Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CROCC	9696	genome.wustl.edu	37	1	17297200	17297200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_014675.3	+1	validated	p.R1908C	1.000	28	0%	55	29.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
FAM159A	348378	genome.wustl.edu	37	1	53122511	53122511	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001042693.1	+1	validated	p.A124	0.000	103	0%	41	41.5%	-	-	-	-	-	NULL
AMPD1	270	genome.wustl.edu	37	1	115220124	115220124	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_000036.2	-1	reviewed	p.A412	0.957	74	0%	81	42%	-	-	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
FAM72A	729533	genome.wustl.edu	37	1	206141509	206141509	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001123168.1	+1	predicted	p.I72	0.949	742	0%	739	13.1%	-	-	-	-	-	NULL
PPP2R5A	5525	genome.wustl.edu	37	1	212530627	212530627	+	Splice_Site	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_006243.2	+1	reviewed	e11+1	1.000	108	0%	138	39.9%	-	-	-	-	-	-
USH2A	7399	genome.wustl.edu	37	1	216052241	216052241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_206933.2	-1	reviewed	p.E2808G	1.000	178	0%	81	43.2%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_Fibronectin type III
TLR5	7100	genome.wustl.edu	37	1	223286142	223286142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_003268.5	-1	reviewed	p.G78R	0.998	88	0%	116	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52058
LRRTM4	80059	genome.wustl.edu	37	2	76975863	76975863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001134745.1	-1	validated	p.R577S	1.000	133	0%	170	45.3%	-	-	possibly_damaging(0.485)	tolerated(0.07)	deleterious(0.480)	NULL
FBLN2	2199	genome.wustl.edu	37	3	13613054	13613054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001004019.1	+1	reviewed	p.P400Q	0.000	22	0%	53	35.8%	-	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001098209.1	+1	reviewed	p.D32Y	1.000	65	0%	75	41.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITIH4	3700	genome.wustl.edu	37	3	52852195	52852195	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	ENST00000346281	-1	known	p.P707	0.029	31	0%	127	41.7%	-	-	-	-	-	NULL
OR5AC2	81050	genome.wustl.edu	37	3	97806342	97806342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_054106.1	+1	provisional	p.S109I	0.024	277	0%	169	39.6%	-	-	benign(0.032)	tolerated(0.08)	neutral(0.301)	HMMPfam_7tm_1,superfamily_SSF81321
TSC22D2	9819	genome.wustl.edu	37	3	150176210	150176210	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	ENST00000466814	+1	known	p.S134G	1.000	120	0%	81	50.6%	-	-	-	-	-	HMMPfam_TSC22,PatternScan_TSC22
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_006218.2	+1	reviewed	p.E545K	1.000	53	0%	89	25.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
ADH1A	124	genome.wustl.edu	37	4	100205875	100205875	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_000667.2	-1	reviewed	p.N115	0.000	273	0%	240	40.8%	-	-	-	-	-	superfamily_GroES-like,HMMPfam_ADH_N
PCDHB5	26167	genome.wustl.edu	37	5	140515039	140515039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_015669.2	+1	reviewed	p.T8M	0.146	115	0%	234	41.9%	-	-	benign(0.006)	tolerated(0.15)	neutral(0.241)	NULL
PCDHGA7	56108	genome.wustl.edu	37	5	140762918	140762918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_018920.2	+1	reviewed	p.R151Q	0.099	17	0%	85	44.7%	-	-	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMPfam_Cadherin,superfamily_Cadherin-like
CPLX2	10814	genome.wustl.edu	37	5	175307104	175307104	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	ENST00000393746	+1	known	p.S135	1.000	122	0%	70	41.4%	-	-	-	-	-	NULL
LRRC4	64101	genome.wustl.edu	37	7	127669971	127669971	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_022143.4	-1	validated	p.L241	0.937	6	0.000	25	0.480	-	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
CHRNB3	1142	genome.wustl.edu	37	8	42586852	42586852	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_000749.3	+1	validated	p.I134	0.000	50	0%	72	51.4%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
TMEM2	23670	genome.wustl.edu	37	9	74313084	74313084	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_013390.2	-1	validated	p.R1138	0.997	256	0%	106	34%	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	ENST00000371953	+1	known	p.R130G	1.000	269	0%	148	81.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
DPYSL4	10570	genome.wustl.edu	37	10	134016262	134016262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_006426.2	+1	validated	p.A465V	0.001	18	0%	157	31.8%	-	-	benign(0.016)	tolerated(0.53)	neutral(0.008)	NULL
OR51Q1	390061	genome.wustl.edu	37	11	5443623	5443623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001004757.2	+1	validated	p.L65I	0.953	454	0%	369	37.7%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_SSF81321
KCNC1	3746	genome.wustl.edu	37	11	17757767	17757767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001112741.1	+1	reviewed	p.T73M	1.000	27	0%	53	18.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
MAP3K11	4296	genome.wustl.edu	37	11	65366882	65366882	+	Missense_Mutation	SNP	C	C	T	rs35487354	byCluster;byFrequency;by1000genomes	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_002419.3	-1	reviewed	p.R730H	0.955	4	0.000	22	0.273	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NDUFS8	4728	genome.wustl.edu	37	11	67803940	67803940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_002496.3	+1	reviewed	p.F171L	0.678	25	0%	117	35.9%	-	-	benign(0.271)	deleterious(0.04)	neutral(0.378)	superfamily_alpha-helical ferredoxin
