Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF9	400818	broad.mit.edu	37	1	144220816	144220816	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr1:144220816A>G	uc010oxr.1	+	19	2193	c.2189A>G	c.(2188-2190)GAG>GGG	p.E730G	NBPF9_uc010oxn.1_Missense_Mutation_p.E601G|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxt.1_Missense_Mutation_p.E518G|NBPF9_uc001ekg.1_Missense_Mutation_p.E30G|NBPF9_uc001ekk.1_Missense_Mutation_p.E274G|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.E30G|uc010oxz.1_Missense_Mutation_p.E518G	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	703	NBPF 5.					cytoplasm					0						GATGAGAAAGAGCCTGAAGTC	0.483													3	116					0	0	0.184627	0	0
DENND4B	9909	broad.mit.edu	37	1	153907309	153907309	+	Silent	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr1:153907309C>T	uc001fdd.1	-	18	3101	c.2700G>A	c.(2698-2700)CAG>CAA	p.Q900Q	uc001fdc.1_RNA	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	900	Gln-rich.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			gctgctgttgctgctgctgct	0.468													4	67					0	0	0.150653	0	0
LOXL4	84171	broad.mit.edu	37	10	100012144	100012144	+	Silent	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr10:100012144G>A	uc001kpa.1	-	12	2068	c.1917C>T	c.(1915-1917)GCC>GCT	p.A639A		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	639	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		GACAGAAGCTGGCCTTGTGCC	0.532													22	203					0	0	0.099896	0	0
NR1H3	10062	broad.mit.edu	37	11	47281984	47281984	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr11:47281984A>G	uc009ylm.2	+	4	478	c.257A>G	c.(256-258)AAG>AGG	p.K86R	NR1H3_uc009yll.1_Missense_Mutation_p.K92R|NR1H3_uc010rhk.1_Missense_Mutation_p.K92R|NR1H3_uc001nek.2_Missense_Mutation_p.K41R|NR1H3_uc001nej.2_Missense_Mutation_p.K86R|NR1H3_uc001nel.2_Missense_Mutation_p.K41R|NR1H3_uc001nen.3_Missense_Mutation_p.K86R|NR1H3_uc001nem.2_Missense_Mutation_p.K86R|NR1H3_uc001nep.2_5'UTR	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	86					apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						AAGCGGAAAAAGGGGCCAGCC	0.567													4	103					0	0	0.184627	0	0
FNBP4	23360	broad.mit.edu	37	11	47755624	47755624	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr11:47755624T>C	uc009ylv.2	-	10	1792	c.1639A>G	c.(1639-1641)AAT>GAT	p.N547D	FNBP4_uc001ngj.2_Missense_Mutation_p.N454D|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	547										ovary(1)	1						GATTGTCTATTAATGCCTAGA	0.328													21	38					0	0	0.108266	0	0
RBM4B	83759	broad.mit.edu	37	11	66436387	66436387	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr11:66436387A>G	uc001oja.2	-	2	1457	c.788T>C	c.(787-789)CTC>CCC	p.L263P	RBM4B_uc001ojb.2_Missense_Mutation_p.L263P	NM_031492	NP_113680	Q9BQ04	RBM4B_HUMAN	RNA binding motif protein 4B	263	Interaction with TNPO3 (By similarity).				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|RNA splicing	nucleolus	nucleotide binding|RNA binding|zinc ion binding				0						AGTAGAGTTGAGGTGGCTGGT	0.562													3	141					0	0	0.184627	0	0
PCF11	51585	broad.mit.edu	37	11	82877743	82877743	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr11:82877743G>A	uc001ozx.3	+	5	2149	c.1804G>A	c.(1804-1806)GAA>AAA	p.E602K	PCF11_uc010rsu.1_Missense_Mutation_p.E602K	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	602					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						ATCTGGTTGGGAAGAAAATAA	0.318													27	46					0	0	0.214465	0	0
MLL	4297	broad.mit.edu	37	11	118390456	118390456	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr11:118390456A>G	uc001pta.2	+	32	11284	c.11261A>G	c.(11260-11262)AAT>AGT	p.N3754S	MLL_uc001ptb.2_Missense_Mutation_p.N3757S	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3754					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAGGAGGCCAATGAACCCCCC	0.507			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								4	116					0	0	0.021553	0	0
