Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CSMD2	114784	genome.wustl.edu	37	1	34238322	34238322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_052896.3	-1	validated	p.G525D	1.000	176	0%	74	45.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TIE1	7075	genome.wustl.edu	37	1	43774787	43774787	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_005424.2	+1	provisional	p.D391	0.154	63	0%	37	37.8%	6	0%	-	-	-	HMMPfam_ig,superfamily_SSF48726
ZZZ3	26009	genome.wustl.edu	37	1	78045210	78045210	+	Splice_Site	SNP	A	A	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_015534.4	-1	provisional	e6+2	0.998	352	0%	277	46.2%	1	100%	-	-	-	-
PTGFRN	5738	genome.wustl.edu	37	1	117509898	117509898	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_020440.2	+1	provisional	p.R669*	1.000	73	0%	46	60.9%	6	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
C1orf116	79098	genome.wustl.edu	37	1	207200840	207200840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_023938.5	-1	validated	p.S35F	1.000	137	0%	119	16.8%	0	-	probably_damaging(0.991)	tolerated(0.56)	neutral(0.451)	NULL
LOC642587	642587	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001104548.1	+1	validated	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
OR2M3	127062	genome.wustl.edu	37	1	248367063	248367063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001004689.1	+1	provisional	p.E232K	0.534	865	0%	451	24.6%	0	-	benign(0.09)	tolerated(0.24)	neutral(0.044)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC440917	440917	genome.wustl.edu	37	2	139046423	139046423	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	XR_041289.2	-1	model	NULL	0.268	123	0%	35	25.7%	0	-	-	-	-	-
CACNB4	785	genome.wustl.edu	37	2	152695794	152695794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_000726.3	-1	reviewed	p.R468W	1.000	302	0%	135	57%	0	-	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	NULL
C2orf62	375307	genome.wustl.edu	37	2	219227557	219227557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_198559.1	+1	predicted	p.R188W	0.135	125	0%	45	42.2%	15	60%	possibly_damaging(0.938)	deleterious(0.02)	deleterious(0.766)	NULL
ANO10	55129	genome.wustl.edu	37	3	43474163	43474163	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000448045	-1	known	p.G146D	0.067	258	0%	181	33.1%	54	25.9%	-	-	-	HMMPfam_DUF590
FLNB	2317	genome.wustl.edu	37	3	58094205	58094206	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001457.3	+1	reviewed	p.L654fs	0.749:0.893	-	-	-	-	-	-	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
PLCH1	23007	genome.wustl.edu	37	3	155301343	155301343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001130960.1	-1	validated	p.Y218fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
IFT80	57560	genome.wustl.edu	37	3	160025564	160025576	+	Frame_Shift_Del	DEL	ACGAACCTAAACA	ACGAACCTAAACA	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	ACGAACCTAAACA	ACGAACCTAAACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_020800.1	-1	validated	p.V320fs	0.908:0.994:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Cyt_cd1_haem_C
TRIM59	286827	genome.wustl.edu	37	3	160156108	160156110	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_173084.2	-1	validated	p.E288in_frame_del	0.953:0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_006218.2	+1	reviewed	p.M1043V	1.000	244	0%	153	61.4%	6	16.6%	benign(0.123)	deleterious(0.01)	neutral(0.416)	HMMSmart_PI3Kc,superfamily_Kinase_like
LRRC33	375387	genome.wustl.edu	37	3	196388517	196388517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_198565.1	+1	provisional	p.T668S	0.003	48	0%	44	13.6%	10	10%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10445029	10445029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_053042.2	-1	validated	p.L975S	0.826	377	0%	152	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRP72	6731	genome.wustl.edu	37	4	57340516	57340516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_006947.3	+1	validated	p.G190D	1.000	155	0%	55	41.8%	4	0%	possibly_damaging(0.582)	deleterious(0.01)	deleterious(0.606)	HMMPfam_TPR_1,superfamily_SSF48452
MAML3	55534	genome.wustl.edu	37	4	140811064	140811075	+	Frame_Shift_Del	DEL	TGCTGCTGCTGC	TGCTGCTGCTGC	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	TGCTGCTGCTGC	TGCTGCTGCTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000398940	-1	known	p.Q37fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56176590	56176591	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_005921.1	+1	validated	p.G715fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65319180	65319180	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_018695.2	+1	reviewed	p.T220	1.000	159	0%	221	38.5%	3	100%	-	-	-	superfamily_SSF52058
