Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CYP4Z2P	163720	broad.mit.edu	37	1	47333730	47333730	+	RNA	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:47333730G>A	uc001cqo.1	-	8		c.997C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						AGCAGTAGTTGTGGTGTCATG	0.438000													17	14					0	0	0.008871	0	0
C1orf173	127254	broad.mit.edu	37	1	75038852	75038852	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:75038852C>A	uc001dgg.2	-	14	2761	c.2542G>T	c.(2542-2544)GTC>TTC	p.V848F		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	848	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGCCTTCTGACCCCTTCTGCT	0.532000													23	27					1.50538e-07	1.68603e-07	0.006320	1	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													5	33					0	0	0.021553	0	0
NUP210L	91181	broad.mit.edu	37	1	154062058	154062058	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:154062058G>A	uc001fdw.2	-	16	2272	c.2200C>T	c.(2200-2202)CGA>TGA	p.R734*	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Nonsense_Mutation_p.R734*	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	734						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TTTCCAATTCGGAATGTGAGA	0.423000													29	53					0	0	0.010818	0	0
FCRLA	84824	broad.mit.edu	37	1	161681737	161681737	+	Silent	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:161681737G>A	uc001gbe.2	+	5	824	c.582G>A	c.(580-582)GCG>GCA	p.A194A	FCRLA_uc001gbd.2_Silent_p.A188A|FCRLA_uc001gbf.2_Silent_p.A99A|FCRLA_uc001gbg.2_Silent_p.A48A|FCRLA_uc009wuo.2_Silent_p.A54A|FCRLA_uc009wup.2_Intron|FCRLA_uc009wuq.2_Intron	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	171	Ig-like C2-type 2.				cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			TGTTTCCAGCGCCAATTCTCA	0.527000													6	293					0	0	0.021553	0	0
CACNA1E	777	broad.mit.edu	37	1	181549908	181549908	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:181549908A>G	uc001gow.2	+	6	1112	c.947A>G	c.(946-948)TAC>TGC	p.Y316C	CACNA1E_uc009wxr.2_Missense_Mutation_p.Y223C|CACNA1E_uc009wxs.2_Missense_Mutation_p.Y223C	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	316	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACTGTGCTGTACAATGTGAGT	0.552000													3	36					0	0	0.004672	0	0
OR4D10	390197	broad.mit.edu	37	11	59245678	59245678	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr11:59245678C>T	uc001nnz.1	+	1	776	c.776C>T	c.(775-777)GCC>GTC	p.A259V		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	259	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TATGTCTATGCCCGGCCCTTC	0.562000													14	294					0	0	0.010504	0	0
VEGFB	7423	broad.mit.edu	37	11	64005040	64005040	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr11:64005040A>C	uc001nyw.2	+	6	599	c.559A>C	c.(559-561)ACC>CCC	p.T187P	VEGFB_uc001nyx.2_Missense_Mutation_p.D153A	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	187					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						CAGCGCCCTGACCCCCGGACC	0.706000													4	9					0	0	0.010729	0	0
PTPRO	5800	broad.mit.edu	37	12	15654567	15654567	+	Silent	SNP	T	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr12:15654567T>C	uc001rcv.1	+	5	849	c.675T>C	c.(673-675)CCT>CCC	p.P225P	PTPRO_uc001rcw.1_Silent_p.P225P|PTPRO_uc001rcu.1_Silent_p.P225P	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	225	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				CTTATCCACCTCAAAATATTT	0.348000													17	38					0	0	0.008871	0	0
TPP2	7174	broad.mit.edu	37	13	103290661	103290661	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr13:103290661G>A	uc001vpi.3	+	15	2012	c.1909G>A	c.(1909-1911)GCA>ACA	p.A637T		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	637					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGTTATAGCAGCAAAGTAAGT	0.393000													4	107					0	0	0.009096	0	0
