Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
CROCC	9696	broad.mit.edu	37	1	17264920	17264920	+	Missense_Mutation	SNP	C	T	T	rs4463721	by1000genomes	TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:17264920C>T	uc001azt.2	+	11	1385	c.1316C>T	c.(1315-1317)GCG>GTG	p.A439V	CROCC_uc009voy.1_Missense_Mutation_p.A142V|CROCC_uc009voz.1_Missense_Mutation_p.A202V|CROCC_uc001azu.2_5'Flank	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	439	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CAGGAGCAGGCGGCCCTGGAG	0.617													5	4	---	---	---	---	PASS
CSMD2	114784	broad.mit.edu	37	1	34102104	34102104	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:34102104G>A	uc001bxn.1	-	30	4734	c.4705C>T	c.(4705-4707)CGG>TGG	p.R1569W	CSMD2_uc001bxm.1_Missense_Mutation_p.R1609W|CSMD2_uc001bxo.1_Missense_Mutation_p.R482W	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1569	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GACCCCACCCGTGTGCCGTTC	0.582													8	80	---	---	---	---	PASS
NFYC	4802	broad.mit.edu	37	1	41218877	41218877	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:41218877G>A	uc001cge.2	+	4	354	c.346G>A	c.(346-348)GAT>AAT	p.D116N	NFYC_uc010ojm.1_Intron|NFYC_uc001cfx.3_Missense_Mutation_p.D116N|NFYC_uc009vwd.2_Missense_Mutation_p.D116N|NFYC_uc001cfz.2_Missense_Mutation_p.D116N|NFYC_uc010ojn.1_Missense_Mutation_p.D78N|NFYC_uc001cfy.3_Missense_Mutation_p.D116N|NFYC_uc001cgc.2_Missense_Mutation_p.D116N|NFYC_uc001cgb.2_Missense_Mutation_p.D116N|NFYC_uc001cgd.3_Missense_Mutation_p.D116N|MIR30E_hsa-mir-30e|MI0000749_5'Flank|uc001cgf.1_5'Flank	NM_001142588	NP_001136060	Q13952	NFYC_HUMAN	nuclear transcription factor Y, gamma isoform 1	116					protein folding|regulation of transcription from RNA polymerase II promoter	CCAAT-binding factor complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			breast(2)|kidney(1)	3	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.72e-17)			TTTTCTCATCGATATTGTTCC	0.423													19	69	---	---	---	---	PASS
TMEM167B	56900	broad.mit.edu	37	1	109637041	109637041	+	Missense_Mutation	SNP	G	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:109637041G>T	uc001dwn.2	+	3	237	c.145G>T	c.(145-147)GCT>TCT	p.A49S	TMEM167B_uc009weu.2_RNA	NM_020141	NP_064526	Q9NRX6	KISHB_HUMAN	transmembrane protein 167B precursor	49	Extracellular (Potential).					Golgi membrane|integral to membrane					0						CCTGCTAGCCGCTGTGATTGG	0.448													16	114	---	---	---	---	PASS
TP53BP2	7159	broad.mit.edu	37	1	223971997	223971997	+	Silent	SNP	G	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:223971997G>T	uc010pvb.1	-	17	3475	c.3183C>A	c.(3181-3183)GGC>GGA	p.G1061G	TP53BP2_uc001hod.2_Silent_p.G932G|TP53BP2_uc010puz.1_Silent_p.G294G|TP53BP2_uc010pva.1_Silent_p.G700G	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	1055	Mediates interaction with APC2.				apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TATTCATTATGCCCATCTTCT	0.378													14	139	---	---	---	---	PASS
KIF26B	55083	broad.mit.edu	37	1	245849237	245849237	+	Silent	SNP	C	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr1:245849237C>A	uc001ibf.1	+	12	3392	c.2952C>A	c.(2950-2952)TCC>TCA	p.S984S	KIF26B_uc001ibg.1_Silent_p.S602S|KIF26B_uc001ibh.1_Silent_p.S226S	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	984					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			ATAATGGGTCCGAAGGTCAGC	0.622													4	25	---	---	---	---	PASS
