Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PGD	5226	broad.mit.edu	37	1	10477062	10477062	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:10477062G>A	uc001arc.2	+	9	953	c.863G>A	c.(862-864)CGG>CAG	p.R288Q	PGD_uc001ard.2_Missense_Mutation_p.R208Q|PGD_uc010oak.1_Missense_Mutation_p.R266Q|PGD_uc010oal.1_Missense_Mutation_p.R275Q	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	288		Substrate (By similarity).			pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GTCTTTGCTCGGTGCTTATCA	0.348													6	49					0	0	0.001168	0	0
RHD	6007	broad.mit.edu	37	1	25633201	25633201	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:25633201G>A	uc001bjz.2	+	7	1112	c.1054G>A	c.(1054-1056)GTC>ATC	p.V352I	RHD_uc010oep.1_Missense_Mutation_p.V352I|RHD_uc001bkc.2_Intron|RHD_uc009vrm.2_Missense_Mutation_p.V184I|RHD_uc001bka.2_Missense_Mutation_p.V352I|RHD_uc001bkb.2_Missense_Mutation_p.V352I|RHD_uc009vrn.2_Intron|RHD_uc009vro.2_Missense_Mutation_p.V352I|RHD_uc009vrp.2_Missense_Mutation_p.V352I|uc001bkd.1_5'Flank	NM_016124	NP_057208	Q02161	RHD_HUMAN	Rh blood group D antigen isoform 1	352	Helical; (Potential).					integral to plasma membrane				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.39e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000332)|BRCA - Breast invasive adenocarcinoma(304;0.000438)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000908)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCTTGATACCGTCGGAGCCGG	0.557													39	171					0	0	0.006230	0	0
RHCE	6006	broad.mit.edu	37	1	25701870	25701870	+	Missense_Mutation	SNP	C	T	T	rs147526117	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:25701870C>T	uc001bkf.2	-	8	1209	c.1123G>A	c.(1123-1125)GTG>ATG	p.V375M	RHCE_uc001bkg.2_Missense_Mutation_p.R330H|RHCE_uc001bkh.2_Intron|RHCE_uc001bki.2_Missense_Mutation_p.V224M|RHCE_uc001bkj.2_Missense_Mutation_p.V359M	NM_020485	NP_065231	P18577	RHCE_HUMAN	Rhesus blood group, CcEe antigens isoform 1	375	Helical; (Potential).					integral to plasma membrane					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0426)|OV - Ovarian serous cystadenocarcinoma(117;2.12e-27)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|STAD - Stomach adenocarcinoma(196;0.00035)|KIRC - Kidney renal clear cell carcinoma(1967;0.000769)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|GBM - Glioblastoma multiforme(114;0.00458)|READ - Rectum adenocarcinoma(331;0.0649)		AGAGCTATCACGATGGCCAAG	0.577													26	156					0	0	0.003330	0	0
RAD54L	8438	broad.mit.edu	37	1	46740246	46740246	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:46740246G>A	uc009vye.2	+	17	1840	c.1726G>A	c.(1726-1728)GGG>AGG	p.G576R	RAD54L_uc001cpl.2_Missense_Mutation_p.G576R|RAD54L_uc001cpm.1_Missense_Mutation_p.G359R	NM_001142548	NP_001136020	Q92698	RAD54_HUMAN	RAD54-like protein	576	Helicase C-terminal.				meiosis	nucleus	ATP binding|DNA binding|helicase activity			ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(166;0.155)	Breast(1374;0.0634)		KIRC - Kidney renal clear cell carcinoma(1967;0.000896)		CAGCAAAGCTGGGGGCTGTGG	0.542								Direct_reversal_of_damage|Homologous_recombination					24	155					0	0	0.003954	0	0
FAM151A	338094	broad.mit.edu	37	1	55075036	55075036	+	Silent	SNP	A	G	G	rs146631039	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:55075036A>G	uc001cxn.2	-	8	1795	c.1663T>C	c.(1663-1665)TTG>CTG	p.L555L	ACOT11_uc001cxj.1_3'UTR|ACOT11_uc001cxl.1_3'UTR|ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	555						integral to membrane					0						GCTGCCAGCAATGCTGTCCTC	0.617													6	40					0	0	0.001168	0	0
HS2ST1	9653	broad.mit.edu	37	1	87380807	87380807	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:87380807C>G	uc010osk.1	+	1	473	c.88C>G	c.(88-90)CAG>GAG	p.Q30E	HS2ST1_uc001dmc.3_Missense_Mutation_p.Q30E|SEP15_uc010osi.1_5'Flank|SEP15_uc010osj.1_5'Flank	NM_012262	NP_036394	Q7LGA3	HS2ST_HUMAN	heparan sulfate 2-O-sulfotransferase 1 isoform	30	Lumenal (Potential).					Golgi membrane|integral to membrane				central_nervous_system(1)	1		Lung NSC(277;0.153)		all cancers(265;0.00699)|Epithelial(280;0.0261)		CTTGGAAAACCAGATCCAGAA	0.627													17	60					0	0	0.004990	0	0
DENND2C	163259	broad.mit.edu	37	1	115142942	115142942	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:115142942C>T	uc001efd.1	-	15	2690	c.1988G>A	c.(1987-1989)CGA>CAA	p.R663Q	DENND2C_uc001eez.2_Intron|DENND2C_uc001efc.1_Missense_Mutation_p.R606Q	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	663	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATGTTCCAATCGGGAATCTAG	0.443													6	34					0	0	0.001984	0	0
CASQ2	845	broad.mit.edu	37	1	116243931	116243931	+	Missense_Mutation	SNP	T	A	A	rs148824162	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:116243931T>A	uc001efx.3	-	11	1395	c.1131A>T	c.(1129-1131)GAA>GAT	p.E377D	CASQ2_uc010owu.1_Missense_Mutation_p.E306D	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	377	Asp/Glu-rich (acidic).				heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		catcatcatcttcatcatcat	0.259													5	50					0	0	0.006214	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858563	149858563	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858563C>T	uc001etd.2	+	1	39	c.39C>T	c.(37-39)GCC>GCT	p.A13A	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	13					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			AGGCCCGCGCCAAGGCCAAGT	0.597													39	318					0	0	0.007835	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858593	149858593	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858593C>T	uc001etd.2	+	1	69	c.69C>T	c.(67-69)GGC>GGT	p.G23G	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	23					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCCGCGCTGGCCTCCAGTTCC	0.657													50	308					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858608	149858608	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858608A>G	uc001etd.2	+	1	84	c.84A>G	c.(82-84)GTA>GTG	p.V28V	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	28					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			AGTTCCCGGTAGGGCGAGTGC	0.672													35	340					0	0	0.003755	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858656	149858656	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858656G>C	uc001etd.2	+	1	132	c.132G>C	c.(130-132)GTG>GTC	p.V44V	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	44					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGGAGCGGGTGGGGGCCGGCG	0.711													37	394					0	0	0.005524	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858662	149858662	+	Silent	SNP	C	A	A	rs143870983		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858662C>A	uc001etd.2	+	1	138	c.138C>A	c.(136-138)GCC>GCA	p.A46A	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	46					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GGGTGGGGGCCGGCGCGCCCG	0.697													30	395					5.60225e-13	5.87116e-13	0.009535	1	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858678	149858678	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858678A>C	uc001etd.2	+	1	154	c.154A>C	c.(154-156)ATG>CTG	p.M52L	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	52					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCCCGTCTACATGGCGGCGGT	0.692													35	417					0	0	0.006230	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858707	149858707	+	Silent	SNP	C	G	G	rs145853187		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858707C>G	uc001etd.2	+	1	183	c.183C>G	c.(181-183)GCC>GCG	p.A61A	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	61					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACCTGACCGCCGAGATCCTGG	0.672													32	447					0	0	0.006230	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858710	149858710	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858710G>A	uc001etd.2	+	1	186	c.186G>A	c.(184-186)GAG>GAA	p.E62E	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	62					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			TGACCGCCGAGATCCTGGAGC	0.672													43	440					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858713	149858713	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858713C>T	uc001etd.2	+	1	189	c.189C>T	c.