Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
HMGCL	3155	genome.wustl.edu	37	1	24130916	24130923	+	Frame_Shift_Del	DEL	TGTAGACC	TGTAGACC	-	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	TGTAGACC	TGTAGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_000191.2	-1	reviewed	p.V282fs	1.000:1.000:1.000:1.000:0.972:0.985:0.804:0.084	-	-	-	-	-	-	-	-	-	HMMPfam_HMGL-like,superfamily_Aldolase
RBM15	64783	genome.wustl.edu	37	1	110883213	110883213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_022768.4	+1	validated	p.R396C	1.000	53	0%	58	34.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DENND4B	9909	genome.wustl.edu	37	1	153914376	153914376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_014856.2	-1	validated	p.V342L	0.999	13	0%	35	54.3%	13	38.4%	possibly_damaging(0.734)	tolerated(0.35)	neutral(0.289)	HMMPfam_DENN,HMMSmart_DENN
PLA2G4A	5321	genome.wustl.edu	37	1	186957571	186957571	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_024420.2	+1	reviewed	p.S727	0.859	293	0%	252	11.9%	1	0%	-	-	-	NULL
CRB1	23418	genome.wustl.edu	37	1	197297979	197297979	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_201253.1	+1	reviewed	p.G166	0.000	67	0%	61	16.4%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
USH2A	7399	genome.wustl.edu	37	1	215848334	215848334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_206933.2	-1	reviewed	p.Y4307H	0.039	362	0%	345	12.8%	0	-	probably_damaging(0.968)	tolerated(0.53)	neutral(0.417)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MGAT4A	11320	genome.wustl.edu	37	2	99274717	99274717	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_012214.2	-1	reviewed	p.D183V	1.000	213	0%	230	31.7%	2	100%	benign(0.408)	deleterious(0.02)	deleterious(0.515)	HMMPfam_Glyco_transf_54
AFF3	3899	genome.wustl.edu	37	2	100623840	100623840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_001025108.1	-1	reviewed	p.R111K	0.919	154	0%	149	21.5%	0	-	probably_damaging(0.987)	tolerated(0.25)	deleterious(0.473)	HMMPfam_AF-4
IMP4	92856	genome.wustl.edu	37	2	131102208	131102208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_033416.1	+1	provisional	p.R40L	0.956	76	0%	109	20.2%	38	36.8%	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
TTC21B	79809	genome.wustl.edu	37	2	166773889	166773889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_024753.3	-1	validated	p.P593T	1.000	262	0%	356	19.7%	4	25%	benign(0.103)	tolerated(1)	neutral(0.008)	HMMSmart_SM00028,superfamily_TPR-like
TTN	7273	genome.wustl.edu	37	2	179466476	179466476	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	ENST00000356127	-1	known	p.P15879	0.992	223	0%	333	25.8%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
DNAH7	56171	genome.wustl.edu	37	2	196602769	196602769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_018897.2	-1	validated	p.R3984K	0.996	95	0%	118	19.5%	5	40%	benign(0.067)	tolerated(0.28)	neutral(0.036)	HMMPfam_Dynein_heavy
RAPH1	65059	genome.wustl.edu	37	2	204304620	204304620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_213589.1	-1	validated	p.S1098F	0.946	33	0%	18	33.3%	0	-	benign(0.113)	deleterious(0.01)	neutral(0.415)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207431960	207431960	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_003812.2	+1	reviewed	p.R470*	0.912	139	0%	140	86.4%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
IQSEC1	9922	genome.wustl.edu	37	3	12977494	12977494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_014869.4	-1	validated	p.T355M	0.998	12	0.000	7	1.000	3	66.6%	possibly_damaging(0.458)	deleterious(0)	deleterious(0.595)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193019039	193019039	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_198505.2	-1	provisional	p.Y912	0.019	248	0%	306	48.4%	0	-	-	-	-	superfamily_SSF81665
ENSG00000163959	0	genome.wustl.edu	37	3	195955755	195955755	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	ENST00000428985	+1	known	p.C212Y	1.000	87	0%	217	18.9%	0	-	-	-	-	NULL
