Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17085532	17085532	+	Splice_Site	SNP	T	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr1:17085532T>C	uc010ock.1	-	10	1161	c.1161_splice	c.e10-1	p.Q387_splice	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GTTAGGGCCCTGGCGGGGCCG	0.662000													3	39					0	0	0.115264	0	0
FUBP1	8880	broad.mit.edu	37	1	78425869	78425869	+	Missense_Mutation	SNP	C	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr1:78425869C>G	uc001dii.2	-	16	1665	c.1576G>C	c.(1576-1578)GCT>CCT	p.A526P	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.A547P	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	526	Pro-rich.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CATCTTCTACCTGGATCAGGA	0.413000													14	14					0	0	0.479597	0	0
PALMD	54873	broad.mit.edu	37	1	100154373	100154373	+	Missense_Mutation	SNP	C	T	T	rs145796584		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr1:100154373C>T	uc001dsg.2	+	7	1000	c.557C>T	c.(556-558)ACT>ATT	p.T186I	PALMD_uc001dsf.2_Missense_Mutation_p.T186I	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	186					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GACTTGAAGACTGGAGAAAGT	0.323000													3	46					0	0	0.115264	0	0
JMJD1C	221037	broad.mit.edu	37	10	64975203	64975203	+	Missense_Mutation	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr10:64975203G>A	uc001jmn.2	-	7	1135	c.835C>T	c.(835-837)CGT>TGT	p.R279C	JMJD1C_uc001jml.2_Missense_Mutation_p.R60C|JMJD1C_uc001jmm.2_Translation_Start_Site|JMJD1C_uc010qiq.1_Missense_Mutation_p.R97C|JMJD1C_uc009xpi.2_Missense_Mutation_p.R97C|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Translation_Start_Site	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	279					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GCTTGGGCACGTGTATAATGG	0.378000													59	74					0	0	0.870114	0	0
PDZD7	79955	broad.mit.edu	37	10	102789858	102789858	+	Missense_Mutation	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr10:102789858G>A	uc001kso.1	-	2	334	c.119C>T	c.(118-120)ACG>ATG	p.T40M	PDZD7_uc001ksn.2_Missense_Mutation_p.T40M|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	40						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CAGGTATCGCGTTGCGGTGGA	0.657000													35	30					0	0	0.769981	0	0
OR8K3	219473	broad.mit.edu	37	11	56086683	56086683	+	Nonsense_Mutation	SNP	C	T	T	rs141093095		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr11:56086683C>T	uc010rjf.1	+	1	901	c.901C>T	c.(901-903)CGA>TGA	p.R301*		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATATGCCCTACGAAGGACATG	0.323000													3	33					0	0	0.115264	0	0
UNC93B1	81622	broad.mit.edu	37	11	67759236	67759236	+	Silent	SNP	G	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr11:67759236G>C	uc001omw.1	-	12	1655	c.1575C>G	c.(1573-1575)CGC>CGG	p.R525R		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	525					innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						TGCGGGGCTGGCGCGGGGCCA	0.721000													2	1					0	0	0.115264	0	0
DPY19L2	283417	broad.mit.edu	37	12	63994085	63994085	+	Splice_Site	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr12:63994085C>T	uc001srp.1	-	13	1540	c.1359_splice	c.e13+1	p.H453_splice	DPY19L2_uc009zqk.1_Splice_Site	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2						multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		AAAGTACTTACGTGGTCTGAA	0.219000													25	39					0	0	0.760397	0	0
