Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MIB2	142678	broad.mit.edu	37	1	1563188	1563188	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr1:1563188C>T	uc001agg.2	+	13	1960	c.1833C>T	c.(1831-1833)CGC>CGT	p.R611R	MIB2_uc001agh.2_Silent_p.R597R|MIB2_uc001agi.2_Silent_p.R607R|MIB2_uc001agj.2_Silent_p.R452R|MIB2_uc001agk.2_Silent_p.R546R|MIB2_uc001agl.1_Silent_p.R567R|MIB2_uc001agm.2_Silent_p.R488R|MIB2_uc010nyq.1_Silent_p.R567R|MIB2_uc009vkh.2_Silent_p.R417R|MIB2_uc001agn.2_Silent_p.R243R|MIB2_uc001ago.2_5'Flank	NM_080875	NP_543151	Q96AX9	MIB2_HUMAN	mindbomb homolog 2	611	ANK 3.				Notch signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade	endosome	actin binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.26e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.54e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|BRCA - Breast invasive adenocarcinoma(365;0.00786)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGTGTGAGCGCGGCTGTGACG	0.692													8	12					0	0	0.047766	0	0
CROCCL2	114819	broad.mit.edu	37	1	16809784	16809784	+	RNA	SNP	T	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr1:16809784T>G	uc001ayt.2	-	10		c.2002A>C			CROCCL2_uc001ays.2_RNA	NR_023386				Homo sapiens mRNA for KIAA1922 protein, partial cds.												0						CCCGGCACCTTCTCAGGAGCT	0.632													2	10					0	0	0.004672	0	0
HCN3	57657	broad.mit.edu	37	1	155257756	155257756	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr1:155257756G>A	uc001fjz.1	+	8	1835	c.1827G>A	c.(1825-1827)GCG>GCA	p.A609A	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Silent_p.A304A	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	609	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TGGTACATGCGCCCCTTCAGG	0.627													8	95					0	0	0.069234	0	0
OR1C1	26188	broad.mit.edu	37	1	247920937	247920937	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr1:247920937C>T	uc010pza.1	-	1	772	c.772G>A	c.(772-774)GTC>ATC	p.V258I		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CTGAAATAGACGGCGATGGCT	0.512													51	44					0	0	0.048971	0	0
LDB1	8861	broad.mit.edu	37	10	103871263	103871263	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr10:103871263G>A	uc009xwz.2	-	2	399	c.56C>T	c.(55-57)TCG>TTG	p.S19L	LDB1_uc001kuk.3_5'UTR|LDB1_uc001kul.3_5'UTR	NM_001113407	NP_001106878	Q86U70	LDB1_HUMAN	LIM domain binding 1 isoform 1	19					histone H3-K4 acetylation|negative regulation of erythrocyte differentiation|negative regulation of transcription, DNA-dependent|positive regulation of hemoglobin biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription elongation, DNA-dependent|transcription, DNA-dependent|transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	nuclear chromatin|protein complex	LIM domain binding|protein homodimerization activity|transcription corepressor activity			large_intestine(1)	1		Colorectal(252;0.122)		Epithelial(162;1.11e-07)|all cancers(201;1.82e-06)		CTCCTTCGGCGAGTACAGCTT	0.418													42	62					0	0	0.104719	0	0
PLAC1L	219990	broad.mit.edu	37	11	59812148	59812148	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:59812148T>C	uc001nol.2	+	3	433	c.248T>C	c.(247-249)GTT>GCT	p.V83A		NM_173801	NP_776162	Q86WS3	PLACL_HUMAN	placenta-specific 1-like precursor	83						extracellular region				ovary(2)|skin(1)	3						TCCTAGGTAGTTTCTGAGGAA	0.398													28	135					0	0	0.099896	0	0
TMEM109	79073	broad.mit.edu	37	11	60687346	60687346	+	Missense_Mutation	SNP	G	C	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:60687346G>C	uc001nqg.2	+	2	559	c.181G>C	c.(181-183)GTG>CTG	p.V61L	TMEM109_uc001nqh.2_Missense_Mutation_p.V61L	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	61						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						AGGTCGATCTGTGCGAGGGAC	0.542													13	247					0	0	0.033300	0	0