PIK3R1	5295	genome.wustl.edu	37	5	67591149	67591151	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	TGA	TGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_181523.1	+1	reviewed	p.M582in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SLC25A46	91137	genome.wustl.edu	37	5	110077760	110077760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_138773.1	+1	provisional	p.R99K	1.000	86	0%	246	37.4%	2	50%	probably_damaging(0.988)	tolerated(0.79)	neutral(0.439)	superfamily_Mitochondrial carrier
MAPK9	5601	genome.wustl.edu	37	5	179665378	179665378	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_002752.4	-1	reviewed	p.D362	0.997	460	0%	360	43.1%	13	38.4%	-	-	-	superfamily_Protein kinase-like (PK-like)
POM121L12	285877	genome.wustl.edu	37	7	53103790	53103790	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_182595.3	+1	validated	p.A142	0.000	5	0.000	11	0.545	0	-	-	-	-	NULL
TSPAN12	23554	genome.wustl.edu	37	7	120450582	120450582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_012338.3	-1	reviewed	p.M135V	1.000	353	0%	156	44.2%	1	0%	benign(0.15)	deleterious(0.03)	neutral(0.378)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
PDLIM2	64236	genome.wustl.edu	37	8	22438946	22438946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_176871.2	+1	validated	p.V50M	0.993	58	0%	88	39.8%	2	50%	benign(0.123)	tolerated(0.1)	neutral(0.296)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SNTG1	54212	genome.wustl.edu	37	8	51465702	51465702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_018967.2	+1	reviewed	p.A258V	1.000	235	0%	127	44.1%	0	-	possibly_damaging(0.681)	tolerated(0.52)	neutral(0.252)	HMMSmart_SM00233,superfamily_PH domain-like
SOX17	64321	genome.wustl.edu	37	8	55370985	55370985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_022454.3	+1	reviewed	p.A96G	1.000	5	0.000	13	0.385	81	32%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SLCO5A1	81796	genome.wustl.edu	37	8	70744342	70744342	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_030958.2	-1	reviewed	p.G189	0.000	54	0%	27	18.5%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
KIAA0368	23392	genome.wustl.edu	37	9	114151885	114151885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001080398.1	-1	provisional	p.R1311Q	1.000	126	0%	55	40%	15	0%	possibly_damaging(0.522)	tolerated(1)	neutral(0.176)	superfamily_ARM repeat
PARG	8505	genome.wustl.edu	37	10	51051656	51051656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_003631.2	-1	reviewed	p.Y792*	1.000	452	0%	171	45%	2	0%	-	-	-	HMMPfam_PARG_cat
CTNNA3	29119	genome.wustl.edu	37	10	67680276	67680276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001127384.1	-1	validated	p.R834*	1.000	194	0%	104	43.3%	0	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SAR1A	56681	genome.wustl.edu	37	10	71912281	71912281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001142648.1	-1	validated	p.R183T	1.000	214	0%	93	49.5%	39	30.7%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMSmart_SM00178,PatternScan_SAR1,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTEN	5728	genome.wustl.edu	37	10	89720657	89720661	+	Frame_Shift_Del	DEL	ATGTT	ATGTT	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	ATGTT	ATGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000371953	+1	known	p.M270fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ABCC2	1244	genome.wustl.edu	37	10	101591439	101591439	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_000392.3	+1	reviewed	p.A985	0.002	385	0%	148	35.8%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
RASGRP2	10235	genome.wustl.edu	37	11	64508416	64508416	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000377486	-1	known	p.C125	1.000	101	0%	58	46.6%	0	-	-	-	-	HMMSmart_RasGEFN
AASDHPPT	60496	genome.wustl.edu	37	11	105962057	105962057	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_015423.2	+1	reviewed	p.S182R	1.000	245	0%	220	34.5%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ACPS,superfamily_4-PPT_transf
APOLD1	81575	genome.wustl.edu	37	12	12940417	12940417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001130415.1	+1	validated	p.A224V	0.989	68	0%	79	65.8%	0	-	possibly_damaging(0.915)	tolerated(0.43)	neutral(0.380)	NULL
PLEKHA5	54477	genome.wustl.edu	37	12	19427617	19427624	+	Frame_Shift_Del	DEL	ATGGTCAA	ATGGTCAA	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	ATGGTCAA	ATGGTCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_019012.3	+1	validated	p.D332fs	1.000:0.997:1.000:1.000:1.000:1.000:0.999:0.979	-	-	-	-	-	-	-	-	-	NULL
TWF1	5756	genome.wustl.edu	37	12	44193224	44193224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_002822.3	-1	reviewed	p.L188V	1.000	294	0%	233	28.8%	22	9%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
