Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GPBP1L1	60313	broad.mit.edu	37	1	46120875	46120875	+	Silent	SNP	T	C	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr1:46120875T>C	uc001coq.2	-	5	1538	c.177A>G	c.(175-177)CTA>CTG	p.L59L		NM_021639	NP_067652	Q9HC44	GPBL1_HUMAN	GC-rich promoter binding protein 1-like 1	59					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTGCAGTTCGTAGGGGACCAT	0.453000													13	57					0	0	0.119110	0	0
SOAT1	6646	broad.mit.edu	37	1	179320474	179320474	+	Silent	SNP	T	C	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr1:179320474T>C	uc001gml.2	+	15	1536	c.1473T>C	c.(1471-1473)AAT>AAC	p.N491N	SOAT1_uc010pni.1_Silent_p.N426N|SOAT1_uc001gmm.2_Silent_p.N433N|SOAT1_uc010pnj.1_Silent_p.N227N|SOAT1_uc010pnk.1_Silent_p.N426N	NM_003101	NP_003092	P35610	SOAT1_HUMAN	sterol O-acyltransferase 1	491					cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|cholesterol storage|macrophage derived foam cell differentiation|positive regulation of amyloid precursor protein biosynthetic process|very-low-density lipoprotein particle assembly	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			central_nervous_system(1)|skin(1)	2					Ezetimibe(DB00973)|Hesperetin(DB01094)	TCATTGTCAATGATAGTCGGA	0.299000													19	183					0	0	0.062417	0	0
TACR2	6865	broad.mit.edu	37	10	71164757	71164757	+	Missense_Mutation	SNP	G	A	A	rs149794645		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr10:71164757G>A	uc001jpn.2	-	5	1617	c.1022C>T	c.(1021-1023)ACG>ATG	p.T341M	TACR2_uc001jpm.2_Missense_Mutation_p.T129M	NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2	341	Cytoplasmic (Potential).				excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	GAGGGAGGTCGTGGGAGTCAG	0.627000													4	84					0	0	0.150653	0	0
CLRN3	119467	broad.mit.edu	37	10	129690850	129690850	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr10:129690850C>T	uc001lka.1	-	1	362	c.199G>A	c.(199-201)GGA>AGA	p.G67R		NM_152311	NP_689524	Q8NCR9	CLRN3_HUMAN	clarin 3	67						integral to membrane				skin(1)	1		all_epithelial(44;0.00168)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)|Colorectal(57;0.235)				TCTGCAAGTCCGTGACTCAAT	0.368000													4	78					0	0	0.150653	0	0
PSMC3	5702	broad.mit.edu	37	11	47444498	47444498	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr11:47444498C>T	uc001nfh.2	-	7	812	c.618G>A	c.(616-618)ATG>ATA	p.M206I	PSMC3_uc009ylr.1_Missense_Mutation_p.M164I	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	206					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CCTTGTGGTTCATTGGCAAGA	0.592000													18	214					0	0	0.049695	0	0
PCNXL3	399909	broad.mit.edu	37	11	65393163	65393163	+	Missense_Mutation	SNP	T	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr11:65393163T>G	uc001oey.2	+	19	3176	c.3176T>G	c.(3175-3177)ATC>AGC	p.I1059S	PCNXL3_uc009yqn.2_Missense_Mutation_p.I19S|PCNXL3_uc001oez.2_5'Flank	NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	1059	Helical; (Potential).					integral to membrane					0						TGTGTGGTGATCGCCGTGCTC	0.627000											OREG0021084	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	17					0	0	0.093190	0	0
GPR83	10888	broad.mit.edu	37	11	94113592	94113592	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr11:94113592C>A	uc001pet.2	-	4	1167	c.995G>T	c.(994-996)TGG>TTG	p.W332L		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	332	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CATGGCAAACCAGTGGAAGGC	0.517000													68	150					5.26073e-25	6.1062e-25	0.139131	1	0