DBX2	440097	broad.mit.edu	37	12	45410365	45410365	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr12:45410365G>A	uc001rok.1	-	4	896	c.724C>T	c.(724-726)CGG>TGG	p.R242W		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	242	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		TTGGAATTCCGCCATTTCATC	0.403													13	140					0	0	0.160694	0	0
LOC284232	284232	broad.mit.edu	37	13	19419995	19419995	+	RNA	SNP	C	G	G	rs78291036	by1000genomes	TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr13:19419995C>G	uc010tcj.1	-	1		c.26115G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAACTAAGAACAGTTAGATAA	0.294													3	41					0	0	0.184627	0	0
RNF17	56163	broad.mit.edu	37	13	25428134	25428134	+	Silent	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr13:25428134G>A	uc001upr.2	+	25	3503	c.3462G>A	c.(3460-3462)CAG>CAA	p.Q1154Q	RNF17_uc010tdd.1_Silent_p.Q1013Q|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.Q1150Q|RNF17_uc001ups.2_Silent_p.Q1093Q|RNF17_uc010aac.2_Silent_p.Q352Q|RNF17_uc010aad.2_Silent_p.Q206Q	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1154					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TCAGTGAACAGAAAGTGTCTG	0.403													26	34					0	0	0.163468	0	0
CCDC70	83446	broad.mit.edu	37	13	52439604	52439604	+	Silent	SNP	G	A	A	rs112168960		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr13:52439604G>A	uc001vfu.3	+	2	386	c.90G>A	c.(88-90)GCG>GCA	p.A30A	uc010tgr.1_RNA	NM_031290	NP_112580	Q6NSX1	CCD70_HUMAN	coiled-coil domain containing 70 precursor	30						extracellular region|plasma membrane					0		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.0107)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;2.4e-08)		GGTCCCTGGCGGCATCCTCTC	0.507													14	126					0	0	0.189662	0	0
CDKN3	1033	broad.mit.edu	37	14	54884631	54884631	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr14:54884631C>T	uc001xap.2	+	7	628	c.514C>T	c.(514-516)CGA>TGA	p.R172*	CDKN3_uc001xar.2_Nonsense_Mutation_p.R132*|CDKN3_uc001xaq.2_Nonsense_Mutation_p.R171*|CDKN3_uc001xas.1_Intron|CDKN3_uc010aoj.1_RNA	NM_005192	NP_005183	Q16667	CDKN3_HUMAN	cyclin-dependent kinase inhibitor 3 isoform 1	172					cell cycle arrest|G1/S transition of mitotic cell cycle|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity	perinuclear region of cytoplasm	protein binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0						AGACAGCCTGCGAGACCTAAG	0.458													9	15					0	0	0.105934	0	0
CLMN	79789	broad.mit.edu	37	14	95670323	95670323	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr14:95670323C>T	uc001yef.2	-	9	1479	c.1363G>A	c.(1363-1365)GAA>AAA	p.E455K		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	455						integral to membrane	actin binding				0				Epithelial(152;0.193)		CTCAATGATTCCTTTGCCACT	0.468													14	37					0	0	0.175082	0	0
HDC	3067	broad.mit.edu	37	15	50534698	50534698	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr15:50534698C>T	uc001zxz.2	-	12	1854	c.1748G>A	c.(1747-1749)CGC>CAC	p.R583H	HDC_uc001zxy.2_Missense_Mutation_p.R326H|HDC_uc010uff.1_Missense_Mutation_p.R550H	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	583					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	ACTGAGGGAGCGCACCGTCTT	0.542													91	173					0	0	0.139131	0	0
GGT6	124975	broad.mit.edu	37	17	4463042	4463042	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr17:4463042C>T	uc002fyd.3	-	2	214	c.154G>A	c.(154-156)GGG>AGG	p.G52R	GGT6_uc010vsb.1_5'UTR|GGT6_uc002fyc.3_Missense_Mutation_p.G52R|GGT6_uc010vsc.1_Missense_Mutation_p.G52R	NM_001122890	NP_001116362	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6 isoform a	52	Cytoplasmic (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			skin(1)	1						CCGGGCAGCCCGCCAGCCTTG	0.652													7	41					0	0	0.058154	0	0
KRT35	3886	broad.mit.edu	37	17	39635168	39635168	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr17:39635168C>T	uc002hws.2	-	4	834	c.791G>A	c.(790-792)CGA>CAA	p.R264Q		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	264	Rod.|Coil 2.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				CTCCAGAACTCGGTTCAGGTC	0.552													6	77					0	0	0.038147	0	0
