uc003bwp.1	-	1		c.293C>T				NR_003112				NR_003112																		TCTCCGAAATGTCCACACGAA	0.522000													4	56					0	0	0.009096	0	0
SACM1L	22908	broad.mit.edu	37	3	45744968	45744968	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:45744968A>G	uc003cos.2	+	2	275	c.71A>G	c.(70-72)GAT>GGT	p.D24G	SACM1L_uc011bag.1_5'UTR|SACM1L_uc011bah.1_Missense_Mutation_p.M1V	NM_014016	NP_054735	Q9NTJ5	SAC1_HUMAN	suppressor of actin 1	24						Golgi apparatus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0102)|KIRC - Kidney renal clear cell carcinoma(197;0.0234)|Kidney(197;0.0277)		GAAGCTTGTGATGATGGAGCA	0.358000													18	52					0	0	0.008871	0	0
C3orf63	23272	broad.mit.edu	37	3	56667651	56667651	+	Silent	SNP	C	T	T	rs61758809	byFrequency	TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:56667651C>T	uc003did.3	-	17	3086	c.2985G>A	c.(2983-2985)GAG>GAA	p.E995E	C3orf63_uc003dib.3_Silent_p.E114E|C3orf63_uc003dic.3_Silent_p.E619E|C3orf63_uc003die.3_Silent_p.E1056E	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	1056										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		GTTTCATCTTCTCTTGTGTTG	0.358000													5	67					0	0	0.000602	0	0
PARL	55486	broad.mit.edu	37	3	183580581	183580581	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:183580581C>T	uc003fmd.2	-	4	530	c.471G>A	c.(469-471)AAG>AAA	p.K157K	PARL_uc003fme.2_Silent_p.K157K	NM_018622	NP_061092	Q9H300	PARL_HUMAN	presenilin associated, rhomboid-like isoform 1	157	Mitochondrial intermembrane (Potential).				proteolysis	integral to membrane|mitochondrial inner membrane|nucleus	serine-type endopeptidase activity				0	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.21e-41)|Epithelial(37;1.34e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TATTCCACCACTTGTTAATCT	0.393000													4	46					0	0	0.000602	0	0
LOC220729	220729	broad.mit.edu	37	3	197348739	197348739	+	RNA	SNP	G	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr3:197348739G>C	uc011bug.1	-	4		c.352C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						TAATTTTCTAGCTGTGAAAGA	0.398000													5	71					0	0	0.001168	0	0
GAK	2580	broad.mit.edu	37	4	861174	861174	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:861174C>G	uc003gbm.3	-	21	2641	c.2442G>C	c.(2440-2442)GAG>GAC	p.E814D	GAK_uc003gbn.3_Missense_Mutation_p.E735D|GAK_uc010ibk.1_Missense_Mutation_p.E708D|GAK_uc010ibi.2_5'UTR|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.E678D	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	814					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		CAGACTCGCTCTCCTTGGAAG	0.587000													18	90					0	0	0.006122	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6325273	6325273	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:6325273C>T	uc003gjc.2	-	9	1470	c.1100G>A	c.(1099-1101)CGG>CAG	p.R367Q	PPP2R2C_uc003gjb.2_Missense_Mutation_p.R350Q|PPP2R2C_uc011bwd.1_Missense_Mutation_p.R360Q|PPP2R2C_uc011bwe.1_Missense_Mutation_p.R360Q|PPP2R2C_uc003gja.2_Missense_Mutation_p.R367Q	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	367	WD 6.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						CTTGGTGTTCCGATCGAACAT	0.642000													6	42					0	0	0.001168	0	0
ARAP2	116984	broad.mit.edu	37	4	36126576	36126576	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:36126576G>T	uc003gsq.1	-	22	3992	c.3654C>A	c.(3652-3654)GAC>GAA	p.D1218E		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1218	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTCTTTCCTTGTCATCTTGCG	0.368000													11	64					1.58986e-06	1.69585e-06	0.008291	1	0
