Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16957414	16957414	+	RNA	SNP	C	T	T	rs2296161	by1000genomes	TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr1:16957414C>T	uc009vov.1	-	1		c.191G>A			CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA|CROCCL1_uc001azg.1_RNA|CROCCL1_uc001azi.1_RNA	NR_026752				Homo sapiens mRNA for FLJ00313 protein.												0						AAGTGCAGGGCGGAGAGAATC	0.706000													4	2					0	0	0.014758	0	0
ESPNP	284729	broad.mit.edu	37	1	17033885	17033885	+	Silent	SNP	C	G	G			TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr1:17033885C>G	uc001azn.1	-	4	594	c.480G>C	c.(478-480)GCG>GCC	p.A160A	ESPNP_uc010ocj.1_3'UTR	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CTTCCAGCTCCGCGCCGTTCA	0.726000													4	11					0	0	0.009096	0	0
ESPNP	284729	broad.mit.edu	37	1	17034140	17034140	+	Missense_Mutation	SNP	C	G	G	rs2988286	by1000genomes	TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr1:17034140C>G	uc001azn.1	-	3	464	c.350G>C	c.(349-351)AGC>ACC	p.S117T	ESPNP_uc010ocj.1_Missense_Mutation_p.S47T	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						GAGCACCTTGCTGTGGCCGCG	0.721000													2	5					0	0	0.115264	0	0
EML5	161436	broad.mit.edu	37	14	89154773	89154773	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr14:89154773T>C	uc001xxg.2	-	19	2770	c.2584A>G	c.(2584-2586)AAA>GAA	p.K862E	EML5_uc001xxh.1_Intron	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	862	WD 14.					cytoplasm|microtubule				ovary(3)	3						GTGTCATTTTTCCCCAGTGTG	0.388000													10	174					0	0	0.080935	0	0
ZNF682	91120	broad.mit.edu	37	19	20117231	20117231	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr19:20117231C>G	uc002noq.2	-	4	1203	c.1080G>C	c.(1078-1080)AAG>AAC	p.K360N	ZNF682_uc002noo.2_Missense_Mutation_p.K328N|ZNF682_uc002nop.2_Missense_Mutation_p.K328N|ZNF682_uc010eck.2_Missense_Mutation_p.K284N	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	360	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TATGAATTACCTTATGTTCAG	0.363000													5	37					0	0	0.014758	0	0
ZNF814	730051	broad.mit.edu	37	19	58385762	58385762	+	Silent	SNP	C	G	G			TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr19:58385762C>G	uc002qqo.2	-	3	1268	c.996G>C	c.(994-996)TCG>TCC	p.S332S	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	332	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						ATTTGCTAAACGATTTCCCAC	0.358000													2	2					0	0	0.115264	0	0
MRPS9	64965	broad.mit.edu	37	2	105708997	105708997	+	Missense_Mutation	SNP	G	A	A	rs147161518	byFrequency	TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr2:105708997G>A	uc002tcn.3	+	8	858	c.790G>A	c.(790-792)GAG>AAG	p.E264K		NM_182640	NP_872578	P82933	RT09_HUMAN	mitochondrial ribosomal protein S9 precursor	264					DNA damage response, detection of DNA damage|translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						ACAGTATGATGAGCAAGGAAT	0.368000													4	62					0	0	0.009096	0	0
LUC7L2	51631	broad.mit.edu	37	7	139094365	139094366	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HT-8558-01A-21D-2395-08	TCGA-HT-8558-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	39730eb2-7516-40fe-9d21-c44df7ac4c82	2c877cd5-7754-43f2-9b8e-d7179110ee18	g.chr7:139094365_139094366delAG	uc003vux.2	+	7	1118_1119	c.744_745delAG	c.(742-747)GAAGAGfs	p.E248fs	LUC7L2_uc011kqs.1_Frame_Shift_Del_p.E245fs|LUC7L2_uc011kqt.1_Frame_Shift_Del_p.E314fs|LUC7L2_uc003vuy.2_Frame_Shift_Del_p.E247fs|LUC7L2_uc003vuz.1_Frame_Shift_Del_p.E195fs|LUC7L2_uc003vva.2_Frame_Shift_Del_p.E195fs	NM_016019	NP_057103	Q9Y383	LC7L2_HUMAN	LUC7-like 2	248_249	Arg/Ser-rich.						enzyme binding|metal ion binding				0	Melanoma(164;0.242)					AACGAAGAGAAGAGAGAGAGAG	0.391													4	9	---	---	---	---					
