Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBE2J2	118424	genome.wustl.edu	37	1	1190694	1190694	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_194315.1	-1	reviewed	p.N239	1.000	17	0%	24	41.7%	40	47.5%	-	-	-	NULL
PRKCZ	5590	genome.wustl.edu	37	1	2077531	2077531	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002744.4	+1	reviewed	p.S206	0.001	47	0%	66	13.6%	8	50%	-	-	-	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
CAMTA1	23261	genome.wustl.edu	37	1	7811356	7811356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015215.1	+1	validated	p.A1596V	1.000	371	0%	335	11.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXO6	26270	genome.wustl.edu	37	1	11733741	11733741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018438.5	+1	reviewed	p.T239A	1.000	21	0%	33	36.4%	15	13.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_FBA,superfamily_Galactose-binding domain-like
SPATA21	374955	genome.wustl.edu	37	1	16736199	16736199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198546.1	-1	provisional	p.M162V	0.004	54	0%	31	12.9%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
MST1P9	11223	genome.wustl.edu	37	1	17085446	17085446	+	RNA	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NR_002729.2	-1	validated	NULL	0.972	121	0%	118	16.1%	0	-	-	-	-	-
UBR4	23352	genome.wustl.edu	37	1	19478913	19478913	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020765.2	-1	validated	p.Q2297P	1.000	280	0%	302	41.4%	4	0%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19499757	19499757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020765.2	-1	validated	p.S1070L	0.985	325	0%	435	37.9%	0	-	benign(0.014)	deleterious(0.04)	neutral(0.349)	NULL
MUL1	79594	genome.wustl.edu	37	1	20827226	20827226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024544.2	-1	validated	p.C339Y	1.000	62	0%	67	10.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,superfamily_SSF57850
KIF17	57576	genome.wustl.edu	37	1	21030945	21030945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020816.2	-1	validated	p.L373P	0.993	28	0%	23	30.4%	0	-	probably_damaging(0.965)	tolerated(0.19)	neutral(0.456)	NULL
KIF17	57576	genome.wustl.edu	37	1	21040033	21040033	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020816.2	-1	validated	p.K132*	1.000	14	0%	24	20.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
LDLRAD2	401944	genome.wustl.edu	37	1	22141020	22141020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001013693.2	+1	validated	p.A72V	0.992	6	0.000	11	0.455	1	0%	possibly_damaging(0.677)	tolerated(0.08)	deleterious(0.541)	superfamily_CUB
ARID1A	8289	genome.wustl.edu	37	1	27100182	27100184	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006015.4	+1	reviewed	p.Q1330in_frame_del	0.986:0.981:0.931	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27100207	27100207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006015.4	+1	reviewed	p.R1335*	0.945	218	0%	202	40.6%	9	11.1%	-	-	-	NULL
YTHDF2	51441	genome.wustl.edu	37	1	29070217	29070217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016258.2	+1	reviewed	p.Y479H	1.000	84	0%	69	29%	21	28.5%	possibly_damaging(0.926)	deleterious(0.05)	deleterious(0.720)	HMMPfam_YTH
SPOCD1	90853	genome.wustl.edu	37	1	32280393	32280393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144569.4	-1	provisional	p.S181N	0.021	116	0%	89	12.4%	0	-	benign(0.202)	-	-	NULL
CLSPN	63967	genome.wustl.edu	37	1	36219380	36219380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022111.2	-1	reviewed	p.K580fs	0.964	-	-	-	-	-	-	-	-	-	NULL
STK40	83931	genome.wustl.edu	37	1	36809485	36809485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032017.1	-1	provisional	p.A327V	1.000	17	0%	22	22.7%	4	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZC3H12A	80149	genome.wustl.edu	37	1	37948808	37948808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025079.2	+1	validated	p.A466S	0.000	33	0%	17	23.5%	4	0%	benign(0)	tolerated(0.94)	-	NULL
GJA9	81025	genome.wustl.edu	37	1	39340418	39340419	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030772.3	-1	provisional	p.T451fs	0.000:0.002	-	-	-	-	-	-	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39776088	39776088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012090.3	+1	reviewed	p.S1035P	1.000	112	0%	139	36.7%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39927672	39927672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033044.2	+1	reviewed	p.Y5657C	1.000	252	0%	224	10.7%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFYC	4802	genome.wustl.edu	37	1	41236498	41236498	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000397229	+1	known	p.L378Q	1.000	66	0%	80	37.5%	29	20.6%	-	-	-	NULL
SCMH1	22955	genome.wustl.edu	37	1	41514553	41514553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031694.2	-1	validated	p.Y362C	1.000	182	0%	120	22.5%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SZT2	23334	genome.wustl.edu	37	1	43907481	43907481	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015284.2	+1	predicted	p.E1679	1.000	106	0%	79	45.6%	2	50%	-	-	-	NULL
PTCH2	8643	genome.wustl.edu	37	1	45292045	45292045	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003738.4	-1	reviewed	p.A997	0.457	24	0%	30	40%	1	0%	-	-	-	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
MMACHC	25974	genome.wustl.edu	37	1	45974628	45974628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015506.2	+1	reviewed	p.N197I	1.000	128	0%	149	33.6%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
POMGNT1	55624	genome.wustl.edu	37	1	46657982	46657982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017739.3	-1	reviewed	p.K471E	1.000	134	0.7%	103	16.5%	28	17.8%	possibly_damaging(0.611)	tolerated(0.14)	neutral(0.461)	HMMPfam_GNT-I,superfamily_Nucleotide-diphospho-sugar transferases
CYP4X1	260293	genome.wustl.edu	37	1	47505132	47505132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178033.1	+1	reviewed	p.L334P	0.206	107	0.9%	200	39.5%	4	100%	possibly_damaging(0.924)	tolerated(0.13)	deleterious(0.625)	HMMPfam_p450,superfamily_Cytochrome P450
RAB3B	5865	genome.wustl.edu	37	1	52442682	52442682	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002867.3	-1	validated	p.T36	0.987	146	0%	154	42.9%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
CPT2	1376	genome.wustl.edu	37	1	53676198	53676198	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000098.2	+1	reviewed	p.P284	0.053	178	0%	161	25.5%	9	22.2%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
MRPL37	51253	genome.wustl.edu	37	1	54683893	54683893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016491.3	+1	reviewed	p.L415I	1.000	208	0%	168	33.9%	42	45.2%	possibly_damaging(0.905)	tolerated(0.14)	deleterious(0.609)	NULL
PCSK9	255738	genome.wustl.edu	37	1	55512215	55512215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_174936.2	+1	reviewed	p.V140A	0.909	54	0%	55	27.3%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	superfamily_Subtilisin-like,superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9
USP24	23358	genome.wustl.edu	37	1	55545262	55545262	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015306.2	-1	validated	p.E2223	1.000	246	0%	387	25.6%	6	0%	-	-	-	NULL
WLS	79971	genome.wustl.edu	37	1	68611627	68611627	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001002292.2	-1	validated	p.F399L	0.827	154	0%	213	23.9%	35	22.8%	possibly_damaging(0.466)	tolerated(0.13)	neutral(0.405)	NULL
ZRANB2	9406	genome.wustl.edu	37	1	71535005	71535005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_203350.1	-1	validated	p.R242C	1.000	177	0%	278	34.9%	6	0%	unknown(0)	deleterious(0.05)	-	NULL
CLCA1	1179	genome.wustl.edu	37	1	86951119	86951119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001285.3	+1	reviewed	p.R277C	0.000	480	0%	559	36%	0	-	possibly_damaging(0.89)	deleterious(0.03)	deleterious(0.714)	NULL
GBP3	2635	genome.wustl.edu	37	1	89479900	89479900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018284.2	-1	reviewed	p.E164G	0.019	260	0%	214	11.7%	8	0%	possibly_damaging(0.789)	tolerated(0.13)	deleterious(0.548)	superfamily_SSF52540
S1PR1	1901	genome.wustl.edu	37	1	101704737	101704737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001400.4	+1	reviewed	p.V66A	1.000	208	1%	232	15.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
COL11A1	1301	genome.wustl.edu	37	1	103453237	103453237	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_080629.2	-1	reviewed	p.R830	0.997	87	1.1%	197	13.7%	0	-	unknown(0)	-	-	HMMPfam_Collagen
AKNAD1	254268	genome.wustl.edu	37	1	109377557	109377557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152763.3	-1	validated	p.P553L	0.000	39	0%	39	43.6%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
CLCC1	23155	genome.wustl.edu	37	1	109479939	109479939	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001048210.1	-1	validated	p.R381	0.000	329	0%	213	28.2%	11	63.6%	-	-	-	HMMPfam_MCLC
ATXN7L2	127002	genome.wustl.edu	37	1	110032747	110032747	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153340.4	+1	validated	p.Q411	1.000	58	0%	45	51.1%	4	25%	-	-	-	NULL
KCNA3	3738	genome.wustl.edu	37	1	111216092	111216092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002232.3	-1	reviewed	p.Y447C	0.996	52	0%	97	11.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
CHI3L2	1117	genome.wustl.edu	37	1	111784948	111784948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004000.2	+1	validated	p.L379I	0.989	397	0%	437	38.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Glyco_hydro_cat
AP4B1	10717	genome.wustl.edu	37	1	114438451	114438451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006594.2	-1	validated	p.T574A	0.458	111	0%	111	46.8%	11	63.6%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
HIPK1	204851	genome.wustl.edu	37	1	114514596	114514596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152696.3	+1	reviewed	p.C1055Y	1.000	111	0%	102	23.5%	0	-	possibly_damaging(0.838)	-	-	NULL
SYCP1	6847	genome.wustl.edu	37	1	115527450	115527450	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003176.2	+1	validated	p.F888	0.992	363	0.3%	611	14.6%	0	-	-	-	-	NULL
ATP1A1	476	genome.wustl.edu	37	1	116929941	116929941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000701.7	+1	reviewed	p.L72P	1.000	138	0%	125	32%	23	30.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
TRIM45	80263	genome.wustl.edu	37	1	117658309	117658309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025188.3	-1	reviewed	p.P452R	0.436	128	0%	196	30.1%	11	36.3%	benign(0.02)	tolerated(0.67)	neutral(0.004)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TBX15	6913	genome.wustl.edu	37	1	119427641	119427641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152380.2	-1	reviewed	p.A402V	1.000	60	0%	59	15.3%	0	-	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
CA14	23632	genome.wustl.edu	37	1	150236067	150236067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012113.1	+1	reviewed	p.S284L	0.001	374	0%	316	30.1%	5	20%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
HRNR	388697	genome.wustl.edu	37	1	152193365	152193365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001009931.1	-1	validated	p.H247R	0.000	122	0%	194	25.8%	0	-	unknown(0)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152276603	152276603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002016.1	-1	reviewed	p.G3587C	0.000	398	0%	620	15%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FLG	2312	genome.wustl.edu	37	1	152277559	152277559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002016.1	-1	reviewed	p.A3268V	0.022	320	0%	567	28.6%	0	-	unknown(0)	tolerated(0.17)	-	NULL
IL6R	3570	genome.wustl.edu	37	1	154437786	154437786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000565.2	+1	reviewed	p.N446S	0.013	105	0%	91	26.4%	0	-	benign(0)	tolerated(1)	-	NULL
FLAD1	80308	genome.wustl.edu	37	1	154965051	154965051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000405236	+1	known	p.I310M	0.000	99	0%	69	14.5%	1	0%	unknown(0)	-	-	NULL
ADAM15	8751	genome.wustl.edu	37	1	155028279	155028279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207197.1	+1	reviewed	p.V209A	0.903	76	0%	145	29.7%	55	32.7%	benign(0.042)	tolerated(0.09)	neutral(0.299)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
THBS3	7059	genome.wustl.edu	37	1	155168318	155168318	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007112.3	-1	reviewed	p.N652	0.890	90	0%	101	31.7%	2	50%	-	-	-	HMMPfam_TSP_3,superfamily_TSP type-3 repeat
FAM189B	10712	genome.wustl.edu	37	1	155221366	155221366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006589.2	-1	validated	p.S274N	1.000	68	0%	80	22.5%	2	50%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
CLK2	1196	genome.wustl.edu	37	1	155233799	155233799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003993.2	-1	reviewed	p.D419G	1.000	124	0%	131	34.4%	32	21.8%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ASH1L	55870	genome.wustl.edu	37	1	155327393	155327393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018489.2	-1	reviewed	p.H2315Y	1.000	277	0%	318	29.6%	4	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SYT11	23208	genome.wustl.edu	37	1	155838146	155838146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152280.4	+1	reviewed	p.G142V	0.998	482	0%	484	17.4%	1	0%	benign(0.167)	tolerated(0.09)	neutral(0.311)	NULL
SSR2	6746	genome.wustl.edu	37	1	155988153	155988153	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003145.3	-1	reviewed	p.A54	0.777	134	0%	122	31.1%	222	31.9%	-	-	-	HMMPfam_TRAP_beta
SEMA4A	64218	genome.wustl.edu	37	1	156146519	156146519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022367.2	+1	provisional	p.A673T	0.022	214	0%	177	23.7%	19	21%	benign(0.043)	tolerated(0.34)	neutral(0.025)	NULL
PRCC	5546	genome.wustl.edu	37	1	156756456	156756456	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005973.4	+1	reviewed	p.T191	0.999	260	0%	288	29.5%	29	17.2%	-	-	-	NULL
INSRR	3645	genome.wustl.edu	37	1	156821913	156821913	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014215.1	-1	validated	p.G236	1.000	24	0%	24	25%	0	-	-	-	-	HMMPfam_Furin-like,HMMSmart_FU,superfamily_Grow_fac_recept
ARHGEF11	9826	genome.wustl.edu	37	1	156946813	156946813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198236.1	-1	reviewed	p.L182I	1.000	291	0%	344	30.2%	5	0%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
FCRL1	115350	genome.wustl.edu	37	1	157771788	157771788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_052938.4	-1	reviewed	p.E268G	0.351	169	0%	327	29.7%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DARC	2532	genome.wustl.edu	37	1	159175620	159175620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001122951.1	+1	reviewed	p.L133M	0.007	100	0%	68	23.5%	13	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
SLAMF8	56833	genome.wustl.edu	37	1	159803056	159803056	+	Silent	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020125.2	+1	reviewed	p.P226	0.944	455	0%	385	22.9%	3	0%	-	-	-	NULL
VANGL2	57216	genome.wustl.edu	37	1	160390292	160390292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020335.1	+1	validated	p.L298M	1.000	341	0.3%	356	19.4%	3	0%	possibly_damaging(0.637)	tolerated(0.06)	deleterious(0.545)	HMMPfam_Strabismus
USP21	27005	genome.wustl.edu	37	1	161133751	161133751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001014443.2	+1	reviewed	p.L400M	1.000	154	0%	209	30.1%	10	20%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_UCH,superfamily_Cysteine proteinases
UAP1	6675	genome.wustl.edu	37	1	162546566	162546566	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003115.4	+1	validated	e2-1	1.000	184	0%	302	27.8%	0	-	-	-	-	-
DDR2	4921	genome.wustl.edu	37	1	162725488	162725488	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001014796.1	+1	reviewed	p.Q200	1.000	174	0%	348	14.4%	0	-	-	-	-	NULL
LRRC52	440699	genome.wustl.edu	37	1	165532976	165532976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001005214.3	+1	validated	p.D286G	0.958	130	0%	224	31.7%	0	-	benign(0.418)	deleterious(0.01)	deleterious(0.541)	NULL
MAEL	84944	genome.wustl.edu	37	1	166990952	166990952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032858.1	+1	validated	p.R389W	1.000	155	0%	256	18.4%	2	0%	possibly_damaging(0.491)	deleterious(0)	deleterious(0.608)	NULL
DPT	1805	genome.wustl.edu	37	1	168698377	168698377	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001937.3	-1	reviewed	p.L12	0.788	47	0%	80	31.2%	5	0%	-	-	-	NULL
FMO1	2326	genome.wustl.edu	37	1	171251441	171251441	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002021.1	+1	reviewed	p.T384	0.028	124	0%	225	15.1%	0	-	-	-	-	HMMPfam_FMO-like
CENPL	91687	genome.wustl.edu	37	1	173776484	173776484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001127181.2	-1	validated	p.D114G	1.000	197	0%	310	17.4%	3	33.3%	possibly_damaging(0.951)	deleterious(0.03)	deleterious(0.758)	NULL
DARS2	55157	genome.wustl.edu	37	1	173819555	173819555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018122.4	+1	reviewed	p.R428G	0.002	60	0%	122	21.3%	5	40%	benign(0.205)	deleterious(0.04)	neutral(0.369)	HMMPfam_GAD,HMMPfam_tRNA-synt_2,superfamily_SSF55261,superfamily_SSF55681
RC3H1	149041	genome.wustl.edu	37	1	173930222	173930222	+	Missense_Mutation	SNP	G	G	A	rs140858270	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172071.2	-1	validated	p.P788L	0.999	159	0%	251	29.1%	0	-	benign(0.014)	tolerated(0.65)	neutral(0.004)	NULL
TNN	63923	genome.wustl.edu	37	1	175066638	175066638	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022093.1	+1	validated	p.I558	0.591	99	0%	133	21.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175086172	175086172	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022093.1	+1	validated	p.V739	1.000	150	0%	245	13.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
AXDND1	126859	genome.wustl.edu	37	1	179347879	179347879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144696.4	+1	validated	p.I161T	0.816	212	0%	370	25.9%	0	-	unknown(0)	tolerated(0.47)	-	NULL
GLUL	2752	genome.wustl.edu	37	1	182354903	182354903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001033044.2	-1	reviewed	p.P199S	1.000	401	0%	695	26.8%	63	12.6%	possibly_damaging(0.439)	deleterious(0)	deleterious(0.588)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
TEDDM1	127670	genome.wustl.edu	37	1	182369465	182369465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172000.3	-1	validated	p.M52I	0.177	169	0%	288	29.9%	0	-	benign(0.009)	tolerated(0.2)	neutral(0.050)	NULL
RNASEL	6041	genome.wustl.edu	37	1	182555290	182555290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021133.2	-1	reviewed	p.V218M	0.012	166	0%	305	26.9%	0	-	benign(0.13)	tolerated(0.05)	neutral(0.356)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LAMC1	3915	genome.wustl.edu	37	1	183106840	183106840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002293.3	+1	reviewed	p.F1451L	1.000	188	0%	229	11.8%	19	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
SMG7	9887	genome.wustl.edu	37	1	183515404	183515404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173156.2	+1	validated	p.R892C	1.000	168	0%	297	23.2%	9	11.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186057776	186057776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031935.2	+1	reviewed	p.G3206C	1.000	67	0%	183	30.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186081999	186081999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031935.2	+1	reviewed	p.A3682V	1.000	167	0%	284	14.8%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186097264	186097265	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031935.2	+1	reviewed	p.T4251fs	1.000:0.995	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
B3GALT2	8707	genome.wustl.edu	37	1	193149573	193149573	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003783.3	-1	reviewed	p.C374S	1.000	112	0%	173	31.2%	2	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
B3GALT2	8707	genome.wustl.edu	37	1	193149687	193149687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003783.3	-1	reviewed	p.R336G	1.000	87	0%	133	26.3%	1	100%	probably_damaging(0.995)	tolerated(0.32)	deleterious(0.482)	HMMPfam_Galactosyl_T
CFHR2	3080	genome.wustl.edu	37	1	196918742	196918742	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005666.2	+1	validated	p.C72	0.000	169	0%	343	16.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CRB1	23418	genome.wustl.edu	37	1	197446879	197446879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_201253.1	+1	reviewed	p.V1364A	0.000	107	0%	203	34.5%	0	-	unknown(0)	-	-	NULL
CACNA1S	779	genome.wustl.edu	37	1	201079342	201079342	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000069.2	-1	reviewed	p.V70L	0.940	59	0%	112	26.8%	0	-	benign(0.005)	tolerated(0.76)	neutral(0.001)	superfamily_SSF81324
KDM5B	10765	genome.wustl.edu	37	1	202704619	202704619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006618.3	-1	validated	p.K1121E	0.001	174	0%	252	25%	5	20%	benign(0.036)	tolerated(1)	neutral(0.002)	NULL
CHIT1	1118	genome.wustl.edu	37	1	203192276	203192276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003465.2	-1	reviewed	p.D198N	1.000	89	0%	156	17.9%	2	0%	benign(0.002)	tolerated(0.44)	neutral(0.013)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
LAX1	54900	genome.wustl.edu	37	1	203740523	203740523	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017773.3	+1	validated	p.V76	0.000	732	0%	784	12.1%	1	0%	-	-	-	NULL
LRRN2	10446	genome.wustl.edu	37	1	204588213	204588213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006338.2	-1	reviewed	p.K303R	1.000	83	0%	79	11.4%	0	-	benign(0.004)	tolerated(1)	-	superfamily_L domain-like
SLC45A3	85414	genome.wustl.edu	37	1	205632052	205632052	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033102.2	-1	validated	p.T289	0.796	31	0%	46	21.7%	1	100%	-	-	-	superfamily_MFS general substrate transporter
PM20D1	148811	genome.wustl.edu	37	1	205814641	205814641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152491.4	-1	validated	p.V101M	0.745	106	0%	109	22.9%	1	0%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_Zn-dependent exopeptidases
YOD1	55432	genome.wustl.edu	37	1	207222393	207222393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018566.3	-1	validated	p.T340I	1.000	172	0%	167	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1
CR1L	1379	genome.wustl.edu	37	1	207874962	207874962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_175710.1	+1	validated	p.G443W	0.579	122	0%	190	33.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PLXNA2	5362	genome.wustl.edu	37	1	208204984	208204984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025179.3	-1	reviewed	p.R1726G	1.000	44	0%	47	36.2%	4	25%	possibly_damaging(0.586)	tolerated(0.07)	deleterious(0.521)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
KCNH1	3756	genome.wustl.edu	37	1	210856627	210856627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172362.2	-1	reviewed	p.S989N	1.000	497	0%	383	19.1%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
LPGAT1	9926	genome.wustl.edu	37	1	211961026	211961026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014873.2	-1	validated	p.Y134C	1.000	90	0%	134	17.2%	2	50%	possibly_damaging(0.733)	tolerated(0.14)	deleterious(0.518)	HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
VASH2	79805	genome.wustl.edu	37	1	213145937	213145937	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024749.3	+1	validated	p.G127	0.987	193	0%	224	26.8%	0	-	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	215848417	215848417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_206933.2	-1	reviewed	p.Q4279P	0.006	295	0.3%	439	30.8%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MARK1	4139	genome.wustl.edu	37	1	220826574	220826574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018650.3	+1	validated	p.R623H	0.999	82	0%	172	10.5%	7	0%	possibly_damaging(0.511)	deleterious(0.01)	deleterious(0.577)	NULL
WDR26	80232	genome.wustl.edu	37	1	224612238	224612238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025160.6	-1	reviewed	p.R102H	1.000	192	0%	278	23.4%	10	10%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
PARP1	142	genome.wustl.edu	37	1	226589965	226589965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001618.3	-1	reviewed	p.W79L	1.000	86	0%	138	23.9%	3	33.3%	possibly_damaging(0.493)	tolerated(0.1)	neutral(0.451)	HMMPfam_zf-PARP,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
OBSCN	84033	genome.wustl.edu	37	1	228412337	228412337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098623.1	+1	reviewed	p.T944M	0.000	47	0%	68	20.6%	0	-	possibly_damaging(0.909)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RHOU	58480	genome.wustl.edu	37	1	228879327	228879327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021205.4	+1	reviewed	p.L206S	1.000	171	0%	252	15.1%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
EGLN1	54583	genome.wustl.edu	37	1	231502203	231502203	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022051.2	-1	reviewed	p.V412G	1.000	81	0%	183	17.5%	11	45.4%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
KIAA1804	84451	genome.wustl.edu	37	1	233482228	233482228	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032435.2	+1	validated	p.N282	0.960	230	0%	406	24.9%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC35F3	148641	genome.wustl.edu	37	1	234444919	234444919	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173508.2	+1	provisional	p.G227	1.000	75	0%	133	27.1%	0	-	-	-	-	superfamily_SSF103481
TARBP1	6894	genome.wustl.edu	37	1	234582722	234582722	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005646.3	-1	reviewed	e12-1	1.000	188	0%	346	25.4%	1	0%	-	-	-	-
NID1	4811	genome.wustl.edu	37	1	236145057	236145057	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002508.2	-1	reviewed	p.A1027	0.001	210	0%	227	12.3%	3	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NID1	4811	genome.wustl.edu	37	1	236175219	236175219	+	Splice_Site	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002508.2	-1	reviewed	e12+2	1.000	87	0%	131	14.5%	0	-	-	-	-	-
AHCTF1	25909	genome.wustl.edu	37	1	247013095	247013095	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015446.4	-1	validated	p.E2071	0.001	203	0%	315	15.6%	14	14.2%	-	-	-	NULL
ZNF672	79894	genome.wustl.edu	37	1	249142680	249142680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024836.1	+1	provisional	p.C403R	0.979	11	0%	21	28.6%	11	36.3%	possibly_damaging(0.805)	deleterious(0.03)	deleterious(0.667)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYT1L	23040	genome.wustl.edu	37	2	1983540	1983540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015025.2	-1	validated	p.D4N	1.000	34	0%	28	21.4%	0	-	unknown(0)	tolerated(0.21)	-	NULL