TLR10	81793	broad.mit.edu	37	4	38776590	38776590	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:38776590G>A	uc003gti.2	-	2	1001	c.622C>T	c.(622-624)CGT>TGT	p.R208C	TLR10_uc003gtj.2_Missense_Mutation_p.R208C|TLR10_uc003gtk.2_Missense_Mutation_p.R208C	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	208	Extracellular (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ATTCCATCACGCAAAAGAACC	0.338000													8	80					0	0	0.003080	0	0
TBCK	93627	broad.mit.edu	37	4	106967769	106967769	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:106967769T>C	uc010ilv.2	-	26	3005	c.2640A>G	c.(2638-2640)ATA>ATG	p.I880M	TBCK_uc003hyb.2_Missense_Mutation_p.I623M|TBCK_uc003hye.2_Missense_Mutation_p.I841M|TBCK_uc003hyc.2_Missense_Mutation_p.I817M|TBCK_uc003hyd.2_Missense_Mutation_p.I708M|TBCK_uc003hyf.2_Missense_Mutation_p.I880M	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	880	Rhodanese.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						CTGTTGGCTTTATTTTATTAA	0.408000													12	23					0	0	0.013537	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504381	151504381	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr4:151504381A>G	uc003ilw.2	+	1	1305	c.200A>G	c.(199-201)GAG>GGG	p.E67G	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	67					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		GAGGGGCTCGAGGTCATTTCG	0.602000													3	33					0	0	0.009096	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1330403	1330403	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:1330403C>T	uc003jch.2	-	9	1118	c.1072G>A	c.(1072-1074)GCC>ACC	p.A358T	CLPTM1L_uc003jcg.2_Intron	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	358	Helical; (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		ACCTCAATGGCGGCTCCAACA	0.622000													10	77					0	0	0.001855	0	0
CDH12	1010	broad.mit.edu	37	5	21817163	21817163	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:21817163A>C	uc010iuc.2	-	6	1351	c.893T>G	c.(892-894)TTT>TGT	p.F298C	CDH12_uc011cno.1_Missense_Mutation_p.F258C|CDH12_uc003jgk.2_Missense_Mutation_p.F298C	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	298	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						ATTTTGTCCAAAATCAGGATC	0.388000										HNSCC(59;0.17)			23	88					0	0	0.014323	0	0
APC	324	broad.mit.edu	37	5	112176714	112176714	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:112176714A>C	uc010jby.2	+	16	5803	c.5423A>C	c.(5422-5424)AAC>ACC	p.N1808T	APC_uc011cvt.1_Missense_Mutation_p.N1790T|APC_uc003kpz.3_Missense_Mutation_p.N1808T|APC_uc003kpy.3_Missense_Mutation_p.N1808T|APC_uc010jbz.2_Missense_Mutation_p.N1525T|APC_uc010jca.2_Missense_Mutation_p.N1108T	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1808	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		TTCTCAGACAACAAAGATTCA	0.313000		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			7	36					0	0	0.003080	0	0
FBN2	2201	broad.mit.edu	37	5	127730892	127730892	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:127730892T>G	uc003kuu.2	-	9	1593	c.1154A>C	c.(1153-1155)AAA>ACA	p.K385T	FBN2_uc003kuv.2_Missense_Mutation_p.K352T	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	385	TB 2.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCACTGCATTTTCGTCATTCT	0.547000													5	24					0	0	0.001168	0	0
SQSTM1	8878	broad.mit.edu	37	5	179247941	179247941	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:179247941C>T	uc003mkw.3	+	1	100	c.5C>T	c.(4-6)GCG>GTG	p.A2V	SQSTM1_uc011dgr.1_Intron|SQSTM1_uc011dgs.1_Intron|SQSTM1_uc003mkv.3_Missense_Mutation_p.A2V|SQSTM1_uc003mkx.2_5'Flank	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	2	Interaction with LCK.				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTCGCTATGGCGTCGCTCACC	0.716000									Paget_Disease_of_Bone				3	6					0	0	0.004672	0	0