(187-189)ATC>ATT	p.I63I	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	63					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCGCCGAGATCCTGGAGCTGG	0.667													51	438					0	0	0.003610	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858803	149858803	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858803A>G	uc001etd.2	+	1	279	c.279A>G	c.(277-279)GAA>GAG	p.E93E	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	93					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACGACGAGGAACTGAACAAGC	0.597													16	384					0	0	0.002836	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858806	149858806	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149858806G>C	uc001etd.2	+	1	282	c.282G>C	c.(280-282)CTG>CTC	p.L94L	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	94					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACGAGGAACTGAACAAGCTGC	0.582													14	376					0	0	0.002445	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859278	149859278	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859278A>G	uc001ete.2	-	1	189	c.189T>C	c.(187-189)ATT>ATC	p.I63I	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	63					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCAGCTCCAGAATTTCCGCGG	0.637													48	466					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859281	149859281	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859281T>C	uc001ete.2	-	1	186	c.186A>G	c.(184-186)GAA>GAG	p.E62E	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	62					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCTCCAGAATTTCCGCGGTCA	0.647													46	458					0	0	0.003610	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859284	149859284	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859284C>G	uc001ete.2	-	1	183	c.183G>C	c.(181-183)GCG>GCC	p.A61A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	61					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCAGAATTTCCGCGGTCAGGT	0.652													36	447					0	0	0.007835	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859313	149859313	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859313G>T	uc001ete.2	-	1	154	c.154C>A	c.(154-156)CTG>ATG	p.L52M	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	52					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			ACCGCCGCCAGGTACACCGGG	0.682													33	397					7.33879e-07	7.57845e-07	0.006999	1	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859329	149859329	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859329T>G	uc001ete.2	-	1	138	c.138A>C	c.(136-138)GCA>GCC	p.A46A	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	46					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCGGGGCGCCTGCCCCGACCC	0.682													22	380					0	0	0.003954	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859335	149859335	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859335G>C	uc001ete.2	-	1	132	c.132C>G	c.(130-132)GTC>GTG	p.V44V	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	44					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CGCCTGCCCCGACCCGCTCCG	0.697													22	372					0	0	0.003954	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859383	149859383	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859383C>T	uc001ete.2	-	1	84	c.84G>A	c.(82-84)GTG>GTA	p.V28V	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	28					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GCACTCGCCCCACCGGGAACT	0.682													31	316					0	0	0.008361	0	0
HIST2H2AB	317772	broad.mit.edu	37	1	149859398	149859398	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:149859398A>G	uc001ete.2	-	1	69	c.69T>C	c.(67-69)GGT>GGC	p.G23G	HIST2H2BE_uc001etc.2_5'Flank	NM_175065	NP_778235	Q8IUE6	H2A2B_HUMAN	histone cluster 2, H2ab	23					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|breast(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GGAACTGGAGACCAGCGCGGG	0.652													31	316					0	0	0.008361	0	0
TCHH	7062	broad.mit.edu	37	1	152082167	152082167	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152082167G>C	uc001ezp.2	-	2	3526	c.3526C>G	c.(3526-3528)CTG>GTG	p.L1176V	TCHH_uc009wne.1_Missense_Mutation_p.L1176V	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1176	10 X 30 AA tandem repeats.|4-10.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			tcctgctgcagctcctcttcc	0.214													5	115					0	0	0.001368	0	0
TCHH	7062	broad.mit.edu	37	1	152082286	152082286	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152082286A>C	uc001ezp.2	-	2	3407	c.3407T>G	c.(3406-3408)CTG>CGG	p.L1136R	TCHH_uc009wne.1_Missense_Mutation_p.L1136R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1136	4-8.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ttgcctctccagctcctggcg	0.244													9	284					0	0	0.001855	0	0
TCHH	7062	broad.mit.edu	37	1	152082680	152082680	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152082680T>C	uc001ezp.2	-	2	3013	c.3013A>G	c.(3013-3015)AGA>GGA	p.R1005G	TCHH_uc009wne.1_Missense_Mutation_p.R1005G	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1005	10 X 30 AA tandem repeats.|4-4.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			cgttcctctctcagcagctgc	0.149													13	266					0	0	0.005524	0	0
TCHH	7062	broad.mit.edu	37	1	152084717	152084717	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152084717C>G	uc001ezp.2	-	2	976	c.976G>C	c.(976-978)GAG>CAG	p.E326Q	TCHH_uc009wne.1_Missense_Mutation_p.E326Q	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	326	5 X 13 AA tandem repeats of R-R-E-Q-E-E- E-R-R-E-Q-Q-L.|1-1; approximate.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			tcgcgcctctcctgctgctcg	0.015													6	125					0	0	0.006214	0	0
HRNR	388697	broad.mit.edu	37	1	152188022	152188022	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152188022C>T	uc001ezt.1	-	3	6159	c.6083G>A	c.(6082-6084)AGC>AAC	p.S2028N		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2028	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGGCCACAGCTCGATGACTG	0.562													32	675					0	0	0.003755	0	0
FLG2	388698	broad.mit.edu	37	1	152327211	152327211	+	Silent	SNP	A	T	T	rs34134789		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152327211A>T	uc001ezw.3	-	3	3124	c.3051T>A	c.(3049-3051)TCT>TCA	p.S1017S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1017	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCTGAACTAGACCCATGTT	0.493													17	496					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152327607	152327607	+	Silent	SNP	T	G	G	rs12758450		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152327607T>G	uc001ezw.3	-	3	2728	c.2655A>C	c.(2653-2655)GGA>GGC	p.G885G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	885	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCATGTTGTCCAAAGCCAG	0.488													12	475					0	0	0.003755	0	0
FLG2	388698	broad.mit.edu	37	1	152327898	152327898	+	Silent	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152327898A>T	uc001ezw.3	-	3	2437	c.2364T>A	c.(2362-2364)TCT>TCA	p.S788S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	788	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGTCTGTCTAGACCCATGTT	0.517													7	182					0	0	0.005524	0	0
FLG2	388698	broad.mit.edu	37	1	152328222	152328222	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152328222A>G	uc001ezw.3	-	3	2113	c.2040T>C	c.(2038-2040)GGT>GGC	p.G680G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	680	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTGTCCAAAACCAGAGGATT	0.478													16	364					0	0	0.005443	0	0
FLG2	388698	broad.mit.edu	37	1	152328246	152328247	+	Missense_Mutation	DNP	AA	CC	CC	rs144096033	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152328246_152328247AA>CC	uc001ezw.3	-	3	2088_2089	c.2015_2016TT>GG	c.(2014-2016)GTT>GGG	p.V672G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	672	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGCCAGAAACATGTTGTCC	0.48													20	371					0	0	0.004672	0	0
FLG2	388698	broad.mit.edu	37	1	152328282	152328282	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152328282T>C	uc001ezw.3	-	3	2053	c.1980A>G	c.(1978-1980)TCA>TCG	p.S660S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	660	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCTGAGCCTGATCCATATT	0.488													8	314					0	0	0.007413	0	0