ASAP2	8853	genome.wustl.edu	37	2	9496329	9496329	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003887.2	+1	reviewed	p.N394	1.000	152	0%	141	23.4%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SMC6	79677	genome.wustl.edu	37	2	17889964	17889964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001142286.1	-1	validated	p.A596V	1.000	104	0%	210	10%	1	0%	benign(0.221)	deleterious(0.03)	neutral(0.387)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
DTNB	1838	genome.wustl.edu	37	2	25611226	25611226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021907.3	-1	reviewed	p.Q527R	1.000	35	0%	24	41.7%	34	20.5%	benign(0.011)	tolerated(0.09)	neutral(0.297)	NULL
CAD	790	genome.wustl.edu	37	2	27447737	27447737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004341.3	+1	reviewed	p.V460A	1.000	144	0%	171	26.9%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
C2orf16	84226	genome.wustl.edu	37	2	27804091	27804091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032266.3	+1	validated	p.R1551H	0.000	329	0%	243	41.2%	0	-	unknown(0)	deleterious(0.02)	-	NULL
MEMO1	51072	genome.wustl.edu	37	2	32117149	32117149	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000422936	-1	known	p.Q46R	1.000	385	0%	463	36.7%	11	27.2%	-	-	-	HMMPfam_Memo
EIF2AK2	5610	genome.wustl.edu	37	2	37365692	37365692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001135651.1	-1	validated	p.T185A	0.000	170	0%	148	25.7%	4	50%	benign(0.007)	tolerated(0.26)	neutral(0.034)	NULL
EPCAM	4072	genome.wustl.edu	37	2	47604213	47604213	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002354.2	+1	reviewed	p.I184	0.889	90	0%	104	30.8%	238	44.1%	-	-	-	NULL
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48808552	48808552	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172311.1	+1	reviewed	p.S260	0.532	126	0%	115	25.2%	2	0%	-	-	-	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54849514	54849514	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003128.2	+1	reviewed	p.I318	1.000	220	0%	201	34.8%	1	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
C2orf63	130162	genome.wustl.edu	37	2	55439868	55439868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152385.2	-1	validated	p.Y147C	0.107	55	0%	66	43.9%	5	0%	benign(0.013)	deleterious(0.02)	neutral(0.384)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55549775	55549775	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001135597.1	-1	validated	p.V1016	0.487	131	0%	221	39.8%	0	-	-	-	-	NULL
BCL11A	53335	genome.wustl.edu	37	2	60689531	60689531	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022893.3	-1	reviewed	p.C172	1.000	77	0%	69	36.2%	1	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PAPOLG	64895	genome.wustl.edu	37	2	61006790	61006790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022894.2	+1	reviewed	p.N238S	1.000	257	0%	200	26%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PAP_central,superfamily_PAP/OAS1 substrate-binding domain
XPO1	7514	genome.wustl.edu	37	2	61760991	61760991	+	Silent	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003400.3	-1	reviewed	p.R14	0.858	59	0%	82	24.4%	2	0%	-	-	-	NULL
CCT4	10575	genome.wustl.edu	37	2	62099259	62099259	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006430.2	-1	validated	p.R483	0.975	119	0%	142	12%	130	6.9%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
VPS54	51542	genome.wustl.edu	37	2	64141314	64141314	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016516.2	-1	reviewed	e16+2	1.000	87	0%	167	16.2%	0	-	-	-	-	-
DYSF	8291	genome.wustl.edu	37	2	71887769	71887769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001130987.1	+1	reviewed	p.P1664H	1.000	188	0%	129	28.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
LOXL3	84695	genome.wustl.edu	37	2	74761527	74761530	+	Frame_Shift_Del	DEL	AGTG	AGTG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AGTG	AGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032603.2	-1	reviewed	p.H618fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Lysyl_oxidase
HK2	3099	genome.wustl.edu	37	2	75116438	75116438	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000189.4	+1	reviewed	p.D814	0.915	66	0%	58	13.8%	2	0%	-	-	-	HMMPfam_Hexokinase_2,superfamily_SSF53067
SFTPB	6439	genome.wustl.edu	37	2	85890934	85890934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000542.3	-1	reviewed	p.V237M	0.996	9	0.000	6	0.667	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SapB,superfamily_Saposin_like
TMEM131	23505	genome.wustl.edu	37	2	98429102	98429102	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015348.1	-1	validated	p.E576	1.000	129	0%	124	23.4%	1	0%	-	-	-	NULL
TMEM131	23505	genome.wustl.edu	37	2	98504584	98504584	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015348.1	-1	validated	e4-1	1.000	125	0%	113	30.1%	0	-	-	-	-	-
VWA3B	200403	genome.wustl.edu	37	2	98907090	98907092	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000422503	+1	known	p.F1058in_frame_del	0.009:0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
REV1	51455	genome.wustl.edu	37	2	100027276	100027278	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016316.2	-1	reviewed	p.R742in_frame_del	0.997:1.000:0.994	-	-	-	-	-	-	-	-	-	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases
NPAS2	4862	genome.wustl.edu	37	2	101587484	101587484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002518.3	+1	reviewed	p.E363A	1.000	56	0%	34	23.5%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LIMS1	3987	genome.wustl.edu	37	2	109271583	109271585	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000393314	+1	known	p.IP18in_frame_delT	0.672:0.689:0.743	-	-	-	-	-	-	-	-	-	NULL
SEPT10	151011	genome.wustl.edu	37	2	110332246	110332246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144710.2	-1	reviewed	p.R171H	1.000	94	0%	113	10.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLASP1	23332	genome.wustl.edu	37	2	122165272	122165274	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015282.2	-1	validated	p.R815in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136581551	136581551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002299.2	-1	reviewed	p.V276A	0.965	54	0%	39	17.9%	0	-	possibly_damaging(0.434)	deleterious(0)	deleterious(0.586)	superfamily_Glyco_hydro_cat
HNMT	3176	genome.wustl.edu	37	2	138738920	138738920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001024075.1	+1	reviewed	p.R109C	0.000	204	0%	242	26.9%	0	-	unknown(0)	-	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149220195	149220195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018328.4	+1	reviewed	p.Y53C	1.000	174	0%	303	23.4%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_MBD,HMMSmart_SM00391
LYPD6B	130576	genome.wustl.edu	37	2	150071219	150071219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_177964.3	+1	provisional	p.L207M	0.001	266	0%	316	21.5%	0	-	possibly_damaging(0.765)	deleterious(0.02)	deleterious(0.667)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160205637	160205637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013450.2	-1	validated	p.V1673A	0.507	208	0%	377	22.3%	0	-	benign(0.132)	tolerated(0.2)	neutral(0.060)	NULL
PSMD14	10213	genome.wustl.edu	37	2	162224372	162224372	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005805.4	+1	validated	p.T66	0.904	37	0%	79	10.1%	17	0%	-	-	-	HMMPfam_Mov34,HMMSmart_SM00232,superfamily_JAB1/MPN domain
SCN1A	6323	genome.wustl.edu	37	2	166897777	166897777	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006920.4	-1	reviewed	p.T782	0.000	93	0%	112	32.1%	0	-	-	-	-	superfamily_SSF81324
ATF2	1386	genome.wustl.edu	37	2	175979427	175979427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001880.2	-1	reviewed	p.R206M	1.000	185	0%	255	36.1%	4	50%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
HOXD10	3236	genome.wustl.edu	37	2	176982075	176982075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002148.3	+1	reviewed	p.G172C	1.000	48	0%	66	16.7%	5	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
HOXD4	3233	genome.wustl.edu	37	2	177017340	177017340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014621.2	+1	reviewed	p.N146K	1.000	42	0%	38	39.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Homeodomain_like
TTN	7273	genome.wustl.edu	37	2	179422468	179422468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000356127	-1	known	p.G26635*	1.000	372	0%	648	39.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179425592	179425592	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000356127	-1	known	p.R25853*	0.999	82	0%	117	39.3%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179443654	179443654	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133378.4	-1	reviewed	p.P20133Q	0.994	96	0%	155	22.6%	1	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179444448	179444448	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133378.4	-1	reviewed	p.L19924P	0.870	151	0%	226	22.1%	2	50%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179472162	179472162	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000356127	-1	known	p.G15183	0.991	450	0%	768	24.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179486673	179486673	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000356127	-1	known	p.K12424	1.000	71	0%	84	15.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179534401	179534401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000448510	-1	known	p.T154A	0.973	443	0.2%	676	37.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179553411	179553411	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000356127	-1	known	p.R9486	0.000	117	0%	106	31.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179612202	179612202	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133379.3	-1	reviewed	p.S4975	0.919	234	0%	356	24.4%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179640246	179640246	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133379.3	-1	reviewed	p.G2115	1.000	118	0%	170	39.4%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179666867	179666867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133379.3	-1	reviewed	p.K98R	1.000	106	0%	119	13.4%	0	-	benign(0.083)	-	-	superfamily_SSF48726
DNAJC10	54431	genome.wustl.edu	37	2	183623899	183623899	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018981.1	+1	provisional	p.Q670H	0.992	128	0%	171	31%	44	25%	benign(0.002)	tolerated(0.09)	neutral(0.296)	superfamily_Thioredoxin-like
ASNSD1	54529	genome.wustl.edu	37	2	190532636	190532636	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_019048.2	+1	validated	p.D537	1.000	159	0%	236	41.9%	17	58.8%	-	-	-	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
NAB1	4664	genome.wustl.edu	37	2	191524447	191524447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005966.3	+1	validated	p.A182V	0.987	41	0%	42	38.1%	2	0%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_NCD2
MYO1B	4430	genome.wustl.edu	37	2	192141711	192141711	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001130158.1	+1	validated	p.T30	0.675	282	0%	270	40.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEFF2	23671	genome.wustl.edu	37	2	193059167	193059167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016192.2	-1	provisional	p.M28I	1.000	43	0%	33	42.4%	0	-	benign(0.038)	tolerated(0.1)	neutral(0.288)	NULL
IDH1	3417	genome.wustl.edu	37	2	209113256	209113256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005896.2	-1	reviewed	p.E84A	1.000	127	0%	134	41%	34	55.8%	benign(0.017)	deleterious(0.02)	neutral(0.384)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
PIKFYVE	200576	genome.wustl.edu	37	2	209200594	209200594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015040.3	+1	reviewed	p.E1445G	1.000	88	0%	150	22.7%	1	0%	possibly_damaging(0.872)	deleterious(0.01)	deleterious(0.745)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215838729	215838729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173076.2	-1	reviewed	p.T1836A	1.000	126	0%	218	20.2%	0	-	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
FN1	2335	genome.wustl.edu	37	2	216245784	216245784	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_212482.1	-1	reviewed	p.G1728	1.000	195	0%	229	27.9%	15	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC23A3	151295	genome.wustl.edu	37	2	220026820	220026820	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001144890.1	-1	validated	p.R556	0.886	77	0%	78	11.5%	1	0%	-	-	-	NULL
ABCB6	10058	genome.wustl.edu	37	2	220075791	220075791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005689.1	-1	reviewed	p.P670S	1.000	46	0%	52	15.4%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBA4A	7277	genome.wustl.edu	37	2	220116931	220116931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006000.1	-1	reviewed	p.V9M	1.000	60	0%	75	37.3%	12	41.6%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PTPRN	5798	genome.wustl.edu	37	2	220161022	220161022	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002846.2	-1	reviewed	p.L812	0.913	145	0%	128	40.6%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
IRS1	3667	genome.wustl.edu	37	2	227660185	227660185	+	Silent	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005544.2	-1	reviewed	p.A1090	0.085	25	0%	33	42.4%	1	0%	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	237028961	237028961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001037131.1	+1	validated	p.T747M	0.319	28	0%	29	44.8%	1	0%	benign(0.092)	tolerated(0.08)	neutral(0.307)	superfamily_Ankyrin repeat
KIF1A	547	genome.wustl.edu	37	2	241710464	241710464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004321.4	-1	reviewed	p.R413H	1.000	8	0.000	7	0.571	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
CHL1	10752	genome.wustl.edu	37	3	424241	424241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006614.2	+1	reviewed	p.V688A	0.068	208	0%	328	18.3%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00060,superfamily_Fibronectin type III
ITPR1	3708	genome.wustl.edu	37	3	4738868	4738868	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001099952.2	+1	reviewed	p.Y1431F	1.000	41	0%	57	15.8%	0	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
GRM7	2917	genome.wustl.edu	37	3	7721751	7721751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_181874.2	+1	reviewed	p.T823A	1.000	115	0%	135	11.1%	0	-	possibly_damaging(0.809)	tolerated(0.11)	deleterious(0.576)	HMMPfam_7tm_3
C3orf24	115795	genome.wustl.edu	37	3	10146332	10146333	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173472.1	-1	validated	p.P43fs	1.000:0.995	-	-	-	-	-	-	-	-	-	NULL
SLC6A11	6538	genome.wustl.edu	37	3	10861400	10861400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014229.1	+1	provisional	p.I132T	1.000	303	0%	292	35.6%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_SNF
FBLN2	2199	genome.wustl.edu	37	3	13663358	13663358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001004019.1	+1	reviewed	p.N747D	1.000	25	0%	20	25%	0	-	benign(0.174)	tolerated(0.23)	neutral(0.058)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
XPC	7508	genome.wustl.edu	37	3	14207036	14207036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004628.4	-1	reviewed	p.C224Y	1.000	47	0%	67	44.8%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15115336	15115336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022340.2	-1	validated	p.R770W	0.935	68	0%	59	25.4%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ANKRD28	23243	genome.wustl.edu	37	3	15727542	15727542	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015199.2	-1	provisional	p.K682	1.000	31	0%	54	35.2%	1	0%	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
TOP2B	7155	genome.wustl.edu	37	3	25668727	25668727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001068.2	-1	reviewed	p.R651H	1.000	295	0%	499	20.2%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TOP2c,superfamily_Topo_IIA_cen
GPD1L	23171	genome.wustl.edu	37	3	32200539	32200539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015141.3	+1	validated	p.I264F	1.000	14	0%	16	25%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like
SUSD5	26032	genome.wustl.edu	37	3	33195512	33195512	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000412539	-1	known	p.H140L	0.960	87	0%	71	21.1%	0	-	-	-	-	NULL
CCBP2	1238	genome.wustl.edu	37	3	42907038	42907038	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001296.4	+1	reviewed	p.S348	0.746	354	0%	272	36.8%	0	-	-	-	-	superfamily_SSF81321
PRSS45	377047	genome.wustl.edu	37	3	46784572	46784572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_199183.2	-1	validated	p.S95N	0.002	58	0%	53	41.5%	0	-	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
C3orf75	54859	genome.wustl.edu	37	3	47539912	47539912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031703.2	-1	validated	p.V179A	1.000	93	0%	101	36.6%	14	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_DUF2348
CSPG5	10675	genome.wustl.edu	37	3	47618829	47618829	+	Silent	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006574.3	-1	validated	p.P229	0.889	17	0%	26	30.8%	1	100%	-	-	-	HMMPfam_Chon_Sulph_att
PLXNB1	5364	genome.wustl.edu	37	3	48462779	48462779	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001130082.1	-1	validated	p.V556	0.992	71	0%	55	32.7%	10	30%	-	-	-	NULL
COL7A1	1294	genome.wustl.edu	37	3	48604429	48604429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000094.3	-1	reviewed	p.G2713C	1.000	128	0%	88	23.9%	4	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
RNF123	63891	genome.wustl.edu	37	3	49751344	49751344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022064.2	+1	reviewed	p.R947C	1.000	11	0%	14	28.6%	9	22.2%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
IFRD2	7866	genome.wustl.edu	37	3	50325651	50325651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006764.4	-1	validated	p.V498M	0.881	26	0%	15	73.3%	26	38.4%	benign(0.089)	tolerated(0.22)	neutral(0.049)	HMMPfam_IFRD_C
DOCK3	1795	genome.wustl.edu	37	3	51412015	51412015	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004947.3	+1	validated	p.G1803	1.000	34	0%	35	11.4%	0	-	-	-	-	NULL
PHF7	51533	genome.wustl.edu	37	3	52453937	52453937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016483.4	+1	reviewed	p.R92Q	1.000	23	0%	31	22.6%	3	66.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ITIH3	3699	genome.wustl.edu	37	3	52830584	52830584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002217.3	+1	validated	p.V68I	0.208	25	0%	17	35.3%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00609,HMMPfam_VIT
CACNA1D	776	genome.wustl.edu	37	3	53834384	53834384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000720.2	+1	validated	p.V1698M	0.998	153	0%	195	27.2%	2	50%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
CCDC66	285331	genome.wustl.edu	37	3	56655847	56655850	+	RNA	DEL	AAAA	AAAA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NR_024460.1	+1	validated	NULL	0.000:0.000:0.007:0.115	-	-	-	-	-	-	-	-	-	-
FLNB	2317	genome.wustl.edu	37	3	58131666	58131666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001457.3	+1	reviewed	p.Y1815C	1.000	126	0%	105	33.3%	6	33.3%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_IG_FLMN,superfamily_Ig_E-set
ATXN7	6314	genome.wustl.edu	37	3	63975861	63975861	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001128149.2	+1	reviewed	p.G457	1.000	118	0%	82	29.3%	0	-	-	-	-	NULL
PROS1	5627	genome.wustl.edu	37	3	93598153	93598153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000313.3	-1	reviewed	p.V500I	0.000	166	0%	202	37.6%	0	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	superfamily_ConA_like_lec_gl
SENP7	57337	genome.wustl.edu	37	3	101058937	101058937	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020654.3	-1	validated	e16+2	1.000	71	0%	84	17.9%	0	-	-	-	-	-
NFKBIZ	64332	genome.wustl.edu	37	3	101571951	101571951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031419.2	+1	reviewed	p.P194Q	1.000	155	0%	169	13%	0	-	possibly_damaging(0.762)	deleterious(0.01)	deleterious(0.688)	NULL
ALCAM	214	genome.wustl.edu	37	3	105271426	105271426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001627.2	+1	validated	p.S554L	1.000	167	0%	249	35.7%	3	33.3%	possibly_damaging(0.626)	tolerated(0.42)	neutral(0.232)	NULL
CD47	961	genome.wustl.edu	37	3	107798859	107798859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001777.3	-1	reviewed	p.I127V	0.000	369	0%	481	33.1%	23	47.8%	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_V-set_CD47
BOC	91653	genome.wustl.edu	37	3	112993474	112993474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033254.2	+1	validated	p.R496Q	1.000	20	0%	22	40.9%	1	0%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SIDT1	54847	genome.wustl.edu	37	3	113327307	113327307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017699.2	+1	validated	p.M548I	1.000	263	0%	324	34.3%	0	-	possibly_damaging(0.485)	deleterious(0.01)	deleterious(0.567)	NULL
ZDHHC23	254887	genome.wustl.edu	37	3	113677268	113677268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173570.3	+1	validated	p.Y367H	1.000	59	0%	66	27.3%	0	-	benign(0.154)	tolerated(0.58)	neutral(0.018)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119120754	119120754	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020754.2	+1	reviewed	p.T385	0.000	53	0%	70	34.3%	1	0%	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119135065	119135065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020754.2	+1	reviewed	p.R1430Q	1.000	246	0%	335	39.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121409851	121409852	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004487.3	-1	validated	p.D2782fs	0.003:0.001	-	-	-	-	-	-	-	-	-	NULL
KALRN	8997	genome.wustl.edu	37	3	124211620	124211620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001024660.3	+1	reviewed	p.K1573E	1.000	139	0%	145	36.6%	0	-	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA1257	57501	genome.wustl.edu	37	3	128690195	128690195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020741.2	-1	predicted	p.T368M	0.000	32	0%	17	35.3%	1	0%	probably_damaging(0.979)	tolerated(0.1)	deleterious(0.708)	NULL
PLXND1	23129	genome.wustl.edu	37	3	129286388	129286388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015103.2	-1	validated	p.G1345S	1.000	20	0%	13	30.8%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Plexin_cytopl
RYK	6259	genome.wustl.edu	37	3	133930412	133930412	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000460933	-1	known	p.W111*	1.000	179	0.6%	264	44.7%	2	50%	possibly_damaging(0.95)	tolerated(0.16)	neutral(0.453)	HMMPfam_WIF,HMMSmart_SM00469
AMOTL2	51421	genome.wustl.edu	37	3	134090157	134090157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016201.2	-1	reviewed	p.R40M	1.000	13	0.000	8	0.625	1	0%	probably_damaging(0.981)	tolerated(0.08)	deleterious(0.726)	NULL
ANAPC13	25847	genome.wustl.edu	37	3	134204834	134204836	+	RNA	DEL	CCC	CCC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CCC	CCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NR_024400.1	-1	reviewed	NULL	0.020:0.021:0.022	-	-	-	-	-	-	-	-	-	-
STAG1	10274	genome.wustl.edu	37	3	136162183	136162183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005862.2	-1	reviewed	p.D498Y	1.000	336	0%	381	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
PRR23B	389151	genome.wustl.edu	37	3	138739038	138739038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001013650.2	-1	validated	p.E156K	0.000	37	0%	62	35.5%	1	100%	benign(0.327)	tolerated(0.15)	neutral(0.343)	HMMPfam_DUF2476
SLC9A9	285195	genome.wustl.edu	37	3	143214264	143214264	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173653.3	-1	reviewed	p.A372	0.396	313	0%	436	37.6%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
PLSCR2	57047	genome.wustl.edu	37	3	146171809	146171809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020359.1	-1	provisional	p.I155V	0.026	204	0%	220	34.5%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Scramblase
TM4SF18	116441	genome.wustl.edu	37	3	149048191	149048191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138786.3	-1	validated	p.T65A	0.034	131	0%	136	19.1%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_L6_membrane
RNF13	11342	genome.wustl.edu	37	3	149563870	149563870	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007282.4	+1	reviewed	p.L19	1.000	181	0%	218	36.7%	7	0%	-	-	-	NULL
TSC22D2	9819	genome.wustl.edu	37	3	150129038	150129038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014779.2	+1	provisional	p.N634S	1.000	57	0%	55	23.6%	3	33.3%	benign(0.047)	tolerated(0.88)	neutral(0.003)	NULL
MED12L	116931	genome.wustl.edu	37	3	151105940	151105940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_053002.4	+1	reviewed	p.K1776E	0.588	177	0%	214	27.6%	0	-	possibly_damaging(0.564)	tolerated(0.55)	neutral(0.200)	NULL
GMPS	8833	genome.wustl.edu	37	3	155652794	155652794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003875.2	+1	reviewed	p.R589H	1.000	368	0%	337	38.3%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GMP_synt_C,superfamily_GMP synthetase C-terminal dimerisation domain
SSR3	6747	genome.wustl.edu	37	3	156272850	156272850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007107.2	-1	reviewed	p.Q10R	1.000	21	0%	26	19.2%	18	0%	benign(0.071)	tolerated(0.24)	neutral(0.042)	NULL
SI	6476	genome.wustl.edu	37	3	164757724	164757724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001041.3	-1	reviewed	p.T732I	0.000	406	0%	651	26.1%	0	-	benign(0.072)	deleterious(0.02)	neutral(0.388)	HMMPfam_Glyco_hydro_31
LRRC34	151827	genome.wustl.edu	37	3	169514551	169514551	+	Missense_Mutation	SNP	C	C	T	rs143470723	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153353.4	-1	validated	p.R252H	0.298	97	0%	143	35.7%	0	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMSmart_SM00368,superfamily_RNI-like
ECT2	1894	genome.wustl.edu	37	3	172523535	172523535	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000437296	+1	known	p.A47T	0.957	85	0%	141	35.5%	6	50%	-	-	-	superfamily_PH domain-like
ZNF639	51193	genome.wustl.edu	37	3	179052171	179052171	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016331.1	+1	provisional	p.R473	1.000	96	0%	90	36.7%	8	62.5%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PARL	55486	genome.wustl.edu	37	3	183584518	183584518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018622.5	-1	reviewed	p.W119*	1.000	301	0%	254	13.4%	8	0%	-	-	-	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193130067	193130067	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032279.2	-1	validated	p.F1036	1.000	437	0%	557	33.6%	0	-	-	-	-	superfamily_Calcium ATPase transmembrane domain M
PIGG	54872	genome.wustl.edu	37	4	509772	509772	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001127178.1	+1	validated	p.R304	0.006	81	0%	69	10.1%	4	0%	-	-	-	superfamily_Alkaline phosphatase-like