MTA2	9219	broad.mit.edu	37	11	62361480	62361480	+	Missense_Mutation	SNP	A	C	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:62361480A>C	uc001ntq.1	-	18	2255	c.1874T>G	c.(1873-1875)ATG>AGG	p.M625R	TUT1_uc001nto.2_5'Flank|MTA2_uc010rlx.1_Missense_Mutation_p.M452R	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	625					chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AGCTCGCCGCATTTCCAGATG	0.592											OREG0021027	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	237					0	0	0.024245	0	0
GANAB	23193	broad.mit.edu	37	11	62400156	62400156	+	Missense_Mutation	SNP	T	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:62400156T>G	uc001nub.2	-	9	910	c.877A>C	c.(877-879)ATG>CTG	p.M293L	GANAB_uc001nua.2_Missense_Mutation_p.M315L|GANAB_uc001nuc.2_Missense_Mutation_p.M196L|GANAB_uc010rma.1_Missense_Mutation_p.M201L|GANAB_uc010rmb.1_Missense_Mutation_p.M179L	NM_198334	NP_938148	Q14697	GANAB_HUMAN	neutral alpha-glucosidase AB isoform 2	293					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|Golgi apparatus|melanosome	carbohydrate binding|glucan 1,3-alpha-glucosidase activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5						TACAAGGCCATTGGGTTGTAC	0.542													24	554					0	0	0.108266	0	0
CCDC87	55231	broad.mit.edu	37	11	66359044	66359044	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:66359044C>T	uc001oiq.3	-	1	1511	c.1443G>A	c.(1441-1443)ATG>ATA	p.M481I	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	481										ovary(1)|skin(1)	2						TATCAATATCCATTTTTTCAA	0.458													14	311					0	0	0.028581	0	0
C11orf92	399948	broad.mit.edu	37	11	111167023	111167023	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:111167023C>T	uc001pld.2	-	2	2590	c.181G>A	c.(181-183)GGG>AGG	p.G61R	C11orf92_uc001ple.2_RNA|C11orf93_uc010rwf.1_5'Flank	NM_207429	NP_997312			hypothetical protein LOC399948											lung(1)	1						TTACAGACCCCCTGACTTCCA	0.547													7	126					0	0	0.038147	0	0
ZW10	9183	broad.mit.edu	37	11	113628513	113628513	+	Missense_Mutation	SNP	T	C	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr11:113628513T>C	uc001poe.2	-	7	833	c.796A>G	c.(796-798)ATA>GTA	p.I266V	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	266	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		TGGCTTTCTATCACAGCATGA	0.378													16	147					0	0	0.024245	0	0
LRP1	4035	broad.mit.edu	37	12	57577624	57577624	+	Missense_Mutation	SNP	C	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr12:57577624C>A	uc001snd.2	+	36	6327	c.5861C>A	c.(5860-5862)ACG>AAG	p.T1954K		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1954	LDL-receptor class B 17.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CGGGACCAGACGTGGCGTGAA	0.612													3	119					0.004672	0.00514597	0.004672	1	0
STAB2	55576	broad.mit.edu	37	12	104049284	104049284	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr12:104049284C>T	uc001tjw.2	+	15	1845	c.1659C>T	c.(1657-1659)TAC>TAT	p.Y553Y		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	553	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GTGGACCATACACCATTTTTG	0.423													60	53					0	0	0.048971	0	0
TDG	6996	broad.mit.edu	37	12	104374683	104374683	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr12:104374683C>T	uc001tkg.2	+	4	644	c.421C>T	c.(421-423)CCG>TCG	p.P141S	TDG_uc009zuk.2_Missense_Mutation_p.P137S|TDG_uc010swi.1_5'UTR|TDG_uc010swj.1_5'UTR	NM_003211	NP_003202	Q13569	TDG_HUMAN	thymine-DNA glycosylase	141					depyrimidination|mismatch repair	nucleoplasm	damaged DNA binding|mismatched DNA binding|protein binding|pyrimidine-specific mismatch base pair DNA N-glycosylase activity			ovary(3)|lung(3)	6				BRCA - Breast invasive adenocarcinoma(302;0.00114)		TGGCATAAACCCGGGACTAAT	0.363								BER_DNA_glycosylases					23	208					0	0	0.099896	0	0