FLT4	2324	broad.mit.edu	37	5	180043382	180043382	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr5:180043382G>A	uc003mma.3	-	23	3283	c.3204C>T	c.(3202-3204)TAC>TAT	p.Y1068Y	FLT4_uc003mlz.3_Silent_p.Y1068Y	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1068	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CCTTGCGGACGTAGTCGGGGT	0.597000									Congenital_Hereditary_Lymphedema				12	46					0	0	0.013537	0	0
LPA	4018	broad.mit.edu	37	6	161027642	161027642	+	Silent	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr6:161027642A>G	uc003qtl.2	-	18	2772	c.2652T>C	c.(2650-2652)CCT>CCC	p.P884P		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3392	Kringle 30.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TATAACAATAAGGGGCTGCCA	0.522000													83	127					0	0	0.014410	0	0
CYTH3	9265	broad.mit.edu	37	7	6217518	6217518	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr7:6217518C>T	uc003spt.2	-	5	408	c.304G>A	c.(304-306)GCC>ACC	p.A102T		NM_004227	NP_004218	O43739	CYH3_HUMAN	cytohesin 3	102	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|membrane fraction|plasma membrane	1-phosphatidylinositol binding|ARF guanyl-nucleotide exchange factor activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity				0						AGGAACTGGGCGACGTCTTCT	0.463000													16	74					0	0	0.004007	0	0
MEOX2	4223	broad.mit.edu	37	7	15652021	15652021	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr7:15652021C>T	uc003stc.2	-	3	1187	c.906G>A	c.(904-906)GCG>GCA	p.A302A	MEOX2_uc011jxw.1_Silent_p.A302A	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	302					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		ATCATAAGTGCGCATGCTCTG	0.478000													9	66					0	0	0.006214	0	0
ST7	7982	broad.mit.edu	37	7	116869933	116869933	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr7:116869933A>C	uc011knn.1	+	14	1465	c.1460A>C	c.(1459-1461)CAC>CCC	p.H487P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		TCCTCCACTCACCTCACCCGC	0.522000													21	50					0	0	0.010818	0	0
TTC26	79989	broad.mit.edu	37	7	138863316	138863316	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr7:138863316C>G	uc003vus.2	+	14	1328	c.1214C>G	c.(1213-1215)GCA>GGA	p.A405G	TTC26_uc011kqn.1_Missense_Mutation_p.A405G|TTC26_uc011kqo.1_Missense_Mutation_p.A374G|TTC26_uc011kqp.1_Missense_Mutation_p.A300G|TTC26_uc003vut.2_Missense_Mutation_p.A265G|TTC26_uc011kqq.1_Missense_Mutation_p.A274G	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	405							binding			ovary(1)	1						GCCAAAGCTGCAACAGGCAAT	0.368000													8	57					0	0	0.006214	0	0
SSPO	23145	broad.mit.edu	37	7	149474867	149474867	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr7:149474867G>A	uc010lpk.2	+	5	666	c.666G>A	c.(664-666)GCG>GCA	p.A222A	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	222	VWFD 1.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACCTGCTGGCGGGTGCTGCGG	0.682000													5	12					0	0	0.001168	0	0
MTMR7	9108	broad.mit.edu	37	8	17218649	17218649	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr8:17218649T>A	uc003wxm.2	-	4	684	c.445A>T	c.(445-447)AGC>TGC	p.S149C		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	149	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		TTCACATCGCTGAGCTGCCAG	0.473000													30	50					0	0	0.008361	0	0