NOP14	8602	genome.wustl.edu	37	4	2940640	2940640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003703.1	-1	validated	p.R831Q	0.995	33	0%	36	13.9%	10	30%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMPfam_Nop14
OTOP1	133060	genome.wustl.edu	37	4	4199447	4199447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_177998.1	-1	provisional	p.Y372H	0.969	113	0%	68	27.9%	0	-	possibly_damaging(0.924)	tolerated(0.43)	neutral(0.387)	HMMPfam_DUF270
MAN2B2	23324	genome.wustl.edu	37	4	6598876	6598876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015274.1	+1	validated	p.R365L	0.997	37	0%	34	47.1%	11	45.4%	possibly_damaging(0.921)	deleterious(0.01)	deleterious(0.776)	HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain
SORCS2	57537	genome.wustl.edu	37	4	7640154	7640154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020777.2	+1	reviewed	p.V250M	0.977	78	0%	47	34%	0	-	possibly_damaging(0.843)	tolerated(0.07)	deleterious(0.642)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
ZNF518B	85460	genome.wustl.edu	37	4	10446120	10446120	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_053042.2	-1	validated	p.P611	0.002	277	0%	281	39.5%	0	-	-	-	-	NULL
HS3ST1	9957	genome.wustl.edu	37	4	11401090	11401090	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005114.2	-1	reviewed	p.R180	0.047	27	0%	26	65.4%	4	25%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13602662	13602662	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_148894.2	-1	validated	p.V1954	0.009	193	0%	237	34.2%	0	-	-	-	-	superfamily_SSF81995
PACRGL	133015	genome.wustl.edu	37	4	20714507	20714507	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_145048.3	+1	validated	p.L155	0.998	476	0%	571	27%	3	33.3%	-	-	-	HMMPfam_ParcG
ZCCHC4	29063	genome.wustl.edu	37	4	25351168	25351170	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024936.2	+1	validated	p.I272in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CCKAR	886	genome.wustl.edu	37	4	26483639	26483639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000730.2	-1	reviewed	p.A303V	1.000	86	0%	78	35.9%	0	-	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KLF3	51274	genome.wustl.edu	37	4	38682297	38682297	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016531.5	+1	validated	p.V17	1.000	565	0%	584	40.2%	1	0%	-	-	-	NULL
RBM47	54502	genome.wustl.edu	37	4	40440697	40440697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098634.1	-1	validated	p.E72K	1.000	6	0.000	12	0.500	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SLC30A9	10463	genome.wustl.edu	37	4	42022471	42022471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006345.3	+1	validated	p.Y125H	1.000	163	0%	225	21.8%	4	25%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NFXL1	152518	genome.wustl.edu	37	4	47901059	47901059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152995.4	-1	validated	p.S302N	1.000	113	0%	163	39.9%	0	-	benign(0.33)	tolerated(0.35)	neutral(0.124)	NULL
CNGA1	1259	genome.wustl.edu	37	4	47939420	47939420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001142564.1	-1	reviewed	p.G433D	1.000	383	0%	522	28%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FRYL	285527	genome.wustl.edu	37	4	48542902	48542902	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015030.1	-1	validated	p.S1921R	1.000	164	0%	260	27.3%	0	-	benign(0.007)	tolerated(0.08)	neutral(0.300)	superfamily_ARM repeat
LOC441016	441016	genome.wustl.edu	37	4	54441976	54441976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_496693.4	+1	model	p.V82M	0.206	71	0%	60	43.3%	0	-	-	-	-	NULL
EPHA5	2044	genome.wustl.edu	37	4	66270161	66270161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004439.5	-1	reviewed	p.V574A	1.000	129	0%	213	22.1%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
UBA6	55236	genome.wustl.edu	37	4	68539456	68539456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018227.5	-1	validated	p.K169Q	1.000	162	0%	186	36.6%	0	-	possibly_damaging(0.811)	tolerated(0.25)	neutral(0.342)	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins
YTHDC1	91746	genome.wustl.edu	37	4	69202890	69202890	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031732.2	-1	validated	p.E246	0.643	207	0%	242	38%	2	0%	-	-	-	NULL
PROL1	58503	genome.wustl.edu	37	4	71275582	71275582	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021225.4	+1	reviewed	p.T179	0.004	547	0%	394	21.6%	1	0%	-	-	-	NULL
GRSF1	2926	genome.wustl.edu	37	4	71691071	71691071	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000514161	-1	known	p.C382Y	1.000	86	0%	121	24%	34	32.3%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ADAMTS3	9508	genome.wustl.edu	37	4	73169655	73169655	+	Silent	SNP	T	T	C	rs149726955	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014243.1	-1	reviewed	p.L801	0.993	332	0%	532	34.6%	0	-	-	-	-	HMMPfam_ADAM_spacer1
ADAMTS3	9508	genome.wustl.edu	37	4	73176832	73176832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014243.1	-1	reviewed	p.L663R	1.000	136	0%	297	43.1%	0	-	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74014697	74014697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032217.3	-1	reviewed	p.F467S	1.000	56	0%	58	13.8%	0	-	benign(0.331)	tolerated(0.15)	neutral(0.345)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ALB	213	genome.wustl.edu	37	4	74270103	74270103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000477.5	+1	reviewed	p.G20D	0.908	105	0%	145	46.2%	2	0%	benign(0.015)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00103
SDAD1	55153	genome.wustl.edu	37	4	76911963	76911963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018115.2	-1	validated	p.S11I	1.000	67	0%	48	35.4%	1	0%	benign(0.312)	deleterious(0.03)	neutral(0.462)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85605186	85605186	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014991.4	-1	reviewed	p.S3212	1.000	69	0%	85	36.5%	13	23%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PTPN13	5783	genome.wustl.edu	37	4	87692397	87692397	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_080685.2	+1	reviewed	p.Q1631L	0.964	42	0%	76	44.7%	0	-	possibly_damaging(0.56)	tolerated(0.05)	deleterious(0.536)	NULL
HERC3	8916	genome.wustl.edu	37	4	89599113	89599113	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014606.1	+1	provisional	e17-2	0.998	117	0%	187	33.7%	0	-	-	-	-	-
METAP1	23173	genome.wustl.edu	37	4	99962265	99962265	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015143.2	+1	validated	p.H168	0.996	46	0%	61	42.6%	17	58.8%	-	-	-	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
CENPE	1062	genome.wustl.edu	37	4	104064529	104064529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001813.2	-1	validated	p.H1727R	0.522	312	0%	289	27%	0	-	benign(0.195)	tolerated(0.34)	neutral(0.041)	NULL
TET2	54790	genome.wustl.edu	37	4	106155923	106155923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001127208.1	+1	validated	p.N275S	0.874	161	0%	179	19.6%	0	-	possibly_damaging(0.891)	deleterious(0.04)	deleterious(0.700)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113362121	113362121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001102406.1	+1	validated	p.Q1196L	1.000	331	0%	359	24%	18	0%	benign(0.282)	deleterious(0)	deleterious(0.531)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
PRSS12	8492	genome.wustl.edu	37	4	119203342	119203342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003619.2	-1	reviewed	p.F793L	0.000	324	0%	438	34.9%	2	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
METTL14	57721	genome.wustl.edu	37	4	119626803	119626803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020961.2	+1	provisional	p.R298P	1.000	339	0%	417	36.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
SEC24D	9871	genome.wustl.edu	37	4	119659424	119659424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014822.2	-1	reviewed	p.A830T	0.915	97	0%	202	34.7%	14	42.8%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
PDE5A	8654	genome.wustl.edu	37	4	120428839	120428839	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000503412	-1	known	p.A55V	1.000	76	0%	177	15.8%	1	0%	-	-	-	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
BBS7	55212	genome.wustl.edu	37	4	122756344	122756344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_176824.1	-1	reviewed	p.K489R	1.000	182	0%	243	16%	2	0%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
SH3D19	152503	genome.wustl.edu	37	4	152054227	152054227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001009555.3	-1	validated	p.E626G	1.000	163	0%	178	30.3%	2	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PET112	5188	genome.wustl.edu	37	4	152638164	152638164	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004564.2	-1	validated	p.G168	0.014	264	0%	253	36%	3	33.3%	-	-	-	HMMPfam_GatB_N
KIAA0922	23240	genome.wustl.edu	37	4	154542019	154542019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015196.3	+1	validated	p.A1226T	0.000	537	0.2%	576	30.4%	2	0%	benign(0.129)	tolerated(0.16)	neutral(0.070)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155241887	155241887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017639.3	-1	validated	p.P1100H	0.001	502	0%	648	19.1%	0	-	probably_damaging(0.955)	tolerated(0.08)	deleterious(0.699)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KLHL2	11275	genome.wustl.edu	37	4	166141163	166141163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007246.3	+1	validated	p.N35I	1.000	112	0%	143	19.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_BTB/POZ_fold
NEK1	4750	genome.wustl.edu	37	4	170398305	170398305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012224.1	-1	validated	p.T774A	0.109	56	0%	90	48.9%	1	100%	benign(0.044)	tolerated(0.1)	neutral(0.289)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170641138	170641138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001829.2	+1	validated	p.M816T	1.000	190	0%	237	13.1%	9	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
MORF4	10934	genome.wustl.edu	37	4	174537466	174537466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006792.2	-1	validated	p.A110V	1.000	668	0%	893	38.6%	0	-	-	-	-	HMMPfam_MRG
RWDD4	201965	genome.wustl.edu	37	4	184570624	184570624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152682.2	-1	validated	p.R154H	1.000	307	0%	374	40.4%	10	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TRIML1	339976	genome.wustl.edu	37	4	189068242	189068242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178556.3	+1	provisional	p.L375M	0.998	106	0%	85	37.6%	0	-	benign(0.088)	tolerated(0.22)	neutral(0.049)	HMMPfam_SPRY,HMMSmart_SPRY
AHRR	57491	genome.wustl.edu	37	5	428002	428002	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020731.3	+1	reviewed	p.R285	0.955	25	0%	37	45.9%	0	-	-	-	-	NULL
SLC6A18	348932	genome.wustl.edu	37	5	1232980	1232980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182632.2	+1	validated	p.C139Y	1.000	15	0%	21	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_2
CTNND2	1501	genome.wustl.edu	37	5	11346701	11346701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001332.2	-1	validated	p.R471C	1.000	39	0%	32	59.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO10	4651	genome.wustl.edu	37	5	16676163	16676163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012334.2	-1	validated	p.P1548L	1.000	126	0%	113	33.6%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_MyTH4
PDZD2	23037	genome.wustl.edu	37	5	32101302	32101302	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178140.2	+1	reviewed	p.S2770	0.000	47	0%	36	27.8%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ADAMTS12	81792	genome.wustl.edu	37	5	33614346	33614346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030955.2	-1	reviewed	p.T842A	0.969	78	0%	65	41.5%	0	-	benign(0.02)	tolerated(1)	neutral(0.001)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SPEF2	79925	genome.wustl.edu	37	5	35705907	35705907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024867.3	+1	validated	p.K888E	0.883	64	0%	143	20.3%	0	-	benign(0.001)	tolerated(1)	-	NULL
PRKAA1	5562	genome.wustl.edu	37	5	40764941	40764941	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_206907.3	-1	reviewed	p.W422*	1.000	133	0.8%	139	12.9%	5	0%	-	-	-	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41018486	41018486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173489.4	-1	validated	p.R907I	1.000	65	0%	89	40.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
IL6ST	3572	genome.wustl.edu	37	5	55237497	55237497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002184.2	-1	reviewed	p.H724Y	1.000	321	0%	413	41.6%	2	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
ANKRD55	79722	genome.wustl.edu	37	5	55396057	55396057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024669.2	-1	validated	p.A600T	0.005	108	0%	119	21.8%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
LOC345645	345645	genome.wustl.edu	37	5	55571340	55571340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002342506.1	-1	model	p.S345N	1.000	71	0%	81	25.9%	0	-	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP3K1	4214	genome.wustl.edu	37	5	56177039	56177039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005921.1	+1	validated	p.A770V	1.000	121	0%	134	32.8%	2	100%	possibly_damaging(0.621)	deleterious(0.01)	deleterious(0.622)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56177505	56177505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005921.1	+1	validated	p.M826I	1.000	222	0%	290	39%	2	50%	benign(0.431)	tolerated(0.12)	neutral(0.401)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56177920	56177921	+	Frame_Shift_Ins	INS	-	-	AGTG	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005921.1	+1	validated	p.C966fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56181859	56181859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005921.1	+1	validated	p.H1361Q	1.000	184	0%	283	25.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ADAMTS6	11174	genome.wustl.edu	37	5	64766674	64766674	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_197941.2	-1	reviewed	p.C131	1.000	97	0%	106	17.9%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
PIK3R1	5295	genome.wustl.edu	37	5	67591106	67591106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_181523.1	+1	reviewed	p.K567E	1.000	140	0%	220	39.5%	9	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCNB1	891	genome.wustl.edu	37	5	68464151	68464152	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031966.2	+1	reviewed	p.S116fs	0.004:0.000	-	-	-	-	-	-	-	-	-	NULL
ARSB	411	genome.wustl.edu	37	5	78260315	78260315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000046.3	-1	reviewed	p.G205V	0.985	72	0%	105	29.5%	1	100%	possibly_damaging(0.884)	deleterious(0.02)	deleterious(0.728)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
VCAN	1462	genome.wustl.edu	37	5	82835957	82835957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004385.4	+1	reviewed	p.E2379K	0.001	126	0%	233	29.2%	2	0%	possibly_damaging(0.784)	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110439580	110439580	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_139281.2	+1	reviewed	p.Q287	1.000	124	0%	157	22.9%	0	-	-	-	-	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like
ZRSR1	7310	genome.wustl.edu	37	5	112228669	112228669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000391338	+1	known	p.R445C	0.147	41	0%	54	16.7%	0	-	unknown(0)	deleterious(0.03)	-	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127485701	127485701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001046.2	+1	validated	p.V673A	1.000	100	0%	194	34%	6	0%	benign(0.008)	tolerated(0.52)	neutral(0.009)	HMMPfam_AA_permease
SEC24A	10802	genome.wustl.edu	37	5	134010832	134010832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021982.1	+1	validated	p.M359T	1.000	116	0%	109	38.5%	1	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_beta-sandwich domain of Sec23/24
TGFBI	7045	genome.wustl.edu	37	5	135391478	135391478	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000358.2	+1	reviewed	p.D507V	0.999	18	0%	29	41.4%	31	0%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	superfamily_FAS1 domain
KLHL3	26249	genome.wustl.edu	37	5	136961467	136961467	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017415.2	-1	validated	p.N570	1.000	91	0%	103	31.1%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612
CXXC5	51523	genome.wustl.edu	37	5	139060877	139060879	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016463.7	+1	provisional	p.K259in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-CXXC
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139917103	139917103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020690.4	+1	reviewed	p.P2386L	1.000	157	0%	189	48.1%	19	42.1%	probably_damaging(1)	tolerated(0.62)	deleterious(0.504)	NULL
IK	3550	genome.wustl.edu	37	5	140032593	140032594	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006083.3	+1	reviewed	p.R93fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RED_N
PCDHA4	56144	genome.wustl.edu	37	5	140188965	140188965	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018907.2	+1	reviewed	p.A731	0.000	28	0%	59	49.2%	1	0%	-	-	-	NULL
PCDHA5	56143	genome.wustl.edu	37	5	140201403	140201403	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018908.2	+1	reviewed	p.L15	0.965	31	0%	52	38.5%	0	-	-	-	-	NULL
PCDHB17	54661	genome.wustl.edu	37	5	140537110	140537110	+	RNA	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NR_001280.1	+1	provisional	NULL	0.999	83	0%	164	36%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
PCDHB7	56129	genome.wustl.edu	37	5	140553993	140553993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018940.2	+1	reviewed	p.A526E	0.030	55	0%	80	35%	0	-	benign(0.033)	tolerated(1)	neutral(0.002)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB10	56126	genome.wustl.edu	37	5	140573817	140573817	+	Silent	SNP	G	G	A	rs17844602		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018930.3	+1	reviewed	p.P564	0.064	24	0%	55	30.9%	2	50%	-	-	-	superfamily_Cadherin
PCDHGA1	56114	genome.wustl.edu	37	5	140711187	140711187	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018912.2	+1	reviewed	p.Y312	0.003	133	0%	123	18.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140764619	140764619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018920.2	+1	reviewed	p.R718H	0.979	35	0%	41	19.5%	0	-	possibly_damaging(0.496)	tolerated(0.15)	neutral(0.406)	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140810496	140810496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003735.2	+1	reviewed	p.R57Q	0.000	147	0%	64	40.6%	0	-	benign(0.011)	tolerated(0.63)	neutral(0.004)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140812017	140812017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003735.2	+1	reviewed	p.Y564C	1.000	336	0.3%	97	23.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140870377	140870377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018929.2	+1	reviewed	p.Y524H	1.000	190	0%	205	25.9%	0	-	possibly_damaging(0.767)	tolerated(0.31)	neutral(0.311)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141052465	141052465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022481.5	-1	reviewed	p.L374P	0.996	59	0%	37	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PCDH1	5097	genome.wustl.edu	37	5	141248319	141248319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032420.2	-1	reviewed	p.R240S	1.000	118	0%	90	22.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SPINK9	643394	genome.wustl.edu	37	5	147719256	147719256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001040433.1	+1	provisional	p.V81A	0.072	161	0%	222	10.8%	0	-	benign(0.093)	tolerated(0.34)	neutral(0.030)	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895
GEMIN5	25929	genome.wustl.edu	37	5	154308128	154308128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015465.3	-1	validated	p.W291*	1.000	372	0%	301	35.5%	0	-	-	-	-	superfamily_WD40 repeat-like
ATP10B	23120	genome.wustl.edu	37	5	160059310	160059310	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025153.2	-1	validated	p.C482	0.019	134	0%	126	44.4%	0	-	-	-	-	superfamily_HAD-like
ERGIC1	57222	genome.wustl.edu	37	5	172336672	172336672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031711.2	+1	reviewed	p.V53A	1.000	81	0%	54	37%	26	50%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176824839	176824839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003052.4	+1	reviewed	p.V491A	0.944	25	0%	42	26.2%	0	-	benign(0.194)	deleterious(0)	neutral(0.463)	HMMPfam_Na_Pi_cotrans
CLK4	57396	genome.wustl.edu	37	5	178030861	178030861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020666.2	-1	reviewed	p.R430H	1.000	224	0%	259	32%	6	16.6%	benign(0.024)	tolerated(0.22)	neutral(0.043)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZFP2	80108	genome.wustl.edu	37	5	178358395	178358395	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030613.2	+1	provisional	p.S27	0.001	160	0%	152	27.6%	2	100%	-	-	-	NULL
GRM6	2916	genome.wustl.edu	37	5	178416307	178416307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000843.3	-1	reviewed	p.S371N	0.998	45	0%	32	12.5%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMPfam_ANF_receptor,superfamily_SSF53822
ZNF879	345462	genome.wustl.edu	37	5	178459904	178459904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001136116.1	+1	provisional	p.N319D	0.453	44	0%	38	15.8%	0	-	possibly_damaging(0.455)	tolerated(0.21)	neutral(0.193)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR2V2	285659	genome.wustl.edu	37	5	180582337	180582337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_206880.1	+1	provisional	p.H132R	0.270	247	0%	213	39%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
ECI2	10455	genome.wustl.edu	37	6	4125559	4125559	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006117.2	-1	validated	p.A210	0.946	116	0%	133	17.3%	58	43.1%	-	-	-	HMMPfam_ECH,superfamily_SSF52096
LRRC16A	55604	genome.wustl.edu	37	6	25479441	25479441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000377969	+1	known	p.D166V	0.003	534	0%	715	23.2%	0	-	benign(0)	-	-	NULL
SCGN	10590	genome.wustl.edu	37	6	25661872	25661872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006998.3	+1	reviewed	p.E82D	1.000	89	0%	115	19.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_EF-hand
HIST1H1T	3010	genome.wustl.edu	37	6	26107814	26107814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005323.3	-1	reviewed	p.A170T	0.092	195	0%	182	42.3%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
ZNF165	7718	genome.wustl.edu	37	6	28053633	28053633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003447.3	+1	reviewed	p.E125D	0.753	80	0%	66	15.2%	3	0%	possibly_damaging(0.945)	tolerated(0.22)	neutral(0.431)	HMMPfam_SCAN,HMMSmart_SM00431
OR2J3	442186	genome.wustl.edu	37	6	29079789	29079789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001005216.2	+1	validated	p.T41I	0.152	532	0%	681	37%	0	-	probably_damaging(0.963)	tolerated(0.14)	deleterious(0.655)	superfamily_SSF81321
OR2H2	7932	genome.wustl.edu	37	6	29555743	29555743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007160.3	+1	provisional	p.P8S	0.000	605	0%	504	24%	1	0%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_Family A G protein-coupled receptor-like
ZFP57	346171	genome.wustl.edu	37	6	29641021	29641021	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001109809.2	-1	reviewed	p.G269	0.000	219	0%	180	42.8%	0	-	-	-	-	NULL
PPP1R10	5514	genome.wustl.edu	37	6	30572503	30572503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002714.2	-1	reviewed	p.F322L	0.998	353	0%	244	35.2%	10	60%	probably_damaging(0.985)	tolerated(1)	neutral(0.432)	NULL
DHX16	8449	genome.wustl.edu	37	6	30630402	30630402	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003587.4	-1	reviewed	e9+2	1.000	42	0%	55	23.6%	0	-	-	-	-	-
B3GALT4	8705	genome.wustl.edu	37	6	33246117	33246118	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003782.3	+1	reviewed	p.V309fs	0.973:0.968	-	-	-	-	-	-	-	-	-	HMMPfam_Galactosyl_T
UHRF1BP1	54887	genome.wustl.edu	37	6	34825928	34825928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017754.3	+1	validated	p.R599W	0.000	147	0%	186	45.7%	0	-	possibly_damaging(0.451)	deleterious(0.02)	deleterious(0.530)	NULL
MAPK13	5603	genome.wustl.edu	37	6	36107130	36107130	+	Missense_Mutation	SNP	C	C	T	rs183038663	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002754.3	+1	reviewed	p.R360W	0.996	116	0%	76	15.8%	8	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38997986	38997986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001371.2	+1	validated	p.V4431M	0.996	127	0%	118	39%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Dynein_heavy
LRFN2	57497	genome.wustl.edu	37	6	40360418	40360418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020737.1	-1	provisional	p.T545M	0.998	55	0%	36	44.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
TRERF1	55809	genome.wustl.edu	37	6	42236518	42236518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033502.2	-1	reviewed	p.P271T	0.592	59	0%	60	10%	0	-	possibly_damaging(0.771)	deleterious(0.01)	deleterious(0.692)	NULL
ABCC10	89845	genome.wustl.edu	37	6	43412999	43412999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033450.2	+1	reviewed	p.T965P	0.918	44	4.5%	42	19%	6	16.6%	benign(0.408)	deleterious(0.05)	deleterious(0.477)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
PKHD1	5314	genome.wustl.edu	37	6	51890943	51890943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138694.3	-1	reviewed	p.S1222N	0.255	124	0%	118	21.2%	0	-	possibly_damaging(0.444)	tolerated(0.54)	neutral(0.152)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
FAM83B	222584	genome.wustl.edu	37	6	54806605	54806605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001010872.1	+1	validated	p.S946P	0.178	199	0%	237	36.7%	0	-	possibly_damaging(0.462)	tolerated(0.08)	neutral(0.452)	NULL
DST	667	genome.wustl.edu	37	6	56417655	56417655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015548.4	-1	reviewed	p.L2689R	0.973	180	0%	248	47.6%	0	-	probably_damaging(1)	-	-	NULL
ZNF451	26036	genome.wustl.edu	37	6	57012757	57012757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031623.2	+1	validated	p.C625Y	1.000	249	0%	353	41.4%	2	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00355
UBE3D	90025	genome.wustl.edu	37	6	83767616	83767616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198920.1	-1	provisional	p.C68Y	0.002	52	0%	73	37%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_DUF2351