PRMT5	10419	broad.mit.edu	37	14	23390166	23390166	+	Missense_Mutation	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr14:23390166C>T	uc001whm.1	-	17	1952	c.1861G>A	c.(1861-1863)GTC>ATC	p.V621I	RBM23_uc001whh.2_5'Flank|RBM23_uc001whg.2_5'Flank|RBM23_uc001whi.2_5'Flank|RBM23_uc010tne.1_5'Flank|RBM23_uc001whj.2_5'Flank|RBM23_uc001whk.1_5'Flank|PRMT5_uc001whl.1_Missense_Mutation_p.V604I|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.V515I|PRMT5_uc010tng.1_Missense_Mutation_p.V560I|PRMT5_uc010tnh.1_Missense_Mutation_p.V577I|PRMT5_uc001whn.1_Missense_Mutation_p.V450I	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	621					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		GCAGAACAGACTGGTGCTGTC	0.542000													15	31					0	0	0.520397	0	0
Unknown	0	broad.mit.edu	37	16	32190719	32190719	+	RNA	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr16:32190719C>T	uc010vfv.1	-	7		c.1105G>A								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		TATGAGACGTCGGACAGCTAC	0.507000													4	11					0	0	0.278610	0	0
FAM64A	54478	broad.mit.edu	37	17	6348641	6348641	+	Missense_Mutation	SNP	C	T	T	rs11538170		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:6348641C>T	uc002gcw.1	+	2	260	c.211C>T	c.(211-213)CGC>TGC	p.R71C	FAM64A_uc002gct.1_Missense_Mutation_p.R71C|FAM64A_uc002gcu.1_Missense_Mutation_p.R71C|FAM64A_uc002gcv.1_Missense_Mutation_p.R71C|FAM64A_uc002gcx.1_Missense_Mutation_p.R71C|FAM64A_uc002gcy.1_RNA|FAM64A_uc002gcz.1_RNA|FAM64A_uc002gda.1_Missense_Mutation_p.R71C|FAM64A_uc002gdb.1_Missense_Mutation_p.R71C	NM_019013	NP_061886	Q9BSJ6	FA64A_HUMAN	family with sequence similarity 64, member A	71						nucleolus	protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		CTCCTGGAAACGCCTGGAAAC	0.627000													20	44					0	0	0.557998	0	0
MYO15A	51168	broad.mit.edu	37	17	18052562	18052562	+	Missense_Mutation	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:18052562A>G	uc010vxh.1	+	33	7327	c.6989A>G	c.(6988-6990)GAC>GGC	p.D2330G		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2330	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCGGATGAGGACATGTCCACT	0.483000													10	14					0	0	0.387290	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542000													5	94					0	0	0.184627	0	0
SLFN12	55106	broad.mit.edu	37	17	33738552	33738552	+	Silent	SNP	C	T	T	rs150878441		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:33738552C>T	uc002hji.3	-	4	1919	c.1542G>A	c.(1540-1542)TCG>TCA	p.S514S	SLFN12_uc002hjj.3_Silent_p.S514S|SLFN12_uc010cts.2_Silent_p.S514S	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	514							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AAATTACTTGCGACCTTAAAT	0.393000													23	44					0	0	0.654019	0	0
LOC284100	284100	broad.mit.edu	37	17	36214092	36214092	+	RNA	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:36214092G>A	uc002hom.1	-	3		c.225C>T			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						ATTTCCTGTGGCAAATTCTGC	0.388000													3	26					0	0	0.150653	0	0
DNAH17	8632	broad.mit.edu	37	17	76456336	76456336	+	Missense_Mutation	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr17:76456336C>T	uc010dhp.1	-	4	565	c.343G>A	c.(343-345)GTC>ATC	p.V115I	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTCTCAGTGACGTTCTGGAAG	0.463000													6	5					0	0	0.217242	0	0
LAMA1	284217	broad.mit.edu	37	18	6999522	6999522	+	Missense_Mutation	SNP	C	T	T	rs146559010		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr18:6999522C>T	uc002knm.2	-	32	4679	c.4585G>A	c.(4585-4587)GTT>ATT	p.V1529I	LAMA1_uc010wzj.1_Missense_Mutation_p.V1005I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1529	Laminin EGF-like 17.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCCTGCAAACGCACTGCCCA	0.557000													3	30					0	0	0.115264	0	0
