Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
RCC2	55920	genome.wustl.edu	37	1	17743015	17743015	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001136204.1	-1	validated	p.N329	0.992	91	0%	68	11.8%	37	10.8%	-	-	-	superfamily_RCC1/BLIP-II
UBR4	23352	genome.wustl.edu	37	1	19524255	19524255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020765.2	-1	validated	p.R268C	0.989	276	0%	253	11.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HP1BP3	50809	genome.wustl.edu	37	1	21091967	21091967	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_016287.3	-1	validated	p.L265	0.984	169	0%	151	25.8%	12	25%	-	-	-	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
E2F2	1870	genome.wustl.edu	37	1	23848406	23848406	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004091.2	-1	reviewed	p.R167	0.974	162	0%	98	29.6%	0	-	-	-	-	HMMPfam_E2F_TDP,superfamily_SSF46785
NUDC	10726	genome.wustl.edu	37	1	27272108	27272108	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006600.2	+1	provisional	p.Y292F	1.000	149	0%	64	23.4%	251	21.1%	possibly_damaging(0.476)	tolerated(0.27)	neutral(0.191)	NULL
RPA2	6118	genome.wustl.edu	37	1	28220890	28220890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002946.3	-1	provisional	p.P182S	0.592	155	0%	137	25.5%	26	15.3%	benign(0.021)	tolerated(0.22)	neutral(0.043)	HMMPfam_RPA_C
ZSCAN20	7579	genome.wustl.edu	37	1	33959027	33959027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_145238.3	+1	validated	p.Y562C	1.000	239	0%	151	48.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERI3	79033	genome.wustl.edu	37	1	44687311	44687311	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024066.1	-1	validated	p.D311	1.000	134	0%	42	35.7%	108	13.8%	-	-	-	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
ATG4C	84938	genome.wustl.edu	37	1	63282472	63282472	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032852.2	+1	reviewed	p.L129	1.000	67	0%	84	25%	1	0%	-	-	-	HMMPfam_Peptidase_C54
LEPR	3953	genome.wustl.edu	37	1	66036342	66036342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002303.4	+1	reviewed	p.G76D	0.000	248	0%	267	22.5%	0	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
PIGK	10026	genome.wustl.edu	37	1	77587982	77587982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005482.2	-1	reviewed	p.P350H	1.000	199	0%	201	16.9%	6	16.6%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
AK5	26289	genome.wustl.edu	37	1	77876754	77876754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_174858.1	+1	reviewed	p.A327V	1.000	131	0%	164	26.8%	0	-	benign(0.03)	tolerated(0.11)	neutral(0.273)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82456536	82456536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_012302.2	+1	reviewed	p.L1307I	1.000	156	0%	162	24.1%	1	0%	possibly_damaging(0.677)	tolerated(0.08)	deleterious(0.541)	HMMPfam_Latrophilin
HIPK1	204851	genome.wustl.edu	37	1	114500904	114500904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_198268.1	+1	reviewed	p.A658T	1.000	80	0%	95	28.4%	3	0%	benign(0.017)	tolerated(0.3)	neutral(0.029)	NULL
CHD1L	9557	genome.wustl.edu	37	1	146747087	146747087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004284.3	+1	validated	p.N447K	1.000	149	0%	136	23.5%	8	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPRR2E	6704	genome.wustl.edu	37	1	153066223	153066223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001024209.2	-1	validated	p.S2Y	0.902	315	0%	818	19.4%	0	-	unknown(0)	-	-	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156503614	156503614	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_178229.4	-1	validated	p.H1309	0.567	80	0%	49	16.3%	4	0%	-	-	-	HMMSmart_RasGAP,superfamily_Rho_GAP
DCAF8	50717	genome.wustl.edu	37	1	160209861	160209861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015726.3	-1	reviewed	p.R117C	0.998	89	0%	135	20%	15	6.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_WD40 repeat-like
TOR1AIP1	26092	genome.wustl.edu	37	1	179887336	179887336	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015602.2	+1	validated	p.Q572*	0.134	109	0%	184	10.3%	3	0%	-	-	-	HMMPfam_LAP1C
MR1	3140	genome.wustl.edu	37	1	181019379	181019379	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001531.1	+1	provisional	p.L187	0.999	190	0%	118	11%	7	14.2%	-	-	-	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
PRELP	5549	genome.wustl.edu	37	1	203452470	203452470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002725.3	+1	reviewed	p.A53V	0.003	266	0%	238	18.5%	3	0%	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_L domain-like
USH2A	7399	genome.wustl.edu	37	1	215953192	215953192	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_206933.2	-1	reviewed	p.T3644	1.000	178	0%	227	14.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FBXO28	23219	genome.wustl.edu	37	1	224318184	224318184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015176.2	+1	validated	p.R93K	1.000	104	0%	159	27.7%	1	0%	benign(0.094)	tolerated(0.22)	neutral(0.049)	HMMPfam_F-box
C1orf101	257044	genome.wustl.edu	37	1	244724297	244724297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001130957.1	+1	validated	p.S453P	0.128	442	0%	626	18.4%	1	100%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
RAB1A	5861	genome.wustl.edu	37	2	65315809	65315809	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004161.4	-1	reviewed	p.G147fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALMS1	7840	genome.wustl.edu	37	2	73799425	73799425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015120.4	+1	reviewed	p.R3473H	1.000	358	0%	306	23.9%	1	100%	benign(0)	tolerated(1)	-	NULL
SEMA4F	10505	genome.wustl.edu	37	2	74902733	74902733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004263.3	+1	provisional	p.Q485P	1.000	175	0%	107	25.2%	5	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
VWA3B	200403	genome.wustl.edu	37	2	98846631	98846631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_144992.4	+1	provisional	p.S757P	0.000	236	0%	251	37.1%	0	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
LIMS2	55679	genome.wustl.edu	37	2	128396942	128396942	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017980.4	-1	validated	p.L338	0.995	177	0%	76	19.7%	62	9.6%	-	-	-	NULL
IMP4	92856	genome.wustl.edu	37	2	131103419	131103419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033416.1	+1	provisional	p.M169I	1.000	75	0%	51	15.7%	105	9.5%	benign(0.429)	deleterious(0.02)	deleterious(0.522)	HMMPfam_Brix
R3HDM1	23518	genome.wustl.edu	37	2	136409417	136409417	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015361.2	+1	provisional	p.Q580*	1.000	394	0%	437	21.5%	9	11.1%	-	-	-	NULL