CNR1	1268	genome.wustl.edu	37	6	88854350	88854350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016083.4	-1	reviewed	p.Y215C	1.000	48	0%	44	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
MDN1	23195	genome.wustl.edu	37	6	90397136	90397136	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014611.1	-1	provisional	p.R3793*	1.000	98	0%	82	45.1%	0	-	-	-	-	NULL
GRIK2	2898	genome.wustl.edu	37	6	102247567	102247567	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021956.4	+1	reviewed	p.V332	1.000	152	0%	249	23.7%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
FOXO3	2309	genome.wustl.edu	37	6	108985779	108985779	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001455.3	+1	reviewed	p.Q581	1.000	372	0%	303	16.2%	2	0%	-	-	-	NULL
ARMC2	84071	genome.wustl.edu	37	6	109282895	109282895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032131.4	+1	validated	p.E679G	1.000	109	0%	111	41.4%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	superfamily_ARM-type_fold
GPRC6A	222545	genome.wustl.edu	37	6	117114362	117114362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_148963.2	-1	validated	p.R575M	0.742	131	0%	210	40%	0	-	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	NULL
L3MBTL3	84456	genome.wustl.edu	37	6	130374065	130374065	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032438.1	+1	validated	p.R171	1.000	195	0%	227	15.9%	2	0%	-	-	-	NULL
ENPP1	5167	genome.wustl.edu	37	6	132198279	132198279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006208.2	+1	reviewed	p.L624P	1.000	47	0%	50	20%	1	100%	benign(0.004)	tolerated(0.06)	neutral(0.323)	NULL
VNN1	8876	genome.wustl.edu	37	6	133013434	133013434	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004666.2	-1	reviewed	p.N372	0.286	296	0%	364	35.2%	0	-	-	-	-	NULL
SLC2A12	154091	genome.wustl.edu	37	6	134350716	134350716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_145176.2	-1	validated	p.V83M	1.000	145	0%	165	38.8%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
MAP3K5	4217	genome.wustl.edu	37	6	137017134	137017134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005923.3	-1	reviewed	p.A346D	1.000	129	0%	179	35.8%	0	-	possibly_damaging(0.877)	deleterious(0.01)	deleterious(0.747)	NULL
STX11	8676	genome.wustl.edu	37	6	144508153	144508153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003764.3	+1	reviewed	p.A130V	0.015	15	0%	17	41.2%	4	0%	benign(0.027)	tolerated(0.39)	neutral(0.018)	HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare
GRM1	2911	genome.wustl.edu	37	6	146755360	146755360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000838.3	+1	reviewed	p.A1005T	0.974	66	0%	91	17.6%	0	-	benign(0.005)	tolerated(0.17)	neutral(0.059)	NULL
LATS1	9113	genome.wustl.edu	37	6	150004490	150004490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004690.2	-1	reviewed	p.P579S	0.012	286	0%	369	36.6%	2	0%	benign(0)	tolerated(0.94)	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152831455	152831455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182961.2	-1	reviewed	p.A152T	0.061	94	0%	112	43.8%	0	-	benign(0)	tolerated(0.83)	neutral(0.001)	superfamily_Calponin-homology domain CH-domain
SYNJ2	8871	genome.wustl.edu	37	6	158507957	158507957	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003898.3	+1	reviewed	p.S1093	1.000	36	0%	36	33.3%	1	0%	-	-	-	NULL
RSPH3	83861	genome.wustl.edu	37	6	159399321	159399321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031924.4	-1	validated	p.Y448C	0.003	47	0%	75	29.3%	2	50%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	HMMPfam_Radial_spoke_3
TCP10L2	401285	genome.wustl.edu	37	6	167590622	167590622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001145121.1	+1	inferred	p.K166N	0.043	112	0%	127	22%	0	-	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	NULL
TCP10	6953	genome.wustl.edu	37	6	167791443	167791443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004610.3	-1	validated	p.K139N	0.043	234	0%	170	18.2%	0	-	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168352391	168352391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001040001.1	+1	validated	p.T1445A	0.001	157	0%	204	27%	16	37.5%	benign(0)	tolerated(1)	-	NULL
PHF10	55274	genome.wustl.edu	37	6	170104123	170104123	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018288.3	-1	reviewed	p.R491	1.000	48	0%	70	27.1%	18	44.4%	-	-	-	NULL
FAM120B	84498	genome.wustl.edu	37	6	170627269	170627269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032448.1	+1	provisional	p.I264T	0.764	143	0%	187	27.3%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
IQCE	23288	genome.wustl.edu	37	7	2629712	2629712	+	Missense_Mutation	SNP	G	G	A	rs113031380		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152558.3	+1	validated	p.A406T	0.000	23	0%	17	41.2%	0	-	benign(0.159)	tolerated(0.35)	neutral(0.035)	NULL
GNA12	2768	genome.wustl.edu	37	7	2771199	2771199	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007353.2	-1	validated	p.S254	0.437	66	0%	60	55%	13	23%	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
WIPI2	26100	genome.wustl.edu	37	7	5257572	5257572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015610.3	+1	validated	p.P199L	1.000	228	0.4%	219	36.1%	17	35.2%	possibly_damaging(0.659)	tolerated(0.08)	deleterious(0.532)	HMMSmart_SM00320,superfamily_WD40 repeat-like
AIMP2	7965	genome.wustl.edu	37	7	6054826	6054826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006303.3	+1	validated	p.I62S	1.000	198	0%	131	41.2%	10	30%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DAGLB	221955	genome.wustl.edu	37	7	6474500	6474500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_139179.3	-1	validated	p.S191C	0.590	266	0%	271	23.6%	1	0%	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	NULL
NDUFA4	4697	genome.wustl.edu	37	7	10977773	10977773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002489.2	-1	reviewed	p.W45R	1.000	68	0%	66	33.3%	150	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NADH_ub_rd_NUML
MACC1	346389	genome.wustl.edu	37	7	20199043	20199043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182762.3	-1	validated	p.L314W	0.000	106	0%	118	35.6%	0	-	possibly_damaging(0.758)	deleterious(0.02)	deleterious(0.663)	NULL
SP4	6671	genome.wustl.edu	37	7	21521639	21521639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003112.3	+1	validated	p.R669C	1.000	260	0%	392	41.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
AQP1	358	genome.wustl.edu	37	7	30961715	30961715	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000441328	+1	known	e2-2	1.000	43	0%	33	36.4%	10	0%	probably_damaging(0.999)	tolerated(0.64)	deleterious(0.493)	-
NEUROD6	63974	genome.wustl.edu	37	7	31378551	31378551	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022728.2	-1	provisional	p.N111I	1.000	420	0%	433	22.6%	0	-	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CCDC129	223075	genome.wustl.edu	37	7	31682355	31682355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_194300.2	+1	validated	p.D457E	0.001	147	0%	152	41.4%	0	-	possibly_damaging(0.478)	tolerated(0.67)	neutral(0.161)	NULL
AEBP1	165	genome.wustl.edu	37	7	44153790	44153790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001129.3	+1	reviewed	p.E1136G	0.002	40	0%	36	36.1%	53	0%	unknown(0)	deleterious(0)	-	NULL
SEC61G	23480	genome.wustl.edu	37	7	54823478	54823478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001012456.1	-1	reviewed	p.I64T	1.000	79	0%	74	29.7%	130	33%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	HMMPfam_SecE,superfamily_Preprotein translocase SecE subunit
BAZ1B	9031	genome.wustl.edu	37	7	72912916	72912916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032408.3	-1	validated	p.S161N	1.000	519	0%	537	11.4%	2	0%	probably_damaging(0.99)	deleterious(0.05)	deleterious(0.787)	NULL
PMS2P3	5387	genome.wustl.edu	37	7	75155293	75155293	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000301956	-1	known	e3-1	0.026	135	0%	127	35.4%	0	-	-	-	-	-
GNAI1	2770	genome.wustl.edu	37	7	79842162	79842162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002069.5	+1	validated	p.T284I	1.000	280	0%	327	20.5%	15	60%	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCLO	27445	genome.wustl.edu	37	7	82580261	82580261	+	Missense_Mutation	SNP	C	C	T	rs75551727	byCluster;by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033026.5	-1	validated	p.D3215N	1.000	128	0%	200	48%	0	-	probably_damaging(0.995)	-	-	NULL
CDK14	5218	genome.wustl.edu	37	7	90585092	90585092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012395.2	+1	validated	p.L285I	1.000	285	0%	497	33.8%	0	-	benign(0.055)	deleterious(0)	neutral(0.448)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FZD1	8321	genome.wustl.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003505.1	+1	reviewed	p.92in_frame_insP	0.006:0.934	-	-	-	-	-	-	-	-	-	NULL
PEX1	5189	genome.wustl.edu	37	7	92148363	92148363	+	Silent	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000466.2	-1	reviewed	p.V101	0.001	107	0%	135	19.3%	5	40%	-	-	-	superfamily_ADC-like
SAMD9L	219285	genome.wustl.edu	37	7	92761093	92761093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152703.2	-1	validated	p.K1398E	0.717	718	0%	1263	11.7%	5	0%	probably_damaging(0.985)	tolerated(0.06)	deleterious(0.754)	NULL
PON1	5444	genome.wustl.edu	37	7	94928374	94928374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000446.5	-1	reviewed	p.V317A	0.939	262	0%	306	41.5%	0	-	possibly_damaging(0.59)	deleterious(0)	deleterious(0.648)	superfamily_Calcium-dependent phosphotriesterase
DLX5	1749	genome.wustl.edu	37	7	96650221	96650221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005221.5	-1	reviewed	p.L233F	1.000	45	0%	46	26.1%	403	49.3%	benign(0.098)	tolerated(0.49)	neutral(0.018)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97816303	97816303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014916.3	+1	reviewed	p.N331D	1.000	323	0%	298	10.4%	0	-	probably_damaging(0.986)	tolerated(0.36)	neutral(0.455)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRRAP	8295	genome.wustl.edu	37	7	98506352	98506352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003496.2	+1	validated	p.P373S	1.000	4	0.000	7	0.571	0	-	unknown(0)	deleterious(0)	-	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98574392	98574392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003496.2	+1	validated	p.Q2724R	1.000	49	0%	66	33.3%	4	50%	benign(0.008)	tolerated(0.35)	neutral(0.021)	superfamily_ARM repeat
SMURF1	57154	genome.wustl.edu	37	7	98649897	98649897	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020429.1	-1	reviewed	p.R218*	0.913	178	0%	144	21.5%	1	0%	-	-	-	NULL
SMURF1	57154	genome.wustl.edu	37	7	98658236	98658236	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020429.1	-1	reviewed	p.N63	0.997	50	0%	46	13%	2	0%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ZNF789	285989	genome.wustl.edu	37	7	99084728	99084728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_213603.2	+1	validated	p.T299A	0.000	158	0%	136	32.4%	8	50%	benign(0.085)	tolerated(0.55)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF789	285989	genome.wustl.edu	37	7	99084993	99084993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_213603.2	+1	validated	p.H387R	0.978	328	0%	266	33.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZKSCAN5	23660	genome.wustl.edu	37	7	99103802	99103802	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014569.3	+1	reviewed	p.T45	0.000	216	0%	181	39.8%	0	-	-	-	-	HMMPfam_SCAN
ZSCAN21	7589	genome.wustl.edu	37	7	99654858	99654858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_145914.2	+1	validated	p.E77K	0.993	44	0%	35	40%	2	50%	possibly_damaging(0.776)	deleterious(0.02)	deleterious(0.672)	HMMPfam_SCAN,HMMSmart_SM00431
CBLL1	79872	genome.wustl.edu	37	7	107398718	107398718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024814.2	+1	validated	p.M191V	0.999	389	0%	590	34.9%	7	42.8%	benign(0.07)	tolerated(0.6)	neutral(0.009)	NULL
POT1	25913	genome.wustl.edu	37	7	124475399	124475399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015450.2	-1	reviewed	p.H480R	0.000	287	0%	400	25%	2	50%	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
COPG2	26958	genome.wustl.edu	37	7	130147577	130147577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012133.4	-1	validated	p.I351M	0.988	87	0%	86	34.9%	20	25%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131864575	131864575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020911.1	-1	validated	p.L1249F	1.000	46	0%	26	34.6%	0	-	possibly_damaging(0.944)	deleterious(0.03)	deleterious(0.753)	NULL
LUC7L2	51631	genome.wustl.edu	37	7	139094365	139094366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016019.2	+1	validated	p.R252fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_LUC7
TBXAS1	6916	genome.wustl.edu	37	7	139719853	139719853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001061.4	+1	reviewed	p.A520V	0.999	133	0%	146	16.4%	8	0%	benign(0.056)	tolerated(0.12)	neutral(0.264)	HMMPfam_p450,superfamily_Cytochrome P450
FAM131B	9715	genome.wustl.edu	37	7	143054034	143054034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001031690.2	-1	validated	p.A231V	1.000	44	0%	39	43.6%	1	0%	possibly_damaging(0.786)	tolerated(0.43)	neutral(0.308)	NULL
ZNF786	136051	genome.wustl.edu	37	7	148768380	148768380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152411.3	-1	validated	p.M495T	0.000	8	0.000	15	0.533	5	80%	benign(0.042)	tolerated(0.62)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288576	100288576	genome.wustl.edu	37	7	148963813	148963813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002342804.1	-1	model	p.A68V	0.860	133	0%	147	34.7%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
ACTR3B	57180	genome.wustl.edu	37	7	152513583	152513583	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020445.4	+1	validated	p.A150	0.121	19	0%	24	29.2%	4	50%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PAXIP1	22976	genome.wustl.edu	37	7	154785478	154785478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007349.3	-1	reviewed	p.P73H	1.000	44	0%	59	20.3%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_BRCT,superfamily_BRCT domain
ZNF596	169270	genome.wustl.edu	37	8	196207	196207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001042415.1	+1	validated	p.K454E	0.871	187	0%	199	11.1%	2	0%	benign(0.085)	deleterious(0.02)	neutral(0.389)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
CSMD1	64478	genome.wustl.edu	37	8	2876123	2876123	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033225.5	-1	validated	p.G2636	0.677	336	0%	318	28%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
OR7E8P	346708	genome.wustl.edu	37	8	12542458	12542458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000317826	-1	known	p.D77N	0.682	54	0%	54	29.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LZTS1	11178	genome.wustl.edu	37	8	20107427	20107427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021020.2	-1	reviewed	p.K533E	0.995	25	0%	43	30.2%	0	-	benign(0.014)	tolerated(0.76)	neutral(0.002)	HMMPfam_Fez1
HR	55806	genome.wustl.edu	37	8	21984755	21984755	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005144.4	-1	reviewed	p.V400	0.000	14	0%	14	50%	0	-	-	-	-	NULL
EBF2	64641	genome.wustl.edu	37	8	25744346	25744346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022659.2	-1	validated	p.G312C	1.000	132	0%	152	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
ADRA1A	148	genome.wustl.edu	37	8	26722280	26722280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033303.3	-1	reviewed	p.A69	0.278	82	0%	69	43.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
WHSC1L1	54904	genome.wustl.edu	37	8	38187309	38187309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_023034.1	-1	reviewed	p.Y390H	1.000	162	0%	149	32.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tudor/PWWP/MBT
ADAM18	8749	genome.wustl.edu	37	8	39502951	39502951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014237.1	+1	reviewed	p.C335Y	0.669	113	0%	199	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PRKDC	5591	genome.wustl.edu	37	8	48719714	48719714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000314191	-1	known	p.D3243G	0.948	104	0%	82	36.6%	4	0%	benign(0.196)	deleterious(0.03)	neutral(0.383)	HMMPfam_FAT
PRKDC	5591	genome.wustl.edu	37	8	48840392	48840392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000314191	-1	known	p.L733P	0.982	49	0%	76	30.3%	0	-	benign(0.355)	deleterious(0)	deleterious(0.557)	superfamily_ARM repeat
TOX	9760	genome.wustl.edu	37	8	59764337	59764337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014729.2	-1	reviewed	p.T147A	0.002	158	0%	226	19.5%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
CA8	767	genome.wustl.edu	37	8	61144862	61144862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004056.4	-1	reviewed	p.I165S	1.000	253	0%	340	17.6%	7	42.8%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
C8orf34	116328	genome.wustl.edu	37	8	69358654	69358654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_052958.1	+1	predicted	p.A78V	1.000	182	0%	322	38.2%	2	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLCO5A1	81796	genome.wustl.edu	37	8	70744829	70744829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030958.2	-1	reviewed	p.R27M	0.000	30	0%	35	17.1%	0	-	possibly_damaging(0.502)	deleterious(0.04)	deleterious(0.516)	NULL
NCOA2	10499	genome.wustl.edu	37	8	71036305	71036305	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006540.2	-1	validated	p.Q1369	0.994	32	0%	26	42.3%	4	0%	-	-	-	NULL
NCOA2	10499	genome.wustl.edu	37	8	71041001	71041001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006540.2	-1	validated	p.G1180D	1.000	167	0%	220	41.4%	3	100%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	NULL
LY96	23643	genome.wustl.edu	37	8	74903756	74903756	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015364.3	+1	validated	p.S27A	0.979	441	0%	543	37.8%	2	0%	possibly_damaging(0.486)	deleterious(0)	deleterious(0.606)	NULL
RIPK2	8767	genome.wustl.edu	37	8	90777651	90777651	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003821.5	+1	reviewed	p.N137I	1.000	297	0%	380	40.5%	11	36.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RUNX1T1	862	genome.wustl.edu	37	8	92972532	92972532	+	Missense_Mutation	SNP	C	C	G	rs57930555		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_175634.1	-1	reviewed	p.A585P	1.000	31	0%	32	18.8%	0	-	unknown(0)	tolerated(0.21)	-	NULL
POP1	10940	genome.wustl.edu	37	8	99170095	99170095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015029.2	+1	reviewed	p.H891Y	0.005	220	0%	227	35.7%	1	0%	benign(0.317)	tolerated(1)	neutral(0.099)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100123423	100123423	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017890.3	+1	reviewed	p.D226	0.999	326	0.3%	392	25.3%	1	0%	-	-	-	NULL
FZD6	8323	genome.wustl.edu	37	8	104337530	104337530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003506.3	+1	reviewed	p.V399A	0.995	383	0%	573	38.6%	9	22.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Frizzled
DCAF13	25879	genome.wustl.edu	37	8	104432505	104432505	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015420.6	+1	validated	p.Y180	1.000	70	0%	65	16.9%	4	25%	-	-	-	superfamily_WD40_like
RIMS2	9699	genome.wustl.edu	37	8	104940075	104940075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001100117.1	+1	validated	p.Q734H	1.000	37	0%	36	25%	0	-	possibly_damaging(0.798)	tolerated(0.35)	neutral(0.321)	NULL
COL14A1	7373	genome.wustl.edu	37	8	121262980	121262980	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021110.1	+1	validated	p.D909	0.488	165	0%	126	35.7%	4	25%	-	-	-	superfamily_Fibronectin type III
DERL1	79139	genome.wustl.edu	37	8	124031490	124031490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024295.4	-1	validated	p.F188V	1.000	92	0%	76	32.9%	13	38.4%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	HMMPfam_DER1
LOC100289165	100289165	genome.wustl.edu	37	8	124658060	124658060	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002342868.1	+1	model	p.G78*	1.000	148	0%	156	24.4%	0	-	-	-	-	NULL
LRRC6	23639	genome.wustl.edu	37	8	133627323	133627323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012472.3	-1	provisional	p.D312G	1.000	227	0%	211	12.8%	0	-	possibly_damaging(0.694)	tolerated(0.07)	deleterious(0.568)	NULL
WISP1	8840	genome.wustl.edu	37	8	134239938	134239938	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003882.2	+1	reviewed	p.S363	0.204	56	0%	48	10.4%	0	-	-	-	-	HMMPfam_Cys_knot
COL22A1	169044	genome.wustl.edu	37	8	139601592	139601592	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000341807	-1	known	p.P824S	0.722	37	0%	37	35.1%	0	-	-	-	-	HMMPfam_Collagen
EIF2C2	27161	genome.wustl.edu	37	8	141542517	141542517	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012154.3	-1	reviewed	p.T816I	0.998	24	0%	18	27.8%	1	100%	-	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	396912	396912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_203447.3	+1	reviewed	p.A965V	1.000	99	0%	92	32.6%	7	28.5%	benign(0.124)	tolerated(0.3)	neutral(0.038)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5944905	5944905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001017969.2	-1	validated	p.E783G	1.000	21	0%	29	27.6%	2	0%	possibly_damaging(0.875)	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968374	5968374	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001017969.2	-1	validated	p.Y619	0.991	254	0.4%	365	24.9%	2	100%	-	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	6007565	6007565	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001017969.2	-1	validated	p.L75	0.998	14	0%	20	40%	1	0%	-	-	-	NULL
MPDZ	8777	genome.wustl.edu	37	9	13109031	13109031	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003829.3	-1	validated	p.L1961	0.938	25	0%	37	16.2%	5	0%	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13186353	13186353	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003829.3	-1	validated	p.K799	1.000	24	0%	33	42.4%	1	0%	-	-	-	superfamily_PDZ domain-like
PSIP1	11168	genome.wustl.edu	37	9	15472718	15472718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001128217.1	-1	validated	p.A297T	0.938	221	0%	315	37.8%	14	28.5%	benign(0.036)	tolerated(0.12)	neutral(0.263)	NULL
LOC402360	402360	genome.wustl.edu	37	9	23682506	23682506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002342894.1	+1	model	p.D183N	0.435	14	0%	13	53.8%	0	-	-	-	-	NULL
SIT1	27240	genome.wustl.edu	37	9	35650186	35650186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014450.2	-1	validated	p.A118T	0.012	87	0%	86	34.9%	8	0%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37746073	37746073	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014907.2	+1	validated	p.Q1348	0.978	121	0%	122	43.4%	0	-	-	-	-	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37777669	37777669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144964.2	+1	validated	p.G306R	0.967	86	0%	89	18%	5	0%	benign(0.003)	tolerated(0.97)	-	HMMPfam_tRNA_m1G_MT
PTAR1	375743	genome.wustl.edu	37	9	72338359	72338359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001099666.1	-1	validated	p.A277E	0.025	259	0%	435	27.8%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_Prenyl_trans
TMEM2	23670	genome.wustl.edu	37	9	74365098	74365098	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013390.2	-1	validated	p.P64	0.368	107	0%	147	40.1%	0	-	-	-	-	NULL
GNAQ	2776	genome.wustl.edu	37	9	80336387	80336387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002072.2	-1	provisional	p.K311T	1.000	98	0%	140	33.6%	1	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
C9orf170	401535	genome.wustl.edu	37	9	89771650	89771650	+	Silent	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001001709.2	+1	validated	p.R111	0.000	178	0%	203	10.8%	0	-	-	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90321260	90321260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004938.2	+1	reviewed	p.A1092T	0.997	31	0%	21	47.6%	31	35.4%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
FAM22G	441457	genome.wustl.edu	37	9	99694590	99694591	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001045477.2	+1	validated	p.P202fs	0.004:0.003	-	-	-	-	-	-	-	-	-	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692762	100692762	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018437.3	-1	validated	p.A305	0.960	377	0.3%	340	16.8%	0	-	-	-	-	NULL
ACTL7B	10880	genome.wustl.edu	37	9	111617182	111617182	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006686.3	-1	reviewed	p.G343	0.809	26	0%	23	39.1%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DNAJC25	548645	genome.wustl.edu	37	9	114411752	114411752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001015882.2	+1	provisional	p.S170I	1.000	38	0%	53	13.2%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PRPF4	9128	genome.wustl.edu	37	9	116041388	116041388	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004697.3	+1	provisional	p.E124	1.000	281	0%	259	21.2%	0	-	-	-	-	HMMSmart_SM00500,HMMPfam_PRP4
PRPF4	9128	genome.wustl.edu	37	9	116053083	116053083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004697.3	+1	provisional	p.N418D	1.000	185	0%	141	24.8%	12	8.3%	benign(0.172)	tolerated(0.57)	neutral(0.021)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TNC	3371	genome.wustl.edu	37	9	117848846	117848846	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002160.2	-1	validated	p.V388	0.000	91	0%	95	32.6%	1	100%	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2
CNTRL	11064	genome.wustl.edu	37	9	123860757	123860757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007018.4	+1	reviewed	p.F239L	1.000	189	0%	236	30.9%	2	0%	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	superfamily_L domain-like
NDUFA8	4702	genome.wustl.edu	37	9	124914576	124914576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014222.2	-1	reviewed	p.R55W	1.000	200	0%	192	32.3%	27	33.3%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_CHCH
RABGAP1	23637	genome.wustl.edu	37	9	125852094	125852094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012197.3	+1	validated	p.Q828*	1.000	191	0%	207	18.8%	3	0%	-	-	-	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127643480	127643482	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002077.3	-1	reviewed	p.E731in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_GRIP,HMMSmart_SM00755
ABL1	25	genome.wustl.edu	37	9	133755920	133755920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007313.2	+1	reviewed	p.R535H	0.995	37	0%	32	25%	13	38.4%	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	NULL
NUP214	8021	genome.wustl.edu	37	9	134027196	134027196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005085.2	+1	reviewed	p.E784G	0.998	111	0%	125	42.4%	3	33.3%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