ADAM2	2515	broad.mit.edu	37	8	39695695	39695695	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr8:39695695C>T	uc003xnj.2	-	1	85	c.10G>A	c.(10-12)GTC>ATC	p.V4I	ADAM2_uc003xnk.2_Missense_Mutation_p.V4I|ADAM2_uc011lck.1_Missense_Mutation_p.V4I|ADAM2_uc003xnl.2_Missense_Mutation_p.V4I	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	4					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AGAAACAAGACGCGCCACATG	0.612000													5	31					0	0	0.000602	0	0
OC90	729330	broad.mit.edu	37	8	133044199	133044199	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr8:133044199C>T	uc003ytg.2	-	11	960	c.960G>A	c.(958-960)CCG>CCA	p.P320P	OC90_uc011lix.1_Silent_p.P320P	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	336	Phospholipase A2-like 2.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			CAAATTCCTCCGGGCACCGGG	0.547000													13	45					0	0	0.013537	0	0
MPDZ	8777	broad.mit.edu	37	9	13138059	13138059	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:13138059C>T	uc010mia.1	-	28	4154	c.4097G>A	c.(4096-4098)GGG>GAG	p.G1366E	MPDZ_uc003zky.3_5'Flank|MPDZ_uc010mib.2_Missense_Mutation_p.G71E|MPDZ_uc010mhx.2_Missense_Mutation_p.G188E|MPDZ_uc011lmm.1_Missense_Mutation_p.G225E|MPDZ_uc003zkz.3_Missense_Mutation_p.G59E|MPDZ_uc010mhy.2_Missense_Mutation_p.G1366E|MPDZ_uc010mhz.2_Missense_Mutation_p.G1333E|MPDZ_uc011lmn.1_Missense_Mutation_p.G1333E|MPDZ_uc003zlb.3_Missense_Mutation_p.G1366E	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1366	PDZ 8.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GTCTTTGTTCCCAGCAAGACT	0.448000													12	65					0	0	0.013537	0	0
MPDZ	8777	broad.mit.edu	37	9	13138080	13138080	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:13138080C>G	uc010mia.1	-	28	4133	c.4076G>C	c.(4075-4077)GGT>GCT	p.G1359A	MPDZ_uc003zky.3_5'Flank|MPDZ_uc010mib.2_Missense_Mutation_p.G64A|MPDZ_uc010mhx.2_Missense_Mutation_p.G181A|MPDZ_uc011lmm.1_Missense_Mutation_p.G218A|MPDZ_uc003zkz.3_Missense_Mutation_p.G52A|MPDZ_uc010mhy.2_Missense_Mutation_p.G1359A|MPDZ_uc010mhz.2_Missense_Mutation_p.G1326A|MPDZ_uc011lmn.1_Missense_Mutation_p.G1326A|MPDZ_uc003zlb.3_Missense_Mutation_p.G1359A	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1359	PDZ 8.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		TAGGCCCAAACCACTATGACC	0.438000													9	68					0	0	0.004482	0	0
IFNA5	3442	broad.mit.edu	37	9	21304957	21304957	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:21304957C>A	uc011lnh.1	-	1	299	c.299G>T	c.(298-300)TGG>TTG	p.W100L		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	100					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TGTCTCATCCCAAGTAGCAGA	0.483000													39	225					8.73648e-17	9.98455e-17	0.004289	1	0
TAF1L	138474	broad.mit.edu	37	9	32634394	32634394	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:32634394A>G	uc003zrg.1	-	1	1274	c.1184T>C	c.(1183-1185)GTG>GCG	p.V395A	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	395					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGATTTTATCACAGGTTCATG	0.458000													42	223					0	0	0.007835	0	0
NUP188	23511	broad.mit.edu	37	9	131745580	131745580	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:131745580C>T	uc004bws.1	+	18	1827	c.1805C>T	c.(1804-1806)ACA>ATA	p.T602I	NUP188_uc004bwu.2_5'Flank	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	602					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						AGGTTAACGACAGTGATCTCC	0.448000													19	136					0	0	0.007413	0	0
USP20	10868	broad.mit.edu	37	9	132631651	132631651	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr9:132631651G>T	uc004bys.2	+	13	1550	c.1339G>T	c.(1339-1341)GAC>TAC	p.D447Y	USP20_uc004byr.2_Missense_Mutation_p.D447Y|USP20_uc004byt.1_Missense_Mutation_p.D447Y	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	447					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CGTCATCTCAGACATCTTTGA	0.652000													45	134					3.05275e-18	3.51395e-18	0.013114	1	0