DHRS9	10170	genome.wustl.edu	37	2	169938248	169938248	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001142270.1	+1	validated	p.G53*	1.000	242	0%	218	24.3%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
TTN	7273	genome.wustl.edu	37	2	179439742	179439742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000356127	-1	known	p.L21136S	0.942	50	0%	40	15%	1	0%	probably_damaging(0.993)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179598160	179598160	+	Missense_Mutation	SNP	G	G	A	rs148551876	by1000genomes	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000356127	-1	known	p.T4043M	1.000	324	0%	340	11.8%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179639058	179639058	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_133379.3	-1	reviewed	p.K2311	0.994	311	0%	308	39.3%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
HECW2	57520	genome.wustl.edu	37	2	197183486	197183486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020760.1	-1	provisional	p.V710I	0.990	72	0%	64	23.4%	0	-	possibly_damaging(0.882)	tolerated(0.15)	deleterious(0.585)	NULL
PARD3B	117583	genome.wustl.edu	37	2	205990395	205990395	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_152526.4	+1	validated	p.T456	1.000	255	0%	246	28.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DES	1674	genome.wustl.edu	37	2	220284818	220284818	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001927.3	+1	reviewed	p.L194	1.000	136	0%	39	17.9%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
ITM2C	81618	genome.wustl.edu	37	2	231742250	231742250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_030926.4	+1	validated	p.R233W	0.998	59	0%	11	36.4%	170	4.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NMUR1	10316	genome.wustl.edu	37	2	232393147	232393147	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006056.4	-1	validated	p.P195	1.000	36	0%	16	37.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OTOS	150677	genome.wustl.edu	37	2	241078763	241078763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_148961.3	-1	validated	p.A32T	0.995	83	0%	30	30%	7	28.5%	benign(0.002)	tolerated(0.47)	neutral(0.011)	NULL
RAF1	5894	genome.wustl.edu	37	3	12641689	12641689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002880.3	-1	reviewed	p.R318W	1.000	167	0%	114	11.4%	8	12.5%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
SATB1	6304	genome.wustl.edu	37	3	18436333	18436333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001131010.1	-1	validated	p.G276E	1.000	73	0%	83	39.8%	1	0%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001098209.1	+1	reviewed	p.D32Y	1.000	71	0%	98	11.2%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF15	56992	genome.wustl.edu	37	3	44816853	44816853	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000438321	+1	known	p.R43*	0.191	146	0%	107	34.6%	1	0%	-	-	-	NULL
ZDHHC3	51304	genome.wustl.edu	37	3	45000806	45000806	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000419642	-1	known	p.T40M	0.983	139	0%	48	25%	11	36.3%	-	-	-	NULL
ITIH3	3699	genome.wustl.edu	37	3	52840959	52840959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002217.3	+1	validated	p.S700N	0.005	41	0%	21	23.8%	2	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_ITI_HC_C
PDE12	201626	genome.wustl.edu	37	3	57545330	57545330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_177966.5	+1	validated	p.H477Y	1.000	108	0.9%	106	26.4%	2	0%	benign(0.007)	tolerated(0.64)	neutral(0.003)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
PXK	54899	genome.wustl.edu	37	3	58380796	58380796	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017771.3	+1	provisional	p.N229	1.000	286	0%	137	21.9%	3	33.3%	-	-	-	superfamily_Protein kinase-like (PK-like)
ABI3BP	25890	genome.wustl.edu	37	3	100583713	100583713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015429.3	-1	validated	p.T350S	0.164	58	0%	43	41.9%	0	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
DPPA2	151871	genome.wustl.edu	37	3	109027068	109027069	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_138815.3	-1	validated	p.R156fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PLA1A	51365	genome.wustl.edu	37	3	119334906	119334906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015900.2	+1	validated	p.G238R	1.000	106	0%	78	14.1%	29	13.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
TF	7018	genome.wustl.edu	37	3	133475720	133475720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001063.3	+1	reviewed	p.C246Y	0.993	297	0%	151	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II
ATR	545	ucsc.edu	37	3	142274739	142274740	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001184.3	-1	reviewed	p.I774fs	0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
PLCH1	23007	genome.wustl.edu	37	3	155200694	155200694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001130960.1	-1	validated	p.M1049V	0.000	147	0%	184	15.8%	1	100%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
MECOM	2122	genome.wustl.edu	37	3	168812894	168812894	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000494292	-1	known	p.L988	1.000	61	0%	79	21.5%	23	13%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PIK3CA	5290	genome.wustl.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006218.2	+1	reviewed	p.E110in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54236
TACC3	10460	genome.wustl.edu	37	4	1737482	1737482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006342.1	+1	reviewed	p.Q557E	1.000	52	0%	21	23.8%	27	3.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TACC3	10460	genome.wustl.edu	37	4	1742709	1742709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006342.1	+1	reviewed	p.R740H	0.112	28	0%	28	28.6%	32	15.6%	possibly_damaging(0.936)	tolerated(0.11)	deleterious(0.653)	HMMPfam_TACC
LIMCH1	22998	genome.wustl.edu	37	4	41648508	41648509	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014988.2	+1	validated	p.E425fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74124086	74124086	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032217.3	-1	reviewed	p.G100	0.074	70	0%	29	31%	0	-	-	-	-	NULL
BMP2K	55589	genome.wustl.edu	37	4	79747297	79747297	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_198892.1	+1	reviewed	p.E95	1.000	239	0%	298	12.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UNC5C	8633	genome.wustl.edu	37	4	96090517	96090517	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003728.2	-1	reviewed	p.P888	0.001	159	0%	167	27.5%	0	-	-	-	-	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
SEC24B	10427	genome.wustl.edu	37	4	110402918	110402918	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006323.2	+1	reviewed	p.E382	1.000	311	0%	272	14%	1	0%	-	-	-	NULL