KRT71	112802	broad.mit.edu	37	12	52946764	52946764	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr12:52946764C>T	uc001sao.2	-	1	168	c.98G>A	c.(97-99)CGG>CAG	p.R33Q		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	33	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		GCTCCCTGCCCGGAAGGAGGA	0.652000													19	150					0	0	0.043863	0	0
NAB2	4665	broad.mit.edu	37	12	57485446	57485446	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr12:57485446T>C	uc001smz.2	+	2	1000	c.622T>C	c.(622-624)TTC>CTC	p.F208L		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	208					cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTCGCCCCCCTTCTCCCCCCC	0.716000													6	13					0	0	0.047766	0	0
FGD6	55785	broad.mit.edu	37	12	95604123	95604123	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr12:95604123G>A	uc001tdp.3	-	2	1161	c.937C>T	c.(937-939)CCA>TCA	p.P313S	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	313					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TTGGGAGTTGGAAATTTTGGG	0.413000													12	143					0	0	0.080935	0	0
STAB2	55576	broad.mit.edu	37	12	104125353	104125353	+	Splice_Site	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr12:104125353G>A	uc001tjw.2	+	50	5410	c.5224_splice	c.e50-1	p.Q1742_splice	STAB2_uc009zug.2_Splice_Site	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor						angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TATCTTTGCAGCAAAATCTTA	0.338000													3	47					0	0	0.150653	0	0
POTEG	404785	broad.mit.edu	37	14	19553818	19553818	+	Silent	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr14:19553818C>T	uc001vuz.1	+	1	454	c.402C>T	c.(400-402)CAC>CAT	p.H134H	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	134										ovary(1)	1						CGAGGTACCACGTCCGTCGAG	0.587000													27	334					0	0	0.131918	0	0
PDE8A	5151	broad.mit.edu	37	15	85681058	85681058	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr15:85681058A>G	uc002blh.2	+	22	2603	c.2414A>G	c.(2413-2415)CAT>CGT	p.H805R	PDE8A_uc002bli.2_Missense_Mutation_p.H759R|PDE8A_uc010bnc.2_Missense_Mutation_p.H558R|PDE8A_uc010bnd.2_Missense_Mutation_p.H558R|PDE8A_uc002blj.2_Missense_Mutation_p.H425R|PDE8A_uc002blk.2_Missense_Mutation_p.H425R|PDE8A_uc002bll.2_Missense_Mutation_p.H157R	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	805	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TTAATGCAGCATCTTGACAAC	0.463000													10	37					0	0	0.058154	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962181	1962181	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr16:1962181C>T	uc002cnf.2	-	2	346	c.346G>A	c.(346-348)GGG>AGG	p.G116R		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	116											0						GTGATCTGCCCATCCAGGGTT	0.687000													6	12					0	0	0.021553	0	0
OR1A1	8383	broad.mit.edu	37	17	3119139	3119139	+	Silent	SNP	G	A	A	rs113780617		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr17:3119139G>A	uc010vrc.1	+	1	225	c.225G>A	c.(223-225)TCG>TCA	p.S75S		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTTCTCATCGGTAACCATCC	0.483000													20	179					0	0	0.049695	0	0
PLCD3	113026	broad.mit.edu	37	17	43194022	43194022	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr17:43194022G>T	uc002iib.2	-	8	1504	c.1390C>A	c.(1390-1392)CCC>ACC	p.P464T		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	464	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	AGCTCCTCGGGATTTGGGGAG	0.692000													29	34					1.61788e-16	1.84495e-16	0.163468	1	0
OR4D2	124538	broad.mit.edu	37	17	56247641	56247641	+	Missense_Mutation	SNP	G	A	A	rs149114670		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr17:56247641G>A	uc010wnp.1	+	1	625	c.625G>A	c.(625-627)GTC>ATC	p.V209I		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V209I(1)		ovary(1)|breast(1)	2						GCTGGATGTCGTCTGGTTCTT	0.527000													17	72					0	0	0.160694	0	0