FGA	2243	genome.wustl.edu	37	4	155508012	155508012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_000508.3	-1	reviewed	p.R190H	0.004	160	0%	101	39.6%	0	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_Fib_alpha
NAF1	92345	genome.wustl.edu	37	4	164069551	164069551	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_138386.2	-1	validated	p.L192	0.998	380	0%	263	31.9%	2	50%	-	-	-	HMMPfam_NAF1
TRIO	7204	genome.wustl.edu	37	5	14387886	14387886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_007118.2	+1	validated	p.S1271A	1.000	101	0%	157	22.9%	3	0%	unknown(0)	tolerated(0.8)	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109103384	109103384	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_002372.2	+1	reviewed	p.L328	1.000	282	0%	190	36.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
ADAMTS19	171019	genome.wustl.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_133638.3	+1	reviewed	p.202in_frame_insPG	0.000:0.016	-	-	-	-	-	-	-	-	-	NULL
EBF1	1879	genome.wustl.edu	37	5	158140132	158140132	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_024007.3	-1	validated	p.A405	0.344	115	0%	83	77.1%	1	100%	-	-	-	NULL
HIST1H1E	3008	genome.wustl.edu	37	6	26156904	26156904	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_005321.2	+1	reviewed	p.T96S	1.000	31	0%	40	25%	2	50%	benign(0.39)	deleterious(0.02)	deleterious(0.508)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
PPP1R3A	5506	genome.wustl.edu	37	7	113518859	113518859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_002711.3	-1	reviewed	p.D763G	1.000	429	0%	234	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTAGE6P	340307	genome.wustl.edu	37	7	143453990	143453990	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_178561.4	-1	validated	p.H254	0.091	495	0.2%	404	24%	0	-	-	-	-	NULL
SNTG1	54212	genome.wustl.edu	37	8	51617182	51617182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_018967.2	+1	reviewed	p.R354Q	1.000	117	0%	100	25%	0	-	possibly_damaging(0.76)	deleterious(0.02)	deleterious(0.664)	HMMSmart_SM00233,superfamily_PH domain-like
SHB	6461	genome.wustl.edu	37	9	37974665	37974665	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_003028.2	-1	validated	p.Y336*	1.000	49	0%	46	32.6%	19	0%	-	-	-	NULL
RORB	6096	genome.wustl.edu	37	9	77280404	77280404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_006914.3	+1	reviewed	p.G298A	1.000	163	0%	111	40.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
AK1	203	genome.wustl.edu	37	9	130634103	130634103	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_000476.2	-1	reviewed	p.R108P	1.000	32	0%	53	24.5%	97	30.9%	benign(0.276)	tolerated(0.11)	neutral(0.301)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000189332	0	genome.wustl.edu	37	11	18231374	18231374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	ENST00000340135	+1	known	p.A54T	0.828	88	0%	62	32.3%	0	-	benign(0.005)	tolerated(0.39)	neutral(0.016)	superfamily_Mitochondrial carrier
ACCSL	390110	genome.wustl.edu	37	11	44074971	44074971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_001031854.2	+1	validated	p.G322C	0.998	115	0%	106	27.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
DYRK4	8798	genome.wustl.edu	37	12	4705861	4705861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_003845.1	+1	provisional	p.R176C	1.000	108	0%	116	24.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIAA0528	9847	genome.wustl.edu	37	12	22678564	22678564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_014802.1	-1	predicted	p.C142F	1.000	353	0%	302	39.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC5A8	160728	genome.wustl.edu	37	12	101581287	101581287	+	Silent	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_145913.3	-1	validated	p.L280	0.987	183	0%	160	51.2%	0	-	-	-	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104147024	104147024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_017564.9	+1	reviewed	p.R2203C	1.000	50	0%	73	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xlink,HMMSmart_LINK,superfamily_C-type_lectin_fold
MTRF1	9617	genome.wustl.edu	37	13	41797412	41797412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_004294.2	-1	reviewed	p.Y402H	1.000	531	0%	610	28.9%	5	60%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF75620