PET112	5188	genome.wustl.edu	37	4	152681959	152681959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004564.2	-1	validated	p.G59D	1.000	39	0%	45	17.8%	4	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PDLIM3	27295	genome.wustl.edu	37	4	186423511	186423511	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014476.3	-1	reviewed	p.H344	0.993	168	0%	121	11.6%	1	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132
HCN1	348980	genome.wustl.edu	37	5	45396782	45396782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_021072.2	-1	validated	p.A348T	1.000	196	0%	207	17.9%	0	-	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	HMMPfam_Ion_trans,superfamily_SSF81324
GPR98	84059	genome.wustl.edu	37	5	89943455	89943455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032119.3	+1	reviewed	p.V1055I	0.002	348	0%	402	29.1%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Calx-beta,HMMSmart_SM00237
DDX46	9879	genome.wustl.edu	37	5	134143608	134143608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014829.2	+1	reviewed	p.R709W	1.000	149	0%	138	24.6%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
APBB3	10307	genome.wustl.edu	37	5	139942012	139942012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006051.3	-1	reviewed	p.A142T	0.996	246	0%	107	25.2%	14	14.2%	benign(0.35)	tolerated(0.07)	neutral(0.430)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
PCDHA4	56144	genome.wustl.edu	37	5	140187017	140187017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018907.2	+1	reviewed	p.G82D	1.000	71	0%	115	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA10	56139	genome.wustl.edu	37	5	140236340	140236340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018901.2	+1	reviewed	p.D236G	1.000	113	0%	86	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA1	56114	genome.wustl.edu	37	5	140712307	140712307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018912.2	+1	reviewed	p.D686N	0.000	183	0%	122	36.9%	1	0%	benign(0.012)	tolerated(0.31)	neutral(0.028)	NULL
PCDHGA8	9708	genome.wustl.edu	37	5	140772579	140772579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032088.1	+1	reviewed	p.V67I	1.000	93	0%	74	25.7%	0	-	benign(0.094)	tolerated(0.33)	neutral(0.031)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140953563	140953564	+	In_Frame_Ins	INS	-	-	GGA	rs5871778		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005219.4	-1	reviewed	p.621in_frame_insP	0.002:0.010	-	-	-	-	-	-	-	-	-	HMMPfam_Drf_FH1
PDGFRB	5159	genome.wustl.edu	37	5	149500570	149500570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002609.3	-1	reviewed	p.V823I	1.000	81	0%	33	18.2%	13	0%	benign(0.421)	tolerated(0.85)	neutral(0.137)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
SLU7	10569	genome.wustl.edu	37	5	159840560	159840560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006425.4	-1	reviewed	p.Q158R	1.000	256	0%	340	26.5%	3	0%	benign(0.018)	tolerated(0.32)	neutral(0.025)	NULL
DSP	1832	genome.wustl.edu	37	6	7580838	7580838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004415.2	+1	reviewed	p.A1472V	1.000	222	0%	253	20.6%	2	0%	possibly_damaging(0.494)	tolerated(0.4)	neutral(0.180)	NULL
HIST1H2AE	3012	genome.wustl.edu	37	6	26217360	26217360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_021052.2	+1	reviewed	p.A53V	0.999	109	0%	73	23.3%	18	44.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
MAS1L	116511	genome.wustl.edu	37	6	29455156	29455157	+	Frame_Shift_Del	DEL	AC	AC	-	rs146992654	by1000genomes	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_052967.1	-1	provisional	p.V175fs	0.055:0.055	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
FGD2	221472	genome.wustl.edu	37	6	36976695	36976695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_173558.3	+1	validated	p.R52W	0.004	129	0%	66	21.2%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
SAYSD1	55776	genome.wustl.edu	37	6	39073268	39073268	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018322.1	-1	predicted	p.G164	0.957	295	0%	254	29.1%	56	19.6%	-	-	-	HMMPfam_SAYSvFN
TREML4	285852	genome.wustl.edu	37	6	41196654	41196654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_198153.2	+1	validated	p.A89V	0.002	182	0%	118	27.1%	0	-	probably_damaging(0.954)	tolerated(0.82)	neutral(0.398)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TREM1	54210	genome.wustl.edu	37	6	41250407	41250407	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018643.2	-1	provisional	p.T44	0.000	377	0.3%	188	24.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
USP49	25862	genome.wustl.edu	37	6	41774418	41774418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018561.3	-1	provisional	p.V102F	0.700	77	0%	32	12.5%	1	0%	benign(0.403)	deleterious(0)	deleterious(0.574)	NULL
RSPH9	221421	genome.wustl.edu	37	6	43612843	43612843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_152732.3	+1	provisional	p.A3V	0.310	27	0%	17	29.4%	0	-	possibly_damaging(0.81)	tolerated(0.12)	deleterious(0.566)	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47847592	47847592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001013732.3	-1	validated	p.A313S	0.999	38	0%	43	37.2%	0	-	possibly_damaging(0.772)	tolerated(0.2)	neutral(0.336)	HMMPfam_Patched,superfamily_SSF82866
FAM83B	222584	genome.wustl.edu	37	6	54805863	54805863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001010872.1	+1	validated	p.K698N	0.876	220	0%	281	25.3%	0	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
GPR6	2830	genome.wustl.edu	37	6	110301249	110301249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005284.3	+1	validated	p.Y312N	1.000	94	0%	62	27.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_SSF81321
DSE	29940	genome.wustl.edu	37	6	116757663	116757663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001080976.1	+1	reviewed	p.G678*	0.995	199	0%	154	18.8%	2	0%	-	-	-	NULL
FAM54A	113115	genome.wustl.edu	37	6	136560911	136560911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001099286.1	-1	validated	p.S188P	0.000	179	0%	208	23.1%	1	0%	benign(0.004)	tolerated(0.43)	neutral(0.013)	HMMPfam_DUF729
SASH1	23328	genome.wustl.edu	37	6	148840728	148840728	+	Missense_Mutation	SNP	G	G	T	rs147468160	by1000genomes	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015278.3	+1	validated	p.R303L	0.120	127	0%	79	24.1%	2	0%	probably_damaging(0.991)	tolerated(0.44)	neutral(0.457)	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158504613	158504613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003898.3	+1	reviewed	p.L1006F	1.000	241	0%	133	44.4%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_DUF1866