Unknown	0	broad.mit.edu	37	17	76497778	76497778	+	RNA	SNP	T	C	C	rs671899	by1000genomes	TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr17:76497778T>C	uc002jvt.1	+	2		c.3237T>C								Homo sapiens cDNA FLJ45552 fis, clone BRTHA2038279.																		CTGAACCCGGTGTCCCCTTGC	0.627000													5	59					0	0	0.014758	0	0
SMARCA4	6597	broad.mit.edu	37	19	11144121	11144121	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr19:11144121C>G	uc002mqf.3	+	26	3986	c.3702C>G	c.(3700-3702)TTC>TTG	p.F1234L	SMARCA4_uc010dxp.2_Missense_Mutation_p.F1234L|SMARCA4_uc010dxo.2_Missense_Mutation_p.F1234L|SMARCA4_uc010dxq.2_Missense_Mutation_p.F1234L|SMARCA4_uc010dxr.2_Missense_Mutation_p.F1234L|SMARCA4_uc002mqj.3_Missense_Mutation_p.F1234L|SMARCA4_uc010dxs.2_Missense_Mutation_p.F1234L|SMARCA4_uc010dxt.1_Missense_Mutation_p.F454L|SMARCA4_uc002mqh.3_Missense_Mutation_p.F357L|SMARCA4_uc002mqi.1_Missense_Mutation_p.F437L	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1234	Helicase C-terminal.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity			lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CCGGCATGTTCGACCAGAAGT	0.637000			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				24	69					0	0	0.099896	0	0
ZNF91	7644	broad.mit.edu	37	19	23543197	23543197	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr19:23543197C>T	uc002nre.2	-	4	2697	c.2584G>A	c.(2584-2586)GCT>ACT	p.A862T	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Missense_Mutation_p.A830T	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	862	C2H2-type 26.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TGATTAAAAGCTTTGCCACAT	0.358000													5	38					0	0	0.021553	0	0
KRTCAP3	200634	broad.mit.edu	37	2	27666916	27666916	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:27666916G>A	uc002rks.2	+	6	733	c.716G>A	c.(715-717)TGG>TAG	p.W239*	KRTCAP3_uc010ylr.1_Nonsense_Mutation_p.W239*|KRTCAP3_uc002rkt.2_Nonsense_Mutation_p.W221*	NM_173853	NP_776252	Q53RY4	KCP3_HUMAN	keratinocyte associated protein 3	239						integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					CAGAGAAGTTGGGTTTAGGAC	0.483000													4	21					0	0	0.150653	0	0
SMYD1	150572	broad.mit.edu	37	2	88393054	88393054	+	Silent	SNP	C	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:88393054C>G	uc002ssr.2	+	5	680	c.678C>G	c.(676-678)TCC>TCG	p.S226S	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Intron	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	226	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						CAGTGAAATCCATGTTTCATA	0.493000													14	69					0	0	0.160694	0	0
ITPRIPL1	150771	broad.mit.edu	37	2	96993753	96993753	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:96993753C>T	uc002svx.2	+	3	1719	c.1384C>T	c.(1384-1386)CTC>TTC	p.L462F	ITPRIPL1_uc010yuk.1_Missense_Mutation_p.L454F|ITPRIPL1_uc002svy.2_Missense_Mutation_p.L470F|ITPRIPL1_uc010yul.1_Missense_Mutation_p.L454F	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	462	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						ACGGCTGCCCCTCACGGACTG	0.567000													17	83					0	0	0.146539	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								41	44					0	0	0.131918	0	0