QTRT1	81890	broad.mit.edu	37	19	10812925	10812925	+	Missense_Mutation	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr19:10812925C>T	uc002mpr.2	+	3	471	c.446C>T	c.(445-447)GCG>GTG	p.A149V		NM_031209	NP_112486	Q9BXR0	TGT_HUMAN	queuine tRNA-ribosyltransferase 1	149					queuosine biosynthetic process	mitochondrion|nucleus|ribosome	metal ion binding|queuine tRNA-ribosyltransferase activity			skin(1)	1			Epithelial(33;1.55e-05)|all cancers(31;3.42e-05)			ATCCAGAATGCGCTGGGTGAG	0.542000													3	38					0	0	0.115264	0	0
KLHL26	55295	broad.mit.edu	37	19	18779269	18779269	+	Silent	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr19:18779269G>A	uc002njz.1	+	3	1089	c.1062G>A	c.(1060-1062)ACG>ACA	p.T354T		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	354	Kelch 1.									ovary(1)	1						GCAGCCACACGTGCGTGGCCG	0.677000													9	18					0	0	0.307466	0	0
ANKRD27	84079	broad.mit.edu	37	19	33096834	33096834	+	Silent	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr19:33096834A>G	uc002ntn.1	-	24	2556	c.2400T>C	c.(2398-2400)AAT>AAC	p.N800N		NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	800	ANK 9.				early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					TGGGTTTTGCATTCGAATCTA	0.473000													15	13					0	0	0.500413	0	0
CIC	23152	broad.mit.edu	37	19	42798878	42798878	+	Missense_Mutation	SNP	T	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr19:42798878T>G	uc002otf.1	+	19	4490	c.4450T>G	c.(4450-4452)TTC>GTC	p.F1484V		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1484					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CCATGGCTTCTTCCCGTCAGG	0.597000			T	DUX4	soft tissue sarcoma								34	12					0	0	0.779181	0	0
ZNF347	84671	broad.mit.edu	37	19	53643617	53643617	+	Missense_Mutation	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr19:53643617C>T	uc002qbb.1	-	5	2533	c.2464G>A	c.(2464-2466)GTG>ATG	p.V822M	ZNF347_uc010eql.1_Missense_Mutation_p.V823M|ZNF347_uc002qbc.1_Missense_Mutation_p.V823M	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	822					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ACTTTCCACACGTTACATTTG	0.413000													54	29					0	0	0.870114	0	0
APOB	338	broad.mit.edu	37	2	21234703	21234703	+	Silent	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:21234703C>T	uc002red.2	-	26	5165	c.5037G>A	c.(5035-5037)GGG>GGA	p.G1679G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1679					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCATAGATGCCCCAGAGAGGC	0.493000													30	64					0	0	0.706142	0	0
OTOF	9381	broad.mit.edu	37	2	26696893	26696893	+	Missense_Mutation	SNP	C	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:26696893C>G	uc002rhk.2	-	27	3501	c.3374G>C	c.(3373-3375)GGC>GCC	p.G1125A	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.G378A|OTOF_uc002rhi.2_Missense_Mutation_p.G435A|OTOF_uc002rhj.2_Missense_Mutation_p.G378A	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1125	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGCCGGATGCCCATGGGCAC	0.647000													20	38					0	0	0.575678	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131802995	131802995	+	Missense_Mutation	SNP	C	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:131802995C>A	uc002tsa.1	+	13	2417	c.1897C>A	c.(1897-1899)CAG>AAG	p.Q633K	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Missense_Mutation_p.Q633K|ARHGEF4_uc010fmx.1_Missense_Mutation_p.Q573K|ARHGEF4_uc002tsc.1_Missense_Mutation_p.Q176K	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	633					apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		TGCCAGCAAGCAGCAGGTCAC	0.617000													19	39					1.01871e-10	1.0956e-10	0.575678	1	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								27	42					0	0	0.693898	0	0