THBS2	7058	genome.wustl.edu	37	6	169634940	169634940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003247.2	-1	reviewed	p.I514V	0.315	30	0%	31	25.8%	0	-	benign(0)	tolerated(0.93)	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
THBS2	7058	genome.wustl.edu	37	6	169648854	169648854	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003247.2	-1	reviewed	p.Q89	0.972	56	0%	66	19.7%	0	-	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
ZDHHC4	55146	genome.wustl.edu	37	7	6624877	6624877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001134387.1	+1	validated	p.V243I	0.000	74	0%	40	10%	94	23.4%	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
NEUROD6	63974	genome.wustl.edu	37	7	31377935	31377935	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_022728.2	-1	provisional	p.Y316	0.998	248	0%	148	37.8%	0	-	-	-	-	NULL
KBTBD2	25948	genome.wustl.edu	37	7	32910135	32910136	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015483.2	-1	validated	p.R231fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_BACK
NUDCD3	23386	genome.wustl.edu	37	7	44524778	44524779	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015332.3	-1	reviewed	p.A101fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	76984549	76984549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017439.3	-1	validated	p.A440V	0.000	151	0%	170	27.6%	3	66.6%	benign(0.01)	tolerated(0.23)	neutral(0.042)	NULL
GTPBP10	85865	genome.wustl.edu	37	7	90014271	90014271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033107.2	+1	validated	p.P323T	1.000	228	0.4%	225	24.4%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMURF1	57154	genome.wustl.edu	37	7	98633220	98633220	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020429.1	-1	reviewed	p.F669	0.971	119	0%	50	10%	9	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
ARPC1A	10552	genome.wustl.edu	37	7	98941951	98941951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006409.2	+1	reviewed	p.T69A	1.000	64	0%	72	20.8%	40	15%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXO24	26261	genome.wustl.edu	37	7	100198231	100198231	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033506.2	+1	reviewed	p.Q484	0.014	341	0%	166	22.9%	3	0%	-	-	-	NULL
GCC1	79571	genome.wustl.edu	37	7	127223058	127223058	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024523.5	-1	reviewed	p.A446	0.484	231	0%	124	14.5%	2	0%	-	-	-	NULL
ADAM7	8756	genome.wustl.edu	37	8	24356785	24356785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000380789	+1	known	p.V627I	0.001	265	0%	318	24.5%	0	-	possibly_damaging(0.477)	deleterious(0.01)	deleterious(0.563)	NULL
ASH2L	9070	genome.wustl.edu	37	8	37978527	37978527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004674.3	+1	validated	p.R342Q	1.000	302	0.7%	318	23%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38196100	38196100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_023034.1	-1	reviewed	p.V234A	0.108	215	0%	146	25.3%	3	0%	benign(0)	tolerated(1)	-	NULL
ASPH	444	genome.wustl.edu	37	8	62563624	62563624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004318.3	-1	reviewed	p.V159I	0.000	173	0%	142	18.3%	6	0%	benign(0.156)	deleterious(0.03)	neutral(0.379)	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452
DNAJC5B	85479	genome.wustl.edu	37	8	66992631	66992631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033105.4	+1	validated	p.G118D	1.000	245	0%	226	35%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_DnaJ_N
ZFHX4	79776	genome.wustl.edu	37	8	77767102	77767102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024721.4	+1	validated	p.V2604M	1.000	131	0%	114	11.4%	0	-	probably_damaging(0.999)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
ZFHX4	79776	genome.wustl.edu	37	8	77768194	77768194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024721.4	+1	validated	p.G2968R	1.000	149	0.7%	126	17.5%	0	-	probably_damaging(0.999)	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
SLC7A13	157724	genome.wustl.edu	37	8	87242284	87242284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_138817.2	-1	validated	p.P75T	0.509	184	0%	195	23.6%	0	-	probably_damaging(0.996)	tolerated(0.27)	deleterious(0.495)	NULL
ODF1	4956	genome.wustl.edu	37	8	103572893	103572893	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024410.3	+1	reviewed	p.P178	0.878	86	0%	79	43%	0	-	-	-	-	superfamily_HSP20_chap
MTBP	27085	genome.wustl.edu	37	8	121473422	121473422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_022045.3	+1	provisional	p.A302T	1.000	194	0%	149	26.2%	0	-	possibly_damaging(0.68)	tolerated(0.08)	deleterious(0.542)	NULL
TEK	7010	genome.wustl.edu	37	9	27180310	27180310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000459.3	+1	reviewed	p.R325H	1.000	116	0%	95	10.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_EGF_2
ACO1	48	genome.wustl.edu	37	9	32436332	32436332	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002197.2	+1	reviewed	p.R728	1.000	281	0%	199	12.1%	13	7.6%	-	-	-	HMMPfam_Aconitase_C,superfamily_Aconitase
NTRK2	4915	genome.wustl.edu	37	9	87325682	87325682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006180.3	+1	reviewed	p.A187S	0.891	352	0%	409	23%	0	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMSmart_LRRCT,superfamily_SSF52058
FAM75C1	441452	genome.wustl.edu	37	9	90535680	90535680	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001145124.1	+1	validated	p.N286	0.001	331	0%	248	24.6%	0	-	-	-	-	NULL
LPAR1	1902	genome.wustl.edu	37	9	113637820	113637820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001401.3	-1	reviewed	p.L326I	1.000	192	0.5%	186	25.8%	7	14.2%	possibly_damaging(0.67)	tolerated(0.17)	neutral(0.296)	superfamily_Family A G protein-coupled receptor-like
CDK9	1025	genome.wustl.edu	37	9	130550241	130550241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001261.3	+1	validated	p.R94H	1.000	82	0%	23	43.5%	40	42.5%	probably_damaging(0.982)	deleterious(0.05)	deleterious(0.772)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ADARB2	105	genome.wustl.edu	37	10	1230837	1230837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018702.2	-1	reviewed	p.H669Q	0.991	43	0%	17	29.4%	0	-	benign(0.05)	tolerated(0.48)	neutral(0.014)	HMMPfam_A_deamin,HMMSmart_ADEAMc
ASB13	79754	genome.wustl.edu	37	10	5691035	5691035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024701.3	-1	reviewed	p.V139I	0.112	310	0%	178	27%	2	50%	benign(0.094)	tolerated(0.4)	neutral(0.023)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PFKFB3	5209	genome.wustl.edu	37	10	6261658	6261658	+	Splice_Site	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004566.3	+1	validated	e7+2	1.000	137	0%	57	28.1%	8	100%	-	-	-	-