MLL2	8085	genome.wustl.edu	37	12	49445284	49445294	+	Frame_Shift_Del	DEL	GTGGCAACAGG	GTGGCAACAGG	-	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	GTGGCAACAGG	GTGGCAACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_003482.3	-1	validated	p.L725fs	0.995:0.991:0.997:0.987:0.000:0.002:0.013:0.012:0.021:0.014:0.015	-	-	-	-	-	-	-	-	-	NULL
GRIP1	23426	genome.wustl.edu	37	12	66800108	66800108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_021150.3	-1	reviewed	p.E595K	1.000	170	0%	171	41.5%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PTPRQ	374462	genome.wustl.edu	37	12	80935596	80935596	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001145026.1	+1	validated	p.P989L	0.991	19	0%	18	61.1%	-	-	-	-	-	NULL
ABHD4	63874	genome.wustl.edu	37	14	23070609	23070609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_022060.2	+1	validated	p.R21C	1.000	204	0%	194	40.2%	-	-	unknown(0)	deleterious(0.01)	-	NULL
HOMER2	9455	genome.wustl.edu	37	15	83544109	83544109	+	Silent	SNP	C	C	T	rs139619821	by1000genomes	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_199330.1	-1	reviewed	p.T70	0.013	186	0.5%	144	30.6%	-	-	-	-	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
C16orf91	283951	genome.wustl.edu	37	16	1469996	1469996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001010878.1	-1	provisional	p.R340K	0.694	39	0%	121	43.8%	-	-	unknown(0)	-	-	NULL
SEPT12	124404	genome.wustl.edu	37	16	4829717	4829717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_144605.3	-1	validated	p.R266Q	1.000	76	0%	168	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACSM1	116285	genome.wustl.edu	37	16	20648698	20648698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_052956.2	-1	validated	p.V398I	0.008	257	0%	42	47.6%	-	-	benign(0.067)	tolerated(0.49)	neutral(0.015)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
LOC100289580	100289580	genome.wustl.edu	37	16	88804925	88804925	+	Frame_Shift_Del	DEL	C	C	-	rs144303071	byCluster;by1000genomes	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	XM_002344125.1	+1	model	p.Q42fs	0.001	-	-	-	-	-	-	-	-	-	NULL
SMTNL2	342527	genome.wustl.edu	37	17	4496467	4496467	+	Splice_Site	SNP	G	G	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001114974.1	+1	validated	e3+1	0.999	20	0%	48	20.8%	-	-	-	-	-	-
PLD2	5338	genome.wustl.edu	37	17	4721857	4721857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_002663.3	+1	validated	p.T693M	1.000	92	0%	233	38.2%	-	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	superfamily_Phospholipase D/nuclease
PROCA1	147011	genome.wustl.edu	37	17	27038587	27038587	+	Splice_Site	DEL	C	C	-	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_152465.1	-1	provisional	e1+1	0.131	-	-	-	-	-	-	-	-	-	-
RFX1	5989	genome.wustl.edu	37	19	14074787	14074787	+	Silent	SNP	C	C	T	rs137952654	by1000genomes	TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_002918.4	-1	validated	p.L748	1.000	4	0.000	15	0.600	-	-	-	-	-	NULL
RLN3	117579	genome.wustl.edu	37	19	14141676	14141676	+	Silent	SNP	G	G	C	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_080864.2	+1	validated	p.R115	0.001	28	0%	57	45.6%	-	-	-	-	-	HMMSmart_IlGF,superfamily_Insulin-like
ARHGAP33	115703	genome.wustl.edu	37	19	36275204	36275204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_052948.3	+1	reviewed	p.G518S	1.000	609	0.5%	326	11%	-	-	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
IRF2BP1	26145	genome.wustl.edu	37	19	46387941	46387941	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_015649.1	-1	provisional	p.G364	0.869	4	0.000	10	0.700	-	-	-	-	-	NULL
AHCY	191	genome.wustl.edu	37	20	32878605	32878605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_000687.2	-1	reviewed	p.R233Q	0.999	80	0%	117	11.1%	-	-	possibly_damaging(0.826)	deleterious(0.02)	deleterious(0.697)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
APP	351	genome.wustl.edu	37	21	27269929	27269929	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_000484.3	-1	reviewed	p.E674*	0.991	250	0%	112	26.8%	-	-	-	-	-	NULL
ARSH	347527	genome.wustl.edu	37	X	2933044	2933044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_001011719.1	+1	validated	p.R125Q	0.003	196	0%	162	38.9%	-	-	probably_damaging(0.993)	tolerated(0.6)	neutral(0.455)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
OGT	8473	genome.wustl.edu	37	X	70775930	70775930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_181672.2	+1	reviewed	p.R351C	1.000	252	0%	117	35.9%	-	-	benign(0.006)	tolerated(0.18)	neutral(0.056)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ACRC	93953	genome.wustl.edu	37	X	70823595	70823595	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_052957.4	+1	validated	p.S156	0.004	211	0%	152	43.4%	-	-	-	-	-	NULL
RHOXF1	158800	genome.wustl.edu	37	X	119249401	119249401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_139282.1	-1	provisional	p.H124Q	0.000	5	0.000	80	0.500	-	-	benign(0.014)	tolerated(0.07)	neutral(0.320)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ARHGAP36	158763	genome.wustl.edu	37	X	130217929	130217929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0W2-01A-11D-A117-09	TCGA-BG-A0W2-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdce6025-d5a4-4656-a73b-f697cb62f886	746a1f76-b0c4-4187-a948-87e9baa5c521	NM_144967.3	+1	validated	p.R181C	1.000	105	0%	90	43.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