GABRA5	2558	broad.mit.edu	37	15	27128668	27128668	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr15:27128668G>A	uc001zbd.1	+	7	800	c.461G>A	c.(460-462)CGG>CAG	p.R154Q	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	154	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AAGCTGCTGCGGCTGGAGGAC	0.527													8	43					0	0	0.038147	0	0
ACAN	176	broad.mit.edu	37	15	89401845	89401845	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr15:89401845G>A	uc010upo.1	+	12	6403	c.6029G>A	c.(6028-6030)AGC>AAC	p.S2010N	ACAN_uc010upp.1_Missense_Mutation_p.S2010N|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2010					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GATTTTGCCAGCACCACCAAT	0.522													3	102					0	0	0.009096	0	0
PKD1	5310	broad.mit.edu	37	16	2147949	2147949	+	Nonsense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr16:2147949G>A	uc002cos.1	-	31	10296	c.10087C>T	c.(10087-10089)CAG>TAG	p.Q3363*	PKD1_uc002cot.1_Nonsense_Mutation_p.Q3363*|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	3363	Cytoplasmic (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						TCCAGCACCTGCTGCCCGGCA	0.662													3	31					0	0	0.004672	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147367	26147367	+	Missense_Mutation	SNP	A	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr16:26147367A>T	uc002dof.2	+	2	1561	c.1169A>T	c.(1168-1170)AAA>ATA	p.K390I		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	390	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TATTTCAACAAAACCAAGGGG	0.517													21	85					0	0	0.062417	0	0
APOB48R	55911	broad.mit.edu	37	16	28507468	28507468	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr16:28507468G>A	uc002dqb.1	+	3	1089	c.1079G>A	c.(1078-1080)GGG>GAG	p.G360E	uc010vct.1_Intron|APOB48R_uc010byg.1_5'UTR	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	360	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCTCAGGAGGGGACGAGGCC	0.657													16	13					0	0	0.028581	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904114	21904114	+	RNA	SNP	A	G	G	rs75848292		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr17:21904114A>G	uc002gza.2	+	1		c.53A>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccggctgccaggagtcgcaa	0													15	31					0	0	0.024245	0	0
GRIN2C	2905	broad.mit.edu	37	17	72851092	72851092	+	Missense_Mutation	SNP	C	A	A	rs142837005	byFrequency	TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr17:72851092C>A	uc002jlt.1	-	2	296	c.140G>T	c.(139-141)CGT>CTT	p.R47L	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.R47L|GRIN2C_uc002jlv.1_Missense_Mutation_p.R47L	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	47	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	GAGGCGGGCACGGAACTGGGC	0.687													5	66					1.23904e-05	1.38481e-05	0.014758	1	0
POTEC	388468	broad.mit.edu	37	18	14513734	14513734	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr18:14513734C>T	uc010dln.2	-	10	1914	c.1460G>A	c.(1459-1461)GGA>GAA	p.G487E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	487										skin(3)	3						TTGTGATATTCCAGTGTTCTG	0.323													4	133					0	0	0.014758	0	0
CDH19	28513	broad.mit.edu	37	18	64172539	64172539	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr18:64172539C>T	uc002lkc.1	-	12	1967	c.1829G>A	c.(1828-1830)GGG>GAG	p.G610E	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.G487S	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	610	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				AAAAATAAACCCTGATGAAGA	0.303													10	165					0	0	0.058154	0	0