SUV39H2	79723	genome.wustl.edu	37	10	14939410	14939410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024670.3	+1	provisional	p.T188I	1.000	234	0%	190	42.6%	0	-	benign(0.014)	tolerated(0.42)	neutral(0.015)	HMMPfam_SET,superfamily_SSF82199
CUBN	8029	genome.wustl.edu	37	10	16918965	16918965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001081.3	-1	reviewed	p.V3013F	0.000	170	0%	202	22.8%	2	0%	benign(0.112)	deleterious(0.04)	neutral(0.358)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FAM13C	220965	genome.wustl.edu	37	10	61011272	61011272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000435852	-1	known	p.S582I	0.000	231	0%	259	21.6%	0	-	unknown(0)	-	-	NULL
RTKN2	219790	genome.wustl.edu	37	10	63999516	63999516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_145307.2	-1	provisional	p.R127C	1.000	99	0%	97	29.9%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC29A3	55315	genome.wustl.edu	37	10	73122123	73122123	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000373189	+1	known	p.C396S	1.000	209	0%	105	24.8%	10	20%	benign(0.214)	deleterious(0)	neutral(0.466)	HMMPfam_Nucleoside_tran
EIF5AL1	143244	genome.wustl.edu	37	10	81272498	81272498	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001099692.1	+1	validated	p.V31	1.000	216	0%	65	20%	31	0%	-	-	-	superfamily_Transl_SH3_like
PTEN	5728	genome.wustl.edu	37	10	89653800	89653800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000371953	+1	known	p.I33S	1.000	288	0%	237	18.1%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MUC5B	727897	genome.wustl.edu	37	11	1267071	1267071	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002458.1	+1	validated	p.P2990	0.000	79	0%	40	27.5%	19	31.5%	-	-	-	NULL
OR51I2	390064	genome.wustl.edu	37	11	5475124	5475124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001004754.2	+1	validated	p.L136F	0.993	278	0%	302	29.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
OR56B1	387748	genome.wustl.edu	37	11	5757862	5757862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001005180.1	+1	provisional	p.P39H	0.611	191	0%	268	13.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5878417	5878417	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001005168.1	-1	provisional	p.L172	0.316	282	0%	396	26%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MICALCL	84953	genome.wustl.edu	37	11	12315174	12315174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032867.2	+1	validated	p.R66W	0.000	472	0%	265	46.8%	1	0%	possibly_damaging(0.772)	deleterious(0.01)	deleterious(0.693)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33667423	33667423	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_012194.1	+1	validated	p.A1576	0.000	85	0%	80	10%	0	-	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47317560	47317563	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	TGTC	TGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003682.3	+1	reviewed	p.S1239fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000205035	0	genome.wustl.edu	37	11	49805528	49805528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000357667	+1	known	p.R271Q	1.000	112	0%	141	9.9%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RBM4	5936	genome.wustl.edu	37	11	66410998	66410998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002896.2	+1	validated	p.R164W	1.000	98	0%	85	12.9%	54	12.9%	-	-	-	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RNA-binding domain RBD
C11orf80	79703	genome.wustl.edu	37	11	66555709	66555709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024650.3	+1	validated	p.T201I	0.028	136	0%	111	11.7%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71725245	71725245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006185.2	-1	validated	p.A1102T	0.013	133	0%	51	15.7%	36	11.1%	benign(0.003)	tolerated(0.33)	neutral(0.024)	NULL
ENSG00000214391	0	genome.wustl.edu	37	11	90017063	90017063	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000318973	+1	known	p.G404	0.979	445	0%	488	16.6%	367	0%	-	-	-	superfamily_Tub_FtsZ_C
JRKL	8690	genome.wustl.edu	37	11	96125267	96125267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003772.3	+1	reviewed	p.T485I	1.000	96	0%	141	10.6%	5	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
PAFAH1B2	5049	genome.wustl.edu	37	11	117031951	117031951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002572.3	+1	validated	p.G88R	1.000	173	0%	156	25%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
SLC37A2	219855	genome.wustl.edu	37	11	124954132	124954132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_198277.2	+1	validated	p.G348S	1.000	67	0%	23	17.4%	2	0%	possibly_damaging(0.838)	deleterious(0.03)	deleterious(0.684)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IGSF9B	22997	genome.wustl.edu	37	11	133789766	133789766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014987.1	-1	validated	p.P1285H	0.990	32	0%	13	38.5%	0	-	unknown(0)	deleterious(0)	-	NULL
B3GAT1	27087	genome.wustl.edu	37	11	134251882	134251882	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018644.3	-1	reviewed	p.L319	1.000	130	0%	77	10.4%	2	50%	-	-	-	superfamily_SSF53448
NTF3	4908	genome.wustl.edu	37	12	5603685	5603685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001102654.1	+1	reviewed	p.P115L	1.000	102	0%	67	35.8%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
PEX5	5830	genome.wustl.edu	37	12	7360633	7360633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001131023.1	+1	reviewed	p.A395T	1.000	130	0%	70	15.7%	17	11.7%	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
SLCO1C1	53919	genome.wustl.edu	37	12	20854375	20854375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017435.4	+1	reviewed	p.D85N	1.000	180	0%	185	41.6%	0	-	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
ST8SIA1	6489	genome.wustl.edu	37	12	22487019	22487019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003034.3	-1	reviewed	p.R50W	1.000	105	0%	68	13.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	G	rs121913529	byCluster	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033360.2	-1	reviewed	p.G12A	1.000	108	0%	39	46.2%	0	-	possibly_damaging(0.434)	deleterious(0.03)	deleterious(0.506)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
AMN1	196394	genome.wustl.edu	37	12	31824712	31824713	+	RNA	INS	-	-	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NR_004854.1	-1	validated	NULL	0.003:0.002	-	-	-	-	-	-	-	-	-	-
ATF1	466	genome.wustl.edu	37	12	51189728	51189728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005171.3	+1	validated	p.S44A	1.000	154	0%	111	27%	4	0%	possibly_damaging(0.74)	tolerated(0.34)	neutral(0.294)	HMMPfam_pKID