FLG2	388698	broad.mit.edu	37	1	152328472	152328472	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152328472C>A	uc001ezw.3	-	3	1863	c.1790G>T	c.(1789-1791)GGG>GTG	p.G597V	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	597	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGCCAGACCCATGTTGTCC	0.517													11	347					2.94398e-08	3.06428e-08	0.007413	1	0
FLG2	388698	broad.mit.edu	37	1	152328647	152328647	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152328647G>C	uc001ezw.3	-	3	1688	c.1615C>G	c.(1615-1617)CGT>GGT	p.R539G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	539	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTAGACTGACGTGATCTAGAC	0.488													9	360					0	0	0.002450	0	0
LCE1E	353135	broad.mit.edu	37	1	152759892	152759892	+	Silent	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152759892A>T	uc001fan.2	+	2	170	c.117A>T	c.(115-117)CCA>CCT	p.P39P		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	39	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGCCCTCCAGTCTCTTCCT	0.557													8	125					0	0	0.006214	0	0
LCE1D	353134	broad.mit.edu	37	1	152770351	152770351	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152770351T>A	uc009wnp.2	+	2	124	c.81T>A	c.(79-81)CCT>CCA	p.P27P		NM_178352	NP_848129	Q5T752	LCE1D_HUMAN	late cornified envelope 1D	27	Cys-rich.				cellular response to calcium ion|keratinization	cornified envelope|perinuclear region of cytoplasm					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gcCCCGCCCCTAAATGTCCCC	0.542													28	218					0	0	0.008361	0	0
LCE1D	353134	broad.mit.edu	37	1	152770354	152770354	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152770354A>G	uc009wnp.2	+	2	127	c.84A>G	c.(82-84)AAA>AAG	p.K28K		NM_178352	NP_848129	Q5T752	LCE1D_HUMAN	late cornified envelope 1D	28	Cys-rich.				cellular response to calcium ion|keratinization	cornified envelope|perinuclear region of cytoplasm					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGCCCCTAAATGTCCCCCTA	0.547													38	215					0	0	0.005524	0	0
LCE1C	353133	broad.mit.edu	37	1	152777599	152777599	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152777599C>T	uc001fap.1	-	2	407	c.356G>A	c.(355-357)TGA>TAA	p.*119*		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	119					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGTCCACTTCAGCAGCAGCC	0.642													8	204					0	0	0.008291	0	0
LCE1C	353133	broad.mit.edu	37	1	152777757	152777757	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152777757T>A	uc001fap.1	-	2	249	c.198A>T	c.(196-198)GGA>GGT	p.G66G		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	66	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACTGCAGCATCCCCCAGAGC	0.632													11	272					0	0	0.001855	0	0
LCE1C	353133	broad.mit.edu	37	1	152777905	152777905	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152777905G>A	uc001fap.1	-	2	101	c.50C>T	c.(49-51)ACC>ATC	p.T17I		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	17	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			gcacttgggggtgcacttggg	0.378													11	150					0	0	0.002450	0	0
LCE1C	353133	broad.mit.edu	37	1	152777938	152777938	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152777938C>T	uc001fap.1	-	2	68	c.17G>A	c.(16-18)AGC>AAC	p.S6N		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	6					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTGCTGCTGGCTCTGCTGGCA	0.368													12	143					0	0	0.001368	0	0
LCE1B	353132	broad.mit.edu	37	1	152785278	152785278	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152785278A>G	uc001faq.2	+	1	832	c.356A>G	c.(355-357)TAA>TGA	p.*119*		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	119					keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCTGCTGCTAAAGTGGATCC	0.587													9	136					0	0	0.006214	0	0
ASPM	259266	broad.mit.edu	37	1	197071244	197071244	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:197071244C>T	uc001gtu.2	-	18	7394	c.7137G>A	c.(7135-7137)CAG>CAA	p.Q2379Q	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Silent_p.Q227Q	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2379					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TGAGATAATGCTGCCTCTGCA	0.443													16	128					0	0	0.006122	0	0
HIST3H2BB	128312	broad.mit.edu	37	1	228645896	228645896	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:228645896A>G	uc001hsz.2	+	1	89	c.66A>G	c.(64-66)GCA>GCG	p.A22A	HIST3H2A_uc001hsy.2_5'Flank	NM_175055	NP_778225	Q8N257	H2B3B_HUMAN	histone cluster 3, H2bb	22					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		Prostate(94;0.183)				TCACCAAGGCACAGAAGAAGG	0.577													13	255					0	0	0.004990	0	0
HIST3H2BB	128312	broad.mit.edu	37	1	228646127	228646127	+	Silent	SNP	T	G	G	rs145799075	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:228646127T>G	uc001hsz.2	+	1	320	c.297T>G	c.(295-297)GTT>GTG	p.V99V	HIST3H2A_uc001hsy.2_5'Flank	NM_175055	NP_778225	Q8N257	H2B3B_HUMAN	histone cluster 3, H2bb	99					nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		Prostate(94;0.183)				AGACGGCCGTTCGCCTGCTGC	0.652													10	189					0	0	0.006214	0	0
KIF26B	55083	broad.mit.edu	37	1	245848883	245848883	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:245848883C>G	uc001ibf.1	+	12	3038	c.2598C>G	c.(2596-2598)ATC>ATG	p.I866M	KIF26B_uc001ibg.1_Missense_Mutation_p.I484M|KIF26B_uc001ibh.1_Missense_Mutation_p.I108M	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	866					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			ACACCGTCATCTACATCGGGC	0.647													9	62					0	0	0.004482	0	0
AKR1C1	1645	broad.mit.edu	37	10	5011017	5011017	+	Missense_Mutation	SNP	G	A	A	rs147374602	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:5011017G>A	uc001iho.2	+	10	1292	c.451G>A	c.(451-453)GTG>ATG	p.V151M	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C1_uc001ihq.2_Missense_Mutation_p.V151M	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	151					bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	TTCCCAGGCCGTGGAGAAGTG	0.458													14	139					0	0	0.004990	0	0
AKR1C2	1646	broad.mit.edu	37	10	5040936	5040936	+	Missense_Mutation	SNP	T	C	C	rs144450879		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:5040936T>C	uc010qan.1	-	5	630	c.451A>G	c.(451-453)ATG>GTG	p.M151V	AKR1E2_uc001ihl.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C2_uc009xhy.2_Missense_Mutation_p.M125V|AKR1C2_uc001ihs.2_Missense_Mutation_p.M151V|AKR1C2_uc001iht.2_Missense_Mutation_p.M151V	NM_205845	NP_995317	P52895	AK1C2_HUMAN	aldo-keto reductase family 1, member C2	151					digestion|prostaglandin metabolic process|steroid metabolic process	cytoplasm	androsterone dehydrogenase (A-specific) activity|bile acid binding|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0					NADH(DB00157)|Ursodeoxycholic acid(DB01586)	CACTTCTCCATGGCCTGGGAA	0.463													21	146					0	0	0.001882	0	0
TAF3	83860	broad.mit.edu	37	10	8007339	8007339	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:8007339T>A	uc010qbd.1	+	3	1866	c.1866T>A	c.(1864-1866)GAT>GAA	p.D622E		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	622	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						agaagaaagatagagagaaag	0.259													6	83					0	0	0.001168	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430948	37430948	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:37430948C>G	uc001iza.1	+	7	1054	c.955C>G	c.(955-957)CCA>GCA	p.P319A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	375						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATTTACGTGGCCAGCAAAAGG	0.423													6	102					0	0	0.001168	0	0
AGAP6	414189	broad.mit.edu	37	10	51767796	51767796	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:51767796G>C	uc001jix.3	+	7	943	c.545G>C	c.(544-546)AGA>ACA	p.R182T		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	182					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						GATGCAGATAGAACTTTGAGC	0.333													8	65					0	0	0.008291	0	0
LRRTM3	347731	broad.mit.edu	37	10	68688049	68688049	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:68688049C>G	uc001jmz.1	+	2	1925	c.1375C>G	c.(1375-1377)CGA>GGA	p.R459G	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.R459G	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	459	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CTCCCTCATGCGAAGGCACAG	0.522													12	78					0	0	0.000978	0	0