CPS1	1373	broad.mit.edu	37	2	211515094	211515094	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:211515094G>A	uc002vee.3	+	28	3544	c.3412G>A	c.(3412-3414)GCT>ACT	p.A1138T	CPS1_uc010fur.2_Missense_Mutation_p.A1144T|CPS1_uc010fus.2_Missense_Mutation_p.A687T	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1138	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CAGTGGGTCTGCTATGAATGT	0.408000													8	59					0	0	0.038147	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279430	217279430	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:217279430G>A	uc002vgc.3	+	3	333	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.M1I|SMARCAL1_uc010fvg.2_Missense_Mutation_p.M1I	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	1					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CTGTGAAAATGTCCTTGCCTC	0.413000									Schimke_Immuno-Osseous_Dysplasia				10	55					0	0	0.058154	0	0
RUFY4	285180	broad.mit.edu	37	2	218954072	218954072	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr2:218954072C>T	uc002vgw.2	+	13	2925	c.1081C>T	c.(1081-1083)CGG>TGG	p.R361W	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.R361W	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	534	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		ATTTTCTCGGCGGTATCCATG	0.602000													6	28					0	0	0.021553	0	0
EDEM2	55741	broad.mit.edu	37	20	33722668	33722668	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr20:33722668G>A	uc002xbo.2	-	6	675	c.575C>T	c.(574-576)ACG>ATG	p.T192M	EDEM2_uc010zuv.1_Missense_Mutation_p.T151M|EDEM2_uc010zus.1_Translation_Start_Site|EDEM2_uc002xbq.2_Missense_Mutation_p.T155M|EDEM2_uc010zut.1_Missense_Mutation_p.T151M|EDEM2_uc002xbp.2_Missense_Mutation_p.T40M|EDEM2_uc002xbn.2_Missense_Mutation_p.T40M|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Intron	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	192					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			AATCCCTGCCGTACAGGTGAC	0.542000													8	58					0	0	0.058154	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39387537	39387537	+	Silent	SNP	C	T	T	rs144471703		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr22:39387537C>T	uc003awo.1	+	6	978	c.924C>T	c.(922-924)TTC>TTT	p.F308F	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Silent_p.F283F|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	308					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					TGCGCATCTTCGCTGCCCGCA	0.572000													35	194					0	0	0.183431	0	0
LOC100128023	100128023	broad.mit.edu	37	3	193711891	193711891	+	RNA	SNP	T	C	C	rs111993093	by1000genomes	TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr3:193711891T>C	uc011bss.1	-	1		c.137A>G				NR_027764				Homo sapiens developmental pluripotency associated 2 pseudogene (LOC100128023), non-coding RNA.												0						CTTGGTTCCATTTGTTCCATA	0.388000													3	44					0	0	0.014758	0	0
DAB2	1601	broad.mit.edu	37	5	39381673	39381673	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:39381673C>T	uc003jlx.2	-	11	1918	c.1387G>A	c.(1387-1389)GTC>ATC	p.V463I	DAB2_uc003jlw.2_Missense_Mutation_p.V442I	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	463					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GGTTCTGAGACGGGAGGAGCA	0.542000													21	98					0	0	0.069288	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786734	121786734	+	Missense_Mutation	SNP	G	A	A	rs146515227	by1000genomes	TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:121786734G>A	uc003ksw.1	+	10	2398	c.2192G>A	c.(2191-2193)CGC>CAC	p.R731H	SNCAIP_uc011cwl.1_Missense_Mutation_p.R289H|SNCAIP_uc003ksx.1_Missense_Mutation_p.R778H|SNCAIP_uc003ksy.1_Missense_Mutation_p.R365H|SNCAIP_uc003ksz.1_Missense_Mutation_p.R365H|SNCAIP_uc010jcu.2_Missense_Mutation_p.R327H|SNCAIP_uc011cwm.1_Missense_Mutation_p.R365H|SNCAIP_uc003kta.1_Missense_Mutation_p.R363H|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.R425H|SNCAIP_uc010jcx.1_Missense_Mutation_p.R671H|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.R247H	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	731					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		TCAGGGGGACGCAGGTTTCCT	0.542000													5	62					0	0	0.014758	0	0