CEP68	23177	broad.mit.edu	37	2	65296798	65296798	+	Missense_Mutation	SNP	G	A	A	rs7572857	byFrequency	TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:65296798G>A	uc002sdl.3	+	2	434	c.220G>A	c.(220-222)GGC>AGC	p.G74S	CEP68_uc002sdj.2_Missense_Mutation_p.G74S|CEP68_uc010yqb.1_Missense_Mutation_p.G74S|CEP68_uc002sdk.3_Missense_Mutation_p.G74S|CEP68_uc010yqc.1_Missense_Mutation_p.G74S|CEP68_uc010yqd.1_Missense_Mutation_p.G74S	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	74					centrosome organization	centrosome				skin(1)	1						TGACCCTGGCGGCCCCTCTAG	0.647													7	60	---	---	---	---	PASS
LOC150776	150776	broad.mit.edu	37	2	132276530	132276530	+	Translation_Start_Site	SNP	C	T	T	rs12052334	by1000genomes	TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:132276530C>T	uc002tsz.3	+	1	238	c.-209C>T	c.(-211--207)GACGC>GATGC		LOC150776_uc002tsy.3_Intron					Homo sapiens cDNA FLJ41352 fis, clone BRAWH2014645.												0						CTCCTCCTGACGCTCAGCAGT	0.532													9	4	---	---	---	---	PASS
SCN7A	6332	broad.mit.edu	37	2	167262940	167262940	+	Missense_Mutation	SNP	T	C	C			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:167262940T>C	uc002udu.1	-	25	4326	c.4199A>G	c.(4198-4200)TAT>TGT	p.Y1400C		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1400	Helical; Name=S5 of repeat IV; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						GGCAAAATTATACATTCCAAA	0.353													22	151	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179406214	179406214	+	Missense_Mutation	SNP	T	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:179406214T>A	uc010zfg.1	-	299	90110	c.89886A>T	c.(89884-89886)CAA>CAT	p.Q29962H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Q23657H|TTN_uc010zfi.1_Missense_Mutation_p.Q23590H|TTN_uc010zfj.1_Missense_Mutation_p.Q23465H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30889							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCCAGTCACTTGGGAGCCAC	0.498													11	30	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179604912	179604912	+	Missense_Mutation	SNP	C	G	G			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:179604912C>G	uc010zfh.1	-	46	12759	c.12535G>C	c.(12535-12537)GTG>CTG	p.V4179L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.V4112L|TTN_uc010zfj.1_Missense_Mutation_p.V3987L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGGGCATCACCACGTTGTCA	0.458													16	137	---	---	---	---	PASS
ADAM23	8745	broad.mit.edu	37	2	207425911	207425911	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr2:207425911G>A	uc002vbq.2	+	12	1452	c.1229G>A	c.(1228-1230)CGC>CAC	p.R410H	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	410	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		GTCTGTTCTCGCACAAGAGGA	0.413													25	65	---	---	---	---	PASS
HDAC11	79885	broad.mit.edu	37	3	13542247	13542247	+	Silent	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr3:13542247C>T	uc003bxy.2	+	6	580	c.447C>T	c.(445-447)GGC>GGT	p.G149G	HDAC11_uc010heb.2_Missense_Mutation_p.A107V|HDAC11_uc011aux.1_Intron|HDAC11_uc003bxz.2_Silent_p.G121G|HDAC11_uc011auy.1_Silent_p.G98G	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	149	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						GCGACCGTGGCGGGGGCTTCT	0.647											OREG0015412	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	7	---	---	---	---	PASS
DLEC1	9940	broad.mit.edu	37	3	38135139	38135139	+	Silent	SNP	T	C	C			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr3:38135139T>C	uc003cho.1	+	12	1821	c.1800T>C	c.(1798-1800)GGT>GGC	p.G600G	DLEC1_uc003chp.1_Silent_p.G600G|DLEC1_uc010hgv.1_Silent_p.G600G|DLEC1_uc003chr.1_5'UTR|DLEC1_uc010hgx.1_5'Flank|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	600					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		ATATTTCTGGTGAAAAAAGCC	0.493													28	93	---	---	---	---	PASS