RGS6	9628	broad.mit.edu	37	14	72961928	72961928	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr14:72961928C>A	uc001xna.3	+	13	1446	c.923C>A	c.(922-924)CCT>CAT	p.P308H	RGS6_uc010ttn.1_Missense_Mutation_p.P308H|RGS6_uc001xmx.3_Missense_Mutation_p.P308H|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.P308H|RGS6_uc010ttp.1_Missense_Mutation_p.P239H|RGS6_uc001xmz.1_Missense_Mutation_p.P169H	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	308	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		CCATCCAACCCTTGGATCAGC	0.443000													108	143					1.56226e-53	1.82264e-53	0.014410	1	0
ATP8B4	79895	broad.mit.edu	37	15	50189590	50189590	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr15:50189590A>C	uc001zxu.2	-	23	2738	c.2596T>G	c.(2596-2598)TAT>GAT	p.Y866D	ATP8B4_uc010ber.2_Missense_Mutation_p.Y739D|ATP8B4_uc010ufd.1_Missense_Mutation_p.Y676D|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxv.1_Missense_Mutation_p.Y164D	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	866	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		ATTCGGAAATAAGACCACCTT	0.413000													92	106					0	0	0.014410	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383000													5	13					0	0	0.003080	0	0
ZNF688	146542	broad.mit.edu	37	16	30581515	30581515	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr16:30581515A>T	uc002dyt.2	-	3	1331	c.553T>A	c.(553-555)TGC>AGC	p.C185S	ZNF688_uc002dys.2_Missense_Mutation_p.C171S|uc002dyu.2_5'Flank	NM_145271	NP_660314	P0C7X2	ZN688_HUMAN	zinc finger protein 688 isoform a	185	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGTCCGTGCACACGTGGCGC	0.687000													10	13					0	0	0.010729	0	0
HOXB8	3218	broad.mit.edu	37	17	46691864	46691864	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr17:46691864G>A	uc002inw.2	-	1	438	c.203C>T	c.(202-204)CCC>CTC	p.P68L		NM_024016	NP_076921	P17481	HXB8_HUMAN	homeobox B8	68						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGCTGGTAGGGAGCCGTGGA	0.672000													23	28					0	0	0.014323	0	0
C17orf101	79701	broad.mit.edu	37	17	80367258	80367258	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr17:80367258C>T	uc002keu.1	-	4	510	c.409G>A	c.(409-411)GGA>AGA	p.G137R	C17orf101_uc002ket.1_Missense_Mutation_p.G137R|C17orf101_uc010dip.1_RNA	NM_024648	NP_078924	Q6PK18	CQ101_HUMAN	hypothetical protein LOC79701 isoform 1	137	Lumenal (Potential).					integral to membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)	1						CCGTCAGATCCTCCCAGGGAG	0.468000													3	54					0	0	0.004672	0	0
DCC	1630	broad.mit.edu	37	18	50731664	50731664	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr18:50731664C>T	uc002lfe.1	+	10	2239	c.1652C>T	c.(1651-1653)CCT>CTT	p.P551L	DCC_uc010xdr.1_Missense_Mutation_p.P399L|DCC_uc010dpf.1_Missense_Mutation_p.P206L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	551	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGGGAACCCCCTGCCTATGCA	0.458000													59	148					0	0	0.014410	0	0
FEM1A	55527	broad.mit.edu	37	19	4792851	4792851	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr19:4792851C>T	uc002mbf.2	+	1	1124	c.985C>T	c.(985-987)CGT>TGT	p.R329C	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	329	TPR 1.				regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CATGGAGCTGCGTCACCAGGG	0.607000													22	33					0	0	0.010504	0	0
RFX1	5989	broad.mit.edu	37	19	14083696	14083696	+	Silent	SNP	G	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr19:14083696G>C	uc002mxv.2	-	9	1445	c.1173C>G	c.(1171-1173)GGC>GGG	p.G391G	RFX1_uc010dzi.2_Silent_p.G391G	NM_002918	NP_002909	P22670	RFX1_HUMAN	regulatory factor X1	391	Gly-rich.				immune response	nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			lung(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.67e-23)			cgcctcccccgccgccgccgc	0.358000													2	9					0	0	0.004672	0	0
C19orf50	79036	broad.mit.edu	37	19	18679431	18679431	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr19:18679431C>T	uc002njo.2	+	5	663	c.521C>T	c.(520-522)ACG>ATG	p.T174M	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Missense_Mutation_p.T174M	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	174							protein binding				0						GAGGAGATGACGGGCGAATAG	0.652000													15	29					0	0	0.024245	0	0