SFTPA1	653509	broad.mit.edu	37	10	81373617	81373617	+	Silent	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:81373617A>T	uc001kap.2	+	6	616	c.495A>T	c.(493-495)CCA>CCT	p.P165P	SFTPA1_uc001kaq.2_Silent_p.P165P|SFTPA1_uc009xry.2_Silent_p.P180P|SFTPA1_uc001kar.2_Silent_p.P165P|SFTPA1_uc010qlt.1_Silent_p.P106P|SFTPA1_uc009xrz.2_Silent_p.P95P|SFTPA1_uc009xsa.2_Silent_p.P165P|SFTPA1_uc009xsf.2_RNA	NM_005411	NP_005402	Q8IWL2	SFTA1_HUMAN	surfactant protein A1 isoform 1	165	C-type lectin.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	lipid transporter activity|sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			TTGCTGTCCCAAGGAATCCAG	0.532													10	143					0	0	0.006214	0	0
AGAP11	119385	broad.mit.edu	37	10	88768138	88768138	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:88768138A>C	uc001kee.2	+	12	1333	c.129A>C	c.(127-129)AAA>AAC	p.K43N	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	43					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TTACGAAGAAAAGAAATGGAG	0.458													6	136					0	0	0.001984	0	0
C10orf26	54838	broad.mit.edu	37	10	104536151	104536151	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:104536151C>T	uc001kwe.3	+	1	264	c.4C>T	c.(4-6)CCT>TCT	p.P2S	C10orf26_uc001kwf.3_Intron|C10orf26_uc009xxg.1_Intron	NM_017787	NP_060257	Q9NX94	OPA1L_HUMAN	hypothetical protein LOC54838 isoform 2	2						integral to membrane				central_nervous_system(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;6.14e-09)|all cancers(201;1.66e-07)|BRCA - Breast invasive adenocarcinoma(275;0.224)		TTGCAGGATGCCTTTCCTTTT	0.498													25	87					0	0	0.003330	0	0
SH3PXD2A	9644	broad.mit.edu	37	10	105363441	105363441	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:105363441G>A	uc001kxj.1	-	14	1590	c.1450C>T	c.(1450-1452)CGC>TGC	p.R484C	SH3PXD2A_uc010qqr.1_Intron|SH3PXD2A_uc010qqs.1_Missense_Mutation_p.R319C|SH3PXD2A_uc010qqt.1_Missense_Mutation_p.R361C|SH3PXD2A_uc009xxn.1_Missense_Mutation_p.R319C|SH3PXD2A_uc010qqu.1_Missense_Mutation_p.R427C	NM_014631	NP_055446	Q5TCZ1	SPD2A_HUMAN	SH3 multiple domains 1	512					cell communication|superoxide metabolic process	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol binding|protein binding				0		Colorectal(252;0.0815)|Breast(234;0.131)		Epithelial(162;4.09e-10)|all cancers(201;2.73e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0119)		CTTGTGCGGCGGCTCAGGTTG	0.657													8	71					0	0	0.001855	0	0
LOC653544	653544	broad.mit.edu	37	10	135491047	135491047	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:135491047C>A	uc010qvi.1	+	1	769	c.658C>A	c.(658-660)CAG>AAG	p.Q220K		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	220						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCGCCCGCGCAGGCAGGCGG	0.731													21	454					5.26018e-13	5.51897e-13	0.001882	1	0
IFITM2	10581	broad.mit.edu	37	11	308198	308198	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:308198C>T	uc001lox.3	+	1	92	c.6C>T	c.(4-6)AAC>AAT	p.N2N		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	2	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCACCATGAACCACATTGTGC	0.562													14	470					0	0	0.008871	0	0
IFITM2	10581	broad.mit.edu	37	11	308203	308203	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:308203T>C	uc001lox.3	+	1	97	c.11T>C	c.(10-12)ATT>ACT	p.I4T		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	4	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATGAACCACATTGTGCAAACC	0.562													16	461					0	0	0.007413	0	0
IFITM2	10581	broad.mit.edu	37	11	308207	308207	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:308207G>C	uc001lox.3	+	1	101	c.15G>C	c.(13-15)GTG>GTC	p.V5V		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	5	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		ACCACATTGTGCAAACCTTCT	0.567													17	441					0	0	0.008871	0	0
IFITM2	10581	broad.mit.edu	37	11	308328	308328	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:308328C>A	uc001lox.3	+	1	222	c.136C>A	c.(136-138)CAC>AAC	p.H46N		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	46	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		CACCGTGATCCACATCCGCAG	0.607													14	246					0.000566183	0.000575599	0.004990	1	0
IFITM2	10581	broad.mit.edu	37	11	308397	308397	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:308397A>C	uc001lox.3	+	1	291	c.205A>C	c.(205-207)ACC>CCC	p.T69P		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	69	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		CTTCATGAACACCTGCTGCCT	0.627													15	421					0	0	0.004990	0	0
IFITM2	10581	broad.mit.edu	37	11	309109	309109	+	Missense_Mutation	SNP	T	C	C	rs74901761		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:309109T>C	uc001lox.3	+	2	429	c.343T>C	c.(343-345)TTC>CTC	p.F115L		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	115	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TTTGGGCATCTTCATGACCAT	0.587													42	181					0	0	0.003214	0	0
IFITM2	10581	broad.mit.edu	37	11	309130	309130	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:309130A>G	uc001lox.3	+	2	450	c.364A>G	c.(364-366)ATC>GTC	p.I122V		NM_006435	NP_006426	Q01629	IFM2_HUMAN	interferon induced transmembrane protein 2	122	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		TCTGCTCATCATCATCCCAGT	0.582													9	177					0	0	0.004990	0	0
IFITM1	8519	broad.mit.edu	37	11	314253	314253	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:314253A>G	uc001loy.3	+	1	263	c.83A>G	c.(82-84)CAC>CGC	p.H28R		NM_003641	NP_003632	P13164	IFM1_HUMAN	interferon induced transmembrane protein 1	28	Extracellular (Potential).				negative regulation of cell proliferation|regulation of immune response|response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding|receptor signaling protein activity				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCAACATCCACAGCGAGACC	0.582													30	297					0	0	0.007291	0	0
IFITM1	8519	broad.mit.edu	37	11	315009	315009	+	Silent	SNP	C	T	T	rs3197137		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:315009C>T	uc001loy.3	+	2	454	c.274C>T	c.(274-276)CTG>TTG	p.L92L		NM_003641	NP_003632	P13164	IFM1_HUMAN	interferon induced transmembrane protein 1	92	Interaction with CAV1.|Helical; (Potential).				negative regulation of cell proliferation|regulation of immune response|response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane	protein binding|receptor signaling protein activity				0		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGCCCTGATTCTGGGCATCCT	0.527													16	125					0	0	0.007413	0	0
IFITM3	10410	broad.mit.edu	37	11	320668	320668	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:320668C>T	uc001lpa.2	-	1	247	c.146G>A	c.(145-147)CGC>CAC	p.R49H	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	49	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGTCTCGCTGCGGATGTGGAT	0.632													17	630					0	0	0.004007	0	0
IFITM3	10410	broad.mit.edu	37	11	320675	320675	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:320675G>T	uc001lpa.2	-	1	240	c.139C>A	c.(139-141)CAC>AAC	p.H47N	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	47	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CTGCGGATGTGGATCACGGTG	0.632													19	618					9.7654e-05	9.96093e-05	0.007413	1	0
IFITM3	10410	broad.mit.edu	37	11	320803	320803	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:320803G>A	uc001lpa.2	-	1	112	c.11C>T	c.(10-12)ACT>ATT	p.T4I	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	4	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane		p.T4I(1)		central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		GGTTTGGACAGTGTGATTCAT	0.577													32	503					0	0	0.003610	0	0
