Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RERE	473	genome.wustl.edu	37	1	8526011	8526011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001042681.1	-1	reviewed	p.E393K	1.000	70	0%	116	20.7%	-	-	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
GALNT2	2590	genome.wustl.edu	37	1	230381875	230381875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_004481.3	+1	reviewed	p.A266P	1.000	81	0%	170	15.3%	-	-	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
KIF26B	55083	genome.wustl.edu	37	1	245530524	245530524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_018012.3	+1	provisional	p.T285I	0.253	17	0%	21	38.1%	-	-	benign(0.147)	deleterious(0.02)	neutral(0.396)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128370146	128370146	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001080527.1	+1	provisional	p.I1096	0.426	14	0%	20	30%	-	-	-	-	-	HMMPfam_MyTH4,HMMSmart_SM00139
SH3BP4	23677	genome.wustl.edu	37	2	235951433	235951433	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_014521.2	+1	reviewed	p.L674V	1.000	71	0%	76	26.3%	-	-	possibly_damaging(0.556)	deleterious(0.03)	deleterious(0.554)	HMMPfam_SH3_2
ATP2B2	491	genome.wustl.edu	37	3	10417232	10417232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001001331.2	-1	reviewed	p.T433M	0.998	38	0%	55	23.6%	-	-	possibly_damaging(0.861)	deleterious(0.01)	deleterious(0.739)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
HTR3E	285242	genome.wustl.edu	37	3	183818358	183818358	+	Silent	SNP	A	A	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_182589.2	+1	reviewed	p.R66	0.521	250	0%	330	23%	-	-	-	-	-	superfamily_Neur_chan_LBD
TMEM207	131920	genome.wustl.edu	37	3	190167526	190167526	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_207316.1	-1	provisional	p.Q25*	1.000	134	0%	197	22.8%	-	-	-	-	-	NULL
UGT2B17	7367	genome.wustl.edu	37	4	69433715	69433715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001077.3	-1	reviewed	p.E163V	0.938	607	0%	480	22.9%	-	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMPfam_UDPGT,superfamily_SSF53756
FBXW7	55294	genome.wustl.edu	37	4	153247366	153247366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_033632.2	-1	reviewed	p.R479Q	1.000	158	0%	158	10.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
HCN1	348980	genome.wustl.edu	37	5	45262335	45262335	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_021072.2	-1	validated	p.S787	0.205	59	0%	42	23.8%	-	-	-	-	-	NULL
PCDHA9	9752	genome.wustl.edu	37	5	140229751	140229751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_031857.1	+1	reviewed	p.D557	0.993	58	0%	59	15.3%	-	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB6	56130	genome.wustl.edu	37	5	140531729	140531729	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_018939.2	+1	reviewed	p.R631*	0.983	76	0%	71	26.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
GRM6	2916	genome.wustl.edu	37	5	178416069	178416069	+	Silent	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_000843.3	-1	reviewed	p.A407	0.331	15	0%	14	50%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GLP1R	2740	genome.wustl.edu	37	6	39053712	39053712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_002062.3	+1	validated	p.R419C	1.000	151	0%	212	20.8%	-	-	benign(0.035)	deleterious(0.02)	neutral(0.385)	superfamily_Family A G protein-coupled receptor-like
TCTE1	202500	genome.wustl.edu	37	6	44253896	44253896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_182539.3	-1	validated	p.E217D	0.751	28	0%	32	18.8%	-	-	benign(0.005)	tolerated(0.31)	neutral(0.027)	superfamily_SSF52047
MICAL1	64780	genome.wustl.edu	37	6	109771579	109771580	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_022765.3	-1	validated	p.A372fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_FAD/NAD(P)-binding domain
TIAM2	26230	genome.wustl.edu	37	6	155500212	155500212	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_012454.3	+1	reviewed	p.R855*	0.993	145	0%	199	26.1%	-	-	-	-	-	HMMSmart_SM00455
LOC340268	340268	genome.wustl.edu	37	7	9767546	9767546	+	RNA	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	XR_041608.1	+1	model	NULL	0.996	60	0%	41	24.4%	-	-	-	-	-	-