IL9	3578	broad.mit.edu	37	5	135231431	135231431	+	Silent	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:135231431C>T	uc003lbb.1	-	1	86	c.75G>A	c.(73-75)GCG>GCA	p.A25A		NM_000590	NP_000581	P15248	IL9_HUMAN	interleukin 9 precursor	25					immune response|inflammatory response|positive regulation of cell proliferation|positive regulation of interleukin-5 biosynthetic process	extracellular space	cytokine activity|cytokine receptor binding|growth factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCAGGATCCCCGCCAAGGTTG	0.567000													6	80					0	0	0.021553	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801469	140801469	+	Silent	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:140801469C>T	uc003lkq.1	+	1	933	c.675C>T	c.(673-675)GGC>GGT	p.G225G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.G225G|PCDHGA11_uc003lkp.1_Silent_p.G225G	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	225	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCGAAAGGGCGCAGTTCCCA	0.527000													5	66					0	0	0.014758	0	0
RBM22	55696	broad.mit.edu	37	5	150073655	150073655	+	Silent	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:150073655C>T	uc003lst.2	-	8	1016	c.894G>A	c.(892-894)CTG>CTA	p.L298L		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	298	RRM.				protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTTCACATTCAGTCTGCGGC	0.398000													5	129					0	0	0.014758	0	0
CPEB4	80315	broad.mit.edu	37	5	173317440	173317440	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:173317440A>T	uc003mcs.3	+	1	2110	c.704A>T	c.(703-705)CAT>CTT	p.H235L	CPEB4_uc010jju.1_Missense_Mutation_p.H235L|CPEB4_uc010jjv.2_Missense_Mutation_p.H235L|CPEB4_uc011dfg.1_Missense_Mutation_p.H235L|CPEB4_uc003mct.3_5'Flank|CPEB4_uc003mcu.3_5'Flank	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	235	His-rich.						nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CACCACCCACATCACCCTCAT	0.537000													18	104					0	0	0.160694	0	0
RNF130	55819	broad.mit.edu	37	5	179393937	179393937	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:179393937C>A	uc003mll.1	-	7	1426	c.1019G>T	c.(1018-1020)AGA>ATA	p.R340I	RNF130_uc003mlm.1_Missense_Mutation_p.R340I	NM_018434	NP_060904	Q86XS8	GOLI_HUMAN	ring finger protein 130 precursor	340	Cytoplasmic (Potential).				apoptosis	cytoplasm|integral to membrane|nucleus	ubiquitin-protein ligase activity|zinc ion binding			lung(2)|ovary(1)	3	all_cancers(89;5.49e-05)|all_epithelial(37;1.94e-05)|Renal(175;0.000159)|Lung NSC(126;0.00118)|all_lung(126;0.00212)	all_cancers(40;0.0294)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGGGCTGATCTTCGGTTAAC	0.517000													5	91					3.59834e-05	3.77245e-05	0.021553	1	0
NKAPL	222698	broad.mit.edu	37	6	28228259	28228259	+	Silent	SNP	A	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr6:28228259A>G	uc003nkt.2	+	1	1162	c.1110A>G	c.(1108-1110)GCA>GCG	p.A370A	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	370										upper_aerodigestive_tract(1)|ovary(1)	2						GAGCTCTTGCATCCTTTAACC	0.443000													45	53					0	0	0.131918	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113517991	113517991	+	Silent	SNP	A	G	G			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr7:113517991A>G	uc010ljy.1	-	4	3187	c.3156T>C	c.(3154-3156)ACT>ACC	p.T1052T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1052					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CAGGAAGACTAGTAGAAGCAG	0.368000													99	124					0	0	0.139131	0	0
