GDAC_clinicalDataPickerPipeline Execution Log 3:05 PM Wed May 1, '13

Running as user: cgaadm_deadline

GDAC_clinicalDataPicker1 stage2File file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/UCEC/3025818/0.GDAC_clinicalDataMerger.Finished/UCEC.clin.merged.txt
GDAC_clinicalDataPicker1 selectFile file:/xchip/cga/reference/tcga/clinical/2013_04_21/stage3_params_clin_ucec.tsv
GDAC_clinicalDataPicker1 nodeColumn 1
GDAC_clinicalDataPicker1 outPrefix UCEC
Execution Times:
Submitted: 15:05:46 01-05-13
Completed:
Elapsed: 00 hrs 01 mins 45 secs

step 1. GDAC_clinicalDataPicker [id: 393906] Picks out the clinical paramters of interest

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
stage2File file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/UCEC/3025818/0.GDAC_clinicalDataMerger.Finished/UCEC.clin.merged.txt
selectFile file:/xchip/cga/reference/tcga/clinical/2013_04_21/stage3_params_clin_ucec.tsv
nodeColumn 1
outPrefix UCEC
Output Files:
 UCEC.clin.merged.picked.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 15:05:46 01-05-13
Completed: 15:06:52 01-05-13
Elapsed: 00 hrs 01 mins 06 secs

step 2. GDAC_clinicalDataPickerReport [id: 393907] Clinical data report

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
picked UCEC.clin.merged.picked.txt
Output Files:
 diagram_clinic.png
 paramStats.txt
 tier1_clinical_variables.txt
 nozzle.html
 tier1Data.txt
 report_tcga.html.RData
 report_private.html.RData
 report_private.html.html
 report_public.html.html
 report_tcga.html.html
 .lsf.out
 nozzle.RData
 report_public.html.RData
 stdout.txt
Execution Times:
Submitted: 15:05:46 01-05-13
Completed: 15:07:27 01-05-13
Elapsed: 00 hrs 01 mins 41 secs