TTN	7273	broad.mit.edu	37	2	179435704	179435704	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr2:179435704C>T	uc010zfg.1	-	275	67675	c.67451G>A	c.(67450-67452)CGT>CAT	p.R22484H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R16179H|TTN_uc010zfi.1_Missense_Mutation_p.R16112H|TTN_uc010zfj.1_Missense_Mutation_p.R15987H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23411							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCATCCAACGGCCCTCAGG	0.408000													83	123					0	0	0.014410	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								28	54					0	0	0.019004	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617000													7	33					0	0	0.006214	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659591	24659591	+	RNA	SNP	A	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr22:24659591A>G	uc002zzs.3	+	7		c.3323A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ACTCACTGACATCGAAGGCTG	0.632000													4	32					0	0	0.003080	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659593	24659593	+	RNA	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr22:24659593C>T	uc002zzs.3	+	7		c.3325C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TCACTGACATCGAAGGCTGCC	0.632000													4	31					0	0	0.006214	0	0
ELFN2	114794	broad.mit.edu	37	22	37770047	37770047	+	Missense_Mutation	SNP	C	T	T	rs143903281		TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr22:37770047C>T	uc003asq.3	-	3	2314	c.1528G>A	c.(1528-1530)GGC>AGC	p.G510S		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	510	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CCGTCCCCGCCGGCGCCTGTG	0.662000													30	33					0	0	0.015359	0	0
SETD2	29072	broad.mit.edu	37	3	47155394	47155394	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr3:47155394C>G	uc003cqs.2	-	5	4740	c.4687G>C	c.(4687-4689)GGC>CGC	p.G1563R	SETD2_uc003cqv.2_Missense_Mutation_p.G1552R	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1563	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		GCTCTCAAGCCCCAGCCTTTC	0.338000			N|F|S|Mis		clear cell renal carcinoma								23	48					0	0	0.021523	0	0
TKT	7086	broad.mit.edu	37	3	53276233	53276233	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr3:53276233C>T	uc003dgo.2	-	2	243	c.133G>A	c.(133-135)GCA>ACA	p.A45T	TKT_uc011beo.1_5'UTR|TKT_uc003dgq.2_Missense_Mutation_p.A45T|TKT_uc011beq.1_Missense_Mutation_p.A45T|TKT_uc011ber.1_5'UTR|TKT_uc011bep.1_Missense_Mutation_p.A45T	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	45					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	ATGATCTCTGCGGCGCTGCAG	0.582000													3	79					0	0	0.009096	0	0
PIK3CA	5290	broad.mit.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr3:178928079G>A	uc003fjk.2	+	8	1514	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	453	C2 PI3K-type.		E -> Q (in cancer; shows an increase in lipid kinase activity; may disrupt the interaction of the C2 PI3K-type domain with the iSH2 region of the p85 regulatory subunit).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E453K(5)|p.E453Q(1)|p.E453A(1)|p.P449_L455del(1)|p.G451_L456>V(1)|p.E453del(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCATGGATTAGAAGATTTGCT	0.348000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			41	52					0	0	0.009718	0	0
IGJ	3512	broad.mit.edu	37	4	71527853	71527853	+	Silent	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr4:71527853G>A	uc003hfn.3	-	2	285	c.144C>T	c.(142-144)TCC>TCT	p.S48S	IGJ_uc010ihz.2_Silent_p.S64S	NM_144646	NP_653247	P01591	IGJ_HUMAN	immunoglobulin J chain	48					immune response	extracellular region	antigen binding				0			Lung(101;0.235)			TAGGATCTTCGGAAGAACGGA	0.393000													44	70					0	0	0.014410	0	0
ANKRD56	345079	broad.mit.edu	37	4	77818021	77818021	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr4:77818021A>C	uc003hki.2	-	1	982	c.982T>G	c.(982-984)TGG>GGG	p.W328G		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	328											0						AGCACCGACCAGGCGCGGATA	0.652000													16	30					0	0	0.004990	0	0