STAT5B	6777	broad.mit.edu	37	17	40384082	40384082	+	Missense_Mutation	SNP	A	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr17:40384082A>T	uc002hzh.2	-	2	233	c.64T>A	c.(64-66)TAT>AAT	p.Y22N	STAT5B_uc002hzi.3_Missense_Mutation_p.Y22N	NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	22					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	TGCTGGCCATATAACGCTTGC	0.443													5	98					0	0	0.184627	0	0
DDX5	1655	broad.mit.edu	37	17	62498337	62498337	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr17:62498337G>A	uc002jek.2	-	10	1346	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S	DDX5_uc010deh.2_Missense_Mutation_p.P367S|DDX5_uc002jej.2_Missense_Mutation_p.P262S|DDX5_uc010wqa.1_Missense_Mutation_p.P288S	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	367	Helicase C-terminal.				cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CCCATGGCAGGCCACCTAAGT	0.398			T	ETV4	prostate								3	33					0	0	0.115264	0	0
NOL4	8715	broad.mit.edu	37	18	31538334	31538334	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr18:31538334C>T	uc010dmi.2	-	7	1334	c.1105G>A	c.(1105-1107)GTA>ATA	p.V369I	NOL4_uc010xbs.1_Missense_Mutation_p.V84I|NOL4_uc002kxr.3_Missense_Mutation_p.V205I|NOL4_uc010xbt.1_Missense_Mutation_p.V295I|NOL4_uc010dmh.2_Missense_Mutation_p.V295I|NOL4_uc010xbu.1_Missense_Mutation_p.V369I|NOL4_uc002kxt.3_Missense_Mutation_p.V369I|NOL4_uc010xbv.1_Missense_Mutation_p.V118I|NOL4_uc010xbw.1_Missense_Mutation_p.V255I	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	369						nucleolus	RNA binding			ovary(3)	3						CCTCGGTCTACACTCTCATTT	0.448													54	127					0	0	0.139131	0	0
TMEM146	257062	broad.mit.edu	37	19	5727283	5727283	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr19:5727283G>A	uc002mda.2	+	3	192	c.131G>A	c.(130-132)CGC>CAC	p.R44H	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	44	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CTCTAGGACCGCCTGTATTTT	0.274													6	79					0	0	0.069234	0	0
PNMAL2	57469	broad.mit.edu	37	19	46998156	46998156	+	Silent	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr19:46998156G>A	uc002pes.2	-	1	1014	c.567C>T	c.(565-567)CCC>CCT	p.P189P	uc002peu.1_Silent_p.A89A	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	189										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		CACTCCTCGCGGGAGCAGACG	0.647													3	39					0	0	0.115264	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418													3	78					0	0	0.150653	0	0
BIRC8	112401	broad.mit.edu	37	19	53793157	53793157	+	Silent	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr19:53793157C>T	uc002qbk.2	-	1	1719	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	157					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TAGTGTCTTTCTGAGCGCTCA	0.408													3	52					0	0	0.150653	0	0
FAM123C	205147	broad.mit.edu	37	2	131521709	131521709	+	Silent	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr2:131521709C>T	uc002trw.2	+	2	2254	c.2064C>T	c.(2062-2064)AAC>AAT	p.N688N	FAM123C_uc010fmv.2_Silent_p.N688N|FAM123C_uc010fms.1_Silent_p.N688N|FAM123C_uc010fmt.1_Silent_p.N688N|FAM123C_uc010fmu.1_Silent_p.N688N	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	688										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		TCAGCTCAAACGAACAGCCCC	0.652													10	6					0	0	0.080935	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								32	74					0	0	0.214465	0	0
NGEF	25791	broad.mit.edu	37	2	233757683	233757683	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr2:233757683G>A	uc002vts.2	-	7	1315	c.1067C>T	c.(1066-1068)GCG>GTG	p.A356V	NGEF_uc010zmm.1_Missense_Mutation_p.A79V|NGEF_uc010fyg.1_Missense_Mutation_p.A264V	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	356	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GTGGTCGGCCGCATAACGGTA	0.562													4	162					0	0	0.150653	0	0