KRTAP5-3	387266	broad.mit.edu	37	11	1629483	1629483	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1629483C>T	uc001ltw.1	-	1	211	c.133G>A	c.(133-135)GTG>ATG	p.V45M		NM_001012708	NP_001012726	Q6L8H2	KRA53_HUMAN	keratin associated protein 5-3	45	11 X 4 AA repeats of C-C-X-P.					keratin filament				ovary(2)	2		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000618)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)		CAGCAGCACACGGGCTTGCAG	0.682													16	623					0	0	0.003271	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642784	1642784	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1642784G>A	uc009ycy.1	-	4	765	c.678C>T	c.(676-678)TGC>TGT	p.C226C		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	240	9 X 4 AA repeats of C-C-X-P.|6.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGTAGGGCTTGCAGCAGCTGG	0.607													50	536					0	0	0.003610	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643182	1643182	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1643182T>C	uc009ycy.1	-	1	187	c.100A>G	c.(100-102)AGC>GGC	p.S34G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	48						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACACAGCAGCTGGagccacag	0.328													31	505					0	0	0.003271	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643274	1643275	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1643274_1643275CA>AG	uc009ycy.1	-	1	94_95	c.7_8TG>CT	c.(7-9)TGT>CTT	p.C3L		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	17						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		gccggagccacagcccccacag	0.248													32	360					0	0	0.004672	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643279	1643279	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1643279C>T	uc009ycy.1	-	1	90	c.3G>A	c.(1-3)GGG>GGA	p.G1G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	15						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		agccacagcccccacagccgg	0.249													48	362					0	0	0.003610	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643369	1643369	+	Splice_Site	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1643369T>G	uc009ycy.1	-	1	1	c.-86_splice	c.e1-1			NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4							keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCAGATGAGATGGAGGTGCAG	0.493													34	533					0	0	0.003271	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651091	1651091	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1651091C>T	uc001lty.2	+	1	59	c.21C>T	c.(19-21)TCC>TCT	p.S7S		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	7						keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		gtggctgctccggaggctgtg	0.284													32	448					0	0	0.007835	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651119	1651119	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1651119C>T	uc001lty.2	+	1	87	c.49C>T	c.(49-51)CGT>TGT	p.R17C		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	17				R -> L (in Ref. 1; BAD20201 and 2; CAF31639).		keratin filament		p.R17C(1)		lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		ctgtggaggccgtggctccgg	0.174													32	405					0	0	0.003610	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651442	1651442	+	Silent	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1651442G>T	uc001lty.2	+	1	410	c.372G>T	c.(370-372)GGG>GGT	p.G124G		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	124	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCTGTGGGGGGTCCAAGGGGG	0.692													15	103					3.10202e-16	3.26584e-16	0.003610	1	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651472	1651472	+	Silent	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1651472G>T	uc001lty.2	+	1	440	c.402G>T	c.(400-402)GGG>GGT	p.G134G		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	134	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCTGTGGGGGGTCCAAGGGGG	0.697													22	128					2.47872e-24	2.61865e-24	0.002522	1	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651760	1651760	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1651760C>T	uc001lty.2	+	1	728	c.690C>T	c.(688-690)CCC>CCT	p.P230P		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	230	8 X 4 AA repeats of C-C-X-P.|8.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCTGTGTCCCCGTGTGCTGCC	0.612													14	420					0	0	0.002450	0	0
OR2AG2	338755	broad.mit.edu	37	11	6790075	6790075	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:6790075T>G	uc001meq.1	-	1	114	c.114A>C	c.(112-114)GCA>GCC	p.A38A		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGCTGGTCAGTGCCAACATGT	0.537													8	122					0	0	0.004482	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806387	6806387	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:6806387T>C	uc001mer.1	+	1	119	c.119T>C	c.(118-120)ATC>ACC	p.I40T		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTGGCCCTGATCAGCAATGGC	0.527													10	155					0	0	0.006214	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806660	6806660	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:6806660C>A	uc001mer.1	+	1	392	c.392C>A	c.(391-393)ACA>AAA	p.T131K		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CATCCTCTGACATACATGACC	0.532													6	90					1.06961e-07	1.10954e-07	0.003080	1	0
SAA2	6289	broad.mit.edu	37	11	18266970	18266970	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:18266970C>T	uc001mnz.3	-	4	360	c.323G>A	c.(322-324)AGA>AAA	p.R108K	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	108					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	ATTGGGGTCTCTGCCACTCCT	0.587													9	82					0	0	0.006214	0	0
SAA2	6289	broad.mit.edu	37	11	18266989	18266989	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:18266989T>C	uc001mnz.3	-	4	341	c.304A>G	c.(304-306)AAA>GAA	p.K102E	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	102					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	CTGCCCCATTTATTGGCAGCC	0.572													6	82					0	0	0.001168	0	0
OR8I2	120586	broad.mit.edu	37	11	55861593	55861593	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:55861593G>A	uc010rix.1	+	1	810	c.810G>A	c.(808-810)GCG>GCA	p.A270A		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TGACCCAGGCGCAGGTGGCAT	0.453													29	120					0	0	0.006320	0	0
OR5M3	219482	broad.mit.edu	37	11	56237508	56237508	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:56237508C>T	uc010rjk.1	-	1	466	c.466G>A	c.(466-468)GCA>ACA	p.A156T		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AATGTTGCTGCCAGACTCGTC	0.428													12	182					0	0	0.000978	0	0
OR5M3	219482	broad.mit.edu	37	11	56237865	56237865	+	Missense_Mutation	SNP	T	C	C	rs141778101		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:56237865T>C	uc010rjk.1	-	1	109	c.109A>G	c.(109-111)ATG>GTG	p.M37V		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTGCCCACCATGGTGATGATG	0.443													9	84					0	0	0.006214	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310834	57310834	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57310834A>T	uc009ymh.1	+	2	773	c.773A>T	c.(772-774)GAT>GTT	p.D258V		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	240										ovary(1)	1						GAGGCGGAGGATGCAGAGGAG	0.567													5	115					0	0	0.000602	0	0
OR1S2	219958	broad.mit.edu	37	11	57970708	57970708	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57970708T>C	uc010rkb.1	-	1	946	c.946A>G	c.(946-948)AAG>GAG	p.K316E		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TTGATGAGCTTTCTCAGGGCA	0.413													32	763					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57970760	57970760	+	Missense_Mutation	SNP	C	T	T	rs148257814	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57970760C>T	uc010rkb.1	-	1	894	c.894G>A	c.(892-894)ATG>ATA	p.M298I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	298	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TGAAGGGGTTCATCATGGGTG	0.468													26	722					0	0	0.004878	0	0
OR1S2	219958	broad.mit.edu	37	11	57970876	57970876	+	Missense_Mutation	SNP	T	C	C	rs143725384	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57970876T>C	uc010rkb.1	-	1	778	c.778A>G	c.(778-780)ATT>GTT	p.I260V		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AGTAATGCAATTGTCAGGTGA	0.488													23	431					0	0	0.003330	0	0
OR1S2	219958	broad.mit.edu	37	11	57970928	57970928	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57970928T>A	uc010rkb.1	-	1	726	c.726A>T	c.(724-726)TCA>TCT	p.S242S		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTGTGTGGATGATACTCCCA	0.453													34	413					0	0	0.004878	0	0
OR1S2	219958	broad.mit.edu	37	11	57970936	57970936	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57970936C>T	uc010rkb.1	-	1	718	c.718G>A	c.(718-720)GGA>AGA	p.G240R		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	240	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GATGATACTCCCAGGACAGCT	0.448													29	429					0	0	0.002836	0	0
OR1S2	219958	broad.mit.edu	37	11	57971038	57971038	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971038T>A	uc010rkb.1	-	1	616	c.616A>T	c.(616-618)ATG>TTG	p.M206L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	206	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TCATTGATCATTGTATCTGAA	0.443													21	794					0	0	0.002299	0	0