PSMD6	9861	broad.mit.edu	37	3	63996409	63996409	+	Missense_Mutation	SNP	T	G	G			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr3:63996409T>G	uc003dma.1	-	8	1130	c.1105A>C	c.(1105-1107)ACT>CCT	p.T369P	uc003dly.1_Intron|PSMD6_uc003dlz.1_Missense_Mutation_p.T320P|PSMD6_uc003dmb.1_Missense_Mutation_p.T422P|PSMD6_uc003dmc.1_Missense_Mutation_p.T330P|PSMD6_uc003dmd.1_Missense_Mutation_p.T331P	NM_014814	NP_055629	Q15008	PSMD6_HUMAN	proteasome (prosome, macropain) 26S subunit,	369					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	ATPase activity|protein binding			central_nervous_system(1)|skin(1)	2		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000805)|Kidney(15;0.00188)|KIRC - Kidney renal clear cell carcinoma(15;0.00212)		TTCTTGATAGTTTCTTGGTAC	0.318													12	84	---	---	---	---	PASS
OTUD4	54726	broad.mit.edu	37	4	146058804	146058804	+	Missense_Mutation	SNP	C	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr4:146058804C>A	uc003ika.3	-	21	3066	c.2928G>T	c.(2926-2928)CAG>CAT	p.Q976H	OTUD4_uc003ijz.3_Missense_Mutation_p.Q975H	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	1040							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GATTATAGAACTGCTTGGATC	0.413													47	384	---	---	---	---	PASS
SLC4A9	83697	broad.mit.edu	37	5	139744179	139744179	+	Silent	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr5:139744179C>T	uc003lfm.2	+	11	1727	c.1692C>T	c.(1690-1692)TAC>TAT	p.Y564Y	SLC4A9_uc003lfj.2_Silent_p.Y540Y|SLC4A9_uc011czg.1_Silent_p.Y540Y|SLC4A9_uc003lfl.2_Silent_p.Y540Y|SLC4A9_uc003lfk.2_Silent_p.Y529Y	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	564	Extracellular (Potential).|Membrane (anion exchange).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCTGCCTACGGGTGCCTCT	0.562													5	15	---	---	---	---	PASS
SYNE1	23345	broad.mit.edu	37	6	152558076	152558076	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr6:152558076G>A	uc010kiw.2	-	109	20677	c.20075C>T	c.(20074-20076)TCC>TTC	p.S6692F	SYNE1_uc010kiv.2_Missense_Mutation_p.S1216F|SYNE1_uc003qos.3_Missense_Mutation_p.S1216F|SYNE1_uc003qot.3_Missense_Mutation_p.S6621F|SYNE1_uc003qou.3_Missense_Mutation_p.S6692F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6692	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATCCAGATGGGACCACGTCTA	0.522										HNSCC(10;0.0054)			6	70	---	---	---	---	PASS
OR2AE1	81392	broad.mit.edu	37	7	99474292	99474292	+	Missense_Mutation	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr7:99474292C>T	uc003usc.1	-	1	365	c.365G>A	c.(364-366)CGC>CAC	p.R122H		NM_001005276	NP_001005276	Q8NHA4	O2AE1_HUMAN	olfactory receptor, family 2, subfamily AE,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GGCAACATAGCGGTCATAGGA	0.488													30	82	---	---	---	---	PASS
ZAN	7455	broad.mit.edu	37	7	100348486	100348486	+	Silent	SNP	C	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr7:100348486C>A	uc003uwj.2	+	12	1653	c.1488C>A	c.(1486-1488)GTC>GTA	p.V496V	ZAN_uc003uwk.2_Silent_p.V496V|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	496	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACACCTCCGTCACCGTCCCCT	0.642													7	41	---	---	---	---	PASS
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													4	39	---	---	---	---	PASS