SETX	23064	genome.wustl.edu	37	9	135139703	135139703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015046.5	-1	reviewed	p.T2653A	0.000	281	0%	278	14.7%	12	0%	benign(0)	tolerated(1)	-	NULL
SURF1	6834	genome.wustl.edu	37	9	136220672	136220672	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003172.2	-1	reviewed	p.G149	0.013	27	0%	33	36.4%	32	53.1%	-	-	-	HMMPfam_SURF1
SEC16A	9919	genome.wustl.edu	37	9	139358149	139358149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014866.1	-1	validated	p.F1497S	1.000	28	0%	35	28.6%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1984	84960	genome.wustl.edu	37	9	139699011	139699011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000479371	+1	known	p.P241Q	0.998	17	0%	12	83.3%	3	66.6%	unknown(0)	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140995611	140995611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000413253	+1	known	p.R124H	1.000	75	0%	29	31%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
AKR1C1	1645	genome.wustl.edu	37	10	5014844	5014844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001353.5	+1	reviewed	p.R250Q	0.059	111	0%	96	20.8%	3	0%	benign(0.005)	tolerated(0.13)	neutral(0.253)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
SEPHS1	22929	genome.wustl.edu	37	10	13386834	13386834	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012247.3	-1	reviewed	p.Q39	1.000	181	0%	205	41.5%	7	28.5%	-	-	-	NULL
ITGA8	8516	genome.wustl.edu	37	10	15688923	15688923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003638.1	-1	provisional	p.L377I	0.993	83	0%	97	37.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_Int_alpha,superfamily_SSF69318
ARMC3	219681	genome.wustl.edu	37	10	23287212	23287212	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173081.3	+1	validated	p.N437	0.043	70	0%	73	16.4%	2	0%	-	-	-	superfamily_ARM repeat
MYO3A	53904	genome.wustl.edu	37	10	26446417	26446417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017433.4	+1	reviewed	p.R991Q	1.000	186	0.5%	179	24%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
APBB1IP	54518	genome.wustl.edu	37	10	26825128	26825128	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_019043.3	+1	validated	p.V342	0.207	454	0%	390	39.5%	5	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SVIL	6840	genome.wustl.edu	37	10	29821909	29821910	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021738.2	-1	reviewed	p.G462fs	0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF25	219749	genome.wustl.edu	37	10	38241737	38241737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_145011.2	-1	provisional	p.F230S	0.003	337	0%	287	27.9%	0	-	benign(0.299)	deleterious(0)	deleterious(0.537)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF25	219749	genome.wustl.edu	37	10	38242018	38242018	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_145011.2	-1	provisional	p.H136	0.624	319	0%	282	21.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ASAH2C	653365	genome.wustl.edu	37	10	48007144	48007144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000426610	-1	known	p.K524E	1.000	326	0%	544	33.5%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	HMMPfam_Ceramidase_alk
GDF2	2658	genome.wustl.edu	37	10	48413849	48413849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016204.1	-1	reviewed	p.G340D	1.000	31	0%	17	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
GDF10	2662	genome.wustl.edu	37	10	48428670	48428670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004962.2	-1	reviewed	p.A406T	0.994	57	1.8%	56	32.1%	0	-	benign(0.021)	deleterious(0.03)	neutral(0.365)	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines
OGDHL	55753	genome.wustl.edu	37	10	50954894	50954894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018245.2	-1	validated	p.A400T	1.000	29	0%	29	41.4%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_E1_dh,superfamily_SSF52518
PHYHIPL	84457	genome.wustl.edu	37	10	60994087	60994087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032439.3	+1	validated	p.I44V	1.000	236	0%	281	37.7%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64958378	64958378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032776.1	-1	validated	p.E1796K	1.000	227	0%	291	22.7%	2	50%	benign(0.148)	tolerated(0.14)	neutral(0.263)	NULL
MYPN	84665	genome.wustl.edu	37	10	69966570	69966570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032578.2	+1	validated	p.P1235S	1.000	349	0%	398	43%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DDX21	9188	genome.wustl.edu	37	10	70719894	70719894	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004728.2	+1	reviewed	p.N140	1.000	152	0.7%	229	21%	3	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC20	55222	genome.wustl.edu	37	10	72061181	72061181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207119.1	-1	validated	p.V162M	0.998	19	0%	43	37.2%	0	-	benign(0.156)	tolerated(0.2)	neutral(0.063)	NULL
PRF1	5551	genome.wustl.edu	37	10	72358192	72358192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001083116.1	-1	reviewed	p.G429W	1.000	56	0%	43	48.8%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
C10orf27	219793	genome.wustl.edu	37	10	72541722	72541722	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152710.2	-1	validated	p.Q38*	0.546	63	0%	53	41.5%	0	-	-	-	-	NULL
UNC5B	219699	genome.wustl.edu	37	10	73039668	73039668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_170744.3	+1	validated	p.A57V	1.000	42	0%	38	39.5%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00409,superfamily_Immunoglobulin
CDH23	64072	genome.wustl.edu	37	10	73544069	73544069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022124.5	+1	reviewed	p.E1798D	0.842	89	0%	83	13.3%	0	-	probably_damaging(0.995)	tolerated(0.46)	deleterious(0.470)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
USP54	159195	genome.wustl.edu	37	10	75289572	75289572	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000424265	-1	known	p.A440T	0.389	135	0%	108	44.4%	0	-	-	-	-	NULL
ENSG00000242288	0	genome.wustl.edu	37	10	75488346	75488346	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000399449	-1	known	NULL	0.178	55	0%	54	46.3%	0	-	-	-	-	-
KIAA0913	23053	genome.wustl.edu	37	10	75559936	75559936	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000412198	+1	known	p.C881Y	0.998	52	0%	49	14.3%	9	0%	-	-	-	NULL
AP3M1	26985	genome.wustl.edu	37	10	75893792	75893792	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012095.4	-1	reviewed	p.D192E	1.000	65	0%	62	25.8%	2	50%	benign(0.022)	deleterious(0.01)	neutral(0.407)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
ZMIZ1	57178	genome.wustl.edu	37	10	81053452	81053452	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000372347	+1	known	p.T377	0.000	15	0%	22	27.3%	0	-	-	-	-	NULL
EIF5AL1	143244	genome.wustl.edu	37	10	81272591	81272591	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001099692.1	+1	validated	p.D62	1.000	115	0%	107	25.2%	54	0%	-	-	-	superfamily_Transl_SH3_like
LDB3	11155	genome.wustl.edu	37	10	88439174	88439174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007078.2	+1	reviewed	p.L48	0.010	66	0%	31	32.3%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PTEN	5728	genome.wustl.edu	37	10	89624274	89624275	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000371953	+1	known	p.Y16fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692965	89692966	+	Frame_Shift_Ins	INS	-	-	GGCCCTAG	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000371953	+1	known	p.D153fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
KIF20B	9585	genome.wustl.edu	37	10	91497200	91497200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016195.2	+1	validated	p.R828*	0.020	200	0%	216	38.9%	0	-	-	-	-	NULL
TNKS2	80351	genome.wustl.edu	37	10	93602108	93602108	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025235.3	+1	validated	p.R673	0.981	134	0%	96	38.5%	3	0%	-	-	-	superfamily_ANK
CYP26A1	1592	genome.wustl.edu	37	10	94834815	94834815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000783.3	+1	reviewed	p.G232R	1.000	12	0%	20	35%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95093068	95093068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013451.3	-1	reviewed	p.C1574Y	1.000	80	0%	57	45.6%	25	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ENTPD1	953	genome.wustl.edu	37	10	97583121	97583121	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098175.1	+1	validated	p.V44I	1.000	110	0%	112	19.6%	6	0%	-	-	-	NULL
TM9SF3	56889	genome.wustl.edu	37	10	98287856	98287856	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020123.3	-1	validated	p.L491	0.999	237	0%	349	23.8%	13	53.8%	-	-	-	HMMPfam_EMP70
C10orf28	27291	genome.wustl.edu	37	10	99968698	99968698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014472.4	+1	validated	p.V276A	0.004	221	0%	263	13.3%	0	-	benign(0.022)	tolerated(0.35)	neutral(0.022)	NULL
CWF19L1	55280	genome.wustl.edu	37	10	102016041	102016041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018294.4	-1	validated	p.V161A	1.000	354	0%	229	38.4%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
BTRC	8945	genome.wustl.edu	37	10	103294633	103294633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033637.2	+1	reviewed	p.Y438C	1.000	233	0%	305	36.4%	5	40%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CALHM2	51063	genome.wustl.edu	37	10	105209569	105209569	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015916.4	-1	validated	p.F44V	1.000	25	4%	24	41.7%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLK	9748	genome.wustl.edu	37	10	105762539	105762539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014720.2	+1	provisional	p.D535N	0.051	177	0%	161	40.4%	1	0%	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Protein kinase-like (PK-like)
DUSP5	1847	genome.wustl.edu	37	10	112269927	112269927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004419.3	+1	reviewed	p.V300L	0.915	77	0%	72	25%	7	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
TCF7L2	6934	genome.wustl.edu	37	10	114901060	114901060	+	Missense_Mutation	SNP	G	G	A	rs190966900	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030756.4	+1	reviewed	p.V201I	1.000	194	0%	191	41.4%	1	0%	benign(0.176)	tolerated(0.56)	neutral(0.022)	HMMPfam_CTNNB1_binding
TRUB1	142940	genome.wustl.edu	37	10	116734979	116734979	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_139169.4	+1	validated	p.I297	0.999	321	0%	584	14.7%	0	-	-	-	-	superfamily_PsdUridine_synth_cat_dom
ATRNL1	26033	genome.wustl.edu	37	10	117221514	117221514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207303.2	+1	validated	p.T1129I	1.000	95	0%	186	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
INPP5F	22876	genome.wustl.edu	37	10	121565908	121565908	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014937.2	+1	reviewed	p.G452	0.871	44	0%	42	45.2%	0	-	-	-	-	NULL
FGFR2	2263	genome.wustl.edu	37	10	123274773	123274773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022970.3	-1	reviewed	p.C383Y	1.000	119	0%	128	25.8%	10	40%	benign(0.177)	deleterious(0)	neutral(0.461)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127414334	127414334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015608.2	+1	validated	p.S240L	0.018	70	0%	79	46.8%	1	0%	benign(0.055)	tolerated(0.27)	neutral(0.037)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129237360	129237360	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000398025	+1	known	p.D1755	0.012	16	0%	22	45.5%	11	27.2%	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129906338	129906338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002417.4	-1	reviewed	p.S1256P	0.000	398	0.8%	352	42%	1	0%	benign(0)	tolerated(0.93)	-	HMMPfam_K167R
KNDC1	85442	genome.wustl.edu	37	10	135026384	135026384	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152643.6	+1	validated	p.Y1467	1.000	15	0%	14	28.6%	0	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
TUBGCP2	10844	genome.wustl.edu	37	10	135103421	135103421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006659.2	-1	validated	p.Y423H	1.000	25	0%	26	15.4%	12	0%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	HMMPfam_Spc97_Spc98
RRM1	6240	genome.wustl.edu	37	11	4142938	4142938	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001033.3	+1	reviewed	p.D327	0.999	174	0%	201	37.3%	9	77.7%	-	-	-	HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998
OR51L1	119682	genome.wustl.edu	37	11	5020893	5020893	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001004755.1	+1	provisional	p.V227	0.692	186	0%	182	40.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SMPD1	6609	genome.wustl.edu	37	11	6414606	6414606	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000543.3	+1	reviewed	p.R418*	0.990	32	0%	34	47.1%	14	7.1%	-	-	-	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
DENND5A	23258	genome.wustl.edu	37	11	9225402	9225402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015213.2	-1	validated	p.P252S	1.000	91	0%	87	14.9%	2	0%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_DENN,HMMSmart_SM00799
ABCC8	6833	genome.wustl.edu	37	11	17428439	17428439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000352.3	-1	reviewed	p.S1053I	0.463	88	0%	53	30.2%	0	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
TSG101	7251	genome.wustl.edu	37	11	18505510	18505510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006292.2	-1	reviewed	p.Q250H	1.000	499	0%	657	40.3%	41	29.2%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMSmart_SM00212
IGSF22	283284	genome.wustl.edu	37	11	18732263	18732263	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173588.3	-1	validated	p.I736	0.932	113	0%	77	10.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
E2F8	79733	genome.wustl.edu	37	11	19251184	19251184	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024680.2	-1	validated	p.T570	0.002	139	0%	109	16.5%	0	-	-	-	-	NULL
SLC5A12	159963	genome.wustl.edu	37	11	26705327	26705327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178498.3	-1	validated	p.V429M	0.000	20	0%	27	44.4%	0	-	benign(0.01)	-	-	NULL
LIN7C	55327	genome.wustl.edu	37	11	27521015	27521015	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018362.3	-1	validated	p.G110A	1.000	156	0%	208	16.3%	1	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
LIN7C	55327	genome.wustl.edu	37	11	27521091	27521091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018362.3	-1	validated	p.S85R	1.000	181	0%	199	15.6%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	superfamily_PDZ domain-like
QSER1	79832	genome.wustl.edu	37	11	32994999	32994999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001076786.1	+1	provisional	p.K1625N	1.000	73	0%	107	36.4%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
ACCS	84680	genome.wustl.edu	37	11	44100311	44100311	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001127219.1	+1	validated	p.Q270	0.538	103	0%	59	47.5%	3	66.6%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
PEX16	9409	genome.wustl.edu	37	11	45935882	45935882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_057174.2	-1	reviewed	p.R227W	1.000	16	0%	19	52.6%	38	39.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pex16
CHRM4	1132	genome.wustl.edu	37	11	46406731	46406731	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000741.2	-1	reviewed	p.T459	0.999	6	0.000	10	0.800	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
HARBI1	283254	genome.wustl.edu	37	11	46637143	46637143	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173811.3	-1	validated	p.G215	0.645	200	0%	159	22.6%	6	33.3%	-	-	-	NULL
LRP4	4038	genome.wustl.edu	37	11	46917556	46917556	+	Silent	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002334.3	-1	reviewed	p.G354	0.993	53	0%	38	10.5%	2	0%	-	-	-	superfamily_LDL receptor-like module
LOC120824	120824	genome.wustl.edu	37	11	49003214	49003214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_062300.6	-1	model	p.E12K	0.999	243	0%	274	33.2%	0	-	-	-	-	superfamily_RING/U-box
OR4P4	81300	genome.wustl.edu	37	11	55405980	55405980	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001004124.1	+1	provisional	p.C49	0.000	485	0.2%	688	39.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10W1	81341	genome.wustl.edu	37	11	58035011	58035011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207374.3	-1	validated	p.A107V	0.705	130	0%	185	46.5%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
FAM111B	374393	genome.wustl.edu	37	11	58892671	58892671	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198947.3	+1	validated	p.R367	0.000	400	0.3%	421	23.8%	0	-	-	-	-	NULL
EEF1G	1937	genome.wustl.edu	37	11	62340139	62340139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001404.4	-1	reviewed	p.R30C	1.000	104	0%	67	37.3%	451	41%	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_GST_N,superfamily_Thioredoxin-like
CATSPER1	117144	genome.wustl.edu	37	11	65793187	65793187	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_053054.3	-1	reviewed	p.Q222*	0.000	27	0%	20	40%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
B3GNT1	11041	genome.wustl.edu	37	11	66113662	66113662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006876.2	-1	reviewed	p.G369D	1.000	71	0%	86	14%	16	12.5%	possibly_damaging(0.904)	deleterious(0.01)	deleterious(0.764)	NULL
CCND1	595	genome.wustl.edu	37	11	69462905	69462905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_053056.2	+1	reviewed	p.D240N	1.000	13	0%	16	37.5%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
LOC100131539	100131539	genome.wustl.edu	37	11	71527939	71527939	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_001723234.2	-1	model	p.C174	0.005	401	0%	460	38.3%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
P2RY6	5031	genome.wustl.edu	37	11	73007797	73007797	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004154.3	+1	reviewed	p.S78	1.000	101	0%	100	33%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DNAJB13	374407	genome.wustl.edu	37	11	73676079	73676079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153614.2	+1	provisional	p.R164M	1.000	112	0%	98	39.8%	5	60%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	superfamily_HSP40/DnaJ peptide-binding domain
XRRA1	143570	genome.wustl.edu	37	11	74559458	74559458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182969.1	-1	validated	p.H469R	0.000	16	0%	29	17.2%	0	-	probably_damaging(0.959)	tolerated(0.1)	deleterious(0.689)	NULL
OR2AT4	341152	genome.wustl.edu	37	11	74800475	74800475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001005285.1	-1	provisional	p.R95H	0.102	127	0%	152	36.2%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ODZ4	26011	genome.wustl.edu	37	11	78369608	78369608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098816.2	-1	validated	p.H2602R	1.000	41	0%	43	14%	0	-	benign(0.017)	tolerated(0.34)	neutral(0.024)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78380999	78380999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098816.2	-1	validated	p.N2131D	1.000	37	0%	45	33.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ME3	10873	genome.wustl.edu	37	11	86157429	86157429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001014811.1	-1	reviewed	p.P494L	1.000	72	0%	90	40%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
FAT3	120114	genome.wustl.edu	37	11	92577265	92577265	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001008781.2	+1	validated	p.Q3578*	1.000	213	0%	176	32.4%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC82	79780	genome.wustl.edu	37	11	96092310	96092310	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024725.3	-1	validated	p.R471	0.919	202	0%	205	23.4%	3	66.6%	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103126238	103126238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001080463.1	+1	reviewed	p.A3441V	1.000	15	0%	27	51.9%	1	0%	possibly_damaging(0.813)	deleterious(0.04)	deleterious(0.656)	NULL
NPAT	4863	genome.wustl.edu	37	11	108031838	108031838	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002519.2	-1	validated	p.E1325	0.994	97	0%	142	14.1%	2	0%	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108119672	108119672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000051.3	+1	reviewed	p.D360Y	1.000	110	0%	90	23.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
EXPH5	23086	genome.wustl.edu	37	11	108384505	108384505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015065.2	-1	validated	p.F577L	0.656	160	0%	222	12.6%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
CADM1	23705	genome.wustl.edu	37	11	115099935	115099935	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014333.3	-1	validated	p.L207	1.000	143	0%	152	11.2%	31	3.2%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SORL1	6653	genome.wustl.edu	37	11	121391560	121391560	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003105.4	+1	reviewed	e9+2	1.000	110	0%	116	21.6%	0	-	-	-	-	-
OR8G5	219865	genome.wustl.edu	37	11	124135588	124135588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001005198.1	+1	provisional	p.S289F	0.257	202	0%	333	39.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ST14	6768	genome.wustl.edu	37	11	130058825	130058825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021978.3	+1	reviewed	p.T144M	0.791	8	0.000	9	0.556	39	41%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_SEA,superfamily_SSF82671
CCDC77	84318	genome.wustl.edu	37	12	551007	551007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032358.3	+1	validated	p.R463Q	0.551	328	0%	281	40.9%	3	66.6%	benign(0.155)	tolerated(0.06)	neutral(0.336)	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1995486	1995486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172364.4	-1	reviewed	p.S299I	1.000	68	0%	80	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA1C	775	genome.wustl.edu	37	12	2760845	2760845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_199460.2	+1	reviewed	p.R1377C	1.000	55	0%	55	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PARP11	57097	genome.wustl.edu	37	12	3931303	3931303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020367.4	-1	validated	p.A122V	0.998	133	0%	115	27.8%	1	100%	benign(0.273)	tolerated(0.22)	neutral(0.071)	NULL
AKAP3	10566	genome.wustl.edu	37	12	4736021	4736021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006422.2	-1	reviewed	p.I683L	1.000	158	0%	152	21.7%	0	-	possibly_damaging(0.754)	deleterious(0)	deleterious(0.723)	HMMPfam_AKAP_110,HMMSmart_SM00807
CD27	939	genome.wustl.edu	37	12	6559464	6559464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001242.4	+1	reviewed	p.S132P	0.001	109	0%	72	13.9%	24	0%	benign(0)	tolerated(1)	-	NULL
C12orf53	196500	genome.wustl.edu	37	12	6804738	6804738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153685.2	-1	predicted	p.T229A	1.000	82	0%	74	21.6%	0	-	unknown(0)	deleterious(0)	-	NULL
PHB2	11331	genome.wustl.edu	37	12	7079403	7079403	+	Silent	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001144831.1	-1	validated	p.G56	0.597	90	0%	71	22.5%	57	22.8%	-	-	-	HMMPfam_Band_7,HMMSmart_SM00244
C1R	715	genome.wustl.edu	37	12	7187873	7187873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000290575	-1	known	p.V708G	1.000	147	0%	114	14.9%	57	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
DPPA3	359787	genome.wustl.edu	37	12	7869588	7869588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_199286.2	+1	reviewed	p.P132H	0.000	294	0%	249	24.5%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
M6PR	4074	genome.wustl.edu	37	12	9098823	9098823	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002355.2	-1	reviewed	e1+2	0.988	492	0%	412	11.4%	0	-	-	-	-	-
CLEC9A	283420	genome.wustl.edu	37	12	10213789	10213789	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207345.2	+1	provisional	p.L79Q	0.002	148	0%	167	11.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LRP6	4040	genome.wustl.edu	37	12	12315195	12315195	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002336.2	-1	reviewed	p.Q737H	1.000	215	0%	230	29.1%	0	-	possibly_damaging(0.753)	deleterious(0.04)	deleterious(0.625)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
GRIN2B	2904	genome.wustl.edu	37	12	13717264	13717264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000834.3	-1	reviewed	p.F970L	0.996	83	0%	83	26.5%	0	-	probably_damaging(0.971)	tolerated(1)	neutral(0.413)	HMMPfam_NMDAR2_C
LST-3TM12	338821	genome.wustl.edu	37	12	21201731	21201731	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001009562.4	+1	validated	p.L360	0.915	63	0%	119	20.2%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
BHLHE41	79365	genome.wustl.edu	37	12	26276649	26276649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030762.2	-1	reviewed	p.V87A	1.000	103	0%	141	18.4%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
ITPR2	3709	genome.wustl.edu	37	12	26752151	26752151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002223.2	-1	validated	p.L1310P	1.000	768	0.1%	1069	20.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RYDR_ITPR
TM7SF3	51768	genome.wustl.edu	37	12	27127036	27127037	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016551.2	-1	validated	p.E525fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27840393	27840393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003622.2	+1	reviewed	p.I775F	0.996	128	0%	181	26%	5	40%	benign(0.229)	tolerated(0.12)	neutral(0.284)	HMMSmart_SAM,superfamily_SAM_homology
TSPAN11	441631	genome.wustl.edu	37	12	31116879	31116879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001080509.2	+1	validated	p.G68D	0.996	112	0%	79	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tetraspannin
CNTN1	1272	genome.wustl.edu	37	12	41330670	41330670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001843.2	+1	reviewed	p.P358L	1.000	202	0%	266	34.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GXYLT1	283464	genome.wustl.edu	37	12	42499855	42499855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173601.1	-1	validated	p.V210A	1.000	115	0%	147	36.1%	1	0%	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
ARID2	196528	genome.wustl.edu	37	12	46246488	46246488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152641.2	+1	validated	p.A1528T	0.998	181	0%	248	12.1%	1	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
DDX23	9416	genome.wustl.edu	37	12	49225086	49225086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004818.2	-1	reviewed	p.T693I	1.000	178	0%	149	44.3%	24	16.6%	possibly_damaging(0.592)	tolerated(0.06)	deleterious(0.527)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC65	85478	genome.wustl.edu	37	12	49312535	49312535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033124.4	+1	validated	p.Y292C	0.306	130	0%	117	21.4%	0	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