OR1S2	219958	broad.mit.edu	37	11	57971107	57971107	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971107C>T	uc010rkb.1	-	1	547	c.547G>A	c.(547-549)GAC>AAC	p.D183N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GTGTTGTGGTCACAGAAGAGC	0.473													29	868					0	0	0.007291	0	0
OR1S2	219958	broad.mit.edu	37	11	57971144	57971144	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971144A>C	uc010rkb.1	-	1	510	c.510T>G	c.(508-510)CTT>CTG	p.L170L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	170	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GGGTGTGTGTAAGAGCAATAA	0.493													19	854					0	0	0.008871	0	0
OR1S2	219958	broad.mit.edu	37	11	57971203	57971203	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971203C>G	uc010rkb.1	-	1	451	c.451G>C	c.(451-453)GCC>CCC	p.A151P		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGAACCTGGCCCGCATGAAA	0.473													93	712					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971212	57971212	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971212A>G	uc010rkb.1	-	1	442	c.442T>C	c.(442-444)TTC>CTC	p.F148L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCCGCATGAAAGTTGTATAG	0.463													61	711					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971214	57971214	+	Missense_Mutation	SNP	G	A	A	rs139923248	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971214G>A	uc010rkb.1	-	1	440	c.440C>T	c.(439-441)ACT>ATT	p.T147I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGCATGAAAGTTGTATAGTT	0.463													62	715					0	0	0.003610	0	0
OR1S2	219958	broad.mit.edu	37	11	57971255	57971256	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971255_57971256GA>AT	uc010rkb.1	-	1	398_399	c.398_399TC>AT	c.(397-399)TTC>TAT	p.F133Y		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CAAAGTGGTCGAAGGCCATGGT	0.475													33	775					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971420	57971420	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971420G>A	uc010rkb.1	-	1	234	c.234C>T	c.(232-234)TAC>TAT	p.Y78Y		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CAAAGGATAGGTAGGCAAGGA	0.448													36	713					0	0	0.004289	0	0
OR1S2	219958	broad.mit.edu	37	11	57971422	57971422	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971422A>T	uc010rkb.1	-	1	232	c.232T>A	c.(232-234)TAC>AAC	p.Y78N		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AAGGATAGGTAGGCAAGGAAG	0.453													32	714					0	0	0.002445	0	0
OR1S2	219958	broad.mit.edu	37	11	57971447	57971447	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971447G>A	uc010rkb.1	-	1	207	c.207C>T	c.(205-207)CAC>CAT	p.H69H		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	69	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ACATGGGGGTGTGAAGGTATA	0.448													32	711					0	0	0.002836	0	0
OR1S2	219958	broad.mit.edu	37	11	57971456	57971457	+	Missense_Mutation	DNP	TA	CG	CG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971456_57971457TA>CG	uc010rkb.1	-	1	197_198	c.197_198TA>CG	c.(196-198)ATA>ACG	p.I66T		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	66	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TGTGAAGGTATATATCCAAGCT	0.446													70	652					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971497	57971497	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971497C>T	uc010rkb.1	-	1	157	c.157G>A	c.(157-159)GTT>ATT	p.V53I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	53	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCGTTCCCAACCACAGTGACC	0.463													44	707					0	0	0.002522	0	0
OR1S2	219958	broad.mit.edu	37	11	57971509	57971510	+	Missense_Mutation	DNP	CA	GG	GG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971509_57971510CA>GG	uc010rkb.1	-	1	144_145	c.144_145TG>CC	c.(142-147)TATGTG>TACCTG	p.V49L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ACAGTGACCACATACATACTCA	0.46													60	694					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971553	57971553	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971553G>T	uc010rkb.1	-	1	101	c.101C>A	c.(100-102)GCT>GAT	p.A34D		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	34	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TTGATGTTCAGCCTGGTTGGA	0.433													27	586					4.62619e-21	4.88172e-21	0.004289	1	0
OR1S2	219958	broad.mit.edu	37	11	57971562	57971562	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971562G>A	uc010rkb.1	-	1	92	c.92C>T	c.(91-93)TCC>TTC	p.S31F		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	31	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AGCCTGGTTGGAGAGTCCCAG	0.443													20	544					0	0	0.002096	0	0
OR1S2	219958	broad.mit.edu	37	11	57971564	57971564	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971564G>A	uc010rkb.1	-	1	90	c.90C>T	c.(88-90)CTC>CTT	p.L30L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	30	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCTGGTTGGAGAGTCCCAGGA	0.443													30	535					0	0	0.007835	0	0
OR1S2	219958	broad.mit.edu	37	11	57971604	57971604	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971604T>C	uc010rkb.1	-	1	50	c.50A>G	c.(49-51)GAA>GGA	p.E17G		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GGTTTGGTTTTCTTGATGCAT	0.413													41	386					0	0	0.006999	0	0
OR1S2	219958	broad.mit.edu	37	11	57971623	57971623	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57971623T>C	uc010rkb.1	-	1	31	c.31A>G	c.(31-33)AGC>GGC	p.S11G		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ATATTTCTGCTGATCTGAAGA	0.408													20	336					0	0	0.008871	0	0
OR1S1	219959	broad.mit.edu	37	11	57982247	57982247	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982247G>A	uc010rkc.1	+	1	31	c.31G>A	c.(31-33)GGC>AGC	p.G11S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCTTCAGATCGGCAGAAATAT	0.388													30	284					0	0	0.006320	0	0
OR1S1	219959	broad.mit.edu	37	11	57982266	57982266	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982266G>A	uc010rkc.1	+	1	50	c.50G>A	c.(49-51)GGA>GAA	p.G17E		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	17	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ATGCATCAAGGAAACCAAACC	0.413													44	387					0	0	0.008740	0	0
OR1S1	219959	broad.mit.edu	37	11	57982321	57982321	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982321G>A	uc010rkc.1	+	1	105	c.105G>A	c.(103-105)GAG>GAA	p.E35E		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	35	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCAGGATGAGCATCAAAACC	0.438													37	785					0	0	0.004878	0	0
OR1S1	219959	broad.mit.edu	37	11	57982352	57982352	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982352G>A	uc010rkc.1	+	1	136	c.136G>A	c.(136-138)GGT>AGT	p.G46S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				GCTTTTCTTGGGTATGTACCT	0.443													46	822					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982360	57982361	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982360_57982361CC>TG	uc010rkc.1	+	1	144_145	c.144_145CC>TG	c.(142-147)TACCTG>TATGTG	p.L49V		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGGGTATGTACCTGGTCACTGT	0.45													51	843					0	0	0.004672	0	0
OR1S1	219959	broad.mit.edu	37	11	57982373	57982373	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982373A>G	uc010rkc.1	+	1	157	c.157A>G	c.(157-159)ATT>GTT	p.I53V		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	53	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				GGTCACTGTGATTGGGAACGG	0.448													54	856					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982413	57982414	+	Missense_Mutation	DNP	CG	TA	TA	rs140365237	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982413_57982414CG>TA	uc010rkc.1	+	1	197_198	c.197_198CG>TA	c.(196-198)ACG>ATA	p.T66I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	66	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCTTGGATACGTACCTTCATA	0.446													74	849					0	0	0.004672	0	0