CRLF2	64109	broad.mit.edu	37	X	1321390	1321390	+	RNA	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:1321390G>A	uc004cpm.1	-	4		c.365C>T						Q9HC73	CRLF2_HUMAN	Homo sapiens mRNA for IL-XR, complete cds.							extracellular region|integral to membrane|plasma membrane	receptor activity			haematopoietic_and_lymphoid_tissue(7)	7		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CACGTGCTTCGGGGAACTGGG	0.542000			Mis|T	P2RY8|IGH@	B-ALL|Downs associated ALL								24	120					0	0	0.003954	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627466	21627466	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:21627466C>A	uc004czx.1	+	20	2459	c.2423C>A	c.(2422-2424)TCT>TAT	p.S808Y	CNKSR2_uc004czw.2_Missense_Mutation_p.S808Y|CNKSR2_uc011mjn.1_Missense_Mutation_p.S759Y|CNKSR2_uc011mjo.1_Missense_Mutation_p.S778Y|CNKSR2_uc004czy.2_Missense_Mutation_p.S400Y	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	808					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AGGCGGCAGTCTACCCTGCCA	0.547000													27	66					4.59853e-10	5.07424e-10	0.005443	1	0
PDK3	5165	broad.mit.edu	37	X	24545692	24545692	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:24545692A>T	uc004dbg.2	+	8	981	c.752A>T	c.(751-753)AAC>ATC	p.N251I	PDK3_uc004dbh.2_Missense_Mutation_p.N251I	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	251	ATP.|Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TTATTTTAGAACTCAATGAGA	0.363000													4	19					0	0	0.009096	0	0
FAM47B	170062	broad.mit.edu	37	X	34961870	34961870	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:34961870C>T	uc004ddi.1	+	1	940	c.922C>T	c.(922-924)CGC>TGC	p.R308C		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	308	Pro-rich.									ovary(3)|breast(1)	4						GTCCCATCTCCGCCCAGAGCC	0.632000													29	72					0	0	0.007291	0	0
XK	7504	broad.mit.edu	37	X	37553613	37553613	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:37553613G>A	uc004ddq.2	+	2	402	c.320G>A	c.(319-321)AGG>AAG	p.R107K		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	107	Extracellular (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				ACCAAGAAGAGGCAAATGCCA	0.468000													7	23					0	0	0.001984	0	0
AKAP4	8852	broad.mit.edu	37	X	49958081	49958081	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:49958081T>C	uc004dow.1	-	5	1407	c.1283A>G	c.(1282-1284)AAG>AGG	p.K428R	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.K250R|AKAP4_uc004dou.1_Missense_Mutation_p.K419R	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	428				KR -> IL (in Ref. 2; AAC79433).	cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					GACCAAGCGCTTCAGCATGGC	0.478000													36	101					0	0	0.006230	0	0
MED12	9968	broad.mit.edu	37	X	70345937	70345937	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:70345937C>A	uc004dyy.2	+	18	2673	c.2474C>A	c.(2473-2475)ACT>AAT	p.T825N	MED12_uc011mpq.1_Missense_Mutation_p.T825N|MED12_uc004dyz.2_Missense_Mutation_p.T825N|MED12_uc004dza.2_Missense_Mutation_p.T672N	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	825					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					GCCTTCCCCACTGCTGAAGAT	0.552000													19	94					9.7654e-05	0.000102122	0.007413	1	0
