Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
C2orf68	388969	genome.wustl.edu	37	2	85836600	85836600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001013649.3	-1	validated	p.Y112	0.918	78	0%	53	28.3%	36	36.1%	-	-	-	HMMPfam_UPF0561
IL37	27178	genome.wustl.edu	37	2	113676249	113676249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_014439.3	+1	reviewed	p.G174R	0.018	175	0%	133	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
SEMA5B	54437	genome.wustl.edu	37	3	122658297	122658297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001031702.2	-1	validated	p.S150N	1.000	198	0%	121	35.5%	0	-	benign(0.019)	tolerated(0.24)	neutral(0.038)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_006218.2	+1	reviewed	p.H1047R	1.000	174	0%	40	35%	16	37.5%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
GABRG1	2565	genome.wustl.edu	37	4	46043100	46043100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_173536.3	-1	reviewed	p.R435C	1.000	281	0%	51	27.5%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MLF1IP	79682	genome.wustl.edu	37	4	185646136	185646136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_024629.3	-1	validated	p.P99S	0.009	429	0%	376	27.7%	6	50%	benign(0.088)	tolerated(0.25)	neutral(0.043)	NULL
CDH18	1016	genome.wustl.edu	37	5	19571896	19571896	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_004934.3	-1	reviewed	p.G349*	1.000	194	0%	56	25%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDK7	1022	genome.wustl.edu	37	5	68530824	68530824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001799.3	+1	validated	p.R8W	1.000	66	0%	52	32.7%	20	55%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like
HIST1H2BD	3017	genome.wustl.edu	37	6	26158680	26158680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_021063.2	+1	reviewed	p.I95V	1.000	126	0%	146	32.9%	207	43.4%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold
EPB41L2	2037	genome.wustl.edu	37	6	131277183	131277183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001431.3	-1	validated	p.P148H	0.137	525	0%	324	31.5%	13	30.7%	benign(0)	deleterious(0)	neutral(0.445)	NULL
CALCR	799	genome.wustl.edu	37	7	93108745	93108745	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001742.3	-1	reviewed	p.V42	0.000	408	0%	71	22.5%	0	-	-	-	-	superfamily_SSF111418
CUX1	1523	genome.wustl.edu	37	7	101459313	101459313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001913.2	+1	reviewed	p.M1I	1.000	55	0%	47	17%	4	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
FLNC	2318	genome.wustl.edu	37	7	128478482	128478482	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001458.4	+1	reviewed	p.A403	0.395	85	0%	66	25.8%	0	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
DPY19L4	286148	genome.wustl.edu	37	8	95800201	95800201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_181787.2	+1	validated	p.V643A	1.000	79	0%	45	33.3%	10	40%	benign(0.111)	deleterious(0.01)	neutral(0.414)	HMMPfam_DUF2211
EIF2C2	27161	genome.wustl.edu	37	8	141569592	141569592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	ENST00000220592	-1	known	p.I231T	1.000	208	0%	262	29.4%	1	0%	possibly_damaging(0.729)	tolerated(0.1)	deleterious(0.552)	superfamily_PAZ domain
TLE1	7088	genome.wustl.edu	37	9	84235443	84235444	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_005077.3	-1	provisional	p.R209fs	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
BICD2	23299	genome.wustl.edu	37	9	95482729	95482729	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001003800.1	-1	reviewed	p.H305	0.003	104	0%	95	22.1%	2	50%	-	-	-	HMMPfam_BicD
GLUD1	2746	genome.wustl.edu	37	10	88854287	88854287	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_005271.3	-1	reviewed	p.I80	1.000	38	0%	41	29.3%	13	38.4%	unknown(0)	deleterious(0.02)	-	superfamily_SSF53223
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Frame_Shift_Del	DEL	G	G	-	rs121913292		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	ENST00000371953	+1	known	p.R130fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
OR52A1	23538	genome.wustl.edu	37	11	5173229	5173229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_012375.2	-1	validated	p.R124H	0.970	156	0%	95	11.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
NLRP10	338322	genome.wustl.edu	37	11	7982095	7982095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_176821.3	-1	reviewed	p.G355D	0.741	76	0%	46	15.2%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
SHANK2	22941	genome.wustl.edu	37	11	70319322	70319324	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_012309.3	-1	reviewed	p.S1139in_frame_del	0.515:0.995:0.987	-	-	-	-	-	-	-	-	-	NULL
IFFO1	25900	genome.wustl.edu	37	12	6657320	6657320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001039670.1	-1	validated	p.E456K	1.000	148	0%	120	29.2%	7	0%	benign(0.209)	tolerated(0.12)	neutral(0.281)	NULL