DOHH	83475	broad.mit.edu	37	19	3492382	3492382	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr19:3492382C>T	uc002lxs.2	-	4	630	c.467G>A	c.(466-468)CGT>CAT	p.R156H	DOHH_uc010xhl.1_Missense_Mutation_p.R156H	NM_031304	NP_112594	Q9BU89	DOHH_HUMAN	deoxyhypusine hydroxylase/monooxygenase	156					peptidyl-lysine modification to hypusine|post-translational protein modification	cytosol	deoxyhypusine monooxygenase activity|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCACGTCACGCTCCTCAGC	0.746													3	3					0	0	0.009096	0	0
C3	718	broad.mit.edu	37	19	6697496	6697496	+	Silent	SNP	G	A	A	rs140780068		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr19:6697496G>A	uc002mfm.2	-	21	2717	c.2655C>T	c.(2653-2655)ACC>ACT	p.T885T		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	885					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GGATGGTTACGGTCTGCTGGT	0.587													9	117					0	0	0.047766	0	0
NCAN	1463	broad.mit.edu	37	19	19337662	19337662	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr19:19337662G>A	uc002nlz.2	+	7	1539	c.1440G>A	c.(1438-1440)AGG>AGA	p.R480R	NCAN_uc010ecc.1_Silent_p.R44R	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	480					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CTAGGAGAAGGGGGCGCTTCA	0.667													3	103					0	0	0.004672	0	0
PLD3	23646	broad.mit.edu	37	19	40883897	40883897	+	Silent	SNP	C	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr19:40883897C>G	uc002onm.3	+	13	1688	c.1290C>G	c.(1288-1290)ACC>ACG	p.T430T	PLD3_uc002onj.3_Silent_p.T430T|PLD3_uc002onk.3_Silent_p.T430T|PLD3_uc002onl.3_Silent_p.T430T|PLD3_uc002onn.2_Silent_p.T430T	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	430	PLD phosphodiesterase 2.|Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			CTCTAGGAACCTCCAACTGGT	0.647													23	139					0	0	0.076483	0	0
CLIP4	79745	broad.mit.edu	37	2	29356592	29356592	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr2:29356592C>T	uc002rmv.2	+	5	678	c.439C>T	c.(439-441)CGC>TGC	p.R147C	CLIP4_uc002rmu.2_Missense_Mutation_p.R147C|CLIP4_uc010ezm.1_Missense_Mutation_p.R147C|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.R129C	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	147										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTTGCGGAGTCGCTGGACAAA	0.368													8	125					0	0	0.038147	0	0
LCLAT1	253558	broad.mit.edu	37	2	30863465	30863465	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr2:30863465A>G	uc002rnj.2	+	7	1434	c.1225A>G	c.(1225-1227)AAT>GAT	p.N409D	LCLAT1_uc010ymp.1_Missense_Mutation_p.N247D|LCLAT1_uc002rnl.2_Missense_Mutation_p.N371D|LCLAT1_uc010ymq.1_Missense_Mutation_p.N371D	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	409					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						GCCACATTTAAATTCAAAGAA	0.343													17	150					0	0	0.055883	0	0
CAPN13	92291	broad.mit.edu	37	2	30966407	30966407	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr2:30966407C>T	uc002rnn.2	-	12	1463	c.1287G>A	c.(1285-1287)TCG>TCA	p.S429S	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_5'UTR	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	429					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					TGTTTCTGAACGAGGAAAAAA	0.473													99	134					0	0	0.048971	0	0
PDE1A	5136	broad.mit.edu	37	2	183095781	183095781	+	Nonsense_Mutation	SNP	A	C	C			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr2:183095781A>C	uc002uos.2	-	6	627	c.543T>G	c.(541-543)TAT>TAG	p.Y181*	PDE1A_uc010zfp.1_Nonsense_Mutation_p.Y77*|PDE1A_uc002uoq.1_Nonsense_Mutation_p.Y181*|PDE1A_uc010zfq.1_Nonsense_Mutation_p.Y181*|PDE1A_uc002uor.2_Nonsense_Mutation_p.Y165*|PDE1A_uc002uou.2_Nonsense_Mutation_p.Y147*	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	181					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TAAACAGTTCATAAATCATAA	0.323													38	251					0	0	0.074837	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								45	92					0	0	0.048971	0	0