HOMEZ	57594	genome.wustl.edu	37	14	23744801	23744803	+	In_Frame_Del	DEL	CAT	CAT	-	rs148005528	byCluster;by1000genomes	TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	CAT	CAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_020834.2	-1	validated	p.D545in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0247	9766	genome.wustl.edu	37	14	70170172	70170172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_014734.3	+1	validated	p.R61T	0.996	110	0%	82	35.4%	1	0%	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HERC2	8924	genome.wustl.edu	37	15	28377309	28377309	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_004667.4	-1	reviewed	p.W4169*	1.000	18	0%	24	33.3%	4	25%	-	-	-	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
SCG5	6447	genome.wustl.edu	37	15	32983992	32983992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	ENST00000471027	+1	known	p.G181R	0.000	23	0%	21	42.9%	0	-	unknown(0)	-	-	HMMPfam_Secretogranin_V
TP53	7157	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_000546.4	-1	reviewed	p.C242fs	1.000	-	-	-	-	-	-	-	-	-	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
LSMD1	84316	genome.wustl.edu	37	17	7760710	7760710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_032356.3	-1	provisional	p.P11L	1.000	14	0%	21	42.9%	190	43.6%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
KCTD1	284252	genome.wustl.edu	37	18	24039616	24039616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_001142730.1	-1	validated	p.L803V	1.000	79	0%	54	40.7%	291	49.1%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
MUC16	94025	genome.wustl.edu	37	19	9063731	9063731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_024690.2	-1	validated	p.M7905I	0.000	149	0%	289	19.7%	0	-	unknown(0)	-	-	NULL
PRKACA	5566	genome.wustl.edu	37	19	14213659	14213659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_002730.3	-1	reviewed	p.P102L	1.000	37	0%	57	14%	66	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAST3	23031	genome.wustl.edu	37	19	18255431	18255431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_015016.1	+1	validated	p.S885G	0.026	10	0%	16	31.2%	3	33.3%	benign(0.025)	tolerated(0.11)	neutral(0.273)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36341876	36341876	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_004646.3	-1	reviewed	p.I171	1.000	33	0%	43	32.6%	3	0%	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
PSG1	5669	genome.wustl.edu	37	19	43382140	43382140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_006905.2	-1	validated	p.S119P	0.000	1169	0%	896	37.8%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CSRP2BP	57325	genome.wustl.edu	37	20	18142514	18142514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_020536.4	+1	reviewed	p.K245E	1.000	241	0%	303	23.4%	3	66.6%	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58490584	58490584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_014258.2	-1	reviewed	p.M179V	0.990	150	0%	159	24.5%	1	100%	benign(0.169)	deleterious(0.02)	neutral(0.399)	NULL
EWSR1	2130	genome.wustl.edu	37	22	29694813	29694813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_005243.3	+1	reviewed	p.R503Q	0.987	57	0%	62	37.1%	140	47.8%	unknown(0)	tolerated(0.14)	-	NULL
SF3A1	10291	genome.wustl.edu	37	22	30742368	30742368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_005877.4	-1	reviewed	p.P109R	1.000	70	0%	68	58.8%	32	46.8%	benign(0.167)	-	-	superfamily_SSF109905
WWC3	55841	genome.wustl.edu	37	X	10035295	10035295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	ENST00000398613	+1	known	p.S2I	0.041	106	0%	69	36.2%	0	-	benign(0.121)	deleterious(0)	neutral(0.454)	NULL
TMEM31	203562	genome.wustl.edu	37	X	102967277	102967277	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0IW-01A-11W-A062-09	TCGA-AX-A0IW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6dac4f71-6bdd-49f0-8f0e-d23bb784d4c9	40e0c893-d12d-46f0-b432-583464ee85e8	NM_182541.2	+1	validated	p.Q31E	0.042	353	0%	228	28.9%	1	0%	benign(0.015)	-	-	NULL