PPP1R1A	5502	genome.wustl.edu	37	12	54971251	54971251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	ENST00000379690	-1	known	p.R128H	0.000	35	0%	27	22.2%	0	-	benign(0.356)	deleterious(0)	deleterious(0.557)	HMMPfam_DARPP-32
GNPTAB	79158	genome.wustl.edu	37	12	102158901	102158901	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_024312.4	-1	reviewed	p.I598	0.997	534	0%	271	26.9%	5	40%	-	-	-	NULL
DLGAP5	9787	genome.wustl.edu	37	14	55649132	55649132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_014750.4	-1	validated	p.R151W	0.062	450	0%	307	29%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYP19A1	1588	genome.wustl.edu	37	15	51503148	51503148	+	Nonsense_Mutation	SNP	G	G	A	rs72552260	byFrequency	TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_000103.3	-1	reviewed	p.R457*	0.992	231	0%	59	25.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
TSC2	7249	genome.wustl.edu	37	16	2122351	2122351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_000548.3	+1	reviewed	p.A736V	0.842	188	0%	133	27.1%	13	23%	benign(0.014)	tolerated(0.32)	neutral(0.025)	HMMPfam_Tuberin
GPRC5B	51704	genome.wustl.edu	37	16	19883930	19883930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_016235.1	-1	reviewed	p.R80W	1.000	35	2.9%	36	25%	16	37.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_3
ITGAX	3687	genome.wustl.edu	37	16	31384684	31384684	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_000887.3	+1	reviewed	p.L827	1.000	60	0%	38	31.6%	34	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
SLC6A2	6530	genome.wustl.edu	37	16	55690797	55690797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_001043.3	+1	reviewed	p.D64A	1.000	41	0%	35	11.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
CTCF	10664	genome.wustl.edu	37	16	67645168	67645168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_006565.2	+1	reviewed	p.E145*	1.000	125	0%	104	27.9%	6	0%	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67650756	67650756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_006565.2	+1	reviewed	p.S354F	1.000	209	0%	128	23.4%	14	64.2%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PSKH1	5681	genome.wustl.edu	37	16	67961465	67961465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_006742.2	+1	validated	p.R399C	1.000	38	0%	25	28%	15	26.6%	benign(0.175)	deleterious(0)	neutral(0.461)	NULL
UNC45B	146862	genome.wustl.edu	37	17	33504593	33504593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_173167.2	+1	validated	p.G742V	0.994	54	1.9%	40	27.5%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	superfamily_ARM repeat
POLRMT	5442	genome.wustl.edu	37	19	630129	630129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_005035.3	-1	reviewed	p.V78G	0.002	29	0%	22	22.7%	7	0%	benign(0.073)	deleterious(0.02)	neutral(0.388)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51214734	51214734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_016148.2	-1	validated	p.R324Q	0.971	41	0%	40	42.5%	2	0%	probably_damaging(0.978)	tolerated(0.15)	deleterious(0.661)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RNF114	55905	genome.wustl.edu	37	20	48558160	48558160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_018683.3	+1	validated	p.R68H	1.000	88	0%	75	21.3%	50	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RING/U-box
CHRNA4	1137	genome.wustl.edu	37	20	61981658	61981658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_000744.5	-1	reviewed	p.R369W	1.000	71	0%	63	31.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CDC45	8318	genome.wustl.edu	37	22	19496067	19496067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_003504.3	+1	reviewed	p.R357H	1.000	201	0%	151	25.8%	5	20%	probably_damaging(0.959)	tolerated(0.08)	deleterious(0.703)	HMMPfam_CDC45
PLXNB2	23654	genome.wustl.edu	37	22	50728584	50728584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_012401.2	-1	validated	p.V144M	1.000	49	0%	40	25%	45	22.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
TAB3	257397	genome.wustl.edu	37	X	30870926	30870926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_152787.3	-1	reviewed	p.R560I	1.000	235	0%	96	28.1%	2	0%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49033258	49033258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_006150.3	-1	reviewed	p.A417T	0.000	42	0%	32	34.4%	5	0%	benign(0.006)	tolerated(1)	-	NULL
GPR50	9248	genome.wustl.edu	37	X	150348764	150348764	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZV-01A-11D-A10M-09	TCGA-D1-A0ZV-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cdf05c77-838f-4383-8544-f31566cde2b8	54995927-ffaa-4e07-840c-c1f4c875635f	NM_004224.3	+1	reviewed	p.L237	1.000	247	0%	183	32.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