SLMO2	51012	broad.mit.edu	37	20	57613539	57613539	+	Silent	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr20:57613539C>T	uc002yam.2	-	2	299	c.183G>A	c.(181-183)CTG>CTA	p.L61L	SLMO2_uc010zzv.1_Silent_p.L61L	NM_016045	NP_057129	Q9Y3B1	SLMO2_HUMAN	slowmo homolog 2	61	PRELI/MSF1.									skin(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)			CAATGGAAGGCAGTCCCCACT	0.443													5	105					0	0	0.029380	0	0
SETMAR	6419	broad.mit.edu	37	3	4358185	4358185	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:4358185A>G	uc011asp.1	+	3	1377	c.1310A>G	c.(1309-1311)AAT>AGT	p.N437S	SUMF1_uc003bps.1_Intron|SETMAR_uc003bpy.3_Missense_Mutation_p.N159S|SETMAR_uc011asq.1_Missense_Mutation_p.N285S|SETMAR_uc011asr.1_Missense_Mutation_p.N181S|SETMAR_uc010hbx.2_Missense_Mutation_p.N232S	NM_006515	NP_006506	Q53H47	SETMR_HUMAN	SET domain and mariner transposase fusion	424	Mariner transposase Hsmar1.|H-T-H motif.				DNA integration|DNA repair|transposition, DNA-mediated	chromosome|nucleus	DNA binding|endonuclease activity|histone-lysine N-methyltransferase activity|transposase activity|zinc ion binding			ovary(1)	1		Melanoma(143;0.0657)		Epithelial(13;0.0025)|OV - Ovarian serous cystadenocarcinoma(96;0.011)|all cancers(10;0.0114)		gaagaactcaatgtcaaccat	0								Chromatin_Structure|Direct_reversal_of_damage					6	13					0	0	0.029380	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443													3	119					0	0	0.115264	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448													3	117					0	0	0.115264	0	0
SLC9A10	285335	broad.mit.edu	37	3	111898484	111898484	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:111898484G>A	uc003dyu.2	-	23	3035	c.2813C>T	c.(2812-2814)CCG>CTG	p.P938L	SLC9A10_uc011bhu.1_Missense_Mutation_p.P201L|SLC9A10_uc010hqc.2_Missense_Mutation_p.P890L	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	938	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GTCAATTATCGGAAAATCTTT	0.358													4	43					0	0	0.150653	0	0
CLDN16	10686	broad.mit.edu	37	3	190120187	190120187	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:190120187G>A	uc003fsi.2	+	2	454	c.386G>A	c.(385-387)CGC>CAC	p.R129H	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	129	Extracellular (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		GATGGGATTCGCACCTGTGAT	0.488													21	161					0	0	0.108266	0	0
LOC220729	220729	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	G	G	rs144273946	by1000genomes	TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr3:197348674A>G	uc011bug.1	-	4		c.417T>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						GGCTCTGTCCACCAAATGCAC	0.478													4	114					0	0	0.021553	0	0
DKK2	27123	broad.mit.edu	37	4	107956552	107956552	+	Missense_Mutation	SNP	C	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr4:107956552C>G	uc003hyi.2	-	1	902	c.197G>C	c.(196-198)AGT>ACT	p.S66T	DKK2_uc010ilw.1_Intron|DKK2_uc003hyj.1_Missense_Mutation_p.S66T	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	66					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		GCCCTTCTTACTGCCGCCGAA	0.577													4	74					0	0	0.150653	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631972	156631972	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr4:156631972A>G	uc003iov.2	+	7	1191	c.655A>G	c.(655-657)ATA>GTA	p.I219V	GUCY1A3_uc003iou.2_Missense_Mutation_p.I219V|GUCY1A3_uc010iqc.2_Missense_Mutation_p.I219V|GUCY1A3_uc003iow.2_Missense_Mutation_p.I219V|GUCY1A3_uc010iqd.2_Missense_Mutation_p.I218V|GUCY1A3_uc003iox.2_Missense_Mutation_p.I219V|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.I219V|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.I219V	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	219					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TCCCGGCATCATAAAGGCAGC	0.458													38	84					0	0	0.139131	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537004	140537004	+	Silent	SNP	C	T	T	rs246697		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr5:140537004C>T	uc003lis.2	+	1	1425	c.1425C>T	c.(1423-1425)GCC>GCT	p.A475A		NR_001280				SubName: Full=Protocadherin-psi1;												0						GTGTCAGCGCCACAGACAGAG	0.642													4	250					0	0	0.184627	0	0