FAM182B	728882	broad.mit.edu	37	20	25848629	25848629	+	RNA	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr20:25848629C>T	uc002wvd.1	-	1		c.158G>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						gctgggatgccgtgctgcttc	0													2	5					0	0	0.004672	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066417	46066417	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr21:46066417C>T	uc002zfr.3	+	1	87	c.42C>T	c.(40-42)TCC>TCT	p.S14S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	14						keratin filament				ovary(1)	1						GCGCTTACTCCGACTCCTGGC	0.607													5	129					0	0	0.038147	0	0
MICALL1	85377	broad.mit.edu	37	22	38323471	38323471	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr22:38323471C>T	uc003aui.2	+	9	1603	c.1519C>T	c.(1519-1521)CCA>TCA	p.P507S		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	507	Pro-rich.					cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					CACACCATCGCCAGCGCTCAG	0.677													44	44					0	0	0.111260	0	0
SMC1B	27127	broad.mit.edu	37	22	45785706	45785706	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr22:45785706G>A	uc003bgc.2	-	10	1669	c.1617C>T	c.(1615-1617)GGC>GGT	p.G539G	SMC1B_uc003bgd.2_Silent_p.G539G|SMC1B_uc003bge.1_Silent_p.G322G	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	539	Flexible hinge.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGATGAACCGGCCAAAAACCT	0.413													5	225					0	0	0.021553	0	0
CELSR1	9620	broad.mit.edu	37	22	46929761	46929761	+	Missense_Mutation	SNP	C	T	T	rs145654024		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr22:46929761C>T	uc003bhw.1	-	1	3307	c.3307G>A	c.(3307-3309)GAC>AAC	p.D1103N		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1103	Extracellular (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ATCTGGAAGTCGGGCAGCACA	0.607													32	324					0	0	0.069456	0	0
GRM7	2917	broad.mit.edu	37	3	7188209	7188209	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr3:7188209G>A	uc003bqm.2	+	2	864	c.590G>A	c.(589-591)CGC>CAC	p.R197H	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.R197H|GRM7_uc003bql.2_Missense_Mutation_p.R197H	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	197	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TTCTTCTCTCGCGTGGTGCCA	0.522													34	174					0	0	0.069456	0	0
SCN10A	6336	broad.mit.edu	37	3	38797286	38797286	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr3:38797286C>T	uc003ciq.2	-	10	1454	c.1454G>A	c.(1453-1455)CGC>CAC	p.R485H		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	485					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	taccatcctgcgctGGTTGTA	0.229													6	222					0	0	0.021553	0	0
KLHL18	23276	broad.mit.edu	37	3	47361235	47361235	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr3:47361235C>T	uc003crd.2	+	2	348	c.222C>T	c.(220-222)TGC>TGT	p.C74C	KLHL18_uc003crc.2_Silent_p.C74C|KLHL18_uc011bav.1_Intron	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	74	BTB.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		TGATGGAGTGCAAGCAGGATG	0.493													16	279					0	0	0.028581	0	0
BOD1L	259282	broad.mit.edu	37	4	13604235	13604235	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr4:13604235A>G	uc003gmz.1	-	10	4406	c.4289T>C	c.(4288-4290)GTA>GCA	p.V1430A	BOD1L_uc010idr.1_Missense_Mutation_p.V767A	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1430							DNA binding			ovary(5)|breast(1)	6						GCCATTCTCTACTGTTGCTTT	0.378													5	167					0	0	0.014758	0	0
MAST4	375449	broad.mit.edu	37	5	66448610	66448610	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr5:66448610G>A	uc003jut.1	+	24	2942	c.2874G>A	c.(2872-2874)TCG>TCA	p.S958S	MAST4_uc003juw.2_Silent_p.S886S	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1150	PDZ.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCCACAGTTCGGGGAAGAACT	0.542													7	154					0	0	0.038147	0	0