MLL2	8085	genome.wustl.edu	37	12	49415570	49415570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003482.3	-1	validated	p.M5536T	1.000	67	0%	52	44.2%	10	20%	unknown(0)	-	-	HMMSmart_SM00508,superfamily_SET domain
MLL2	8085	genome.wustl.edu	37	12	49434568	49434568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003482.3	-1	validated	p.A2329T	1.000	34	0%	23	30.4%	1	0%	unknown(0)	-	-	NULL
KRT1	3848	genome.wustl.edu	37	12	53070091	53070091	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006121.3	-1	reviewed	p.T481	1.000	103	0%	91	35.2%	0	-	-	-	-	HMMPfam_Filament,PatternScan_IF
ESPL1	9700	genome.wustl.edu	37	12	53673593	53673593	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012291.4	+1	validated	p.G814	0.803	88	1.1%	85	32.9%	1	100%	-	-	-	NULL
AAAS	8086	genome.wustl.edu	37	12	53702086	53702086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015665.5	-1	reviewed	p.R410H	1.000	200	0%	95	36.8%	32	37.5%	probably_damaging(0.978)	tolerated(0.52)	neutral(0.429)	superfamily_WD40_like
PMEL	6490	genome.wustl.edu	37	12	56355492	56355492	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006928.3	-1	validated	p.G34A	0.940	212	0%	178	15.7%	0	-	benign(0.013)	tolerated(0.15)	neutral(0.241)	NULL
PTGES3	10728	genome.wustl.edu	37	12	57066836	57066836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006601.5	-1	validated	p.A6T	1.000	56	0%	56	44.6%	35	34.2%	probably_damaging(1)	tolerated(0.6)	deleterious(0.504)	superfamily_HSP20-like chaperones,HMMPfam_CS
LRP1	4035	genome.wustl.edu	37	12	57584719	57584719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002332.2	+1	reviewed	p.A2388V	0.997	51	0%	50	32%	2	0%	benign(0.235)	deleterious(0.04)	neutral(0.372)	HMMSmart_SM00135,superfamily_YWTD domain
OS9	10956	genome.wustl.edu	37	12	58090074	58090074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006812.3	+1	reviewed	p.R166H	0.999	142	0%	134	11.9%	47	0%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_PRKCSH
CDK4	1019	genome.wustl.edu	37	12	58144513	58144513	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000075.2	-1	reviewed	p.L186	1.000	176	0%	187	11.2%	48	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRIG3	121227	genome.wustl.edu	37	12	59276805	59276805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153377.3	-1	provisional	p.N442K	1.000	177	0%	214	23.4%	0	-	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	superfamily_RNI-like
MON2	23041	genome.wustl.edu	37	12	62972275	62972275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015026.2	+1	validated	p.I1522T	1.000	40	0%	45	33.3%	1	100%	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_ARM-type_fold
CAND1	55832	genome.wustl.edu	37	12	67691359	67691359	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018448.3	+1	validated	p.L222	1.000	339	0%	531	11.3%	5	0%	-	-	-	superfamily_ARM repeat
MDM2	4193	genome.wustl.edu	37	12	69229689	69229689	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002392.3	+1	reviewed	p.F255	1.000	189	0%	239	14.6%	5	60%	-	-	-	superfamily_SWIB/MDM2 domain
CPSF6	11052	genome.wustl.edu	37	12	69652517	69652517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007007.2	+1	validated	p.G281E	1.000	222	0%	239	25.9%	30	40%	unknown(0)	deleterious(0.04)	-	NULL
BEST3	144453	genome.wustl.edu	37	12	70049012	70049012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032735.2	-1	validated	p.G561V	0.000	218	0%	243	16.9%	0	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72050792	72050792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144982.4	-1	validated	p.F296L	1.000	369	0%	394	22.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NAV3	89795	genome.wustl.edu	37	12	78571020	78571020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014903.4	+1	validated	p.A1742T	0.997	282	0%	400	23.5%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85623377	85623377	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001079910.1	+1	validated	p.L1635	1.000	210	0%	200	24.5%	1	0%	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88490678	88490678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025114.3	-1	reviewed	p.Q1030H	0.974	38	0%	35	45.7%	0	-	benign(0.118)	tolerated(0.09)	neutral(0.306)	NULL
GALNT4	8693	genome.wustl.edu	37	12	89918056	89918056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003774.3	-1	reviewed	p.K91E	1.000	65	0%	82	28%	6	16.6%	possibly_damaging(0.611)	tolerated(0.25)	neutral(0.248)	NULL
ATP2B1	490	genome.wustl.edu	37	12	89997545	89997547	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001682.2	-1	reviewed	p.K930in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
PLXNC1	10154	genome.wustl.edu	37	12	94618027	94618027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005761.1	+1	provisional	p.F576L	0.754	249	0%	348	38.2%	1	0%	benign(0.01)	tolerated(1)	neutral(0.001)	NULL
CDK17	5128	genome.wustl.edu	37	12	96728538	96728538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002595.3	-1	reviewed	p.A26V	1.000	123	0%	199	36.2%	0	-	probably_damaging(0.991)	tolerated(0.34)	neutral(0.467)	NULL
SPIC	121599	genome.wustl.edu	37	12	101880295	101880295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152323.1	+1	provisional	p.T165A	1.000	366	0%	269	14.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785
STAB2	55576	genome.wustl.edu	37	12	104056696	104056696	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017564.9	+1	reviewed	p.L648	0.868	344	0%	352	10.8%	0	-	-	-	-	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
SLC41A2	84102	genome.wustl.edu	37	12	105260246	105260246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032148.3	-1	validated	p.G380D	1.000	152	0%	172	41.9%	1	100%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106715304	106715304	+	Missense_Mutation	SNP	G	G	A	rs138884019	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152772.1	+1	provisional	p.R152H	0.985	59	0%	49	51%	1	0%	benign(0.104)	tolerated(0.08)	neutral(0.308)	HMMPfam_Tcp11
WSCD2	9671	genome.wustl.edu	37	12	108634265	108634265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014653.2	+1	validated	p.N430T	1.000	102	0%	74	32.4%	0	-	possibly_damaging(0.434)	deleterious(0)	deleterious(0.586)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC63	160762	genome.wustl.edu	37	12	111296555	111296555	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152591.1	+1	provisional	p.V115	0.000	98	0%	91	42.9%	0	-	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116422117	116422117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015335.3	-1	validated	p.V1467M	0.998	77	0%	98	40.8%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_TRAP_240kDa
FBXW8	26259	genome.wustl.edu	37	12	117426488	117426488	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153348.2	+1	reviewed	p.V351	1.000	300	0%	416	27.4%	1	0%	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
FBXO21	23014	genome.wustl.edu	37	12	117612025	117612025	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033624.2	-1	reviewed	p.N287	1.000	183	0%	261	34.9%	1	0%	-	-	-	superfamily_F-box domain
NOS1	4842	genome.wustl.edu	37	12	117703278	117703278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000620.2	-1	reviewed	p.T660I	1.000	21	0%	21	52.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
CABP1	9478	genome.wustl.edu	37	12	121094049	121094049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031205.2	+1	reviewed	p.K67E	1.000	16	0%	11	36.4%	0	-	benign(0.206)	tolerated(0.08)	neutral(0.320)	NULL
WDR66	144406	genome.wustl.edu	37	12	122359339	122359339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144668.4	+1	validated	p.D43G	0.000	339	0.3%	339	22.1%	1	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122395069	122395069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144668.4	+1	validated	p.G542D	0.266	253	0%	210	36.7%	1	0%	benign(0.175)	tolerated(0.16)	neutral(0.075)	superfamily_WD40 repeat-like
LRRC43	254050	genome.wustl.edu	37	12	122676048	122676048	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098519.1	+1	validated	p.Y341	0.981	99	0%	94	42.6%	1	100%	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123089509	123089509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014708.4	+1	reviewed	p.A1754V	0.988	30	0%	51	19.6%	8	62.5%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_Rod_C
MPHOSPH9	10198	genome.wustl.edu	37	12	123702944	123702944	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022782.2	-1	validated	p.S173	0.000	168	0%	158	31.6%	0	-	-	-	-	NULL
ATP6V0A2	23545	genome.wustl.edu	37	12	124228355	124228355	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012463.3	+1	reviewed	p.P354	0.986	200	0%	168	33.3%	0	-	-	-	-	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124288284	124288284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207437.3	+1	validated	p.N779K	0.790	180	0%	165	43%	0	-	benign(0.044)	tolerated(0.13)	neutral(0.255)	NULL
EP400	57634	genome.wustl.edu	37	12	132547064	132547064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015409.3	+1	validated	p.L2717F	0.953	48	0%	50	18%	4	0%	probably_damaging(0.999)	-	-	NULL
ZNF140	7699	genome.wustl.edu	37	12	133682795	133682795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003440.2	+1	validated	p.R311H	0.263	257	0%	296	32.4%	20	25%	benign(0.081)	tolerated(0.1)	neutral(0.292)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF268	10795	genome.wustl.edu	37	12	133779178	133779178	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003415.2	+1	validated	p.K302	0.247	52	0%	60	30%	2	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PSPC1	55269	genome.wustl.edu	37	13	20325428	20325428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001042414.1	-1	validated	p.L317S	1.000	509	0%	400	39%	8	37.5%	possibly_damaging(0.808)	deleterious(0.05)	deleterious(0.649)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20610960	20610963	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AAGA	AAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003453.2	+1	validated	p.K735fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-FCS,HMMSmart_TRASH
SKA3	221150	genome.wustl.edu	37	13	21734051	21734051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000314759	-1	known	p.S302N	0.001	129	0%	229	42.4%	3	100%	benign(0.073)	tolerated(0.31)	neutral(0.032)	NULL
SACS	26278	genome.wustl.edu	37	13	23906196	23906196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014363.4	-1	reviewed	p.V3940A	1.000	172	0%	139	23%	0	-	possibly_damaging(0.794)	tolerated(0.51)	neutral(0.307)	NULL
PABPC3	5042	genome.wustl.edu	37	13	25671897	25671897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030979.2	+1	validated	p.A521T	0.420	119	0%	135	37%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_PABC (PABP) domain
POLR1D	51082	genome.wustl.edu	37	13	28197186	28197186	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015972.2	+1	provisional	p.F67L	1.000	90	0%	99	31.3%	29	27.5%	possibly_damaging(0.851)	deleterious(0.01)	deleterious(0.733)	PatternScan_RNA_POL_L_13KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L
FRY	10129	genome.wustl.edu	37	13	32723952	32723952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_023037.2	+1	validated	p.A487V	1.000	63	0%	84	28.6%	0	-	benign(0.253)	tolerated(0.79)	neutral(0.027)	NULL
STARD13	90627	genome.wustl.edu	37	13	33700335	33700335	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178006.3	-1	validated	p.Y655	1.000	188	0%	175	41.1%	0	-	-	-	-	NULL
DCLK1	9201	genome.wustl.edu	37	13	36700142	36700142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004734.3	-1	validated	p.R45C	1.000	51	0%	70	52.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF89837
CCDC70	83446	genome.wustl.edu	37	13	52439566	52439566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031290.2	+1	validated	p.S18G	0.943	171	0%	178	10.7%	0	-	possibly_damaging(0.552)	tolerated(0.09)	deleterious(0.484)	NULL
THSD1	55901	genome.wustl.edu	37	13	52952763	52952763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018676.3	-1	reviewed	p.P448S	0.206	86	0%	97	13.4%	2	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60616935	60616935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001042517.1	-1	validated	p.R172Q	0.997	107	0%	140	35%	0	-	possibly_damaging(0.938)	tolerated(0.13)	deleterious(0.636)	HMMPfam_Drf_GBD
DIS3	22894	genome.wustl.edu	37	13	73340127	73340127	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014953.3	-1	validated	p.L651	0.951	51	0%	75	28%	2	0%	-	-	-	HMMPfam_RNB
DIS3	22894	genome.wustl.edu	37	13	73346414	73346414	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014953.3	-1	validated	e10-1	1.000	58	0%	90	44.4%	0	-	-	-	-	-
RNF113B	140432	genome.wustl.edu	37	13	98829137	98829137	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178861.4	-1	validated	p.T118	0.995	34	2.9%	34	41.2%	0	-	-	-	-	NULL
DOCK9	23348	genome.wustl.edu	37	13	99449440	99449440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000357329	-1	known	p.E2044K	1.000	36	0%	32	34.4%	3	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ded_cyto
ERCC5	2073	genome.wustl.edu	37	13	103514654	103514654	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000123.2	+1	reviewed	p.P385	0.000	151	0%	138	20.3%	3	33.3%	-	-	-	superfamily_PIN domain-like
COL4A2	1284	genome.wustl.edu	37	13	111147746	111147746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001846.2	+1	reviewed	p.P1231Q	0.028	38	0%	53	41.5%	83	10.8%	possibly_damaging(0.9)	tolerated(0.59)	neutral(0.361)	NULL
OR4K14	122740	genome.wustl.edu	37	14	20483225	20483225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001004712.1	-1	provisional	p.L43P	0.020	103	1%	113	12.4%	0	-	benign(0.241)	deleterious(0.01)	neutral(0.430)	HMMPfam_7tm_1,superfamily_SSF81321
TEP1	7011	genome.wustl.edu	37	14	20849099	20849100	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007110.4	-1	reviewed	p.A1585fs	0.741:0.685	-	-	-	-	-	-	-	-	-	NULL
RNASE12	493901	genome.wustl.edu	37	14	21058681	21058681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001024822.2	-1	validated	p.F68V	1.000	115	0%	81	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RnaseA,superfamily_RNaseA
RNASE8	122665	genome.wustl.edu	37	14	21526309	21526309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138331.1	+1	provisional	p.N86K	0.000	325	0%	341	41.3%	0	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
SALL2	6297	genome.wustl.edu	37	14	21991004	21991004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005407.1	-1	validated	p.A953V	1.000	95	0%	62	43.5%	6	50%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C14orf93	60686	genome.wustl.edu	37	14	23456736	23456736	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001130706.1	-1	validated	p.N435	0.768	76	0%	66	18.2%	10	50%	-	-	-	NULL
C14orf93	60686	genome.wustl.edu	37	14	23465180	23465180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001130706.1	-1	validated	p.R299C	1.000	151	0%	121	38%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYH7	4625	genome.wustl.edu	37	14	23884902	23884902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000257.2	-1	reviewed	p.S1698F	0.982	65	0%	54	27.8%	0	-	benign(0.061)	deleterious(0)	neutral(0.449)	HMMPfam_Myosin_tail_1
DHRS2	10202	genome.wustl.edu	37	14	24108387	24108387	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182908.4	+1	validated	e2-1	1.000	73	0%	63	22.2%	0	-	-	-	-	-
LRRC16B	90668	genome.wustl.edu	37	14	24527945	24527945	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138360.3	+1	validated	p.V483	0.995	19	0%	19	42.1%	0	-	-	-	-	superfamily_RNI-like
TINF2	26277	genome.wustl.edu	37	14	24709015	24709015	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001099274.1	-1	reviewed	p.S448	0.006	171	0%	140	11.4%	9	0%	-	-	-	NULL
AP4S1	11154	genome.wustl.edu	37	14	31539050	31539050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007077.3	+1	validated	p.C47Y	1.000	318	0%	215	35.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clat_adaptor_s,superfamily_Longin_like
LOC100289251	100289251	genome.wustl.edu	37	14	35871729	35871729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002343271.1	+1	model	p.G66D	1.000	77	0%	85	41.2%	30	30%	-	-	-	NULL
FANCM	57697	genome.wustl.edu	37	14	45669090	45669090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020937.2	+1	reviewed	p.S2009Y	0.992	268	0%	265	21.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_RuvA domain 2-like
MDGA2	161357	genome.wustl.edu	37	14	47530515	47530515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001113498.1	-1	validated	p.A419T	1.000	195	0%	250	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
ABHD12B	145447	genome.wustl.edu	37	14	51352569	51352569	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_181814.1	+1	validated	p.S129	0.999	154	0%	193	26.9%	0	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
RTN1	6252	genome.wustl.edu	37	14	60212574	60212574	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021136.2	-1	reviewed	p.E289	0.001	233	0%	375	11.7%	0	-	-	-	-	NULL
MTHFD1	4522	genome.wustl.edu	37	14	64882459	64882459	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005956.3	+1	reviewed	e6+2	1.000	102	0%	102	43.1%	0	-	-	-	-	-
ENSG00000249603	0	genome.wustl.edu	37	14	65067340	65067340	+	RNA	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000509438	+1	novel	NULL	0.853	64	0%	61	37.7%	0	-	-	-	-	-
MAX	4149	genome.wustl.edu	37	14	65560514	65560514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002382.3	-1	reviewed	p.H28R	1.000	73	0%	95	36.8%	12	41.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
SLC39A9	55334	genome.wustl.edu	37	14	69925109	69925109	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018375.3	+1	validated	p.N241	1.000	164	0%	206	27.2%	2	0%	-	-	-	HMMPfam_Zip
RGS6	9628	genome.wustl.edu	37	14	72985245	72985245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004296.4	+1	validated	p.Q426H	1.000	99	0%	94	38.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
YLPM1	56252	genome.wustl.edu	37	14	75266144	75266144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_019589.2	+1	validated	p.T1382A	0.988	840	0%	878	11.4%	3	0%	benign(0.182)	deleterious(0.03)	neutral(0.381)	NULL
EIF2B2	8892	genome.wustl.edu	37	14	75475757	75475757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014239.3	+1	reviewed	p.V308M	1.000	333	0%	290	39.3%	16	25%	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like
JDP2	122953	genome.wustl.edu	37	14	75936126	75936126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001135049.1	+1	validated	p.K158M	1.000	24	0%	44	25%	9	11.1%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
TTLL5	23093	genome.wustl.edu	37	14	76249820	76249820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015072.4	+1	reviewed	p.S978T	1.000	384	0%	455	38.5%	5	20%	probably_damaging(0.953)	tolerated(0.22)	neutral(0.439)	NULL
AHSA1	10598	genome.wustl.edu	37	14	77925963	77925964	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012111.2	+1	validated	p.D31fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1
FOXN3	1112	genome.wustl.edu	37	14	89878748	89878748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001085471.1	-1	reviewed	p.C25R	1.000	133	0%	75	38.7%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
GPR68	8111	genome.wustl.edu	37	14	91701155	91701155	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003485.3	-1	validated	p.Y90	1.000	8	0.000	15	0.333	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GOLGA5	9950	genome.wustl.edu	37	14	93264086	93264086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005113.2	+1	reviewed	p.S102P	0.122	186	0%	168	25%	7	28.5%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
SERPINA2	390502	genome.wustl.edu	37	14	94833010	94833010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000238576	-1	known	p.V9A	0.195	10	0%	11	45.5%	0	-	-	-	-	superfamily_Serpins
CLMN	79789	genome.wustl.edu	37	14	95679705	95679705	+	Silent	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024734.3	-1	validated	p.S153	0.074	78	0%	68	27.9%	1	100%	-	-	-	superfamily_Calponin-homology domain CH-domain
ATG2B	55102	genome.wustl.edu	37	14	96775883	96775883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018036.5	-1	validated	p.A1404T	1.000	155	0.6%	188	39.9%	1	0%	benign(0.001)	tolerated(0.71)	neutral(0.002)	NULL
TRAF3	7187	genome.wustl.edu	37	14	103369606	103369606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003300.2	+1	reviewed	p.S325	1.000	32	0%	30	33.3%	2	50%	-	-	-	NULL
TDRD9	122402	genome.wustl.edu	37	14	104515953	104515953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153046.2	+1	validated	p.C1328S	0.978	14	0%	16	37.5%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105418215	105418215	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138420.2	-1	validated	p.P1191	0.005	65	0%	57	19.3%	0	-	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28419655	28419655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004667.4	-1	reviewed	p.A3315T	1.000	71	0%	101	24.8%	1	0%	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
TJP1	7082	genome.wustl.edu	37	15	30053906	30053906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003257.3	-1	validated	p.G254C	1.000	149	0%	141	35.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ENSG00000103832	0	genome.wustl.edu	37	15	31092307	31092307	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000220188	+1	known	p.G230	0.707	65	1.5%	58	17.2%	0	-	-	-	-	NULL
GOLGA8A	23015	genome.wustl.edu	37	15	34673802	34673802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_181077.3	-1	reviewed	p.A541V	0.667	106	0%	67	40.3%	6	33.3%	benign(0)	tolerated(1)	-	NULL
VPS39	23339	genome.wustl.edu	37	15	42470677	42470677	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015289.2	-1	reviewed	p.L270	1.000	254	0%	237	17.3%	2	0%	-	-	-	HMMPfam_CNH
TTBK2	146057	genome.wustl.edu	37	15	43045381	43045381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173500.3	-1	reviewed	p.Q688L	0.839	206	0%	182	42.3%	0	-	benign(0.032)	deleterious(0.02)	neutral(0.385)	NULL
TMEM62	80021	genome.wustl.edu	37	15	43438708	43438708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024956.3	+1	provisional	p.R165H	0.854	311	0%	446	42.2%	4	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	superfamily_SSF56300
ZSCAN29	146050	genome.wustl.edu	37	15	43653873	43653873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152455.3	-1	validated	p.Y653H	0.444	262	0%	238	29%	1	0%	benign(0.004)	tolerated(0.2)	neutral(0.049)	NULL
SLC24A5	283652	genome.wustl.edu	37	15	48431165	48431165	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_205850.2	+1	reviewed	e7-1	1.000	179	0%	231	40.7%	0	-	-	-	-	-
FBN1	2200	genome.wustl.edu	37	15	48744828	48744828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000138.4	-1	reviewed	p.N1826D	1.000	90	0%	80	27.5%	3	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48788407	48788407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000138.4	-1	reviewed	p.V770A	0.967	154	0%	176	16.5%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CEP152	22995	genome.wustl.edu	37	15	49088330	49088330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014985.2	-1	provisional	p.Y190H	0.926	264	0%	289	12.5%	1	0%	probably_damaging(0.99)	tolerated(0.37)	neutral(0.461)	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49320772	49320772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014701.2	-1	provisional	p.S258P	1.000	182	0%	243	21.8%	1	100%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49325229	49325229	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014701.2	-1	provisional	p.E199	1.000	203	0%	279	27.6%	2	0%	-	-	-	NULL
CYP19A1	1588	genome.wustl.edu	37	15	51503006	51503006	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000103.3	-1	reviewed	p.*504W	0.982	385	0%	626	24.9%	0	-	-	-	-	NULL
CYP19A1	1588	genome.wustl.edu	37	15	51535148	51535148	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_031226.2	-1	reviewed	e1-1	0.986	286	0%	307	43%	0	-	-	-	-	-
POLR2M	81488	genome.wustl.edu	37	15	58001173	58001173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015532.3	+1	reviewed	p.Q125H	0.007	107	0%	86	38.4%	1	100%	possibly_damaging(0.519)	tolerated(0.1)	neutral(0.461)	NULL
RNF111	54778	genome.wustl.edu	37	15	59368377	59368380	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	CTCT	CTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017610.6	+1	reviewed	p.L639fs	0.975:0.997:1.000:0.991	-	-	-	-	-	-	-	-	-	NULL
CILP	8483	genome.wustl.edu	37	15	65491256	65491256	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003613.3	-1	reviewed	p.G456	0.297	71	0%	43	14%	1	0%	-	-	-	NULL
AAGAB	79719	genome.wustl.edu	37	15	67524165	67524165	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024666.3	-1	validated	p.V174	0.934	392	0%	467	40.5%	7	42.8%	-	-	-	HMMPfam_Adaptin_binding
MAN2C1	4123	genome.wustl.edu	37	15	75652479	75652479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006715.2	-1	validated	p.R553H	0.266	49	0%	44	34.1%	20	25%	possibly_damaging(0.909)	tolerated(0.16)	neutral(0.421)	HMMPfam_Alpha-mann_mid,superfamily_SSF88688
KIAA1199	57214	genome.wustl.edu	37	15	81225673	81225673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018689.1	+1	validated	p.V961I	0.939	83	0%	100	41%	4	50%	benign(0.01)	tolerated(0.62)	neutral(0.005)	NULL
ZNF592	9640	genome.wustl.edu	37	15	85341105	85341105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014630.2	+1	validated	p.I802T	1.000	57	0%	65	44.6%	6	0%	probably_damaging(0.991)	tolerated(0.28)	deleterious(0.476)	HMMSmart_ZnF_C2H2
AKAP13	11214	genome.wustl.edu	37	15	86087045	86087045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006738.4	+1	reviewed	p.L174P	1.000	120	0%	123	44.7%	0	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	superfamily_ANK
KLHL25	64410	genome.wustl.edu	37	15	86311486	86311486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022480.3	-1	validated	p.T519M	1.000	41	0%	37	35.1%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
SYNM	23336	genome.wustl.edu	37	15	99669982	99669982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000336292	+1	known	p.R472W	0.000	72	0%	55	21.8%	0	-	benign(0.017)	tolerated(0.1)	neutral(0.287)	NULL
ENSG00000214394	0	genome.wustl.edu	37	15	100332876	100332876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000398270	+1	known	p.P135H	0.092	85	0%	50	18%	0	-	-	-	-	NULL
HMOX2	3163	genome.wustl.edu	37	16	4556923	4556923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001127204.1	+1	reviewed	p.K38N	1.000	214	0%	202	40.1%	17	11.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
ABAT	18	genome.wustl.edu	37	16	8875213	8875213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000663.4	+1	reviewed	p.T477A	0.999	338	0%	174	43.1%	2	0%	benign(0.002)	tolerated(0.62)	neutral(0.004)	superfamily_PyrdxlP-dep_Trfase_major