CPS1	1373	broad.mit.edu	37	2	211471549	211471549	+	Silent	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:211471549C>T	uc002vee.3	+	18	2208	c.2076C>T	c.(2074-2076)GGC>GGT	p.G692G	CPS1_uc010fur.2_Silent_p.G698G|CPS1_uc010fus.2_Silent_p.G241G	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	692	ATP-grasp 1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GCCACTTGGGCATTGTGGGTG	0.478000													37	33					0	0	0.788014	0	0
CCDC108	255101	broad.mit.edu	37	2	219900291	219900291	+	Silent	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr2:219900291C>T	uc002vjl.1	-	5	537	c.453G>A	c.(451-453)CTG>CTA	p.L151L	CCDC108_uc010zkp.1_Silent_p.L140L|CCDC108_uc010zkq.1_Silent_p.L86L|CCDC108_uc002vjn.2_Silent_p.L86L	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	151						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTTCCAATGCAGCTCCTCAG	0.502000													55	71					0	0	0.870114	0	0
PCSK2	5126	broad.mit.edu	37	20	17240949	17240949	+	Missense_Mutation	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr20:17240949G>A	uc002wpm.2	+	2	562	c.242G>A	c.(241-243)CGC>CAC	p.R81H	PCSK2_uc002wpl.2_Missense_Mutation_p.R62H|PCSK2_uc010zrm.1_Intron	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	81					enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AAGAGAAGACGCAGCCTACAC	0.532000													43	48					0	0	0.840704	0	0
BAGE2	85319	broad.mit.edu	37	21	11058309	11058309	+	Missense_Mutation	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr21:11058309A>G	uc002yit.1	-	3	339	c.131T>C	c.(130-132)GTA>GCA	p.V44A	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAAAGTGCTTACAAAATGCAC	0.393000													9	195					0	0	0.387290	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64607885	64607885	+	Missense_Mutation	SNP	T	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr3:64607885T>C	uc003dmg.2	-	18	2707	c.2675A>G	c.(2674-2676)AAA>AGA	p.K892R	ADAMTS9_uc011bfo.1_Missense_Mutation_p.K864R|ADAMTS9_uc003dmh.1_Missense_Mutation_p.K721R|ADAMTS9_uc003dmk.1_Missense_Mutation_p.K892R	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	892	TSP type-1 2.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTGGCAGGGTTTACTGCATGC	0.363000													28	21					0	0	0.740014	0	0
Unknown	0	broad.mit.edu	37	4	88814665	88814665	+	Missense_Mutation	SNP	A	C	C	rs17008718	by1000genomes	TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr4:88814665A>C	uc010iko.1	+	4	1292	c.1292A>C	c.(1291-1293)GAA>GCA	p.E431A						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GAAAGCAAGGAAAAGTTTGAG	0.448000													3	24					0	0	0.115264	0	0
LOC441089	441089	broad.mit.edu	37	5	79647590	79647590	+	RNA	SNP	C	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr5:79647590C>T	uc010jaj.1	-	1		c.196G>A				NR_003665				Homo sapiens CRSP8 pseudogene (LOC441089), non-coding RNA.												0						CCCGGTTGACCGAATGTAAGT	0.547000													7	97					0	0	0.307466	0	0
HK3	3101	broad.mit.edu	37	5	176310845	176310845	+	Missense_Mutation	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr5:176310845A>G	uc003mfa.2	-	15	2071	c.1979T>C	c.(1978-1980)ATT>ACT	p.I660T	HK3_uc003mez.2_Missense_Mutation_p.I216T	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	660	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GTCATTGACAATGGCAACCAC	0.582000													11	86					0	0	0.361761	0	0