CENPP	401541	broad.mit.edu	37	9	95108042	95108042	+	Missense_Mutation	SNP	G	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr9:95108042G>T	uc004arz.2	+	4	980	c.440G>T	c.(439-441)TGC>TTC	p.C147F	CENPP_uc010mqx.2_Missense_Mutation_p.C35F|CENPP_uc004ary.1_Missense_Mutation_p.C147F	NM_001012267	NP_001012267	Q6IPU0	CENPP_HUMAN	centromere protein P	147					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				ovary(2)	2						CCCACAGAATGCTCAGAATTA	0.289													16	56	---	---	---	---	PASS
KCNT1	57582	broad.mit.edu	37	9	138651633	138651633	+	Silent	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr9:138651633G>A	uc011mdq.1	+	11	1037	c.963G>A	c.(961-963)ACG>ACA	p.T321T	KCNT1_uc011mdr.1_Silent_p.T148T|KCNT1_uc010nbf.2_Silent_p.T276T|KCNT1_uc004cgo.1_Silent_p.T70T	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	321						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GTGACGTCACGCCCAAGATCT	0.642													26	63	---	---	---	---	PASS
DNLZ	728489	broad.mit.edu	37	9	139256535	139256535	+	Missense_Mutation	SNP	T	G	G			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr9:139256535T>G	uc004chf.1	-	3	541	c.466A>C	c.(466-468)ACA>CCA	p.T156P	DNLZ_uc011mdv.1_RNA	NM_001080849	NP_001074318	Q5SXM8	DNLZ_HUMAN	DNL-type zinc finger	156	DNL-type.						metal ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.42e-06)|Epithelial(140;3.3e-06)		GCAGTGGATGTGGGGGCCCCT	0.672													7	9	---	---	---	---	PASS
LSP1	4046	broad.mit.edu	37	11	1904667	1904667	+	Silent	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr11:1904667C>T	uc001lui.2	+	4	550	c.375C>T	c.(373-375)TAC>TAT	p.Y125Y	LSP1_uc001luj.2_Silent_p.Y253Y|LSP1_uc001luk.2_Silent_p.Y63Y|LSP1_uc001lul.2_Silent_p.Y63Y|LSP1_uc001lum.2_Silent_p.Y63Y	NM_002339	NP_002330	P33241	LSP1_HUMAN	lymphocyte-specific protein 1 isoform 1	125					cellular component movement|cellular defense response	actin cytoskeleton|Golgi apparatus|plasma membrane	actin binding|signal transducer activity			large_intestine(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|Lung(200;0.0729)|LUSC - Lung squamous cell carcinoma(625;0.0856)		TGCATGCCTACGAAAAGGAGG	0.537													19	70	---	---	---	---	PASS
SLC15A3	51296	broad.mit.edu	37	11	60714292	60714292	+	Missense_Mutation	SNP	A	C	C			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr11:60714292A>C	uc001nqn.2	-	2	794	c.560T>G	c.(559-561)GTG>GGG	p.V187G	SLC15A3_uc001nqo.2_Missense_Mutation_p.V187G	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	187					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GAGATCCATCACCTGCCATTC	0.592													17	69	---	---	---	---	PASS
CTSC	1075	broad.mit.edu	37	11	88068245	88068245	+	Missense_Mutation	SNP	G	C	C			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr11:88068245G>C	uc001pck.3	-	2	279	c.178C>G	c.(178-180)CAA>GAA	p.Q60E	CTSC_uc001pcl.3_5'UTR|CTSC_uc001pcm.3_Missense_Mutation_p.Q60E|CTSC_uc001pcn.3_Missense_Mutation_p.Q60E	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	60					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTTTTTTCTTGTGGTCCTAAA	0.353													10	81	---	---	---	---	PASS
TSPAN9	10867	broad.mit.edu	37	12	3390977	3390977	+	Silent	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr12:3390977C>T	uc001qlp.2	+	8	789	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_006675	NP_006666	O75954	TSN9_HUMAN	tetraspanin 9	214	Helical; (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00153)|COAD - Colon adenocarcinoma(12;0.0831)			GCATCCTCATCATGCAGGTAA	0.587													16	24	---	---	---	---	PASS
C12orf63	374467	broad.mit.edu	37	12	97137249	97137249	+	Missense_Mutation	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr12:97137249C>T	uc001tet.1	+	20	2642	c.2564C>T	c.(2563-2565)ACG>ATG	p.T855M		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	855										skin(6)|ovary(1)	7						GCAGGGGACACGGAACTGCAG	0.413													10	106	---	---	---	---	PASS