PDGFC	56034	broad.mit.edu	37	4	157689077	157689077	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr4:157689077C>T	uc003iph.1	-	5	1260	c.769G>A	c.(769-771)GTG>ATG	p.V257M	PDGFC_uc003ipi.1_Missense_Mutation_p.V94M|PDGFC_uc011cis.1_Missense_Mutation_p.V94M|PDGFC_uc011cir.1_Missense_Mutation_p.V101M	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	257					central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		CTTATGGACACTGAGAAGTTA	0.428000													15	159					0	0	0.006122	0	0
ARSK	153642	broad.mit.edu	37	5	94918892	94918892	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr5:94918892G>T	uc003kld.2	+	4	847	c.689G>T	c.(688-690)TGG>TTG	p.W230L	ARSK_uc010jbg.2_Missense_Mutation_p.W71L|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	230						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		TCTCTTTATTGGCTTGAAAAA	0.313000													13	29					2.32078e-09	2.65233e-09	0.024245	1	0
ARHGAP26	23092	broad.mit.edu	37	5	142258943	142258943	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr5:142258943A>G	uc011dbj.1	+	4	352	c.317A>G	c.(316-318)GAG>GGG	p.E106G	ARHGAP26_uc003lmt.2_Missense_Mutation_p.E106G|ARHGAP26_uc003lmw.2_Missense_Mutation_p.E106G	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	106					actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CACCAGATTGAGAATGCCAGC	0.458000													3	125					0	0	0.004672	0	0
ODZ2	57451	broad.mit.edu	37	5	167674704	167674704	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr5:167674704A>G	uc010jjd.2	+	27	6733	c.6733A>G	c.(6733-6735)ATA>GTA	p.I2245V	ODZ2_uc003lzr.3_Missense_Mutation_p.I2015V|ODZ2_uc003lzt.3_Missense_Mutation_p.I1618V|ODZ2_uc010jje.2_Missense_Mutation_p.I1509V	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CCGGGATCGGATAACCAGACT	0.527000													27	45					0	0	0.007291	0	0
HIST1H4B	8366	broad.mit.edu	37	6	26027273	26027273	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr6:26027273C>T	uc003nfr.2	-	1	208	c.208G>A	c.(208-210)GCC>ACC	p.A70T		NM_003544	NP_003535	P62805	H4_HUMAN	histone cluster 1, H4b	70					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						TAGGTCACGGCGTCCCGGATC	0.577000											OREG0017238	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	56					0	0	0.009096	0	0
SCUBE3	222663	broad.mit.edu	37	6	35208200	35208200	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr6:35208200C>G	uc003okf.1	+	9	1008	c.1002C>G	c.(1000-1002)AAC>AAG	p.N334K	SCUBE3_uc003okg.1_Missense_Mutation_p.N333K|SCUBE3_uc003okh.1_Missense_Mutation_p.N221K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	334	EGF-like 8; calcium-binding (Potential).				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						TATGTGTCAACACACCAGGAA	0.507000													8	75					0	0	0.003080	0	0
LRFN2	57497	broad.mit.edu	37	6	40400680	40400680	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr6:40400680C>T	uc003oph.1	-	2	638	c.173G>A	c.(172-174)CGC>CAC	p.R58H		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	58	LRR 1.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GCCGCCCAGGCGCAGCTCCAC	0.602000													33	41					0	0	0.027894	0	0
MEP1A	4224	broad.mit.edu	37	6	46801256	46801256	+	Silent	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr6:46801256G>A	uc010jzh.1	+	11	1632	c.1590G>A	c.(1588-1590)TCG>TCA	p.S530S	MEP1A_uc011dwg.1_Silent_p.S252S|MEP1A_uc011dwh.1_Silent_p.S558S|MEP1A_uc011dwi.1_Silent_p.S430S	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	530	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TCACTACCTCGAAGTCGCACA	0.517000													16	155					0	0	0.028581	0	0
VKORC1L1	154807	broad.mit.edu	37	7	65419069	65419069	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr7:65419069G>A	uc003tul.2	+	3	415	c.313G>A	c.(313-315)GCA>ACA	p.A105T	VKORC1L1_uc011kds.1_Missense_Mutation_p.S68N|VKORC1L1_uc003tum.1_5'Flank	NM_173517	NP_775788	Q8N0U8	VKORL_HUMAN	vitamin K epoxide reductase complex, subunit	105	Helical; (Potential).					integral to membrane					0		Lung NSC(55;0.197)			Menadione(DB00170)|Warfarin(DB00682)	AGGCATGACAGCAAGCGCTGT	0.537000													3	76					0	0	0.009096	0	0