ATXN1	6310	broad.mit.edu	37	6	16327718	16327718	+	Missense_Mutation	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr6:16327718G>A	uc003nbt.2	-	8	1795	c.824C>T	c.(823-825)ACG>ATG	p.T275M	ATXN1_uc010jpi.2_Missense_Mutation_p.T275M|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	275					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TGGGATCATCGTCTGGTGGGG	0.652000													9	17					0	0	0.387290	0	0
HLA-J	3137	broad.mit.edu	37	6	29977145	29977145	+	Splice_Site	SNP	G	C	C	rs356969		TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr6:29977145G>C	uc003rtl.3	+	4	692	c.330_splice	c.e4+1	p.K110_splice	HLA-G_uc011dmb.1_Intron|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_Splice_Site|HLA-J_uc003nov.3_Intron					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						GCTTGTAAAGGTGAGACCCTG	0.512000													4	43					0	0	0.150653	0	0
SLC35B2	347734	broad.mit.edu	37	6	44224548	44224548	+	Missense_Mutation	SNP	G	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr6:44224548G>C	uc003oxd.2	-	2	215	c.79C>G	c.(79-81)CCT>GCT	p.P27A	SLC35B2_uc011dvt.1_5'UTR|SLC35B2_uc011dvu.1_Intron	NM_178148	NP_835361	Q8TB61	S35B2_HUMAN	solute carrier family 35, member B2	27					positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity|signal transducer activity			ovary(1)|central_nervous_system(1)	2	all_cancers(18;2e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GACTCCGGAGGGGCTTCGGGA	0.582000													6	72					0	0	0.217242	0	0
THEMIS	387357	broad.mit.edu	37	6	128134187	128134187	+	Silent	SNP	T	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr6:128134187T>C	uc003qbi.2	-	5	1918	c.1599A>G	c.(1597-1599)GAA>GAG	p.E533E	THEMIS_uc010kfa.2_Silent_p.E436E|THEMIS_uc011ebt.1_Silent_p.E533E|THEMIS_uc010kfb.2_Silent_p.E498E	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	533					negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						CAGTGATCTCTTCTACCAGAG	0.468000													45	58					0	0	0.859065	0	0
EPPK1	83481	broad.mit.edu	37	8	144945118	144945118	+	Missense_Mutation	SNP	G	T	T			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr8:144945118G>T	uc003zaa.1	-	1	2317	c.2304C>A	c.(2302-2304)TTC>TTA	p.F768L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	768	Plectin 15.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGTTGGGGTCGAAGAAGCCCT	0.632000													5	102					1.23904e-05	1.2841e-05	0.184627	1	0
FAM75A2	642265	broad.mit.edu	37	9	39887032	39887032	+	Missense_Mutation	SNP	C	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr9:39887032C>G	uc004abp.2	+	3	303	c.274C>G	c.(274-276)CAG>GAG	p.Q92E		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	92						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GAGAGGCCTGCAGGAGACTTC	0.617000													3	9					0	0	0.115264	0	0
STOM	2040	broad.mit.edu	37	9	124111437	124111437	+	Missense_Mutation	SNP	C	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr9:124111437C>A	uc004blh.2	-	5	566	c.486G>T	c.(484-486)CAG>CAT	p.Q162H	STOM_uc011lyk.1_Missense_Mutation_p.Q111H|STOM_uc004bli.2_Intron	NM_004099	NP_004090	P27105	STOM_HUMAN	stomatin isoform a	162	Cytoplasmic (Potential).				protein homooligomerization	cytoskeleton|integral to plasma membrane|melanosome|membrane raft	protein binding				0				OV - Ovarian serous cystadenocarcinoma(323;0.00107)|GBM - Glioblastoma multiforme(294;0.0137)		CAGAGAGGATCTGAGAAAGAT	0.478000													17	10					5.3912e-06	5.69072e-06	0.539581	1	0