CARS2	79587	broad.mit.edu	37	13	111294811	111294811	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr13:111294811G>A	uc001vrd.2	-	14	1514	c.1474C>T	c.(1474-1476)CGG>TGG	p.R492W		NM_024537	NP_078813	Q9HA77	SYCM_HUMAN	cysteinyl-tRNA synthetase 2, mitochondrial	492					cysteinyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|cysteine-tRNA ligase activity|metal ion binding				0	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.163)		L-Cysteine(DB00151)	TGCCGGAACCGCACCAGCTCG	0.672													3	16	---	---	---	---	PASS
SYNE2	23224	broad.mit.edu	37	14	64580250	64580250	+	Silent	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr14:64580250C>T	uc001xgm.2	+	66	13031	c.12801C>T	c.(12799-12801)GAC>GAT	p.D4267D	SYNE2_uc001xgl.2_Silent_p.D4267D|SYNE2_uc010apy.2_Silent_p.D652D|SYNE2_uc010apz.1_Silent_p.D159D	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4267	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TAAACGCAGACATGCAGCAGG	0.557													11	19	---	---	---	---	PASS
VASH1	22846	broad.mit.edu	37	14	77236395	77236395	+	Splice_Site	SNP	G	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr14:77236395G>T	uc001xst.2	+	2	1328	c.398_splice	c.e2+1	p.Q133_splice	VASH1_uc001xss.2_Splice_Site_p.Q133_splice	NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1						cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		GAGAGCTGCAGTATCCTCTCT	0.597													8	54	---	---	---	---	PASS
ANKRD12	23253	broad.mit.edu	37	18	9221994	9221994	+	Missense_Mutation	SNP	A	G	G			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr18:9221994A>G	uc002knv.2	+	8	1197	c.940A>G	c.(940-942)ACA>GCA	p.T314A	ANKRD12_uc010wzn.1_Missense_Mutation_p.T314A|ANKRD12_uc002knw.2_Missense_Mutation_p.T291A|ANKRD12_uc002knx.2_Missense_Mutation_p.T291A|ANKRD12_uc010dkx.1_5'UTR	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	314						nucleus				ovary(2)|central_nervous_system(1)	3						TGAAAGTTACACAGGTTTGTT	0.348													10	113	---	---	---	---	PASS
MOCOS	55034	broad.mit.edu	37	18	33836994	33836994	+	Missense_Mutation	SNP	A	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr18:33836994A>T	uc002kzq.3	+	12	2251	c.2228A>T	c.(2227-2229)AAC>ATC	p.N743I		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	743	MOSC.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	CTGCTGATCAACACATCCAGT	0.453													57	179	---	---	---	---	PASS
CCDC105	126402	broad.mit.edu	37	19	15132676	15132676	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr19:15132676G>A	uc002nae.2	+	6	1295	c.1196G>A	c.(1195-1197)CGC>CAC	p.R399H		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	399					microtubule cytoskeleton organization	microtubule				ovary(1)	1						CCCCTGGTTCGCATGTACCAG	0.642													35	88	---	---	---	---	PASS
SPTBN4	57731	broad.mit.edu	37	19	41062020	41062020	+	Silent	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr19:41062020G>A	uc002ony.2	+	25	5201	c.5115G>A	c.(5113-5115)GTG>GTA	p.V1705V	SPTBN4_uc002onx.2_Silent_p.V1705V|SPTBN4_uc002onz.2_Silent_p.V1705V|SPTBN4_uc010egx.2_Silent_p.V448V|SPTBN4_uc002ooa.2_Silent_p.V381V	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1705	Spectrin 14.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGTCTCAGGTGGACCGCCTGT	0.662													6	53	---	---	---	---	PASS