IER3	8870	broad.mit.edu	37	6	30711944	30711944	+	Silent	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr6:30711944C>T	uc003nrn.2	-	2	272	c.240G>A	c.(238-240)CCG>CCA	p.P80P	FLOT1_uc003nrm.2_5'Flank|FLOT1_uc011dmr.1_5'Flank	NM_003897	NP_003888	P46695	IEX1_HUMAN	immediate early response 3	80	Cytoplasmic (Potential).				anatomical structure morphogenesis|anti-apoptosis|apoptosis	integral to membrane	protein binding				0						TGGCTGGGTTCGGTTCCTCGA	0.617													5	167					0	0	0.029380	0	0
GPR116	221395	broad.mit.edu	37	6	46826878	46826878	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr6:46826878C>T	uc003oyo.3	-	17	3051	c.2762G>A	c.(2761-2763)AGC>AAC	p.S921N	GPR116_uc011dwj.1_Missense_Mutation_p.S476N|GPR116_uc011dwk.1_Missense_Mutation_p.S350N|GPR116_uc003oyp.3_Missense_Mutation_p.S779N|GPR116_uc003oyq.3_Missense_Mutation_p.S921N|GPR116_uc010jzi.1_Missense_Mutation_p.S593N	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	921	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CATCACTAAGCTCTCTGCAAA	0.448													42	192					0	0	0.048971	0	0
MCM9	254394	broad.mit.edu	37	6	119245149	119245149	+	Missense_Mutation	SNP	A	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr6:119245149A>G	uc003pyh.2	-	3	711	c.448T>C	c.(448-450)TGC>CGC	p.C150R		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	150					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		ACATGCTTGCATTTGTTACAC	0.458													27	350					0	0	0.099896	0	0
SCRN1	9805	broad.mit.edu	37	7	29963705	29963705	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr7:29963705G>A	uc010kvp.2	-	7	1317	c.1113C>T	c.(1111-1113)ACC>ACT	p.T371T	SCRN1_uc011jzy.1_Silent_p.T303T|SCRN1_uc003tak.2_Silent_p.T371T|SCRN1_uc011jzz.1_Silent_p.T371T|SCRN1_uc011kaa.1_Silent_p.T391T|SCRN1_uc011jzw.1_Silent_p.T238T|SCRN1_uc011jzx.1_Silent_p.T194T	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	371					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						GCTCCAGCATGGTGCTCCTCA	0.557													17	150					0	0	0.033300	0	0
RNF133	168433	broad.mit.edu	37	7	122338205	122338205	+	Silent	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr7:122338205G>A	uc003vkj.1	-	1	1004	c.768C>T	c.(766-768)TGC>TGT	p.C256C	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	256	RING-type; atypical.					endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						AGCAAATTACGCAGCTATCCC	0.398													122	355					0	0	0.048971	0	0
TSGA14	95681	broad.mit.edu	37	7	130038826	130038826	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr7:130038826C>T	uc003vpz.2	-	11	1075	c.1028G>A	c.(1027-1029)CGA>CAA	p.R343Q	TSGA14_uc003vpy.2_Missense_Mutation_p.R105Q|TSGA14_uc010lmf.2_Missense_Mutation_p.R140Q|TSGA14_uc003vqa.2_Missense_Mutation_p.R271Q|TSGA14_uc011kpg.1_Missense_Mutation_p.R255Q	NM_018718	NP_061188	Q9BYV8	CEP41_HUMAN	testis specific, 14	343					G2/M transition of mitotic cell cycle	centrosome|cytosol					0	Melanoma(18;0.0435)					CTGAGCGCTTCGGGCACCAGG	0.577													46	480					0	0	0.039052	0	0
FAM154A	158297	broad.mit.edu	37	9	18928507	18928507	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr9:18928507C>T	uc003zni.1	-	4	1246	c.968G>A	c.(967-969)CGA>CAA	p.R323Q	FAM154A_uc010mip.1_Missense_Mutation_p.R131Q	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	323										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		AAGTGCAGGTCGGCAGGACTG	0.562													9	147					0	0	0.058154	0	0
C9orf79	286234	broad.mit.edu	37	9	90501762	90501762	+	Missense_Mutation	SNP	G	A	A			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr9:90501762G>A	uc004app.3	+	4	2395	c.2360G>A	c.(2359-2361)CGC>CAC	p.R787H	C9orf79_uc004apo.1_Missense_Mutation_p.R599H	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	787						integral to membrane				ovary(3)	3						CCTGTGCGTCGCTCCTGGCTC	0.577													26	178					0	0	0.091800	0	0