PTCD1	26024	broad.mit.edu	37	7	99022522	99022522	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr7:99022522C>A	uc003uqh.2	-	6	1764	c.1633G>T	c.(1633-1635)GTC>TTC	p.V545F	PTCD1_uc011kiw.1_Missense_Mutation_p.V594F	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	545	PPR 7.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TTTGCCAGGACCGGCAACAGC	0.597000													27	32					1.74197e-06	1.91275e-06	0.006320	1	0
FANCC	2176	broad.mit.edu	37	9	98009714	98009714	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr9:98009714C>T	uc004avh.2	-	3	512	c.250G>A	c.(250-252)GAT>AAT	p.D84N	FANCC_uc004avi.3_Missense_Mutation_p.D84N|FANCC_uc010mrm.1_RNA|FANCC_uc011lul.1_RNA	NM_000136	NP_000127	Q00597	FANCC_HUMAN	Fanconi anemia, complementation group C	84					protein complex assembly	cytosol|nucleoplasm	protein binding			kidney(1)	1		Acute lymphoblastic leukemia(62;0.138)				TGATTCTTACCATATGCTAAA	0.323000			D|Mis|N|F|S			AML|leukemia		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				20	67					0	0	0.016522	0	0
NIPSNAP3B	55335	broad.mit.edu	37	9	107531159	107531159	+	Missense_Mutation	SNP	G	A	A	rs141198887	byFrequency	TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr9:107531159G>A	uc004bci.2	+	3	358	c.287G>A	c.(286-288)CGA>CAA	p.R96Q	NIPSNAP3A_uc011lvu.1_Intron|NIPSNAP3B_uc004bcj.1_RNA	NM_018376	NP_060846	Q9BS92	NPS3B_HUMAN	nipsnap homolog 3B	96										pancreas(1)|skin(1)	2						TTTGCTCATCGAGCTGAAGTT	0.343000													7	31					0	0	0.004482	0	0
FUBP1	8880	broad.mit.edu	37	1	78430888	78430888	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr1:78430888delA	uc001dii.2	-	8	590	c.501delT	c.(499-501)ATTfs	p.I167fs	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Frame_Shift_Del_p.I188fs	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	167					transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CTTTTTCAACAATCTGGTCCA	0.393													53	7	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													7	148	---	---	---	---					
MIR337	442905	broad.mit.edu	37	14	101340843	101340843	+	RNA	DEL	G	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr14:101340843delG	hsa-mir-337|MI0000806	+			c.14delG			uc010txi.1_RNA|MIR665_hsa-mir-665|MI0005563_5'Flank																	0						GTCAGTAGTTGGGGGGTGGGA	0.602													2	4	---	---	---	---					
MRC2	9902	broad.mit.edu	37	17	60757562	60757564	+	In_Frame_Del	DEL	ACG	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr17:60757562_60757564delACG	uc002jad.2	+	15	2732_2734	c.2330_2332delACG	c.(2329-2334)CACGAC>CAC	p.D781del	MRC2_uc010ddq.1_RNA|MRC2_uc002jae.2_5'Flank|MRC2_uc002jaf.2_5'Flank	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	781	Extracellular (Potential).|C-type lectin 4.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CGGAGCCGGCACGACGACGACGA	0.645													7	104	---	---	---	---					
OR7E24	26648	broad.mit.edu	37	19	9361741	9361741	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr19:9361741delT	uc002mlb.1	+	1	22	c.22delT	c.(22-24)TTTfs	p.F8fs		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCCAATTCTCTTTTTTTTTTT	0.388													4	9	---	---	---	---					
KIFC2	90990	broad.mit.edu	37	8	145692175	145692176	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DU-8164-01A-11D-2253-08	TCGA-DU-8164-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	67139b71-a2d8-4a49-a684-51a4804e294a	79381346-232e-46b8-a3fa-c93df24692ca	g.chr8:145692175_145692176delAG	uc003zcz.2	+	2	197_198	c.132_133delAG	c.(130-135)CCAGACfs	p.P44fs	CYHR1_uc003zcv.2_5'Flank|CYHR1_uc003zcw.2_5'Flank|CYHR1_uc003zcx.2_5'Flank|CYHR1_uc003zcy.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	44_45					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GCCGGCGCCCAGACCTGCCCGC	0.777													2	4	---	---	---	---					