GRIN2A	2903	genome.wustl.edu	37	16	9943803	9943803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000833.3	-1	reviewed	p.N380D	1.000	88	0%	116	12.1%	0	-	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	superfamily_Periplasmic binding protein-like I
CIITA	4261	genome.wustl.edu	37	16	10971205	10971205	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000246.3	+1	reviewed	p.P6	0.015	11	0%	18	50%	0	-	-	-	-	NULL
RSL1D1	26156	genome.wustl.edu	37	16	11941653	11941653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015659.2	-1	validated	p.H86N	0.785	226	0%	173	41.6%	23	43.4%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Ribosomal protein L1
UMOD	7369	genome.wustl.edu	37	16	20359847	20359847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001008389.1	-1	reviewed	p.D259G	0.016	12	0%	10	40%	0	-	benign(0.03)	tolerated(0.11)	neutral(0.273)	NULL
OTOA	146183	genome.wustl.edu	37	16	21721386	21721386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144672.3	+1	reviewed	p.V428I	0.953	71	0%	47	46.8%	0	-	benign(0.002)	tolerated(0.78)	neutral(0.001)	NULL
SCNN1B	6338	genome.wustl.edu	37	16	23392047	23392047	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000336.2	+1	reviewed	p.P616	0.695	31	0%	19	31.6%	0	-	-	-	-	NULL
COG7	91949	genome.wustl.edu	37	16	23444942	23444942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153603.3	-1	reviewed	p.S245F	0.034	110	0%	112	22.3%	2	100%	benign(0.029)	deleterious(0.04)	neutral(0.350)	HMMPfam_COG7
DCTN5	84516	genome.wustl.edu	37	16	23669906	23669906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032486.2	+1	provisional	p.R66C	1.000	157	0%	145	39.3%	6	0%	benign(0.011)	tolerated(0.05)	neutral(0.346)	HMMPfam_Hexapep,superfamily_Trimeric LpxA-like enzymes
XPO6	23214	genome.wustl.edu	37	16	28128658	28128658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015171.2	-1	provisional	p.T662I	1.000	194	0%	182	19.8%	9	22.2%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_ARM repeat
ATP2A1	487	genome.wustl.edu	37	16	28911903	28911903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173201.2	+1	reviewed	p.T589M	0.968	65	0%	47	19.1%	1	100%	benign(0.077)	deleterious(0.03)	neutral(0.370)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
LOC728888	728888	genome.wustl.edu	37	16	29401632	29401632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002343430.1	-1	model	p.G96E	0.001	395	0%	430	13.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_NPIP
KCTD13	253980	genome.wustl.edu	37	16	29934552	29934552	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178863.2	-1	provisional	p.L125V	1.000	32	0%	39	23.1%	9	22.2%	possibly_damaging(0.659)	tolerated(0.39)	neutral(0.248)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
HIRIP3	8479	genome.wustl.edu	37	16	30006497	30006497	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003609.2	-1	reviewed	p.T76	0.096	65	0%	47	48.9%	2	50%	-	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30977127	30977127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014712.1	+1	provisional	p.P642L	0.150	37	0%	26	69.2%	1	0%	probably_damaging(0.994)	-	-	NULL
STX4	6810	genome.wustl.edu	37	16	31049331	31049331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004604.3	+1	provisional	p.R155W	1.000	113	0.9%	98	36.7%	28	17.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_t-snare
PRSS36	146547	genome.wustl.edu	37	16	31157201	31157201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173502.3	-1	validated	p.Y210C	0.358	17	0%	12	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITGAD	3681	genome.wustl.edu	37	16	31414821	31414821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005353.2	+1	validated	p.F187L	1.000	306	0.3%	247	11.7%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
C16orf87	388272	genome.wustl.edu	37	16	46843570	46843570	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001001436.2	-1	predicted	p.R97	1.000	721	0%	1017	24.6%	4	0%	-	-	-	NULL
ITFG1	81533	genome.wustl.edu	37	16	47409816	47409816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030790.3	-1	provisional	p.T231A	0.000	53	0%	51	11.8%	12	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
PHKB	5257	genome.wustl.edu	37	16	47698848	47698848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000293.2	+1	reviewed	p.A797T	1.000	103	0%	96	28.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PHK_AB
CNEP1R1	255919	genome.wustl.edu	37	16	50063634	50063634	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153261.4	+1	provisional	e4-2	1.000	80	0%	85	23.5%	1	0%	-	-	-	-
NLRC5	84166	genome.wustl.edu	37	16	57099124	57099124	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032206.3	+1	validated	p.R1385	1.000	22	0%	10	40%	1	0%	-	-	-	superfamily_RNI-like
NLRC5	84166	genome.wustl.edu	37	16	57116373	57116373	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032206.3	+1	validated	p.K1845R	0.989	52	0%	36	19.4%	4	50%	benign(0.009)	tolerated(0.64)	neutral(0.004)	superfamily_RNI-like
POLR2C	5432	genome.wustl.edu	37	16	57504202	57504202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032940.2	+1	reviewed	p.E207K	1.000	41	0%	30	26.7%	16	37.5%	possibly_damaging(0.869)	tolerated(0.36)	neutral(0.357)	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMSmart_SM00662
CDH8	1006	genome.wustl.edu	37	16	61858971	61858971	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001796.2	-1	reviewed	p.T260	0.000	146	0%	218	28%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC9A5	6553	genome.wustl.edu	37	16	67286645	67286645	+	Missense_Mutation	SNP	G	G	A	rs78465521		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004594.2	+1	validated	p.D130N	1.000	90	1.1%	72	41.7%	0	-	benign(0.235)	tolerated(0.12)	neutral(0.284)	HMMPfam_Na_H_Exchanger
GFOD2	81577	genome.wustl.edu	37	16	67709642	67709642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030819.3	-1	validated	p.R192W	0.198	34	0%	28	42.9%	8	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_GFO_IDH_MocA_C,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
PRMT7	54496	genome.wustl.edu	37	16	68373257	68373257	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_019023.2	+1	validated	p.T179	0.977	172	0%	110	40%	6	16.6%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TMCO7	79613	genome.wustl.edu	37	16	68894118	68894118	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024562.1	+1	validated	p.Q142	1.000	201	0%	186	11.8%	0	-	-	-	-	NULL
TERF2	7014	genome.wustl.edu	37	16	69390813	69390813	+	Silent	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005652.2	-1	reviewed	p.L497	1.000	370	0%	315	35.6%	5	40%	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like
DHODH	1723	genome.wustl.edu	37	16	72058060	72058060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001361.3	+1	reviewed	p.G384R	0.019	49	0%	50	22%	9	44.4%	benign(0)	tolerated(0.11)	neutral(0.272)	superfamily_SSF51395
DHX38	9785	genome.wustl.edu	37	16	72132848	72132848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014003.3	+1	reviewed	p.D263N	0.955	27	0%	19	42.1%	3	33.3%	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72828912	72828913	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006885.3	-1	reviewed	p.Q2557fs	1.000:0.725	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CENPN	55839	genome.wustl.edu	37	16	81066215	81066215	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001100625.1	+1	validated	p.G326	0.135	46	0%	38	36.8%	0	-	-	-	-	HMMPfam_CHL4
PKD1L2	114780	genome.wustl.edu	37	16	81157325	81157325	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_052892.3	-1	reviewed	p.S2138	1.000	203	0%	156	32.7%	0	-	-	-	-	NULL
ZC3H18	124245	genome.wustl.edu	37	16	88677692	88677693	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144604.3	+1	validated	p.E411fs	0.616:0.522	-	-	-	-	-	-	-	-	-	NULL
FAM57A	79850	genome.wustl.edu	37	17	641248	641248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024792.1	+1	provisional	p.H123Q	1.000	111	0%	71	21.1%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
MYO1C	4641	genome.wustl.edu	37	17	1370833	1370833	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001080779.1	-1	reviewed	p.T1002	0.866	22	0%	14	50%	42	28.5%	-	-	-	HMMPfam_Myosin_TH1
PITPNA	5306	genome.wustl.edu	37	17	1437461	1437461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006224.3	-1	reviewed	p.K234E	1.000	435	0%	367	23.4%	20	15%	benign(0)	tolerated(1)	-	HMMPfam_IP_trans,superfamily_SSF55961
RAP1GAP2	23108	genome.wustl.edu	37	17	2898708	2898708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015085.4	+1	reviewed	p.I331T	1.000	200	0%	111	26.1%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
OR3A3	8392	genome.wustl.edu	37	17	3324202	3324202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012373.2	+1	validated	p.H114R	0.308	245	0%	234	26.9%	0	-	possibly_damaging(0.821)	tolerated(0.35)	neutral(0.331)	HMMPfam_7tm_1,superfamily_SSF81321
SHPK	23729	genome.wustl.edu	37	17	3514144	3514144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013276.2	-1	reviewed	p.A383T	1.000	55	0%	26	42.3%	3	0%	probably_damaging(0.969)	deleterious(0.02)	deleterious(0.794)	superfamily_Actin-like ATPase domain
CYB5D2	124936	genome.wustl.edu	37	17	4047117	4047117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144611.3	+1	validated	p.A23V	0.145	32	0%	27	40.7%	8	37.5%	unknown(0)	tolerated(1)	-	NULL
ALOX15	246	genome.wustl.edu	37	17	4540505	4540505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001140.3	-1	validated	p.A286T	1.000	55	0%	37	29.7%	0	-	benign(0.12)	tolerated(0.43)	neutral(0.023)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
MED31	51003	genome.wustl.edu	37	17	6553752	6553752	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016060.2	-1	validated	p.D10	1.000	173	0%	173	24.9%	2	0%	-	-	-	NULL
PHF23	79142	genome.wustl.edu	37	17	7139748	7139748	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024297.2	-1	validated	p.P166	0.918	46	0%	44	34.1%	15	46.6%	-	-	-	NULL
NEURL4	84461	genome.wustl.edu	37	17	7221995	7221995	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032442.2	-1	validated	e23-2	1.000	20	5%	23	39.1%	2	100%	-	-	-	-
POLR2A	5430	genome.wustl.edu	37	17	7415238	7415238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000937.3	+1	validated	p.T1404A	1.000	123	0.8%	164	12.8%	27	0%	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
FXR2	9513	genome.wustl.edu	37	17	7497268	7497268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004860.3	-1	reviewed	p.A359S	1.000	77	0%	84	38.1%	3	33.3%	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
DNAH2	146754	genome.wustl.edu	37	17	7720970	7720970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020877.2	+1	validated	p.G3371V	1.000	388	0%	289	36%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP43	124739	genome.wustl.edu	37	17	9631600	9631600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153210.3	+1	validated	p.G889R	0.000	19	0%	22	45.5%	13	46.1%	benign(0.106)	tolerated(0.09)	neutral(0.304)	NULL
FAM18B2	201158	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000438826	-1	known	e7-2	0.998	125	0%	165	22.4%	0	-	-	-	-	-
NCOR1	9611	genome.wustl.edu	37	17	15965087	15965087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006311.2	-1	reviewed	p.S1837P	0.899	239	0%	244	20.5%	4	50%	benign(0.196)	tolerated(0.21)	neutral(0.062)	NULL
USP22	23326	genome.wustl.edu	37	17	20914479	20914479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015276.1	-1	validated	p.T363M	0.997	10	0%	14	42.9%	11	45.4%	benign(0.076)	tolerated(0.26)	neutral(0.040)	HMMPfam_UCH,superfamily_Cysteine proteinases
KSR1	8844	genome.wustl.edu	37	17	25936228	25936228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014238.1	+1	validated	p.G585*	1.000	34	0%	34	38.2%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
SUZ12	23512	genome.wustl.edu	37	17	30325815	30325815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015355.2	+1	reviewed	p.I671M	1.000	93	0%	88	39.8%	2	0%	possibly_damaging(0.512)	tolerated(0.05)	deleterious(0.517)	HMMPfam_VEFS-Box
ENSG00000224113	0	genome.wustl.edu	37	17	33332679	33332679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000415412	+1	known	p.L134S	1.000	148	0%	122	21.3%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_DUF2055
SLFN5	162394	genome.wustl.edu	37	17	33586076	33586076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144975.3	+1	validated	p.T123A	0.000	246	0%	178	25.3%	2	50%	possibly_damaging(0.792)	tolerated(0.1)	deleterious(0.583)	NULL
SLFN5	162394	genome.wustl.edu	37	17	33592182	33592182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144975.3	+1	validated	p.A651T	1.000	193	0%	182	38.5%	3	33.3%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33680012	33680012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001104587.1	-1	validated	p.R690I	0.023	226	0%	272	38.2%	2	0%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MLLT6	4302	genome.wustl.edu	37	17	36864078	36864078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005937.3	+1	validated	p.M103L	1.000	20	0%	15	33.3%	1	100%	probably_damaging(0.97)	tolerated(0.34)	neutral(0.435)	NULL
CACNB1	782	genome.wustl.edu	37	17	37331811	37331811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000723.3	-1	reviewed	p.L478I	1.000	70	0%	30	26.7%	2	50%	benign(0.006)	tolerated(0.38)	neutral(0.018)	NULL
RPL19	6143	genome.wustl.edu	37	17	37359332	37359332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000981.3	+1	reviewed	p.Y109C	1.000	167	0%	135	20%	1632	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ribosomal_L19e,superfamily_Ribosomal protein L19 (L19e)
TNS4	84951	genome.wustl.edu	37	17	38640755	38640755	+	Silent	SNP	C	C	T	rs11868898	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032865.5	-1	validated	p.A494	0.002	54	0%	33	36.4%	0	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
KRT27	342574	genome.wustl.edu	37	17	38938717	38938717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_181537.3	-1	reviewed	p.R10M	0.659	31	0%	27	25.9%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
KRT15	3866	genome.wustl.edu	37	17	39673406	39673406	+	Silent	SNP	G	G	T	rs182080944	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002275.3	-1	reviewed	p.T170	0.999	91	0%	54	51.9%	0	-	-	-	-	HMMPfam_Filament
KRT14	3861	genome.wustl.edu	37	17	39742850	39742852	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000526.4	-1	reviewed	p.S79in_frame_del	0.969:0.977:0.991	-	-	-	-	-	-	-	-	-	NULL
RAB5C	5878	genome.wustl.edu	37	17	40277886	40277886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004583.2	-1	validated	p.N189I	1.000	38	0%	35	28.6%	71	30.9%	benign(0.028)	tolerated(0.05)	neutral(0.347)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
HSD17B1	3292	genome.wustl.edu	37	17	40706586	40706588	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000413.2	+1	validated	p.E236in_frame_del	0.972:0.998:0.998	-	-	-	-	-	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
PSMC3IP	29893	genome.wustl.edu	37	17	40729247	40729247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016556.2	-1	validated	p.I70T	1.000	70	0%	67	38.8%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_TBPIP
DHX8	1659	genome.wustl.edu	37	17	41598890	41598890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004941.1	+1	reviewed	p.R1074W	1.000	134	0.7%	97	38.1%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM101	84336	genome.wustl.edu	37	17	42089360	42089360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032376.2	-1	provisional	p.M237T	1.000	76	0%	79	13.9%	92	4.3%	benign(0.15)	tolerated(0.06)	neutral(0.336)	NULL
GRN	2896	genome.wustl.edu	37	17	42429099	42429099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002087.2	+1	reviewed	p.C372Y	1.000	30	0%	21	47.6%	523	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00277,superfamily_Granulin repeat
C17orf104	284071	genome.wustl.edu	37	17	42744615	42744615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001145080.2	+1	validated	p.K446E	1.000	364	0%	272	26.8%	0	-	possibly_damaging(0.882)	tolerated(0.11)	deleterious(0.616)	NULL
ENSG00000249872	0	genome.wustl.edu	37	17	44627770	44627770	+	RNA	SNP	T	T	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000510581	-1	novel	NULL	0.000	118	0%	72	15.3%	0	-	-	-	-	-
SPOP	8405	genome.wustl.edu	37	17	47677757	47677758	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001007226.1	-1	reviewed	p.R369fs	1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
AKAP1	8165	genome.wustl.edu	37	17	55183287	55183287	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003488.3	+1	reviewed	p.G154	0.000	58	0%	37	29.7%	1	0%	-	-	-	NULL
AKAP1	8165	genome.wustl.edu	37	17	55184384	55184384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003488.3	+1	reviewed	p.C520Y	0.364	123	0%	123	17.9%	10	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
RNFT1	51136	genome.wustl.edu	37	17	58041999	58041999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_016125.3	-1	validated	p.P9Q	0.000	5	0.000	6	0.667	4	0%	unknown(0)	deleterious(0)	-	NULL
HEATR6	63897	genome.wustl.edu	37	17	58124720	58124720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022070.4	-1	validated	p.L907F	1.000	100	0%	111	23.4%	3	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ARM-type_fold
PPM1D	8493	genome.wustl.edu	37	17	58740749	58740749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003620.2	+1	reviewed	p.R552*	0.999	184	0%	155	34.2%	3	66.6%	-	-	-	NULL
INTS2	57508	genome.wustl.edu	37	17	59949800	59949800	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020748.2	-1	validated	p.I876	0.999	50	0%	69	42%	1	0%	-	-	-	NULL
MED13	9969	genome.wustl.edu	37	17	60045496	60045496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005121.2	-1	reviewed	p.G1364V	1.000	174	0%	201	38.8%	2	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_TRAP_240kDa
MAP3K3	4215	genome.wustl.edu	37	17	61766214	61766214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_203351.1	+1	reviewed	p.S313P	1.000	75	0%	66	25.8%	6	16.6%	benign(0.017)	tolerated(0.25)	neutral(0.037)	NULL
CEP95	90799	genome.wustl.edu	37	17	62530846	62530846	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138363.1	+1	provisional	p.R687	0.998	66	0%	85	31.8%	8	25%	-	-	-	NULL
GNA13	10672	genome.wustl.edu	37	17	63052633	63052633	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006572.4	-1	validated	p.Q27*	1.000	27	0%	46	41.3%	1	0%	-	-	-	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases
AXIN2	8313	genome.wustl.edu	37	17	63545706	63545706	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004655.3	-1	reviewed	p.S296	0.943	16	0%	20	40%	3	33.3%	-	-	-	NULL
SEPT9	10801	genome.wustl.edu	37	17	75398287	75398287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001113491.1	+1	reviewed	p.A75T	0.690	31	0%	39	61.5%	23	39.1%	benign(0.011)	tolerated(0.35)	neutral(0.021)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76475712	76475712	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000389840	-1	known	p.R2571	0.980	109	0%	95	27.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ALYREF	10189	genome.wustl.edu	37	17	79847124	79847124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005782.3	-1	reviewed	p.V151M	0.998	42	0%	34	32.4%	42	28.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TBCD	6904	genome.wustl.edu	37	17	80885165	80885165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005993.4	+1	reviewed	p.Y859H	1.000	21	0%	23	17.4%	28	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
DLGAP1	9229	genome.wustl.edu	37	18	3879769	3879769	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004746.2	-1	provisional	p.P100	0.021	19	0%	10	40%	0	-	-	-	-	NULL
ZFP161	7541	genome.wustl.edu	37	18	5291269	5291269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001143823.1	-1	validated	p.G313V	1.000	60	0%	68	38.2%	2	0%	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
APCDD1	147495	genome.wustl.edu	37	18	10485616	10485616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153000.4	+1	validated	p.R311H	1.000	197	0%	35	37.1%	49	8.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTAGE1	64693	genome.wustl.edu	37	18	19996313	19996313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_172241.2	-1	validated	p.Y488H	0.122	676	0%	584	40.1%	0	-	probably_damaging(0.965)	tolerated(0.05)	deleterious(0.752)	NULL
DSG1	1828	genome.wustl.edu	37	18	28934819	28934819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001942.2	+1	reviewed	p.R887Q	0.985	287	0%	324	23.5%	0	-	possibly_damaging(0.95)	tolerated(0.2)	neutral(0.443)	NULL
MCART2	147407	genome.wustl.edu	37	18	29340474	29340474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001034172.2	-1	validated	p.I51V	0.998	190	0%	254	22%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ASXL3	80816	genome.wustl.edu	37	18	31325928	31325928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030632.1	+1	provisional	p.P2039H	0.848	11	0.000	9	0.556	0	-	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	NULL
TNFRSF11A	8792	genome.wustl.edu	37	18	60036509	60036509	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003839.2	+1	reviewed	p.P453	0.098	34	0%	37	45.9%	0	-	-	-	-	NULL
SERPINB12	89777	genome.wustl.edu	37	18	61231352	61231352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_080474.1	+1	provisional	p.A215V	0.995	221	0%	254	35.8%	0	-	benign(0.03)	tolerated(0.08)	neutral(0.301)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
RTTN	25914	genome.wustl.edu	37	18	67806906	67806906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173630.3	-1	validated	p.V906A	0.146	417	0.2%	794	27%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72632559	72632559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_017757.2	+1	reviewed	p.Y1780C	0.577	66	0%	106	25.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ADNP2	22850	genome.wustl.edu	37	18	77895310	77895310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014913.3	+1	validated	p.V672M	0.000	51	0%	41	29.3%	4	25%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
EEF2	1938	genome.wustl.edu	37	19	3981438	3981438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001961.3	-1	reviewed	p.I304V	0.998	70	0%	72	15.3%	206	0.4%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
FEM1A	55527	genome.wustl.edu	37	19	4792785	4792785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018708.2	+1	validated	p.T307A	1.000	42	0%	24	41.7%	5	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ANK
FEM1A	55527	genome.wustl.edu	37	19	4793028	4793028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018708.2	+1	validated	p.D388N	1.000	53	0%	40	47.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
PTPRS	5802	genome.wustl.edu	37	19	5210529	5210529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002850.3	-1	reviewed	p.Y1813C	1.000	29	0%	56	30.4%	24	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
FUT6	2528	genome.wustl.edu	37	19	5832140	5832140	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000150.2	-1	reviewed	p.A147P	0.005	25	0%	11	63.6%	0	-	benign(0.022)	tolerated(0.22)	neutral(0.043)	HMMPfam_Glyco_transf_10
SLC25A23	79085	genome.wustl.edu	37	19	6454401	6454401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024103.2	-1	validated	p.R243H	1.000	72	0%	70	42.9%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
EMR1	2015	genome.wustl.edu	37	19	6924857	6924857	+	Missense_Mutation	SNP	G	G	A	rs188529490	by1000genomes	TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001974.3	+1	reviewed	p.A654T	0.090	448	0%	295	36.3%	1	0%	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9407498	9407498	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198535.1	-1	provisional	p.S194	0.001	208	0%	256	40.2%	0	-	-	-	-	superfamily_SSF57667
P2RY11	5032	genome.wustl.edu	37	19	10224597	10224597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002566.4	+1	reviewed	p.R103H	0.998	27	0%	24	45.8%	12	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KEAP1	9817	genome.wustl.edu	37	19	10610156	10610156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012289.3	-1	reviewed	p.I185T	1.000	26	0%	20	30%	8	37.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_BACK
ZNF700	90592	genome.wustl.edu	37	19	12059358	12059358	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_144566.1	+1	provisional	p.K173	0.621	286	0%	284	26.1%	6	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575674	12575674	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152601.3	-1	validated	p.H354	0.004	197	0%	248	40.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LPAR2	9170	genome.wustl.edu	37	19	19737965	19737965	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004720.5	-1	reviewed	p.S43	0.970	12	0%	16	50%	11	36.3%	-	-	-	superfamily_SSF81321
ZNF486	90649	genome.wustl.edu	37	19	20296826	20296826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_052852.2	+1	provisional	p.T63I	0.066	304	0%	325	40%	0	-	possibly_damaging(0.532)	tolerated(0.11)	neutral(0.452)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF486	90649	genome.wustl.edu	37	19	20308278	20308278	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_052852.2	+1	provisional	p.F253	0.007	284	0%	207	22.7%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22497378	22497378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_002343636.1	+1	model	p.W254R	0.000	509	0%	511	13.5%	0	-	probably_damaging(0.954)	tolerated(0.36)	neutral(0.418)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RPSAP58	388524	genome.wustl.edu	37	19	24010209	24010209	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000354585	+1	known	p.T82	1.000	37	0%	44	27.3%	118	0%	-	-	-	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2
ZNF726	730087	genome.wustl.edu	37	19	24115723	24115723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000322487	+1	known	p.S269P	0.000	113	0%	122	26.2%	0	-	benign(0.017)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CEP89	84902	genome.wustl.edu	37	19	33428560	33428560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032816.3	-1	validated	p.C215Y	0.227	267	0%	267	21.3%	2	50%	benign(0.026)	tolerated(1)	neutral(0.001)	NULL
FAM187B	148109	genome.wustl.edu	37	19	35715879	35715879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152481.1	-1	provisional	p.R320M	0.000	27	0%	18	38.9%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36355566	36355566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_199180.2	+1	validated	p.T581I	0.039	69	0%	63	36.5%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
HCST	10870	genome.wustl.edu	37	19	36394287	36394287	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014266.3	+1	reviewed	p.S26	0.000	110	0%	57	33.3%	31	3.2%	-	-	-	HMMPfam_DAP10