LRRC4B	94030	broad.mit.edu	37	19	51022639	51022639	+	Missense_Mutation	SNP	G	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr19:51022639G>T	uc002pss.2	-	3	468	c.331C>A	c.(331-333)CAC>AAC	p.H111N		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	111	Extracellular (Potential).|LRR 2.					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		ATCTCCAGGTGCCGCAGGTGC	0.607													8	37	---	---	---	---	PASS
DOPEY2	9980	broad.mit.edu	37	21	37586800	37586800	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr21:37586800G>A	uc002yvg.2	+	9	1154	c.1075G>A	c.(1075-1077)GCA>ACA	p.A359T	DOPEY2_uc011aeb.1_Missense_Mutation_p.A359T	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	359					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						ACGCCATCATGCATACCTGAA	0.393													9	70	---	---	---	---	PASS
COL6A1	1291	broad.mit.edu	37	21	47421898	47421898	+	Silent	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr21:47421898G>A	uc002zhu.1	+	31	2082	c.1980G>A	c.(1978-1980)GCG>GCA	p.A660A	COL6A1_uc010gqd.1_5'UTR|COL6A1_uc002zhv.1_5'UTR|COL6A1_uc002zhw.1_5'Flank	NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	660	VWFA 2.|C-terminal globular domain.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	AGTCGTACGCGGGTGTGGTGC	0.652													5	19	---	---	---	---	PASS
WNK3	65267	broad.mit.edu	37	X	54359994	54359994	+	Missense_Mutation	SNP	C	T	T			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chrX:54359994C>T	uc004dtd.1	-	2	552	c.113G>A	c.(112-114)AGA>AAA	p.R38K	WNK3_uc004dtc.1_Missense_Mutation_p.R38K	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	38					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						CTCCTTTAGTCTAGCTTCTAC	0.428													8	125	---	---	---	---	PASS
CENPI	2491	broad.mit.edu	37	X	100364926	100364926	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chrX:100364926G>A	uc004egx.2	+	5	800	c.530G>A	c.(529-531)CGT>CAT	p.R177H	CENPI_uc011mrg.1_Missense_Mutation_p.R177H|CENPI_uc004egy.2_Missense_Mutation_p.R177H	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	177					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TTCATTGATCGTAAGGAGCAA	0.338													33	26	---	---	---	---	PASS
FRMD7	90167	broad.mit.edu	37	X	131219961	131219961	+	Missense_Mutation	SNP	G	A	A			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chrX:131219961G>A	uc004ewn.2	-	6	662	c.484C>T	c.(484-486)CAT>TAT	p.H162Y	FRMD7_uc011muy.1_Missense_Mutation_p.H147Y	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	162	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TGCTTCTGATGAAAGTGCATG	0.443													73	88	---	---	---	---	PASS
HEXB	3074	broad.mit.edu	37	5	74016258	74016259	+	In_Frame_Ins	INS	-	AGA	AGA			TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr5:74016258_74016259insAGA	uc003kdf.3	+	12	1540_1541	c.1423_1424insAGA	c.(1423-1425)CAG>CAGAAG	p.476_477insK	HEXB_uc003kdd.2_In_Frame_Ins_p.251_252insK|HEXB_uc010izh.2_RNA|HEXB_uc010izi.1_RNA	NM_000521	NP_000512	P07686	HEXB_HUMAN	hexosaminidase B preproprotein	476_477					cell death	lysosome	cation binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Breast(144;0.231)		OV - Ovarian serous cystadenocarcinoma(47;1.72e-57)		TTTAGGTACTCAGAAACAGAAA	0.361													74	20	---	---	---	---	
HCG4	54435	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	-	-	rs146714150		TCGA-CH-5766-01A-11D-1576-08	TCGA-CH-5766-11A-01D-1576-08									Somatic	Phase_I	Capture				Illumina GAIIx	d4a89263-a535-44dc-b2d4-86405c5a3191	8190fde9-3acf-40d4-90c8-2344c571c55e	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	uc003nns.2	-	1		c.478_498delTGCTCCATCCACGGCGCCCGC			uc010jrm.1_In_Frame_Del_p.AGAVDGA111del|uc003nnt.2_In_Frame_Del_p.RAPWMEQ147del|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													6	3	---	---	---	---	