NKAP	79576	broad.mit.edu	37	X	119070601	119070601	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:119070601C>A	uc004esh.2	-	3	679	c.512G>T	c.(511-513)AGC>ATC	p.S171I	NKAP_uc004esg.2_Missense_Mutation_p.S58I	NM_024528	NP_078804	Q8N5F7	NKAP_HUMAN	NFKB activating protein	171					negative regulation of transcription, DNA-dependent|Notch signaling pathway|positive regulation of alpha-beta T cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|protein binding			ovary(2)	2						TGAAGTAGTGCTTTTCTTTGG	0.294000													15	48					3.52763e-06	3.73789e-06	0.004990	1	0
ODZ1	10178	broad.mit.edu	37	X	123525989	123525989	+	Silent	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:123525989A>G	uc004euj.2	-	27	5644	c.5580T>C	c.(5578-5580)AAT>AAC	p.N1860N	ODZ1_uc011muj.1_Silent_p.N1866N|ODZ1_uc010nqy.2_Silent_p.N1867N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1860	Extracellular (Potential).|YD 6.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCATTTTTTCATTCCACGTTC	0.393000													20	53					0	0	0.014323	0	0
DDX26B	203522	broad.mit.edu	37	X	134709030	134709030	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:134709030T>A	uc004eyw.3	+	13	2015	c.1652T>A	c.(1651-1653)GTT>GAT	p.V551D	DDX26B_uc004eyx.3_Missense_Mutation_p.V152D	NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	551											0	Acute lymphoblastic leukemia(192;6.56e-05)					AGTGTTCCAGTTGCACAAATG	0.413000													24	103					0	0	0.003954	0	0
GPR112	139378	broad.mit.edu	37	X	135430980	135430980	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:135430980G>C	uc004ezu.1	+	6	5406	c.5115G>C	c.(5113-5115)CAG>CAC	p.Q1705H	GPR112_uc010nsb.1_Missense_Mutation_p.Q1500H|GPR112_uc010nsc.1_Missense_Mutation_p.Q1472H	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1705	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CAACTCAACAGTCATCACAAG	0.458000													26	164					0	0	0.003954	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290652	141290652	+	Nonstop_Mutation	SNP	T	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:141290652T>A	uc004fbu.1	-	3	1470	c.1122A>T	c.(1120-1122)TGA>TGT	p.*374C		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	374						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATCCTAGACTTCACTCAGAAA	0.502000										HNSCC(46;0.14)			20	73					0	0	0.010504	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935721	151935721	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:151935721A>G	uc004fgp.2	-	3	655	c.446T>C	c.(445-447)GTG>GCG	p.V149A		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	149	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					GCTGAAGATCACAGGAAAGAA	0.517000													83	107					0	0	0.014410	0	0
OPN1LW	5956	broad.mit.edu	37	X	153416330	153416330	+	Silent	SNP	C	T	T			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:153416330C>T	uc004fjz.3	+	2	348	c.315C>T	c.(313-315)ATC>ATT	p.I105I		NM_020061	NP_064445	P04000	OPSR_HUMAN	opsin 1 (cone pigments), long-wave-sensitive	105	Helical; Name=2; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGACCGTCATCGCCAGCACTA	0.597000													25	98					0	0	0.003330	0	0
G6PD	2539	broad.mit.edu	37	X	153760890	153760890	+	Silent	SNP	G	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:153760890G>A	uc004fly.1	-	10	1292	c.1179C>T	c.(1177-1179)CGC>CGT	p.R393R	G6PD_uc004flx.1_Silent_p.R423R	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	393			R -> H (in Nashville/Anaheim; class I).		cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity	p.R393L(1)		ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGGGCTGCACGCGGATCACCA	0.612000													24	66					0	0	0.014323	0	0
TCHHL1	126637	broad.mit.edu	37	1	152060485	152060485	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr1:152060485delA	uc001ezo.1	-	2	200	c.135delT	c.(133-135)TTTfs	p.F45fs		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	45							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			AGCTCACCTGAAAAAAGTCCC	0.453													97	246	---	---	---	---					