ARID2	196528	genome.wustl.edu	37	12	46246441	46246451	+	Frame_Shift_Del	DEL	GCAAAACTGTA	GCAAAACTGTA	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	GCAAAACTGTA	GCAAAACTGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_152641.2	+1	validated	p.C1512fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.983:0.738	-	-	-	-	-	-	-	-	-	NULL
IFT81	28981	genome.wustl.edu	37	12	110600778	110600778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001143779.1	+1	validated	p.K366E	0.995	204	0%	259	31.7%	19	31.5%	benign(0.389)	tolerated(0.29)	neutral(0.153)	NULL
TMED2	10959	genome.wustl.edu	37	12	124081218	124081223	+	In_Frame_Del	DEL	TGACAT	TGACAT	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	TGACAT	TGACAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_006815.3	+1	validated	p.TL184in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_EMP24_GP25L
DCT	1638	genome.wustl.edu	37	13	95121167	95121167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001129889.1	-1	validated	p.G143A	0.203	267	0%	120	40%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	superfamily_Di-copper_centre
CMTM5	116173	genome.wustl.edu	37	14	23848246	23848246	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_138460.2	+1	reviewed	p.L96	1.000	438	0.2%	160	51.9%	0	-	-	-	-	HMMPfam_MARVEL
POLE2	5427	genome.wustl.edu	37	14	50121527	50121531	+	Frame_Shift_Del	DEL	ATATT	ATATT	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	ATATT	ATATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_002692.2	-1	provisional	p.I348fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DNA_pol_E_B
C14orf183	196913	genome.wustl.edu	37	14	50550482	50550482	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001014830.1	-1	provisional	p.Q288*	0.000	44	0%	36	44.4%	0	-	-	-	-	NULL
MTA1	9112	genome.wustl.edu	37	14	105905013	105905013	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_004689.3	+1	reviewed	p.Y11	0.995	230	0%	88	54.5%	3	33.3%	unknown(0)	-	-	HMMPfam_BAH,HMMSmart_SM00439
IGHG4	3503	genome.wustl.edu	37	14	106091456	106091456	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000390543	-1	known	p.V146	0.048	541	0%	134	38.1%	0	-	-	-	-	HMMPfam_C1-set,superfamily_SSF48726
PAK6	56924	genome.wustl.edu	37	15	40564624	40564624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001128628.1	+1	reviewed	p.R353H	1.000	63	0%	46	47.8%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814131	43814131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_002373.5	+1	reviewed	p.R154C	1.000	164	0%	72	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UACA	55075	genome.wustl.edu	37	15	70960070	70960070	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_018003.2	-1	validated	p.Y985D	1.000	732	0%	356	43.5%	24	37.5%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84592756	84592756	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_207517.2	+1	validated	p.Q696	0.976	255	0%	104	46.2%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ALPK3	57538	genome.wustl.edu	37	15	85406049	85406049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_020778.4	+1	validated	p.S1640L	1.000	287	0.3%	130	46.9%	1	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
C16orf70	80262	genome.wustl.edu	37	16	67179309	67179309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_025187.3	+1	provisional	p.T346M	1.000	156	0%	46	28.3%	12	25%	possibly_damaging(0.902)	deleterious(0.03)	deleterious(0.722)	HMMPfam_UPF0183
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001114974.1	+1	validated	e3+1	0.999	79	0%	24	33.3%	0	-	-	-	-	-
BCL6B	255877	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_181844.3	+1	validated	p.238in_frame_insS	0.939:0.528	-	-	-	-	-	-	-	-	-	NULL
DVL2	1856	genome.wustl.edu	37	17	7129210	7129210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_004422.2	-1	reviewed	p.S729C	1.000	63	0%	35	54.3%	11	54.5%	unknown(0)	tolerated(1)	-	NULL
MYH13	8735	genome.wustl.edu	37	17	10247166	10247166	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_003802.2	-1	validated	p.S615	0.000	354	0%	179	43.6%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10312471	10312471	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_002472.2	-1	reviewed	p.A636	0.808	136	0%	78	41%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
SHISA6	388336	genome.wustl.edu	37	17	11461403	11461403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_207386.3	+1	validated	p.V480I	1.000	39	0%	35	51.4%	0	-	possibly_damaging(0.946)	tolerated(0.39)	neutral(0.406)	NULL