MYOM2	9172	broad.mit.edu	37	8	2021511	2021511	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr8:2021511G>T	uc003wpx.3	+	10	1189	c.1051G>T	c.(1051-1053)GGC>TGC	p.G351C	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	351	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GGACGACGAGGGCCTGTACAC	0.602000													12	44					4.3838e-07	4.74912e-07	0.105934	1	0
PRDM14	63978	broad.mit.edu	37	8	70978498	70978498	+	Silent	SNP	C	T	T			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr8:70978498C>T	uc003xym.2	-	5	1357	c.1155G>A	c.(1153-1155)CCG>CCA	p.P385P		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	385					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			GCTGCTTCCCCGGCTCTGTGA	0.537000													8	76					0	0	0.047766	0	0
VPS13B	157680	broad.mit.edu	37	8	100589785	100589785	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr8:100589785T>C	uc003yiv.2	+	33	5330	c.5219T>C	c.(5218-5220)GTG>GCG	p.V1740A	VPS13B_uc003yiw.2_Missense_Mutation_p.V1715A	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1740			Missing (in COH1).		protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTCCTAAGTGTGGCTCAAGTT	0.388000													10	87					0	0	0.069234	0	0
NOTCH1	4851	broad.mit.edu	37	9	139392000	139392000	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr9:139392000G>A	uc004chz.2	-	34	6191	c.6191C>T	c.(6190-6192)CCC>CTC	p.P2064L		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2064	ANK 5.|Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CAGAAACAGGGGTGTCTCCTC	0.677000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			3	20					0	0	0.150653	0	0
OTUD5	55593	broad.mit.edu	37	X	48791845	48791845	+	Silent	SNP	G	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chrX:48791845G>A	uc004dlu.2	-	5	1027	c.966C>T	c.(964-966)GAC>GAT	p.D322D	OTUD5_uc004dlt.3_Silent_p.D317D|OTUD5_uc004dlv.2_Silent_p.D317D|OTUD5_uc011mmp.1_Silent_p.D100D	NM_017602	NP_060072	Q96G74	OTUD5_HUMAN	OTU domain containing 5 isoform a	322	OTU.				negative regulation of type I interferon production		cysteine-type peptidase activity			pancreas(1)	1						GAATGGGTTCGTCCTCGTTTT	0.507000													13	120					0	0	0.105934	0	0
ESX1	80712	broad.mit.edu	37	X	103499230	103499230	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chrX:103499230C>A	uc004ely.2	-	2	169	c.111G>T	c.(109-111)ATG>ATT	p.M37I		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	37					negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTCCCCTTGCCATCAGCGAGG	0.602000													25	198					1.1804e-14	1.32286e-14	0.091800	1	0
SASH3	54440	broad.mit.edu	37	X	128914084	128914084	+	Missense_Mutation	SNP	G	A	A	rs140091268		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chrX:128914084G>A	uc011mun.1	+	1	193	c.11G>A	c.(10-12)CGC>CAC	p.R4H	SASH3_uc004euu.2_Missense_Mutation_p.R4H	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	4										ovary(2)|pancreas(1)	3						ATGCTGCGCCGCAAGCCCTCC	0.577000													10	24					0	0	0.080935	0	0
MIR509-1	574514	broad.mit.edu	37	X	146342130	146342130	+	RNA	SNP	C	A	A			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chrX:146342130C>A	hsa-mir-509-1|MI0003196	-			c.14C>A			MIR509-2_hsa-mir-509-2|MI0005530_5'Flank|MIR509-3_hsa-mir-509-3|MI0005717_5'Flank																	0						CAGTAGGGTACCACACACAGC	0.438000													27	165					4.4194e-11	4.86883e-11	0.173368	1	0
