Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ZFYVE9	9372	genome.wustl.edu	37	1	52798578	52798578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_004799.2	+1	reviewed	p.Q1193E	1.000	109	0%	37	18.9%	15	13.3%	possibly_damaging(0.702)	deleterious(0.01)	deleterious(0.658)	NULL
ABCA4	24	genome.wustl.edu	37	1	94520823	94520823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_000350.2	-1	reviewed	p.R811C	1.000	48	0%	26	38.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RYR2	6262	genome.wustl.edu	37	1	237780625	237780625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001035.2	+1	reviewed	p.R1919W	1.000	100	0%	29	34.5%	0	-	probably_damaging(1)	-	-	NULL
OR2C3	81472	genome.wustl.edu	37	1	247695780	247695780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_198074.4	-1	validated	p.V12F	0.000	65	0%	70	40%	0	-	benign(0.293)	tolerated(0.34)	neutral(0.113)	superfamily_SSF81321
C2orf71	388939	genome.wustl.edu	37	2	29296591	29296591	+	Silent	SNP	A	A	C	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001029883.1	-1	provisional	p.P179	0.995	164	0%	256	21.9%	0	-	-	-	-	NULL
OR5AC2	81050	genome.wustl.edu	37	3	97806608	97806608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_054106.1	+1	provisional	p.A198T	0.000	122	0%	52	38.5%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_SSF81321
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_006218.2	+1	reviewed	p.E542K	1.000	223	0%	42	33.3%	13	53.8%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
LMLN	89782	genome.wustl.edu	37	3	197703477	197703477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001136049.2	+1	reviewed	p.A147E	1.000	98	0%	81	48.1%	0	-	benign(0.001)	tolerated(1)	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
FBXW7	55294	genome.wustl.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_033632.2	-1	reviewed	p.R465C	1.000	212	0.5%	40	42.5%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FAT2	2196	genome.wustl.edu	37	5	150925331	150925331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001447.2	-1	reviewed	p.V1786E	0.997	133	0%	54	29.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,superfamily_Cadherin-like
FOXI1	2299	genome.wustl.edu	37	5	169533528	169533528	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_012188.4	+1	reviewed	p.D189	0.996	30	0%	71	43.7%	0	-	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
HIST1H2AK	8330	genome.wustl.edu	37	6	27805781	27805781	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_003510.2	-1	reviewed	p.Q113E	1.000	82	0%	91	45.1%	2	0%	benign(0.17)	deleterious(0)	neutral(0.460)	HMMSmart_SM00414,superfamily_Histone-fold
LTA	4049	genome.wustl.edu	37	6	31541100	31541100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_000595.2	+1	reviewed	p.T83M	0.406	54	1.9%	79	39.2%	1	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
IBTK	25998	genome.wustl.edu	37	6	82950066	82950066	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_015525.2	-1	reviewed	p.T46	0.989	229	0.4%	155	25.2%	14	28.5%	-	-	-	superfamily_Ankyrin repeat
COBL	23242	genome.wustl.edu	37	7	51095654	51095654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_015198.3	-1	validated	p.G1047S	0.000	104	0%	62	35.5%	21	61.9%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
AKR1B1	231	genome.wustl.edu	37	7	134134544	134134545	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001628.2	-1	reviewed	p.G119fs	0.001:0.992	-	-	-	-	-	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
NOBOX	135935	genome.wustl.edu	37	7	144098554	144098554	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001080413.2	-1	provisional	p.P143	0.000	22	0%	53	30.2%	0	-	-	-	-	NULL
GIMAP6	474344	genome.wustl.edu	37	7	150325061	150325061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_024711.4	-1	reviewed	p.E209K	0.576	79	0%	27	48.1%	2	0%	benign(0.207)	tolerated(0.27)	neutral(0.054)	HMMPfam_AIG1,superfamily_P-loop containing nucleoside triphosphate hydrolases
LPL	4023	genome.wustl.edu	37	8	19813497	19813497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	ENST00000311322	+1	known	p.K307N	1.000	105	0%	19	57.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PDP1	54704	genome.wustl.edu	37	8	94930118	94930118	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	ENST00000396200	+1	known	p.S18	1.000	145	0%	291	29.9%	5	60%	-	-	-	NULL
C1QL3	389941	genome.wustl.edu	37	10	16562683	16562683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001010908.1	-1	validated	p.A128S	1.000	27	0%	52	21.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
INSC	387755	genome.wustl.edu	37	11	15197353	15197353	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001031853.3	+1	provisional	p.C88W	0.943	42	0%	41	36.6%	1	0%	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	NULL