NEUROD4	58158	genome.wustl.edu	37	12	55420617	55420617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_021191.2	+1	validated	p.A132T	1.000	411	0.2%	331	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
LIN7A	8825	genome.wustl.edu	37	12	81205384	81205384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004664.2	-1	validated	p.Y188H	1.000	123	0%	95	11.6%	3	0%	possibly_damaging(0.756)	tolerated(0.1)	deleterious(0.566)	HMMSmart_SM00228,superfamily_PDZ domain-like
PRDM4	11108	genome.wustl.edu	37	12	108133180	108133180	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_012406.3	-1	reviewed	p.Q691	1.000	140	0%	117	22.2%	7	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TRPV4	59341	genome.wustl.edu	37	12	110252294	110252294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_021625.4	-1	reviewed	p.P103H	1.000	100	0%	52	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAA25	80018	genome.wustl.edu	37	12	112528532	112528532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_024953.3	-1	reviewed	p.R94Q	1.000	158	0%	99	29.3%	0	-	benign(0.006)	tolerated(1)	-	superfamily_TPR-like
ZCCHC8	55596	genome.wustl.edu	37	12	122983408	122983408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017612.2	-1	validated	p.L70F	1.000	90	0%	44	13.6%	3	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
HCAR2	338442	genome.wustl.edu	37	12	123186783	123186783	+	Missense_Mutation	SNP	C	C	A	rs148160325	by1000genomes	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_177551.3	-1	validated	p.G350C	0.000	188	0%	117	29.1%	1	0%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SACS	26278	genome.wustl.edu	37	13	23909873	23909873	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014363.4	-1	reviewed	p.S2714	0.814	170	0%	129	12.4%	0	-	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
DOCK9	23348	genome.wustl.edu	37	13	99582472	99582472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001130049.1	-1	validated	p.T96A	0.991	63	0%	50	12%	0	-	possibly_damaging(0.657)	deleterious(0.01)	deleterious(0.637)	NULL
HOMEZ	57594	genome.wustl.edu	37	14	23744827	23744829	+	In_Frame_Del	DEL	TCC	TCC	-	rs67447855	byCluster	TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020834.2	-1	validated	p.E537in_frame_del	0.112:0.064:0.005	-	-	-	-	-	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33014831	33014831	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_004274.4	+1	reviewed	p.G324	0.000	210	0%	221	19%	0	-	-	-	-	NULL
FBXO33	254170	genome.wustl.edu	37	14	39870664	39870664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_203301.2	-1	validated	p.R371Q	1.000	161	0%	241	27%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
NAA30	122830	genome.wustl.edu	37	14	57858370	57858370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001011713.2	+1	validated	p.T232N	1.000	321	0%	192	16.7%	0	-	possibly_damaging(0.903)	tolerated(0.08)	deleterious(0.658)	superfamily_Acyl-CoA N-acyltransferases (Nat)
FNTB	2342	genome.wustl.edu	37	14	65499352	65499352	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002028.3	+1	validated	p.V210	0.634	120	0%	76	28.9%	8	25%	-	-	-	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
COQ6	51004	genome.wustl.edu	37	14	74428567	74428567	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_182476.1	+1	validated	p.T446	0.004	437	0%	260	11.5%	60	13.3%	-	-	-	superfamily_SSF51905
TMED10	10972	genome.wustl.edu	37	14	75643254	75643254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006827.5	-1	reviewed	p.R10L	0.000	89	0%	79	40.5%	188	45.7%	unknown(0)	tolerated(0.08)	-	NULL
SERPINA3	12	genome.wustl.edu	37	14	95080991	95080991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001085.4	+1	reviewed	p.K71N	0.986	249	0.4%	126	10.3%	690	6.8%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
IGHV1OR15-9	390531	genome.wustl.edu	37	15	20169942	20169942	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000338912	-1	known	p.T110	0.991	613	0%	481	23.7%	0	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
CHRNA7	1139	genome.wustl.edu	37	15	32450664	32450664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000746.3	+1	reviewed	p.Y217C	1.000	356	0%	204	15.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
THBS1	7057	genome.wustl.edu	37	15	39880845	39880845	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003246.2	+1	reviewed	p.D530	1.000	84	0%	53	17%	4	50%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
BMF	90427	genome.wustl.edu	37	15	40398273	40398274	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001003940.1	-1	reviewed	p.Q5fs	0.998:0.994	-	-	-	-	-	-	-	-	-	NULL
MYEF2	50804	genome.wustl.edu	37	15	48451055	48451055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_016132.3	-1	validated	p.R261Q	1.000	290	0%	331	10%	3	33.3%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TLN2	83660	genome.wustl.edu	37	15	63053959	63053959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015059.2	+1	reviewed	p.N1573S	1.000	557	0%	381	15.5%	1	100%	benign(0.007)	tolerated(0.39)	neutral(0.016)	NULL
SPG21	51324	genome.wustl.edu	37	15	65266978	65266978	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001127889.1	-1	reviewed	p.S138	1.000	182	0%	146	10.3%	27	11.1%	-	-	-	superfamily_SSF53474
CHRNB4	1143	genome.wustl.edu	37	15	78921975	78921975	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000750.3	-1	validated	p.Y224	0.575	350	0%	200	30.5%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
AKAP13	11214	genome.wustl.edu	37	15	86198870	86198870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006738.4	+1	reviewed	p.V1533M	0.000	132	0%	131	19.1%	1	0%	benign(0)	tolerated(1)	-	NULL
FES	2242	genome.wustl.edu	37	15	91430453	91430453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002005.3	+1	reviewed	p.R174H	1.000	70	0%	26	30.8%	8	12.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
AXIN1	8312	genome.wustl.edu	37	16	364582	364582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003502.2	-1	reviewed	p.S327F	1.000	27	0%	20	35%	29	24.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MKL2	57496	genome.wustl.edu	37	16	14312792	14312792	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014048.3	+1	validated	p.A210	0.201	104	0%	108	28.7%	1	0%	-	-	-	NULL
DCTN5	84516	genome.wustl.edu	37	16	23669844	23669844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032486.2	+1	provisional	p.D45G	1.000	113	0%	109	25.7%	15	40%	benign(0.001)	tolerated(0.8)	neutral(0.001)	HMMPfam_Hexapep,superfamily_Trimeric LpxA-like enzymes
ASPHD1	253982	genome.wustl.edu	37	16	29912911	29912911	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_181718.3	+1	validated	p.R207G	0.999	59	0%	55	45.5%	10	50%	probably_damaging(0.964)	tolerated(0.07)	deleterious(0.726)	NULL