ATP6V0A1	535	genome.wustl.edu	37	17	40622193	40622199	+	Frame_Shift_Del	DEL	AATTAAA	AATTAAA	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	AATTAAA	AATTAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001130020.1	+1	reviewed	p.E127fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_V_ATPase_I
EFTUD2	9343	genome.wustl.edu	37	17	42940144	42940144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_004247.3	-1	validated	p.T515I	1.000	173	0%	57	29.8%	9	22.2%	possibly_damaging(0.82)	deleterious(0)	deleterious(0.755)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
AFMID	125061	genome.wustl.edu	37	17	76201707	76201707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001145526.1	+1	validated	p.P223L	0.999	152	0%	56	16.1%	8	12.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_alpha/beta-Hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76464956	76464956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000389840	-1	known	p.A2827T	0.750	194	0%	88	45.5%	0	-	benign(0.087)	tolerated(0.16)	neutral(0.066)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNMT1	1786	genome.wustl.edu	37	19	10257086	10257086	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001130823.1	-1	reviewed	p.N945	0.229	106	0%	56	48.2%	15	40%	-	-	-	NULL
MAP1S	55201	genome.wustl.edu	37	19	17838512	17838512	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_018174.4	+1	validated	p.R773	0.048	14	0%	15	26.7%	28	21.4%	-	-	-	NULL
LILRB2	10288	genome.wustl.edu	37	19	54783380	54783382	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_005874.3	-1	reviewed	p.G159in_frame_del	0.000:0.000:0.001	-	-	-	-	-	-	-	-	-	HMMPfam_ig,superfamily_Immunoglobulin
SLC24A3	57419	genome.wustl.edu	37	20	19698233	19698233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_020689.3	+1	validated	p.V594G	1.000	372	0%	226	32.3%	0	-	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	HMMPfam_Na_Ca_ex
ASXL1	171023	genome.wustl.edu	37	20	31022391	31022400	+	Frame_Shift_Del	DEL	GGGGCGAGAG	GGGGCGAGAG	-	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	GGGGCGAGAG	GGGGCGAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_015338.5	+1	reviewed	p.G626fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58486876	58486876	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_014258.2	-1	reviewed	p.L301V	1.000	92	0%	174	32.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CDH4	1002	genome.wustl.edu	37	20	60427933	60427933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001794.2	+1	reviewed	p.V286M	1.000	211	0%	101	63.4%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Cadherin,superfamily_Cadherin
YTHDF1	54915	genome.wustl.edu	37	20	61834673	61834673	+	Missense_Mutation	SNP	C	C	T	rs187686193	by1000genomes	TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_017798.3	-1	validated	p.V207I	0.997	71	0%	29	34.5%	11	36.3%	benign(0.006)	tolerated(0.39)	neutral(0.016)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41516471	41516471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001389.3	-1	validated	p.R1069L	1.000	82	0%	49	49%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LOC100128009	100128009	genome.wustl.edu	37	22	17414886	17414886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	XM_001726296.1	-1	model	p.A148V	0.767	165	0%	82	54.9%	0	-	-	-	-	NULL
ASPHD2	57168	genome.wustl.edu	37	22	26830226	26830226	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_020437.4	+1	validated	p.P215	0.045	177	0%	60	48.3%	1	100%	-	-	-	HMMPfam_Asp_Arg_Hydrox
ELFN2	114794	genome.wustl.edu	37	22	37769461	37769461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_052906.3	-1	validated	p.C705Y	1.000	42	0%	15	66.7%	0	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	1386	1386	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000389680	+1	known	NULL	NULL	12	0.000	9	1.000	802	89.6%	-	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	2607	2607	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	ENST00000387347	+1	known	NULL	NULL	154	0%	66	24.2%	6008	21.6%	-	-	-	-
USP9X	8239	genome.wustl.edu	37	X	40996249	40996249	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_001039590.2	+1	reviewed	p.R210G	1.000	457	0%	175	38.9%	1	100%	possibly_damaging(0.859)	tolerated(0.32)	neutral(0.356)	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56590464	56590464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_013444.3	+1	reviewed	p.S53L	0.998	48	0%	34	35.3%	3	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
SLC16A2	6567	genome.wustl.edu	37	X	73744294	73744294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W1-01A-12D-A10G-09	TCGA-BG-A0W1-10A-01D-A117-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bfe1a50d-640e-45ce-af31-7ab32d818bc9	c29e416b-fcf6-45af-99f6-f9b1c24996a8	NM_006517.3	+1	reviewed	p.R300C	1.000	463	0%	153	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