SRPR	6734	genome.wustl.edu	37	11	126135707	126135709	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	CCA	CCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_003139.3	-1	reviewed	p.V354in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SRP54
LRTM2	654429	genome.wustl.edu	37	12	1940175	1940175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001039029.2	+1	validated	p.R48G	0.288	35	0%	43	27.9%	0	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
TAPBPL	55080	genome.wustl.edu	37	12	6571287	6571287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_018009.4	+1	validated	p.R460H	0.000	20	0%	30	26.7%	55	32.7%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CHD4	1108	genome.wustl.edu	37	12	6696686	6696686	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001273.2	-1	reviewed	p.H1248P	1.000	168	0%	143	38.5%	258	40.3%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
DTX1	1840	genome.wustl.edu	37	12	113534660	113534660	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_004416.2	+1	reviewed	p.H593	0.986	9	0.000	18	0.556	18	16.6%	-	-	-	NULL
IPO4	79711	genome.wustl.edu	37	14	24653953	24653953	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_024658.3	-1	validated	p.A513	0.997	19	0%	33	33.3%	68	50%	-	-	-	superfamily_ARM repeat
DICER1	23405	genome.wustl.edu	37	14	95560482	95560482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_030621.3	-1	reviewed	p.R1703C	1.000	44	0%	12	33.3%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,PatternScan_RNASE_3_1,superfamily_RNase_III
FAN1	22909	genome.wustl.edu	37	15	31197155	31197155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_014967.4	+1	reviewed	p.V97I	0.000	154	0%	155	16.1%	6	0%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
PAQR5	54852	genome.wustl.edu	37	15	69689866	69689866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_001104554.1	+1	validated	p.Y191C	0.989	242	0%	208	45.2%	27	48.1%	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	HMMPfam_HlyIII
PIEZO1	9780	genome.wustl.edu	37	16	88783277	88783277	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	ENST00000451779	-1	known	p.P1767	0.983	16	0%	29	31%	74	37.8%	-	-	-	NULL
LEPREL4	10609	genome.wustl.edu	37	17	39967129	39967129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_006455.2	-1	validated	p.Y258S	1.000	24	0%	21	19%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCRN2	90507	genome.wustl.edu	37	17	45915919	45915920	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_138355.3	-1	validated	p.305in_frame_insL	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GNA13	10672	genome.wustl.edu	37	17	63010425	63010425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_006572.4	-1	validated	p.V362M	1.000	115	0.9%	92	20.7%	49	20.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAI2	64446	genome.wustl.edu	37	17	72277980	72277980	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_023036.4	+1	reviewed	p.V8	0.045	20	0%	30	56.7%	0	-	-	-	-	NULL
EFCAB8	388795	genome.wustl.edu	37	20	31481057	31481057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	ENST00000440534	+1	known	p.T279I	0.000	78	0%	43	37.2%	0	-	benign(0.179)	tolerated(0.16)	neutral(0.076)	superfamily_WD40 repeat-like
ADRM1	11047	genome.wustl.edu	37	20	60881357	60881358	+	In_Frame_Ins	INS	-	-	GAACTCTCT	rs190468988	by1000genomes	TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_007002.2	+1	reviewed	p.148in_frame_insELS	0.973:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ARM_1
RAI2	10742	genome.wustl.edu	37	X	17819813	17819813	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_021785.4	-1	reviewed	p.P106	0.003	29	0%	20	45%	181	95.5%	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32430134	32430193	+	Splice_Site	DEL	CTAGACTCTTCCACAATCACCTTTTTGTAAGACAGATTTCGCAGCTTCCTGGCACTCATT	CTAGACTCTTCCACAATCACCTTTTTGTAAGACAGATTTCGCAGCTTCCTGGCACTCATT	-	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	CTAGACTCTTCCACAATCACCTTTTTGTAAGACAGATTTCGCAGCTTCCTGGCACTCATT	CTAGACTCTTCCACAATCACCTTTTTGTAAGACAGATTTCGCAGCTTCCTGGCACTCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_004012.3	-1	reviewed	e2-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.756:0.959:0.995:0.996:0.997:0.995:0.873:0.948:0.943:0.947:0.971:0.996:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
MSN	4478	genome.wustl.edu	37	X	64956728	64956730	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-D1-A0ZP-01A-21D-A10M-09	TCGA-D1-A0ZP-10A-01D-A10M-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cc29f6ff-fca8-4a3b-8389-5ba057ef2180	25957f01-5985-4cf9-ad34-7d47e9ef2f27	NM_002444.2	+1	reviewed	p.E346in_frame_del	1.000:0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ERM,superfamily_SSF50729