SOX17	64321	genome.wustl.edu	37	8	55372518	55372518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_022454.3	+1	reviewed	p.S403I	1.000	29	0%	30	30%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110984939	110984939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_014379.2	-1	reviewed	p.S180N	1.000	139	0%	121	21.5%	-	-	possibly_damaging(0.553)	tolerated(0.49)	neutral(0.199)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46419022	46419022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_017749.2	-1	validated	p.R1202K	0.927	52	0%	60	26.7%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70172754	70172754	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_003626.2	+1	reviewed	p.E254*	0.998	281	0%	556	23.4%	-	-	-	-	-	NULL
TMPRSS5	80975	genome.wustl.edu	37	11	113560542	113560542	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_030770.2	-1	reviewed	p.P435fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_033360.2	-1	reviewed	p.G12V	1.000	74	0%	76	31.6%	-	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
BTBD11	121551	genome.wustl.edu	37	12	108010914	108010914	+	Missense_Mutation	SNP	G	G	A	rs147351765		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001018072.1	+1	validated	p.E684K	0.993	83	0%	72	40.3%	-	-	possibly_damaging(0.616)	tolerated(0.06)	deleterious(0.537)	superfamily_Ankyrin repeat
TNFRSF19	55504	genome.wustl.edu	37	13	24167530	24167530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_018647.2	+1	reviewed	p.F39C	1.000	190	0%	226	23%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
SNORA31	677814	genome.wustl.edu	37	13	45911657	45911657	+	RNA	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NR_002967.1	-1	provisional	NULL	1.000	98	0%	76	10.5%	-	-	unknown(0)	-	-	-
RB1	5925	genome.wustl.edu	37	13	48937085	48937085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_000321.2	+1	reviewed	p.I285V	1.000	195	0%	227	25.1%	-	-	benign(0)	tolerated(1)	-	NULL
TFDP1	7027	genome.wustl.edu	37	13	114287475	114287475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_007111.4	+1	reviewed	p.R117W	0.943	38	0%	50	12%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
KIF23	9493	genome.wustl.edu	37	15	69729046	69729046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_138555.1	+1	reviewed	p.E514K	0.958	70	0%	106	10.4%	-	-	benign(0.056)	tolerated(0.22)	neutral(0.046)	NULL
CYP11A1	1583	genome.wustl.edu	37	15	74635353	74635353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_000781.2	-1	reviewed	p.N319H	1.000	140	0%	156	22.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_p450,superfamily_Cytochrome P450
UNC45B	146862	genome.wustl.edu	37	17	33504530	33504530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_173167.2	+1	validated	p.R721Q	0.996	3	0.000	15	0.667	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_ARM repeat
THRA	7067	genome.wustl.edu	37	17	38245662	38245662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_199334.2	+1	reviewed	p.L396F	1.000	57	0%	87	25.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
EPX	8288	genome.wustl.edu	37	17	56277670	56277670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_000502.4	+1	reviewed	p.R541Q	1.000	56	0%	72	31.9%	-	-	possibly_damaging(0.502)	deleterious(0.01)	deleterious(0.573)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
NLRP4	147945	genome.wustl.edu	37	19	56370052	56370052	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_134444.4	+1	validated	p.A431	0.000	161	0%	147	23.8%	-	-	-	-	-	NULL
USP16	10600	genome.wustl.edu	37	21	30419561	30419561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001032410.1	+1	reviewed	p.E644K	1.000	240	0%	325	22.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
DIP2A	23181	genome.wustl.edu	37	21	47987375	47987375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_015151.3	+1	reviewed	p.N1519S	0.995	60	0%	75	20%	-	-	possibly_damaging(0.894)	tolerated(0.28)	neutral(0.383)	superfamily_Acetyl-CoA synthetase-like
TRO	7216	genome.wustl.edu	37	X	54950962	54950962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_001039705.1	+1	reviewed	p.R439*	0.018	62	0%	87	11.5%	-	-	-	-	-	NULL
GJB1	2705	genome.wustl.edu	37	X	70444034	70444034	+	Silent	SNP	C	C	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_000166.5	+1	reviewed	p.G159	1.000	67	0%	57	15.8%	-	-	-	-	-	HMMPfam_Connexin_CCC
HCFC1	3054	genome.wustl.edu	37	X	153225792	153225792	+	Silent	SNP	G	G	A	novel		TCGA-AP-A05P-01A-11W-A062-09	TCGA-AP-A05P-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c7149eae-09da-4015-9654-8f17242514a4	74c91100-72fa-45fb-9b0a-02db6a18bc21	NM_005334.2	-1	reviewed	p.C326	0.999	4	0.000	9	0.444	-	-	-	-	-	superfamily_Galactose oxidase central domain