TCF12	6938	broad.mit.edu	37	15	57555366	57555369	+	Frame_Shift_Del	DEL	AAAG	-	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr15:57555366_57555369delAAAG	uc002aec.2	+	17	1851_1854	c.1567_1570delAAAG	c.(1567-1572)AAAGAAfs	p.K523fs	TCF12_uc010ugm.1_Frame_Shift_Del_p.K575fs|TCF12_uc010ugn.1_Frame_Shift_Del_p.K543fs|TCF12_uc002aea.2_Frame_Shift_Del_p.K547fs|TCF12_uc010bfs.2_Intron|TCF12_uc002aeb.2_Frame_Shift_Del_p.K547fs|TCF12_uc002aed.2_Frame_Shift_Del_p.K523fs|TCF12_uc002aee.2_Frame_Shift_Del_p.K353fs|TCF12_uc010bft.2_Frame_Shift_Del_p.K377fs|TCF12_uc010ugo.1_Frame_Shift_Del_p.K287fs|TCF12_uc010ugp.1_Frame_Shift_Del_p.K181fs|TCF12_uc010ugq.1_Frame_Shift_Del_p.K157fs|TCF12_uc010ugr.1_Frame_Shift_Del_p.K136fs	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	523_524					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		GACTGAAAACAAAGAAAAGGATGA	0.382			T	TEC	extraskeletal myxoid chondrosarcoma								22	28	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													8	250	---	---	---	---					
CIC	23152	broad.mit.edu	37	19	42791372	42791373	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr19:42791372_42791373delAG	uc002otf.1	+	3	472_473	c.432_433delAG	c.(430-435)ACAGAGfs	p.T144fs		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	144_145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				ACAGTGAGACAGAGAGTGACCA	0.663			T	DUX4	soft tissue sarcoma								19	8	---	---	---	---					
SCHIP1	29970	broad.mit.edu	37	3	159482272	159482274	+	In_Frame_Del	DEL	GCA	-	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr3:159482272_159482274delGCA	uc003fcs.1	+	2	170_172	c.104_106delGCA	c.(103-108)GGCAGC>GGC	p.S41del	SCHIP1_uc003fcq.1_In_Frame_Del_p.S117del|SCHIP1_uc003fcr.1_In_Frame_Del_p.S30del|SCHIP1_uc003fct.1_In_Frame_Del_p.S41del|SCHIP1_uc010hvz.1_In_Frame_Del_p.S14del	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	41	Ser-rich.					cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			AGTGACGCCGgcagcagcagcag	0.567													3	5	---	---	---	---					
RNF180	285671	broad.mit.edu	37	5	63509839	63509840	+	Frame_Shift_Del	DEL	AT	-	-	rs146938584	byFrequency	TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr5:63509839_63509840delAT	uc003jti.2	+	4	796_797	c.686_687delAT	c.(685-687)CATfs	p.H229fs	RNF180_uc003jth.3_Frame_Shift_Del_p.H229fs|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	229	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		AGAAAATCACATAGTTTGGATC	0.386													19	115	---	---	---	---					
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	Frame_Shift_Del	DEL	AGAGCTCC	-	-			TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr7:74300557_74300564delAGAGCTCC	uc003ubj.3	-	5	625_632	c.243_250delGGAGCTCT	c.(241-252)CTGGAGCTCTTCfs	p.L81fs	STAG3L2_uc011kfj.1_RNA	NM_001025202	NP_001020373	P0CL84	ST3L2_HUMAN	STAG3-like	81_84	SCD.					nucleus	binding				0						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													6	7	---	---	---	---					
MRPL15	29088	broad.mit.edu	37	8	55049886	55049889	+	Frame_Shift_Del	DEL	GGTC	-	-	rs149600755		TCGA-DU-7018-01A-11D-2024-08	TCGA-DU-7018-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	29c55a80-cd55-4297-b433-00d0e2b1e08d	453998d9-d9f9-479d-86c0-d889a58b836d	g.chr8:55049886_55049889delGGTC	uc003xsa.2	+	3	385_388	c.322_325delGGTC	c.(322-327)GGTCGTfs	p.G108fs		NM_014175	NP_054894	Q9P015	RM15_HUMAN	mitochondrial ribosomal protein L15 precursor	108_109					translation	large ribosomal subunit|mitochondrion	structural constituent of ribosome				0		Lung NSC(129;0.109)|all_epithelial(80;0.134)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;4.3e-07)|Epithelial(17;5.79e-05)|all cancers(17;0.000458)			TATTGATTTGGGTCGTGTTGATCC	0.426													28	60	---	---	---	---					