SIPA1L3	23094	genome.wustl.edu	37	19	38682871	38682871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015073.1	+1	validated	p.Y1506C	1.000	36	0%	60	21.7%	4	25%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38860873	38860873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021185.4	+1	validated	p.P1063H	0.000	71	0%	43	39.5%	1	0%	possibly_damaging(0.849)	deleterious(0.01)	deleterious(0.732)	NULL
RYR1	6261	genome.wustl.edu	37	19	39018985	39018985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000540.2	+1	reviewed	p.K3622E	1.000	85	0%	62	21%	0	-	probably_damaging(0.997)	-	-	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39955574	39955574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001111020.2	+1	validated	p.M254T	1.000	73	0%	71	35.2%	10	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Supt5,HMMSmart_SM00738
SUPT5H	6829	genome.wustl.edu	37	19	39955602	39955602	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001111020.2	+1	validated	p.V263	0.999	84	0%	79	38%	10	10%	-	-	-	HMMPfam_Supt5,HMMSmart_SM00738
LOC148003	148003	genome.wustl.edu	37	19	40149114	40149114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	XM_001721341.1	+1	model	p.L66P	0.684	61	0%	99	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
HNRNPUL1	11100	genome.wustl.edu	37	19	41809939	41809941	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007040.3	+1	reviewed	p.N681in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CEACAM21	90273	genome.wustl.edu	37	19	42085894	42085894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001098506.1	+1	validated	p.R205G	0.000	55	0%	59	39%	4	0%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF526	116115	genome.wustl.edu	37	19	42729648	42729648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_133444.1	+1	provisional	p.C365S	1.000	45	0%	41	17.1%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CIC	23152	genome.wustl.edu	37	19	42798425	42798425	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015125.3	+1	validated	p.C1432	0.982	13	0%	14	35.7%	33	60.6%	-	-	-	NULL
PHLDB3	653583	genome.wustl.edu	37	19	43982215	43982215	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198850.3	-1	validated	p.L591*	1.000	28	0%	28	28.6%	4	75%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZNF221	7638	genome.wustl.edu	37	19	44469198	44469198	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013359.2	+1	validated	p.L60	0.898	336	0%	375	36.5%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
CKM	1158	genome.wustl.edu	37	19	45818799	45818799	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001824.2	-1	reviewed	p.R135	1.000	51	0%	35	17.1%	0	-	-	-	-	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
SYMPK	8189	genome.wustl.edu	37	19	46332333	46332333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004819.2	-1	reviewed	p.Y627C	1.000	67	0%	50	22%	23	56.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CARD8	22900	genome.wustl.edu	37	19	48733801	48733801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014959.3	-1	reviewed	p.R204H	0.000	241	0%	236	42.8%	5	40%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	NULL
LMTK3	114783	genome.wustl.edu	37	19	49001376	49001376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001080434.1	-1	provisional	p.A1013T	0.056	78	0%	64	18.8%	1	0%	unknown(0)	deleterious(0)	-	HMMSmart_SM00220
GYS1	2997	genome.wustl.edu	37	19	49494701	49494701	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002103.4	-1	reviewed	p.V53G	1.000	46	0%	39	10.3%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Glycogen_syn
IZUMO2	126123	genome.wustl.edu	37	19	50666318	50666318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152358.2	-1	validated	p.Q45R	0.446	34	0%	21	23.8%	0	-	possibly_damaging(0.484)	tolerated(0.16)	neutral(0.220)	NULL
KLK4	9622	genome.wustl.edu	37	19	51412021	51412021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004917.3	-1	reviewed	p.V97M	0.000	70	0%	48	50%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FPR2	2358	genome.wustl.edu	37	19	52272780	52272780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001005738.1	+1	validated	p.L290P	0.999	219	0%	262	24%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP2R1A	5518	genome.wustl.edu	37	19	52716266	52716266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014225.5	+1	reviewed	p.Q237R	1.000	32	0%	27	44.4%	90	50%	benign(0)	tolerated(0.42)	neutral(0.014)	superfamily_ARM repeat
ZNF600	162966	genome.wustl.edu	37	19	53270004	53270004	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198457.2	-1	validated	p.C335	1.000	817	0%	581	24.6%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF525	170958	genome.wustl.edu	37	19	53883996	53883996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000474037	+1	known	p.M55T	0.004	342	0%	273	18.7%	0	-	possibly_damaging(0.575)	tolerated(0.13)	neutral(0.450)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF761	388561	genome.wustl.edu	37	19	53959462	53959462	+	Silent	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001008401.3	+1	validated	p.R567	0.013	304	0%	258	19%	3	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
TMC4	147798	genome.wustl.edu	37	19	54673367	54673367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001145303.1	-1	validated	p.Y115H	0.000	86	0%	61	37.7%	20	45%	benign(0.077)	tolerated(0.47)	neutral(0.017)	NULL
LAIR1	3903	genome.wustl.edu	37	19	54872667	54872667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002287.3	-1	reviewed	p.V74M	0.000	194	0%	134	35.1%	1	0%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRB1	10859	genome.wustl.edu	37	19	55148307	55148307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001081637.1	+1	reviewed	p.Y646C	0.000	44	0%	35	37.1%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIR3DL1	3811	genome.wustl.edu	37	19	55329899	55329899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_013289.2	+1	reviewed	p.H67R	0.000	356	0%	273	34.8%	0	-	possibly_damaging(0.797)	tolerated(0.43)	neutral(0.313)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
U2AF2	11338	genome.wustl.edu	37	19	56170576	56170576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007279.2	+1	reviewed	p.E17G	1.000	13	0%	12	41.7%	21	33.3%	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	NULL
ZNF587	84914	genome.wustl.edu	37	19	58370389	58370389	+	Silent	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000339656	+1	known	p.P203	0.007	731	0%	604	11.3%	0	-	-	-	-	NULL
ZNF417	147687	genome.wustl.edu	37	19	58421037	58421037	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152475.2	-1	validated	p.P203	0.000	226	0%	173	15%	0	-	-	-	-	NULL
ZNF606	80095	genome.wustl.edu	37	19	58500064	58500064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025027.3	-1	validated	p.A68V	0.997	546	0%	523	13.8%	2	0%	probably_damaging(0.979)	tolerated(0.18)	deleterious(0.478)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
TGM3	7053	genome.wustl.edu	37	20	2308948	2308948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003245.3	+1	reviewed	p.S424G	1.000	57	0%	45	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cysteine proteinases
SNRPB	6628	genome.wustl.edu	37	20	2444404	2444404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198216.1	-1	reviewed	p.P137T	1.000	273	0%	377	12.7%	155	1.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
PTPRA	5786	genome.wustl.edu	37	20	3016504	3016504	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002836.3	+1	reviewed	p.D705	0.144	55	0%	56	39.3%	29	27.5%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
MAVS	57506	genome.wustl.edu	37	20	3838369	3838369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020746.3	+1	validated	p.V69L	0.998	159	0%	74	24.3%	4	0%	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	NULL
C20orf94	128710	genome.wustl.edu	37	20	10579364	10579364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001009608.1	+1	validated	p.I94V	1.000	107	0%	188	21.8%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
OTOR	56914	genome.wustl.edu	37	20	16729565	16729565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020157.2	+1	reviewed	p.F57I	1.000	167	0%	248	31.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
CSTL1	128817	genome.wustl.edu	37	20	23421000	23421000	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_138283.1	+1	reviewed	p.Q32	0.994	224	0%	202	44.6%	0	-	-	-	-	HMMSmart_CY,superfamily_SSF54403
FOXS1	2307	genome.wustl.edu	37	20	30432830	30432830	+	Silent	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004118.3	-1	reviewed	p.A172	0.206	27	0%	21	47.6%	8	0%	-	-	-	NULL
MAPRE1	22919	genome.wustl.edu	37	20	31413761	31413761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012325.2	+1	reviewed	p.V10M	1.000	169	0%	133	27.1%	6	0%	probably_damaging(0.972)	tolerated(0.16)	deleterious(0.473)	superfamily_Calponin-homology domain CH-domain
BPIFB1	92747	genome.wustl.edu	37	20	31878893	31878893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033197.2	+1	reviewed	p.R166C	0.983	48	0%	40	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
ZNF341	84905	genome.wustl.edu	37	20	32349788	32349788	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032819.3	+1	validated	p.T376	0.996	180	0%	144	11.1%	0	-	-	-	-	NULL
GGT7	2686	genome.wustl.edu	37	20	33447405	33447405	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_178026.2	-1	reviewed	p.S285	0.653	6	0.000	8	0.625	8	37.5%	-	-	-	HMMPfam_G_glu_transpept
UQCC	55245	genome.wustl.edu	37	20	33934881	33934881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000397554	-1	known	p.C220F	0.675	111	0%	125	42.4%	1	0%	possibly_damaging(0.449)	-	-	NULL
RBM39	9584	genome.wustl.edu	37	20	34302173	34302173	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_184234.1	-1	reviewed	p.L344V	1.000	183	0%	222	37.4%	53	33.9%	possibly_damaging(0.804)	tolerated(0.51)	neutral(0.311)	NULL
PLCG1	5335	genome.wustl.edu	37	20	39794947	39794947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002660.2	+1	reviewed	p.H638R	1.000	32	0%	45	37.8%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
ZSWIM1	90204	genome.wustl.edu	37	20	44511475	44511475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_080603.4	+1	validated	p.H82Y	1.000	140	0%	103	38.8%	5	60%	probably_damaging(0.989)	tolerated(0.26)	deleterious(0.474)	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51872879	51872879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_173485.4	+1	validated	p.V961A	1.000	156	0%	147	37.4%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	NULL
TFAP2C	7022	genome.wustl.edu	37	20	55211802	55211802	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003222.3	+1	reviewed	p.L353	0.983	121	0%	132	20.5%	3	0%	-	-	-	HMMPfam_TF_AP-2
TFAP2C	7022	genome.wustl.edu	37	20	55211803	55211803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003222.3	+1	reviewed	p.A354S	1.000	120	0%	131	20.6%	3	0%	possibly_damaging(0.575)	tolerated(0.13)	neutral(0.450)	HMMPfam_TF_AP-2
SPO11	23626	genome.wustl.edu	37	20	55909835	55909835	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012444.2	+1	reviewed	p.G180	0.996	53	0%	77	29.9%	0	-	-	-	-	superfamily_DNA topoisomerase IV alpha subunit
APCDD1L	164284	genome.wustl.edu	37	20	57035930	57035930	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153360.1	-1	provisional	p.K474	0.000	38	0%	36	30.6%	0	-	-	-	-	NULL
TH1L	51497	genome.wustl.edu	37	20	57568581	57568581	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198976.1	+1	reviewed	p.Q483	1.000	76	0%	92	37%	43	39.5%	-	-	-	HMMPfam_TH1
SYCP2	10388	genome.wustl.edu	37	20	58494631	58494631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014258.2	-1	reviewed	p.S107P	0.998	73	0%	97	28.9%	0	-	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	NULL
FAM217B	63939	genome.wustl.edu	37	20	58519501	58519501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_022106.1	+1	predicted	p.T168M	0.000	66	0%	108	24.1%	0	-	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	NULL
CDH4	1002	genome.wustl.edu	37	20	59829979	59829979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001794.2	+1	reviewed	p.E52G	1.000	43	0%	69	30.4%	0	-	benign(0.006)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin_pro,superfamily_Cadherin
TIAM1	7074	genome.wustl.edu	37	21	32598204	32598204	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003253.2	-1	validated	p.A549	0.005	94	0%	115	37.4%	0	-	-	-	-	HMMSmart_PH,superfamily_SSF50729
IFNAR2	3455	genome.wustl.edu	37	21	34635805	34635805	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_207585.1	+1	reviewed	p.*516W	0.149	109	0%	87	32.2%	3	0%	-	-	-	NULL
ERG	2078	genome.wustl.edu	37	21	39817445	39817445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001136154.1	-1	validated	p.D47N	1.000	54	0%	48	39.6%	2	100%	benign(0.188)	tolerated(0.06)	neutral(0.340)	NULL
AGPAT3	56894	genome.wustl.edu	37	21	45389132	45389132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001037553.1	+1	reviewed	p.R161H	0.083	27	0%	25	48%	0	-	benign(0.036)	tolerated(0.21)	neutral(0.046)	HMMPfam_Acyltransferase,HMMSmart_SM00563
TUBA8	51807	genome.wustl.edu	37	22	18613670	18613670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018943.1	+1	provisional	p.R373W	1.000	54	0%	40	45%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
PI4KA	5297	genome.wustl.edu	37	22	21104257	21104257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_058004.2	-1	reviewed	p.R1002H	1.000	50	0%	38	39.5%	5	20%	possibly_damaging(0.925)	tolerated(0.07)	deleterious(0.693)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24455783	24455783	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012295.2	+1	reviewed	p.G452	0.436	30	0%	39	46.2%	0	-	-	-	-	NULL
MYO18B	84700	genome.wustl.edu	37	22	26298584	26298584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_032608.5	+1	reviewed	p.D1610N	1.000	25	0%	34	14.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DRG1	4733	genome.wustl.edu	37	22	31819288	31819288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004147.3	+1	validated	p.A202V	1.000	522	0%	508	23.6%	15	66.6%	benign(0.002)	tolerated(0.07)	neutral(0.319)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SFI1	9814	genome.wustl.edu	37	22	32007131	32007131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001007467.1	+1	validated	p.C753R	0.009	30	0%	23	39.1%	1	100%	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
SYN3	8224	genome.wustl.edu	37	22	32929805	32929805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_003490.3	-1	reviewed	p.K357E	1.000	44	0%	28	32.1%	1	0%	unknown(0)	deleterious(0)	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
FOXRED2	80020	genome.wustl.edu	37	22	36897332	36897332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001102371.1	-1	validated	p.Y391C	1.000	147	0.7%	75	28%	6	66.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SH3BP1	23616	genome.wustl.edu	37	22	38046679	38046679	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018957.3	+1	validated	p.P515	0.000	38	0%	29	44.8%	19	26.3%	-	-	-	NULL
SREBF2	6721	genome.wustl.edu	37	22	42262839	42262839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004599.2	+1	reviewed	p.M31I	1.000	318	0%	218	34.9%	3	33.3%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
TCF20	6942	genome.wustl.edu	37	22	42610262	42610262	+	Silent	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005650.1	-1	reviewed	p.P350	0.866	266	0%	207	25.6%	1	0%	-	-	-	NULL
NUP50	10762	genome.wustl.edu	37	22	45571835	45571835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007172.3	+1	reviewed	p.R72C	1.000	104	0%	89	38.2%	1	100%	possibly_damaging(0.869)	tolerated(0.05)	deleterious(0.682)	HMMPfam_NUP50
CELSR1	9620	genome.wustl.edu	37	22	46929869	46929869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_014246.1	-1	reviewed	p.R1067W	0.129	16	0.000	9	0.444	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CRELD2	79174	genome.wustl.edu	37	22	50315313	50315313	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_024324.3	+1	validated	p.C166fs	1.000	-	-	-	-	-	-	-	-	-	PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2
TUBGCP6	85378	genome.wustl.edu	37	22	50664798	50664798	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020461.3	-1	reviewed	p.H537	0.575	12	0%	16	25%	2	50%	-	-	-	HMMPfam_Spc97_Spc98
CPT1B	1375	genome.wustl.edu	37	22	51009332	51009334	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001145135.1	-1	reviewed	p.P672in_frame_del	0.835:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
MXRA5	25878	genome.wustl.edu	37	X	3242712	3242712	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015419.3	-1	reviewed	p.K338	0.144	46	0%	79	25.3%	0	-	-	-	-	NULL
NHS	4810	genome.wustl.edu	37	X	17710558	17710558	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_198270.2	+1	reviewed	p.R274	0.990	132	0%	110	10%	0	-	-	-	-	NULL
MBTPS2	51360	genome.wustl.edu	37	X	21886608	21886608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015884.3	+1	reviewed	p.A232T	1.000	591	0%	718	34.1%	2	0%	benign(0.41)	tolerated(0.05)	deleterious(0.478)	HMMPfam_Peptidase_M50
DDX53	168400	genome.wustl.edu	37	X	23018859	23018859	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_182699.2	+1	validated	p.Q229*	0.000	167	0%	184	40.8%	0	-	-	-	-	superfamily_SSF52540
KLHL15	80311	genome.wustl.edu	37	X	24006900	24006900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030624.2	-1	reviewed	p.R318Q	0.999	231	0%	223	35.9%	0	-	possibly_damaging(0.93)	tolerated(0.26)	neutral(0.410)	HMMPfam_Kelch_1,superfamily_Gal_oxid_central
KLHL15	80311	genome.wustl.edu	37	X	24024380	24024380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_030624.2	-1	reviewed	p.G144D	1.000	324	0%	388	26.5%	0	-	benign(0.053)	tolerated(0.06)	neutral(0.326)	HMMPfam_BACK
PDK3	5165	genome.wustl.edu	37	X	24546223	24546223	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001142386.2	+1	reviewed	p.R295*	0.994	148	0%	163	39.9%	5	0%	-	-	-	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
TAB3	257397	genome.wustl.edu	37	X	30861148	30861148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_152787.3	-1	reviewed	p.A608V	1.000	70	0%	81	16%	1	0%	possibly_damaging(0.456)	deleterious(0.02)	deleterious(0.532)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027062	37027062	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001013736.2	+1	validated	p.T193	0.621	138	0.7%	121	29.8%	0	-	-	-	-	NULL
XK	7504	genome.wustl.edu	37	X	37553588	37553588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_021083.2	+1	reviewed	p.P99S	1.000	38	0%	37	24.3%	1	0%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	HMMPfam_XK-related
USP9X	8239	genome.wustl.edu	37	X	40996188	40996188	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001039590.2	+1	reviewed	p.G189	1.000	222	0%	289	26.3%	0	-	-	-	-	NULL
GPR34	2857	genome.wustl.edu	37	X	41555357	41555357	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001097579.1	+1	validated	p.N157	0.368	213	0%	236	30.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EFHC2	80258	genome.wustl.edu	37	X	44108082	44108082	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_025184.3	-1	validated	p.T313I	0.000	45	0%	56	10.7%	0	-	-	-	-	NULL
ARAF	369	genome.wustl.edu	37	X	47428426	47428426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001654.3	+1	reviewed	p.S432P	1.000	19	0%	19	47.4%	9	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
SLC38A5	92745	genome.wustl.edu	37	X	48324703	48324703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033518.2	-1	validated	p.R109Q	1.000	9	0.000	11	0.455	1	0%	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	HMMPfam_Aa_trans
CCNB3	85417	genome.wustl.edu	37	X	50053584	50053584	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_033031.2	+1	reviewed	p.Q805	0.000	93	0%	101	36.6%	0	-	-	-	-	NULL
XAGE3	170626	genome.wustl.edu	37	X	52895553	52895553	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_130776.1	-1	reviewed	p.E32	0.000	230	0%	224	16.1%	0	-	-	-	-	HMMPfam_GAGE
GPR173	54328	genome.wustl.edu	37	X	53106059	53106059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018969.5	+1	reviewed	p.G86S	1.000	21	0%	24	16.7%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
WNK3	65267	genome.wustl.edu	37	X	54265351	54265351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_020922.4	-1	reviewed	p.Y1278C	1.000	128	0%	111	36.9%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57318939	57318939	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_174912.3	+1	reviewed	p.C67	0.945	205	0%	235	23.8%	0	-	-	-	-	superfamily_Amidase signature (AS) enzymes
ZXDB	158586	genome.wustl.edu	37	X	57619724	57619724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_007157.3	+1	validated	p.R415C	0.990	119	0%	138	30.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ARHGEF9	23229	genome.wustl.edu	37	X	62875608	62875608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_015185.2	-1	reviewed	p.R356W	1.000	401	0%	748	38%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ZC3H12B	340554	genome.wustl.edu	37	X	64718907	64718907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001010888.3	+1	reviewed	p.K248N	0.997	457	0%	538	37%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MSN	4478	genome.wustl.edu	37	X	64949443	64949443	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_002444.2	+1	reviewed	p.N112	1.000	150	0%	161	41.6%	16	12.5%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
KIF4A	24137	genome.wustl.edu	37	X	69639626	69639626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_012310.4	+1	reviewed	p.N1163I	0.963	199	0%	162	23.5%	2	0%	possibly_damaging(0.471)	deleterious(0.04)	deleterious(0.504)	NULL
TAF1	6872	genome.wustl.edu	37	X	70595076	70595076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004606.3	+1	reviewed	p.P158S	0.976	219	0%	219	26.5%	0	-	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
TAF1	6872	genome.wustl.edu	37	X	70602461	70602461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_004606.3	+1	reviewed	p.K558R	1.000	298	0%	288	42.4%	3	0%	possibly_damaging(0.719)	tolerated(0.11)	deleterious(0.532)	NULL
JPX	554203	genome.wustl.edu	37	X	73289218	73289218	+	RNA	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NR_024582.1	+1	validated	NULL	0.571	30	0%	26	50%	0	-	-	-	-	-
DIAPH2	1730	genome.wustl.edu	37	X	96194341	96194341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006729.4	+1	reviewed	p.L429V	1.000	133	0%	129	38%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_Drf_FH3
DIAPH2	1730	genome.wustl.edu	37	X	96684736	96684736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006729.4	+1	reviewed	p.R1078M	1.000	131	0%	108	36.1%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
AMOT	154796	genome.wustl.edu	37	X	112054508	112054508	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001113490.1	-1	reviewed	p.R502	0.030	408	0%	388	37.9%	2	0%	-	-	-	NULL
AGTR2	186	genome.wustl.edu	37	X	115304003	115304003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000686.4	+1	reviewed	p.P157H	0.940	405	0%	686	32.8%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MIR1277	100302214	genome.wustl.edu	37	X	117520365	117520366	+	RNA	INS	-	-	AT	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000408536	+1	known	NULL	1.000:0.986	-	-	-	-	-	-	-	-	-	-
WDR44	54521	genome.wustl.edu	37	X	117540961	117540961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_019045.4	+1	reviewed	p.V502A	1.000	302	0%	373	42.6%	0	-	possibly_damaging(0.888)	tolerated(0.26)	neutral(0.381)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000223499	0	genome.wustl.edu	37	X	118207876	118207876	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000419982	+1	known	p.E197*	0.000	104	0%	86	37.2%	0	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122536914	122536914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000264357	+1	known	p.D384N	1.000	378	0%	494	38.1%	0	-	probably_damaging(0.975)	tolerated(0.23)	neutral(0.458)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
THOC2	57187	genome.wustl.edu	37	X	122747262	122747262	+	Silent	SNP	G	G	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	ENST00000441692	-1	known	p.P350L	0.849	355	0.3%	522	36.2%	15	0%	-	-	-	NULL
THOC2	57187	genome.wustl.edu	37	X	122756959	122756959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001081550.1	-1	validated	p.T1227S	1.000	298	0%	375	10.7%	7	0%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
UTP14A	10813	genome.wustl.edu	37	X	129055245	129055245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_006649.3	+1	reviewed	p.E344*	1.000	152	0%	142	21.1%	7	0%	-	-	-	HMMPfam_Utp14
IGSF1	3547	genome.wustl.edu	37	X	130408759	130408759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001555.4	-1	reviewed	p.G1189C	0.873	570	0%	568	37.5%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SAGE1	55511	genome.wustl.edu	37	X	134990290	134990290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_018666.2	+1	reviewed	p.N401S	0.007	373	0%	331	41.4%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135067766	135067766	+	Silent	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001042537.1	+1	reviewed	p.G35	0.009	125	0%	98	32.7%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135441529	135441529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153834.3	+1	reviewed	p.I2353M	0.915	563	0%	789	13.2%	0	-	probably_damaging(0.995)	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135488111	135488111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_153834.3	+1	reviewed	p.A2972V	1.000	443	0%	342	10.2%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_7tm_2
MAGEC1	9947	genome.wustl.edu	37	X	140994246	140994246	+	Silent	SNP	T	T	C	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005462.4	+1	reviewed	p.S352	0.120	953	0%	873	26%	0	-	-	-	-	NULL
UBE2NL	389898	genome.wustl.edu	37	X	142967509	142967509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001012989.1	+1	reviewed	p.R103C	1.000	235	0%	276	11.6%	0	-	possibly_damaging(0.851)	deleterious(0)	deleterious(0.772)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
MAMLD1	10046	genome.wustl.edu	37	X	149639324	149639325	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_005491.3	+1	reviewed	p.497in_frame_insQ	0.002:0.006	-	-	-	-	-	-	-	-	-	NULL
GABRA3	2556	genome.wustl.edu	37	X	151336901	151336901	+	Silent	SNP	T	T	A	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_000808.3	-1	reviewed	p.S426	0.577	412	0%	450	11.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
DNASE1L1	1774	genome.wustl.edu	37	X	153633185	153633185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A063-01A-11W-A027-09	TCGA-AX-A063-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9462422b-340f-4433-bbdd-5a3d5b7bbe5e	bf65292a-2920-48b7-96c3-d2859d3bf7c1	NM_001009932.1	-1	reviewed	p.Y99H	0.971	15	0%	21	57.1%	13	84.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,HMMSmart_DNaseIc