PHF3	23469	broad.mit.edu	37	6	64394227	64394227	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr6:64394227C>T	uc003pep.1	+	3	630	c.604C>T	c.(604-606)CGA>TGA	p.R202*	PHF3_uc010kaf.1_Nonsense_Mutation_p.R202*|PHF3_uc003pem.2_Nonsense_Mutation_p.R155*|PHF3_uc010kag.1_Nonsense_Mutation_p.R114*|PHF3_uc010kah.1_Nonsense_Mutation_p.R16*|PHF3_uc003pen.2_Nonsense_Mutation_p.R114*|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Nonsense_Mutation_p.R202*	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	202					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AAGGTGCAGCCGAAATAGCGG	0.403													34	75					0	0	0.183431	0	0
DPY19L1	23333	broad.mit.edu	37	7	34977700	34977700	+	Missense_Mutation	SNP	T	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr7:34977700T>A	uc003tem.3	-	21	1922	c.1777A>T	c.(1777-1779)AGT>TGT	p.S593C	DPY19L1_uc003tel.1_RNA	NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	593						integral to membrane					0						GCTTTCCGACTATACATTGAG	0.328													18	17					0	0	0.204396	0	0
FLNC	2318	broad.mit.edu	37	7	128480693	128480693	+	Silent	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr7:128480693G>A	uc003vnz.3	+	10	1850	c.1641G>A	c.(1639-1641)GTG>GTA	p.V547V	FLNC_uc003voa.3_Silent_p.V547V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	547	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AGTATGTGGTGACCATCACGT	0.637													6	472					0	0	0.038147	0	0
TSPAN33	340348	broad.mit.edu	37	7	128804343	128804343	+	Missense_Mutation	SNP	A	G	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr7:128804343A>G	uc003vop.1	+	5	621	c.392A>G	c.(391-393)AAC>AGC	p.N131S	TSPAN33_uc003voq.1_5'Flank	NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	131	Extracellular (Potential).					integral to membrane				ovary(1)	1						GAGATCATCAACAATGCCATT	0.493											OREG0018304	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	120	168					0	0	0.139131	0	0
TBXAS1	6916	broad.mit.edu	37	7	139529240	139529240	+	Silent	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr7:139529240G>A	uc011kqv.1	+	1	218	c.54G>A	c.(52-54)ACG>ACA	p.T18T	TBXAS1_uc003vvh.2_Silent_p.T18T|TBXAS1_uc010lne.2_Intron|TBXAS1_uc011kqu.1_Silent_p.T18T|TBXAS1_uc003vvi.2_Silent_p.T18T|TBXAS1_uc003vvj.2_Silent_p.T18T|TBXAS1_uc011kqw.1_5'UTR|TBXAS1_uc011kqx.1_Silent_p.T18T	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	17	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					CCATGGTGACGGTGGCCCTGT	0.572													3	59					0	0	0.021553	0	0
PARP12	64761	broad.mit.edu	37	7	139724493	139724493	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr7:139724493G>A	uc003vvl.1	-	12	2847	c.1973C>T	c.(1972-1974)CCC>CTC	p.P658L	PARP12_uc003vvk.1_Missense_Mutation_p.P444L|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	658	PARP catalytic.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					AAAGATGGAGGGGTCGGACAC	0.577													5	184					0	0	0.021553	0	0
CCIN	881	broad.mit.edu	37	9	36170121	36170121	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr9:36170121C>T	uc003zzb.3	+	1	733	c.622C>T	c.(622-624)CGG>TGG	p.R208W		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	208	BACK.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			GGTGTACTTCCGGAAGGAGGA	0.488													17	32					0	0	0.062417	0	0
ALDH1A1	216	broad.mit.edu	37	9	75520934	75520934	+	Missense_Mutation	SNP	C	T	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr9:75520934C>T	uc004ajd.2	-	12	1426	c.1373G>A	c.(1372-1374)GGC>GAC	p.G458D	ALDH1A1_uc011lsh.1_Missense_Mutation_p.G379D|ALDH1A1_uc011lsg.1_Missense_Mutation_p.G284D	NM_000689	NP_000680	P00352	AL1A1_HUMAN	aldehyde dehydrogenase 1A1	458					cellular aldehyde metabolic process|ethanol oxidation|xenobiotic metabolic process	cytosol	aldehyde dehydrogenase (NAD) activity|androgen binding|Ras GTPase activator activity|retinal dehydrogenase activity			ovary(3)|lung(1)	4					NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	ACTTACCACGCCATAGCAATT	0.343													14	39					0	0	0.146539	0	0
