# Created: Thu May 09 19:18:54 EDT 2013 by cgaadm_deadline
# Job: 401342    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_RPPA_preprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:10
# Parameters: 
#    Rppafile = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/3199539/GDAC_DataMerger_3122963/BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
#    annotationfile = file:/xchip/gdac_data/normalized/aux_annotations/antibody_gene_annotations/BRCA.2013_02_22__10_08_08.antibody_annotation.txt
#    outputname = BRCA
#    colgene = 1
#    colantibody = 3