FAM102A	399665	broad.mit.edu	37	9	130707146	130707146	+	Missense_Mutation	SNP	T	C	C	rs11558950		TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr9:130707146T>C	uc004bsx.1	-	9	1028	c.949A>G	c.(949-951)ACC>GCC	p.T317A	FAM102A_uc004bsw.1_Missense_Mutation_p.T175A|FAM102A_uc004bsy.1_Missense_Mutation_p.T45A	NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	317										ovary(1)	1						TCCACCCAGGTCGGGTGGCTC	0.607													3	91					0	0	0.004672	0	0
ABCA2	20	broad.mit.edu	37	9	139912486	139912486	+	Missense_Mutation	SNP	C	T	T			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr9:139912486C>T	uc011mem.1	-	14	2180	c.2032G>A	c.(2032-2034)GAT>AAT	p.D678N	ABCA2_uc011mel.1_Missense_Mutation_p.D679N|ABCA2_uc004ckl.1_Missense_Mutation_p.D609N|ABCA2_uc004ckm.1_Missense_Mutation_p.D709N|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	678					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TCCACCACATCGTGCCCCACA	0.567													10	36					0	0	0.093190	0	0
NDOR1	27158	broad.mit.edu	37	9	140110623	140110623	+	Silent	SNP	A	G	G			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr9:140110623A>G	uc004clw.2	+	13	1743	c.1632A>G	c.(1630-1632)GCA>GCG	p.A544A	NDOR1_uc004clx.2_Silent_p.A553A|NDOR1_uc011mes.1_Silent_p.A537A|NDOR1_uc004cly.2_Intron	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	544	NADP (By similarity).				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		GCCAGGGTGCATACTTCTACC	0.642													17	135					0	0	0.043863	0	0
TP53	7157	broad.mit.edu	37	17	7577101	7577101	+	Frame_Shift_Del	DEL	C	-	-			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chr17:7577101delC	uc002gim.2	-	8	1031	c.837delG	c.(835-837)GGGfs	p.G279fs	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Frame_Shift_Del_p.G279fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Frame_Shift_Del_p.G147fs|TP53_uc010cng.1_Frame_Shift_Del_p.G147fs|TP53_uc002gii.1_Frame_Shift_Del_p.G147fs|TP53_uc010cnh.1_Frame_Shift_Del_p.G279fs|TP53_uc010cni.1_Frame_Shift_Del_p.G279fs|TP53_uc002gij.2_Frame_Shift_Del_p.G279fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	279	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		G -> E (in sporadic cancers; somatic mutation).|G -> R (in sporadic cancers; somatic mutation).|G -> W (in sporadic cancers; somatic mutation).|G -> V (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G279E(31)|p.G279R(7)|p.0?(7)|p.G279V(4)|p.G279G(3)|p.G279W(2)|p.?(2)|p.G279fs*65(2)|p.G279fs*27(2)|p.A276_R283delACPGRDRR(1)|p.A276fs*64(1)|p.G279_R280delGR(1)|p.R280fs*62(1)|p.G279fs*59(1)|p.F270_D281del12(1)|p.P278_G279insXXXXX(1)|p.C275_R283delCACPGRDRR(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.V272_K292del21(1)|p.C275fs*20(1)|p.G279fs*26(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCGGTCTCTCCCAGGACAGG	0.547		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			90	20	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76907649	76907650	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-E1-5302-01A-01D-1468-08	TCGA-E1-5302-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	b6552b4f-bc4b-4bad-91d7-582582c5f2f5	652a742e-454b-4aeb-81d1-4fc5fb962018	g.chrX:76907649_76907650delTC	uc004ecp.3	-	15	4743_4744	c.4511_4512delGA	c.(4510-4512)CGAfs	p.R1504fs	ATRX_uc004ecq.3_Frame_Shift_Del_p.R1466fs|ATRX_uc004eco.3_Frame_Shift_Del_p.R1289fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1504					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CAATACGTTTTCGTCTCTCTTC	0.317			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						180	59	---	---	---	---					