AMFR	267	genome.wustl.edu	37	16	56396410	56396410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000314566	-1	known	p.P202L	0.000	79	0%	28	35.7%	77	44.1%	unknown(0)	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81211574	81211574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001076780.1	-1	reviewed	p.A759T	0.769	127	0%	46	28.3%	0	-	possibly_damaging(0.664)	tolerated(0.18)	neutral(0.291)	NULL
NUP88	4927	genome.wustl.edu	37	17	5290925	5290925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002532.3	-1	reviewed	p.R612M	1.000	510	0%	401	22.9%	14	14.2%	possibly_damaging(0.89)	deleterious(0.03)	deleterious(0.714)	HMMPfam_Nup88
DNAH2	146754	genome.wustl.edu	37	17	7661890	7661890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020877.2	+1	validated	p.P710Q	1.000	331	0%	197	24.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_DHC_N1
CHD3	1107	genome.wustl.edu	37	17	7804674	7804674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001005271.2	+1	reviewed	p.R1137Q	1.000	311	0%	84	9.5%	14	7.1%	probably_damaging(1)	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ALOX12B	242	genome.wustl.edu	37	17	7976236	7976236	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001139.2	-1	reviewed	p.F653	0.966	55	0%	38	44.7%	1	100%	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
PHF12	57649	genome.wustl.edu	37	17	27237327	27237327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001033561.1	-1	validated	p.H759R	1.000	94	0%	33	18.2%	19	5.2%	benign(0.392)	deleterious(0.05)	deleterious(0.471)	NULL
SLFN5	162394	genome.wustl.edu	37	17	33586417	33586417	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_144975.3	+1	validated	p.C236*	0.135	244	0%	223	10.3%	3	0%	-	-	-	HMMPfam_AAA_4
PSMD3	5709	genome.wustl.edu	37	17	38140673	38140673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002809.2	+1	reviewed	p.A116V	1.000	209	0%	101	10.9%	43	13.9%	benign(0)	tolerated(1)	-	superfamily_TPR-like
KRT40	125115	genome.wustl.edu	37	17	39138606	39138606	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_182497.3	-1	reviewed	p.E214*	1.000	336	0.3%	214	29.4%	0	-	-	-	-	HMMPfam_Filament
AOC3	8639	genome.wustl.edu	37	17	41004380	41004380	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_003734.2	+1	reviewed	p.G340	0.903	177	0%	51	25.5%	0	-	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase
KIF2B	84643	genome.wustl.edu	37	17	51900732	51900732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_032559.4	+1	validated	p.T113M	0.003	181	0%	159	41.5%	0	-	possibly_damaging(0.668)	tolerated(0.05)	deleterious(0.582)	NULL
STRADA	92335	genome.wustl.edu	37	17	61788129	61788129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001003787.2	-1	reviewed	p.A139V	1.000	100	0%	43	14%	8	0%	possibly_damaging(0.458)	tolerated(0.58)	neutral(0.155)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ABCA5	23461	genome.wustl.edu	37	17	67256522	67256522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_018672.3	-1	reviewed	p.D1199G	0.002	78	0%	94	21.3%	3	33.3%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
TBCD	6904	genome.wustl.edu	37	17	80887019	80887019	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005993.4	+1	reviewed	p.Q908	1.000	71	0%	17	23.5%	128	17.1%	-	-	-	superfamily_ARM repeat
SOGA2	23255	genome.wustl.edu	37	18	8798142	8798142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_015210.3	+1	predicted	p.Q763H	0.012	66	0%	35	31.4%	1	100%	possibly_damaging(0.63)	tolerated(0.06)	deleterious(0.542)	NULL
GATA6	2627	genome.wustl.edu	37	18	19761478	19761478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005257.3	+1	validated	p.R456H	1.000	177	0%	75	12%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TCEB3C	162699	genome.wustl.edu	37	18	44554841	44554841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_145653.3	-1	reviewed	p.T458M	0.003	711	0%	203	7.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARID3A	1820	genome.wustl.edu	37	19	971939	971939	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_005224.2	+1	reviewed	p.G552	0.000	25	0%	17	29.4%	10	10%	-	-	-	NULL
TICAM1	148022	genome.wustl.edu	37	19	4817187	4817187	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_182919.2	-1	validated	p.H401	0.898	38	0%	20	40%	17	17.6%	-	-	-	NULL
CAMSAP3	57662	genome.wustl.edu	37	19	7682325	7682325	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001080429.2	+1	validated	e17+1	1.000	71	0%	26	38.5%	19	100%	-	-	-	-
MAN2B1	4125	genome.wustl.edu	37	19	12775706	12775706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000528.3	-1	reviewed	p.R177H	0.997	42	0%	21	23.8%	19	15.7%	possibly_damaging(0.672)	deleterious(0.03)	deleterious(0.603)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
OR7C1	26664	genome.wustl.edu	37	19	14910565	14910565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_198944.1	-1	validated	p.H128Q	0.997	221	0%	258	24.4%	1	0%	benign(0.167)	deleterious(0.03)	neutral(0.380)	HMMPfam_7tm_1,superfamily_SSF81321
OR7A5	26659	genome.wustl.edu	37	19	14938239	14938239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_017506.1	-1	validated	p.A272V	0.001	233	0%	278	23%	0	-	benign(0.033)	tolerated(0.14)	neutral(0.251)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYP4F2	8529	genome.wustl.edu	37	19	15996791	15996791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001082.3	-1	reviewed	p.R353L	0.979	437	0%	412	13.6%	0	-	benign(0.117)	deleterious(0.02)	neutral(0.393)	HMMPfam_p450,superfamily_Cytochrome_P450
RPL18A	6142	genome.wustl.edu	37	19	17972156	17972156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000980.2	+1	reviewed	p.P25T	0.963	71	0%	32	15.6%	1622	15.9%	benign(0.011)	tolerated(0.12)	neutral(0.261)	HMMPfam_Ribosomal_L18ae
ZNF99	7652	genome.wustl.edu	37	19	22939548	22939548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001080409.1	-1	provisional	p.L875I	0.012	353	0%	462	36.8%	0	-	possibly_damaging(0.686)	deleterious(0.02)	deleterious(0.628)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF536	9745	genome.wustl.edu	37	19	30935555	30935555	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014717.1	+1	provisional	p.G362	1.000	182	0%	76	25%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SUPT5H	6829	genome.wustl.edu	37	19	39955497	39955497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001111020.2	+1	validated	p.E228D	1.000	127	0%	51	17.6%	29	17.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Supt5,HMMSmart_SM00738
SUPT5H	6829	genome.wustl.edu	37	19	39964917	39964917	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001111020.2	+1	validated	p.Q899*	1.000	229	0%	80	17.5%	127	1.5%	-	-	-	NULL