CXorf22	170063	broad.mit.edu	37	X	35966455	35966455	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:35966455G>A	uc004ddj.2	+	4	601	c.542G>A	c.(541-543)GGC>GAC	p.G181D	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	181										large_intestine(1)|lung(1)|ovary(1)	3						GAATACCACGGCCAATTACCC	0.413													60	116					0	0	0.139131	0	0
CXorf22	170063	broad.mit.edu	37	X	35993797	35993797	+	Missense_Mutation	SNP	C	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:35993797C>A	uc004ddj.2	+	15	2539	c.2480C>A	c.(2479-2481)ACC>AAC	p.T827N	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	827										large_intestine(1)|lung(1)|ovary(1)	3						AGGTCTTTCACCTTTACAGTG	0.383													38	57					1.62957e-23	1.74597e-23	0.104719	1	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637													4	106					0	0	0.184627	0	0
DDX3X	1654	broad.mit.edu	37	X	41202025	41202025	+	Missense_Mutation	SNP	T	C	C			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:41202025T>C	uc004dfe.2	+	6	1334	c.479T>C	c.(478-480)TTT>TCT	p.F160S	DDX3X_uc010nhf.1_Missense_Mutation_p.F144S|DDX3X_uc004dff.2_Missense_Mutation_p.F160S|DDX3X_uc011mkq.1_Missense_Mutation_p.F144S|DDX3X_uc011mkr.1_Missense_Mutation_p.F160S|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	160					interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						GGGATTAATTTTGAGAAATAC	0.368										HNSCC(61;0.18)			6	92					0	0	0.021553	0	0
SSX5	6758	broad.mit.edu	37	X	48053622	48053622	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:48053622G>A	uc004dja.1	-	4	276	c.223C>T	c.(223-225)CGG>TGG	p.R75W	SSX5_uc004diz.1_Missense_Mutation_p.R116W	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	75	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCTGCGACCCGTTTATTACGC	0.433													5	206					0	0	0.021553	0	0
GRIA3	2892	broad.mit.edu	37	X	122598965	122598965	+	Splice_Site	SNP	T	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:122598965T>A	uc004etq.3	+	14	2617	c.2324_splice	c.e14+2	p.G775_splice	GRIA3_uc004etr.3_Splice_Site_p.G775_splice|GRIA3_uc004ets.3_Splice_Site	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform						glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	AGCATTAAGGTGGGTGGAATA	0.393													8	109					0	0	0.069234	0	0
ATP2B3	492	broad.mit.edu	37	X	152807342	152807342	+	Missense_Mutation	SNP	G	A	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chrX:152807342G>A	uc004fht.1	+	3	748	c.622G>A	c.(622-624)GTG>ATG	p.V208M	ATP2B3_uc004fhs.1_Missense_Mutation_p.V208M	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	208	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGTCCCCGTGGCTGCGCT	0.622													6	147					0	0	0.029380	0	0
SCAF1	58506	broad.mit.edu	37	19	50155567	50155569	+	In_Frame_Del	DEL	AAG	-	-			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr19:50155567_50155569delAAG	uc002poq.2	+	7	2045_2047	c.1921_1923delAAG	c.(1921-1923)AAGdel	p.K645del		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	645	Arg-rich.|Ser-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		TGGCGGCAGCAAGAAGAAGAAGA	0.621													2	4	---	---	---	---					
TSNARE1	203062	broad.mit.edu	37	8	143310866	143310868	+	In_Frame_Del	DEL	GAT	-	-	rs142964918		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	g.chr8:143310866_143310868delGAT	uc003ywk.2	-	13	1637_1639	c.1519_1521delATC	c.(1519-1521)ATCdel	p.I507del	TSNARE1_uc011lju.1_In_Frame_Del_p.I506del|TSNARE1_uc003ywj.2_In_Frame_Del_p.I508del	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	507	Poly-Ile.|Helical; (Potential).				vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CAGAGGTGGCGATGATGATGATG	0.414													7	134	---	---	---	---					