BAT2L1	84726	broad.mit.edu	37	9	134349974	134349974	+	Missense_Mutation	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr9:134349974A>G	uc004can.3	+	15	2513	c.2458A>G	c.(2458-2460)ATC>GTC	p.I820V	BAT2L1_uc010mzj.1_Missense_Mutation_p.I403V|BAT2L1_uc004cao.3_Missense_Mutation_p.I178V	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	820							protein binding				0						TGACAGCTGTATCTCTTCTCA	0.522000													5	25					0	0	0.184627	0	0
HUWE1	10075	broad.mit.edu	37	X	53618082	53618082	+	Missense_Mutation	SNP	G	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chrX:53618082G>C	uc004dsp.2	-	34	4375	c.3973C>G	c.(3973-3975)CTC>GTC	p.L1325V	HUWE1_uc004dsn.2_Missense_Mutation_p.L150V	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1325	UBA.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ATGTCCATGAGCTACATAAAG	0.433000													14	18					0	0	0.457914	0	0
ACRC	93953	broad.mit.edu	37	X	70824013	70824013	+	Missense_Mutation	SNP	G	A	A			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chrX:70824013G>A	uc004eae.2	+	8	1387	c.886G>A	c.(886-888)GAC>AAC	p.D296N	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	296	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					GGAAGCTTCCGACGACAGCAG	0.527000													111	136					0	0	0.870114	0	0
UPRT	139596	broad.mit.edu	37	X	74519578	74519578	+	Missense_Mutation	SNP	A	G	G			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chrX:74519578A>G	uc004ecb.1	+	5	700	c.571A>G	c.(571-573)ATG>GTG	p.M191V	UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Missense_Mutation_p.M191V|UPRT_uc004ece.1_Missense_Mutation_p.M55V	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	191					nucleoside metabolic process	cytoplasm|nucleus					0						AGGTGAGGCAATGGAACAAGG	0.383000													6	74					0	0	0.217242	0	0
AMOT	154796	broad.mit.edu	37	X	112058788	112058788	+	Missense_Mutation	SNP	T	C	C			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chrX:112058788T>C	uc004epr.2	-	2	1190	c.1190A>G	c.(1189-1191)CAG>CGG	p.Q397R	AMOT_uc004eps.2_5'UTR|AMOT_uc004ept.1_Missense_Mutation_p.Q397R	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	397					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						ctgtggctgctgctgctgctg	0.328000													4	48					0	0	0.184627	0	0
PDZD3	79849	broad.mit.edu	37	11	119058335	119058335	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr11:119058335delC	uc001pwb.2	+	4	1305	c.781delC	c.(781-783)CCCfs	p.P261fs	PDZD3_uc001pvy.2_Frame_Shift_Del_p.P195fs|PDZD3_uc001pvz.2_Frame_Shift_Del_p.P195fs|PDZD3_uc010rzd.1_Frame_Shift_Del_p.P182fs|PDZD3_uc001pwa.2_5'UTR			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	261	PDZ 2.				cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		GGCAGGGGTGCCCCCCGGGGC	0.552													3	5	---	---	---	---					
FUS	2521	broad.mit.edu	37	16	31200459	31200461	+	In_Frame_Del	DEL	ACA	-	-			TCGA-EZ-7264-01A-11D-2024-08	TCGA-EZ-7264-10A-01D-2024-08									Somatic	Phase_I	Capture				Illumina GAIIx	00493087-9d9d-40ca-86d5-936f1b951c93	d5dfac45-4aff-481d-9117-807ed47b7b10	g.chr16:31200459_31200461delACA	uc002ebf.2	+	9	931_933	c.848_850delACA	c.(847-852)GACAAC>GAC	p.N285del	FUS_uc002ebh.2_In_Frame_Del_p.N284del|FUS_uc002ebg.2_In_Frame_Del_p.N80del|FUS_uc002ebi.2_In_Frame_Del_p.N286del|FUS_uc002ebj.2_In_Frame_Del_p.N81del|FUS_uc010caj.1_Intron	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	285	RRM.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		GATAATTCAGACAACAACACCAT	0.374			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								46	185	---	---	---	---					