EID2B	126272	genome.wustl.edu	37	19	40023166	40023166	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_152361.1	-1	provisional	p.Q93*	0.082	72	0%	19	21.1%	2	0%	-	-	-	NULL
LGALS14	56891	genome.wustl.edu	37	19	40199856	40199856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_203471.1	+1	reviewed	p.R137L	0.000	231	0%	202	25.7%	0	-	benign(0.183)	tolerated(0.68)	neutral(0.019)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
CEACAM1	634	genome.wustl.edu	37	19	43031328	43031328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001712.4	-1	reviewed	p.G97S	0.000	492	0%	241	26.1%	10	10%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GYS1	2997	genome.wustl.edu	37	19	49490525	49490525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002103.4	-1	reviewed	p.G140R	1.000	41	0%	33	39.4%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Glycogen_syn
FCGRT	2217	genome.wustl.edu	37	19	50027783	50027783	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001136019.2	+1	reviewed	p.L207	1.000	120	0%	45	15.6%	299	15.3%	-	-	-	HMMPfam_C1-set,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51920389	51920389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_033130.4	-1	validated	p.G123E	0.172	213	0%	138	15.9%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF616	90317	genome.wustl.edu	37	19	52619607	52619607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_178523.3	-1	validated	p.I270M	0.001	179	0%	286	20.6%	0	-	possibly_damaging(0.632)	deleterious(0.01)	deleterious(0.627)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52715982	52715982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014225.5	+1	reviewed	p.R183W	1.000	114	0.9%	63	36.5%	49	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
PPP2R1A	5518	genome.wustl.edu	37	19	52719118	52719118	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014225.5	+1	reviewed	p.V298	1.000	99	0%	43	44.2%	89	5.6%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
ZNF611	81856	genome.wustl.edu	37	19	53208439	53208439	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_030972.3	-1	validated	p.K623	0.019	815	0.1%	723	24.9%	4	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SIGLEC1	6614	genome.wustl.edu	37	20	3683945	3683945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_023068.3	-1	reviewed	p.R376Q	0.010	83	0%	42	11.9%	3	0%	benign(0.001)	tolerated(0.95)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NAA20	51126	genome.wustl.edu	37	20	20007509	20007509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_016100.3	+1	validated	p.R84Q	1.000	452	0.4%	381	24.7%	45	8.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
BPIFA1	51297	genome.wustl.edu	37	20	31829255	31829255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_016583.3	+1	reviewed	p.P216S	0.320	778	0%	568	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
SRSF6	6431	genome.wustl.edu	37	20	42089232	42089232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006275.5	+1	reviewed	p.R223H	1.000	148	0%	156	14.1%	130	13.8%	unknown(0)	tolerated(0.19)	-	NULL
TP53TG5	27296	genome.wustl.edu	37	20	44004010	44004010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_014477.2	-1	validated	p.A146V	0.000	305	0%	159	18.2%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
CASS4	57091	genome.wustl.edu	37	20	55012496	55012496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_020356.3	+1	validated	p.R105C	0.000	163	0%	84	10.7%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
GMEB2	26205	genome.wustl.edu	37	20	62236138	62236138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_012384.3	-1	reviewed	p.A63T	0.853	39	0%	29	17.2%	1	0%	possibly_damaging(0.896)	tolerated(0.1)	deleterious(0.640)	NULL
USP41	373856	genome.wustl.edu	37	22	20717917	20717917	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000292729	-1	known	p.T305I	0.995	74	0%	38	18.4%	3	0%	-	-	-	NULL
ADORA2A	135	genome.wustl.edu	37	22	24836838	24836838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000675.4	+1	reviewed	p.Q207R	1.000	183	0.5%	65	29.2%	3	0%	possibly_damaging(0.732)	deleterious(0.04)	deleterious(0.617)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYH9	4627	genome.wustl.edu	37	22	36694974	36694974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_002473.4	-1	reviewed	p.D1031Y	1.000	87	0%	34	44.1%	34	32.3%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	superfamily_Prefoldin
IFT27	11020	genome.wustl.edu	37	22	37154365	37154365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_006860.3	-1	reviewed	p.A183V	0.002	158	0%	47	25.5%	70	27.1%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	1202	1202	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000389680	+1	known	NULL	NULL	30	0%	24	25%	1024	16.9%	-	-	-	-
KAL1	3730	genome.wustl.edu	37	X	8502453	8502453	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000216.2	-1	reviewed	p.R631*	0.881	49	0%	47	53.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
BCOR	54880	genome.wustl.edu	37	X	39932117	39932117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001123385.1	-1	reviewed	p.A828T	0.009	111	0%	41	22%	5	0%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
CFP	5199	genome.wustl.edu	37	X	47485775	47485775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001145252.1	-1	reviewed	p.G362W	0.662	95	0%	26	19.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SSX4B	548313	genome.wustl.edu	37	X	48269478	48269478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001034832.2	-1	reviewed	p.R75W	0.000	385	0%	313	5.4%	0	-	benign(0.041)	deleterious(0)	neutral(0.447)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
WAS	7454	genome.wustl.edu	37	X	48542343	48542343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000377.2	+1	reviewed	p.R34Q	0.559	385	0%	212	17.9%	3	0%	benign(0.172)	tolerated(0.62)	neutral(0.019)	superfamily_SSF50729
IQSEC2	23096	genome.wustl.edu	37	X	53284062	53284062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_001111125.1	-1	validated	p.A351T	1.000	44	0%	21	19%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63406010	63406010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	ENST00000374869	-1	known	p.C801Y	0.100	230	0%	129	20.2%	7	0%	unknown(0)	-	-	NULL
OCRL	4952	genome.wustl.edu	37	X	128723866	128723866	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K6-01A-11W-A062-09	TCGA-B5-A0K6-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6561bfbc-7b1d-4620-a140-802bb24bbc5c	a3af2ff9-83b0-4dbb-83ca-2545f3771e30	NM_000276.3	+1	reviewed	p.Y838	1.000	531	0%	320	38.8%	4	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
