writing sdrf to BLCA.merger.sdrf.txt

------------------------------------------------------------------
2013-05-09 17:59:20.006615
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/BLCA/3199471/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/BLCA/3199471/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BL-A0C8-01.wig.txt
('', None)
0
54acfe00621eb8faf7c9c94eea6046ee
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BL-A13I-01.wig.txt
('', None)
0
ddfb42fc357c9fb8e34a59af3b7a8afe
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BL-A13J-01.wig.txt
('', None)
0
f3cfd2657952c959caa0cf84dcc9fc78
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A0S7-01.wig.txt
('', None)
0
de691ec6b51af3949cc9f345ce7e1489
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A0YX-01.wig.txt
('', None)
0
44c8247b601f05a91976bb04679a33c1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20J-01.wig.txt
('', None)
0
2df34c2cb35182e3292ac81c42dbf36a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20N-01.wig.txt
('', None)
0
cb5f119cb16956a65b0ea3771d9c858e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20O-01.wig.txt
('', None)
0
a3591dc464f14d6cc19458d10f5fdcc4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20P-01.wig.txt
('', None)
0
62eab3dac5c7e851bb6d3c98f2f52376
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20Q-01.wig.txt
('', None)
0
03ddeae10f021154e3ce4260c58afde9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20T-01.wig.txt
('', None)
0
8dff40c93edbd114930130529c144231
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20U-01.wig.txt
('', None)
0
7dbbf31473c212486c5c98a523a07059
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20V-01.wig.txt
('', None)
0
d2f8d81fe8003c60d6be934211fc286e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-BT-A20W-01.wig.txt
('', None)
0
9b7f7e67911d780dfb77016b214b7fa4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C4-A0EZ-01.wig.txt
('', None)
0
ce6446fe70d5306074eff3794f323af8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C4-A0F0-01.wig.txt
('', None)
0
f320875242bec18d3173ae0266595c37
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C4-A0F1-01.wig.txt
('', None)
0
1c7075a46c7ff1cc6d66de025ab547fb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C4-A0F6-01.wig.txt
('', None)
0
01c489a23689cd652bef3fa2cbc14c8a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-C4-A0F7-01.wig.txt
('', None)
0
7dbbe7e4b50dd23af5fa91bb0b7d48c1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-CF-A1HR-01.wig.txt
('', None)
0
c66f40a8a4abf9e485aab1b6d66cc607
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-CF-A1HS-01.wig.txt
('', None)
0
9faabe4e49464698be5db932d65d980a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-CU-A0YN-01.wig.txt
('', None)
0
fe72e14aee57bf243db360a7dccf5fb2
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-CU-A0YO-01.wig.txt
('', None)
0
858dfaeb84d09d972a3f61360c997609
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-CU-A0YR-01.wig.txt
('', None)
0
d144a94e0a780b4441a2e84309c22ff0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DK-A1A3-01.wig.txt
('', None)
0
7ae807d3bd225aa5f6a50e34c7b108e4
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DK-A1A5-01.wig.txt
('', None)
0
6d0b795c8a5a341eb2976a95c63a7464
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DK-A1A7-01.wig.txt
('', None)
0
2f9f07e1edbd7c8267f641301c2db5d2
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.4.0/TCGA-DK-A1AB-01.wig.txt
('', None)
0
8ef4a27e915c1959fff16b1ddd60954c
It is not in the dictionary
Make a softlink is done.