OR1S1	219959	broad.mit.edu	37	11	57982423	57982423	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982423T>C	uc010rkc.1	+	1	207	c.207T>C	c.(205-207)CAT>CAC	p.H69H		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	69	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CGTACCTTCATACCCCCATGT	0.443													52	873					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982448	57982448	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982448A>T	uc010rkc.1	+	1	232	c.232A>T	c.(232-234)AAT>TAT	p.N78Y		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CTTCCTTGCCAATCTATCCTT	0.448													37	843					0	0	0.004878	0	0
OR1S1	219959	broad.mit.edu	37	11	57982450	57982450	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982450T>C	uc010rkc.1	+	1	234	c.234T>C	c.(232-234)AAT>AAC	p.N78N		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCCTTGCCAATCTATCCTTTG	0.448													35	841					0	0	0.004878	0	0
OR1S1	219959	broad.mit.edu	37	11	57982519	57982519	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982519G>C	uc010rkc.1	+	1	303	c.303G>C	c.(301-303)AAG>AAC	p.K101N		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	101	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTCAAACCAAGAGTCAATCCA	0.423													38	828					0	0	0.008740	0	0
OR1S1	219959	broad.mit.edu	37	11	57982522	57982522	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982522T>C	uc010rkc.1	+	1	306	c.306T>C	c.(304-306)AGT>AGC	p.S102S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	102	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AAACCAAGAGTCAATCCATCT	0.423													42	810					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982597	57982597	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982597C>T	uc010rkc.1	+	1	381	c.381C>T	c.(379-381)CTC>CTT	p.L127L		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	127	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ACAATTTGCTCTTGGGGACCA	0.448													26	797					0	0	0.006320	0	0
OR1S1	219959	broad.mit.edu	37	11	57982614	57982614	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982614A>T	uc010rkc.1	+	1	398	c.398A>T	c.(397-399)TAT>TTT	p.Y133F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	133	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ACCATGGCCTATGACCACTTT	0.453													24	809					0	0	0.005443	0	0
OR1S1	219959	broad.mit.edu	37	11	57982648	57982648	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982648T>C	uc010rkc.1	+	1	432	c.432T>C	c.(430-432)AAT>AAC	p.N144N		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	144	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				ACCCTCTGAATTATACAATTC	0.453													80	856					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982656	57982656	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982656T>C	uc010rkc.1	+	1	440	c.440T>C	c.(439-441)ATT>ACT	p.I147T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	147	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AATTATACAATTCTCATGCGG	0.448													52	879					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982658	57982658	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982658C>T	uc010rkc.1	+	1	442	c.442C>T	c.(442-444)CTC>TTC	p.L148F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	148	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TTATACAATTCTCATGCGGCC	0.448													50	880					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982667	57982667	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982667C>G	uc010rkc.1	+	1	451	c.451C>G	c.(451-453)CCC>GCC	p.P151A		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	151	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCTCATGCGGCCCAGGTTCGG	0.453													49	879					0	0	0.003610	0	0
OR1S1	219959	broad.mit.edu	37	11	57982680	57982680	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982680T>C	uc010rkc.1	+	1	464	c.464T>C	c.(463-465)ATT>ACT	p.I155T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGGTTCGGCATTTTGCTCACA	0.468													35	879					0	0	0.009718	0	0
OR1S1	219959	broad.mit.edu	37	11	57982699	57982699	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982699A>G	uc010rkc.1	+	1	483	c.483A>G	c.(481-483)TCA>TCG	p.S161S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CAGTCATCTCATGGTTCCTCA	0.478													32	828					0	0	0.004878	0	0
OR1S1	219959	broad.mit.edu	37	11	57982889	57982890	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982889_57982890AC>GT	uc010rkc.1	+	1	673_674	c.673_674AC>GT	c.(673-675)ACA>GTA	p.T225V		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	225	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CTTCCCCTTTACACTCAGCTTC	0.455													16	416					0	0	0.004672	0	0
OR1S1	219959	broad.mit.edu	37	11	57982903	57982903	+	Silent	SNP	T	C	C	rs147092977	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982903T>C	uc010rkc.1	+	1	687	c.687T>C	c.(685-687)TTT>TTC	p.F229F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	229	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCAGCTTCTTTTCCTATGTCT	0.433													41	379					0	0	0.006230	0	0
OR1S1	219959	broad.mit.edu	37	11	57982934	57982934	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982934A>G	uc010rkc.1	+	1	718	c.718A>G	c.(718-720)AGA>GGA	p.R240G		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	240	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGCTGTCCTGAGAGTATCTTC	0.438													18	397					0	0	0.006122	0	0
OR1S1	219959	broad.mit.edu	37	11	57982942	57982942	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982942T>A	uc010rkc.1	+	1	726	c.726T>A	c.(724-726)TCT>TCA	p.S242S		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TGAGAGTATCTTCCACACAGG	0.443													17	401					0	0	0.004990	0	0
OR1S1	219959	broad.mit.edu	37	11	57982994	57982994	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57982994G>A	uc010rkc.1	+	1	778	c.778G>A	c.(778-780)GTT>ATT	p.V260I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	260	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCACCTGACAGTTGTATTACT	0.478													19	427					0	0	0.003330	0	0
OR1S1	219959	broad.mit.edu	37	11	57983019	57983019	+	Missense_Mutation	SNP	T	C	C	rs141964803	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:57983019T>C	uc010rkc.1	+	1	803	c.803T>C	c.(802-804)ATT>ACT	p.I268T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	268	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TACGGAACCATTGTAGGCGTG	0.488													19	467					0	0	0.007291	0	0
AHNAK	79026	broad.mit.edu	37	11	62295315	62295315	+	Missense_Mutation	SNP	T	G	G	rs1787043	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:62295315T>G	uc001ntl.2	-	5	6874	c.6574A>C	c.(6574-6576)AAC>CAC	p.N2192H	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2192					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCTTTCAAGTTTAAGTTCACA	0.473													9	348					0	0	0.004990	0	0
EHBP1L1	254102	broad.mit.edu	37	11	65350689	65350689	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:65350689C>T	uc001oeo.3	+	9	2811	c.2546C>T	c.(2545-2547)TCA>TTA	p.S849L	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	849	Glu-rich.									central_nervous_system(1)	1						GTCGGGGGTTCAGGGATCTCA	0.562													11	45					0	0	0.001368	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276936	71276936	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71276936G>A	uc001oqt.1	+	1	328	c.303G>A	c.(301-303)AAG>AAA	p.K101K		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	101	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						GGGGCTCCAAGGGGGGCTGTG	0.692													13	405					0	0	0.003330	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71277140	71277140	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71277140G>A	uc001oqt.1	+	1	532	c.507G>A	c.(505-507)CAG>CAA	p.Q169Q		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	169	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						gctgctgccagtccagctgct	0.174													35	576					0	0	0.003610	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71277197	71277197	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71277197T>C	uc001oqt.1	+	1	589	c.564T>C	c.(562-564)TGT>TGC	p.C188C		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	188	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						cctgctgctgtcagtccagct	0.209													71	546					0	0	0.003610	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293458	71293458	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293458G>A	uc001oqu.2	-	1	464	c.426C>T	c.