ANKRD26	22852	broad.mit.edu	37	10	27322258	27322258	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr10:27322258delG	uc001ith.2	-	25	3872	c.3700delC	c.(3700-3702)CAAfs	p.Q1234fs	ANKRD26_uc001itg.2_Frame_Shift_Del_p.Q921fs|ANKRD26_uc009xku.1_Frame_Shift_Del_p.Q1235fs	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1234	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GACATAGATTGTTTTTTTAGG	0.313													12	75	---	---	---	---					
CHD2	1106	broad.mit.edu	37	15	93545433	93545434	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr15:93545433_93545434insA	uc002bsp.2	+	33	4739_4740	c.4164_4165insA	c.(4162-4167)ATGAAAfs	p.M1388fs	CHD2_uc002bso.1_Frame_Shift_Ins_p.M1388fs	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1388_1389					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			AAAGTCCAATgaaaaaaaaaca	0.158													7	152	---	---	---	---					
UBN1	29855	broad.mit.edu	37	16	4910691	4910693	+	In_Frame_Del	DEL	AGA	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr16:4910691_4910693delAGA	uc002cyb.2	+	7	1037_1039	c.698_700delAGA	c.(697-702)GAGAAG>GAG	p.K238del	UBN1_uc010uxw.1_In_Frame_Del_p.K238del|UBN1_uc002cyc.2_In_Frame_Del_p.K238del	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	238	Lys-rich.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GCCAGTAAGGAGAAGAAGAAGAA	0.453													7	314	---	---	---	---					
RBBP6	5930	broad.mit.edu	37	16	24581321	24581321	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr16:24581321delC	uc002dmh.2	+	17	4350	c.3310delC	c.(3310-3312)CCAfs	p.P1104fs	RBBP6_uc010vcb.1_Frame_Shift_Del_p.P971fs|RBBP6_uc002dmi.2_Frame_Shift_Del_p.P1070fs|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Frame_Shift_Del_p.P937fs	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1104	Interaction with RB1 (By similarity).				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AGAAACAAAACCAGTCAAAGA	0.368													20	30	---	---	---	---					
KLF1	10661	broad.mit.edu	37	19	12996674	12996674	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:12996674delC	uc002mvo.2	-	2	433	c.370delG	c.(370-372)GCTfs	p.A124fs		NM_006563	NP_006554	Q13351	KLF1_HUMAN	erythroid Kruppel-like factor	124	Pro-rich.				erythrocyte differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0		Hepatocellular(1079;0.137)		GBM - Glioblastoma multiforme(1328;0.00016)|Lung(535;0.171)|STAD - Stomach adenocarcinoma(1328;0.18)		AAAAGCCCAGCCACCAGCCCC	0.746													2	4	---	---	---	---					
NKPD1	284353	broad.mit.edu	37	19	45655769	45655771	+	In_Frame_Del	DEL	CTG	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chr19:45655769_45655771delCTG	uc010xxi.1	-	4	1924_1926	c.1924_1926delCAG	c.(1924-1926)CAGdel	p.Q642del		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		CAAAGTCCCCCTGCTGCTGCTGC	0.704													7	329	---	---	---	---					
LONRF3	79836	broad.mit.edu	37	X	118148199	118148199	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DU-7010-01A-11D-2024-08	TCGA-DU-7010-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4e22253-010a-405d-bc82-72650f53d116	377d128d-3e55-4b68-941c-52cde4be5eaf	g.chrX:118148199delG	uc004eqw.2	+	10	2035	c.2004delG	c.(2002-2004)ATGfs	p.M668fs	LONRF3_uc004eqx.2_Frame_Shift_Del_p.M627fs|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Frame_Shift_Del_p.M412fs	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	668	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CTGAGCTCATGGGATTACATA	0.438													59	245	---	---	---	---					