(424-426)TGC>TGT	p.C142C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	142	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						agctggactggcagcagcagg	0.219													32	498					0	0	0.002445	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293474	71293474	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293474A>C	uc001oqu.2	-	1	448	c.410T>G	c.(409-411)TTC>TGC	p.F137C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	137	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						gcagggcttgaagcagctaga	0.194													51	457					0	0	0.003610	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293626	71293626	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293626G>A	uc001oqu.2	-	1	296	c.258C>T	c.(256-258)AAC>AAT	p.N86N		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	86	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						GCTTACAGCAGTTGGACTGGG	0.353													17	649					0	0	0.003330	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293630	71293630	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293630G>C	uc001oqu.2	-	1	292	c.254C>G	c.(253-255)TCC>TGC	p.S85C		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	85	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						ACAGCAGTTGGACTGGGAGCA	0.358													16	635					0	0	0.003330	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293670	71293670	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293670T>C	uc001oqu.2	-	1	252	c.214A>G	c.(214-216)AGC>GGC	p.S72G		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	72	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						CCCTTGGAGCTCCCACAAGAG	0.478													90	731					0	0	0.003610	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293848	71293848	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71293848A>G	uc001oqu.2	-	1	74	c.36T>C	c.(34-36)TCT>TCC	p.S12S		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	12						keratin filament					0						CCCCACAGCCAGAGCCACAGC	0.637													44	417					0	0	0.003610	0	0
PAK1	5058	broad.mit.edu	37	11	77070009	77070009	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:77070009C>A	uc001oyh.3	-	6	1064	c.531G>T	c.(529-531)GAG>GAT	p.E177D	PAK1_uc010rso.1_Missense_Mutation_p.E79D|PAK1_uc001oyg.3_Missense_Mutation_p.E177D|PAK1_uc001oyi.1_Missense_Mutation_p.E177D|PAK1_uc010rsn.1_Translation_Start_Site	NM_002576	NP_002567	Q13153	PAK1_HUMAN	p21-activated kinase 1 isoform 2	177	Interaction with CRIPAK.				apoptosis|axon guidance|cytoskeleton organization|ER-nucleus signaling pathway|positive regulation of JUN kinase activity|positive regulation of peptidyl-serine phosphorylation|protein autophosphorylation|T cell costimulation|T cell receptor signaling pathway	cytosol|focal adhesion|Golgi apparatus	ATP binding|collagen binding|protein binding|protein serine/threonine kinase activity			skin(2)|stomach(1)|lung(1)	4	all_cancers(14;1.75e-18)					catcatcatcctcatcTTCTG	0.448													7	68					1.58986e-06	1.63626e-06	0.008291	1	0
C11orf63	79864	broad.mit.edu	37	11	122828191	122828191	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:122828191C>T	uc001pym.2	+	8	2428	c.2131C>T	c.(2131-2133)CGG>TGG	p.R711W		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	711										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		TGCTATCCCTCGGCAGAAGGT	0.289													7	43					0	0	0.001984	0	0
OR10G9	219870	broad.mit.edu	37	11	123894320	123894320	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123894320G>A	uc010sad.1	+	1	601	c.601G>A	c.(601-603)GAC>AAC	p.D201N		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CATCTTTGTGGACATTGGGCT	0.552													11	189					0	0	0.001368	0	0
OR10G8	219869	broad.mit.edu	37	11	123900635	123900635	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900635C>T	uc001pzp.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGCTCTATTTCTTTCACTTCC	0.532													14	305					0	0	0.001855	0	0
OR10G8	219869	broad.mit.edu	37	11	123900638	123900638	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900638T>C	uc001pzp.1	+	1	309	c.309T>C	c.(307-309)TTT>TTC	p.F103F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCTATTTCTTTCACTTCCTAG	0.537													14	314					0	0	0.001855	0	0
OR10G8	219869	broad.mit.edu	37	11	123900685	123900685	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900685G>A	uc001pzp.1	+	1	356	c.356G>A	c.(355-357)TGT>TAT	p.C119Y		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GTCATGTCCTGTGATCGCTAC	0.562													23	361					0	0	0.001882	0	0
OR10G8	219869	broad.mit.edu	37	11	123900727	123900727	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900727G>A	uc001pzp.1	+	1	398	c.398G>A	c.(397-399)AGC>AAC	p.S133N		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGTACACCAGCATGATGACT	0.547													24	389					0	0	0.002780	0	0
OR10G8	219869	broad.mit.edu	37	11	123900752	123900752	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900752T>C	uc001pzp.1	+	1	423	c.423T>C	c.(421-423)ACT>ACC	p.T141T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GCTCGTGTACTCTTCTGGCCA	0.562													15	403					0	0	0.008871	0	0
OR10G8	219869	broad.mit.edu	37	11	123900765	123900765	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900765A>G	uc001pzp.1	+	1	436	c.436A>G	c.(436-438)AGC>GGC	p.S146G		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCTGGCCACCAGCACTTGGCT	0.547													27	389					0	0	0.008361	0	0
OR10G8	219869	broad.mit.edu	37	11	123900804	123900804	+	Missense_Mutation	SNP	G	A	A	rs147374446	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900804G>A	uc001pzp.1	+	1	475	c.475G>A	c.(475-477)GCC>ACC	p.A159T		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGCTGTCCAGGCCATATTGAC	0.557													44	431					0	0	0.002522	0	0
OR10G8	219869	broad.mit.edu	37	11	123900860	123900860	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900860G>C	uc001pzp.1	+	1	531	c.531G>C	c.(529-531)TTG>TTC	p.L177F		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGCACTATTTGTGTGATGCAC	0.532													20	478					0	0	0.004656	0	0
OR10G8	219869	broad.mit.edu	37	11	123900910	123900910	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900910T>A	uc001pzp.1	+	1	581	c.581T>A	c.(580-582)ATA>AAA	p.I194K		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACCTCAGCCATAGAGACTGTC	0.512													18	359					0	0	0.001882	0	0
OR10G8	219869	broad.mit.edu	37	11	123900965	123900965	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123900965G>C	uc001pzp.1	+	1	636	c.636G>C	c.(634-636)CTG>CTC	p.L212L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GCTTTGTCCTGATAGTGCTGT	0.547													17	245					0	0	0.003954	0	0
OR10G8	219869	broad.mit.edu	37	11	123901027	123901027	+	Missense_Mutation	SNP	A	G	G	rs148074790	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123901027A>G	uc001pzp.1	+	1	698	c.698A>G	c.(697-699)AAG>AGG	p.K233R		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TCAGAGGGGAAGCACAGAGCC	0.547													32	186					0	0	0.008361	0	0
OR10G8	219869	broad.mit.edu	37	11	123901199	123901199	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123901199G>A	uc001pzp.1	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACACCCTGAGGAACAAGGAGG	0.408													16	233					0	0	0.007413	0	0
OR10G8	219869	broad.mit.edu	37	11	123901211	123901211	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123901211G>A	uc001pzp.1	+	1	882	c.882G>A	c.(880-882)GTG>GTA	p.V294V		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V294V(1)		ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ACAAGGAGGTGAAGAAAGCTC	0.378													17	216					0	0	0.006122	0	0
OR10G7	390265	broad.mit.edu	37	11	123908827	123908827	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123908827T>C	uc001pzq.1	-	1	882	c.882A>G	c.(880-882)GTA>GTG	p.V294V		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GAGCTTTCTTTACCTCCTTGT	0.438													23	126					0	0	0.002299	0	0
OR10G7	390265	broad.mit.edu	37	11	123908839	123908839	+	Silent	SNP	T	C	C	rs143478590		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123908839T>C	uc001pzq.1	-	1	870	c.870A>G	c.(868-870)AGA>AGG	p.R290R		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	290	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCTCCTTGTTTCTCAGGGTGT	0.463													17	134					0	0	0.004990	0	0
OR10G7	390265	broad.mit.edu	37	11	123909011	123909011	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123909011C>T	uc001pzq.1	-	1	698	c.698G>A	c.(697-699)AGG>AAG	p.R233K		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGCTCTGTGCCTCCCCTCTGA	0.567													23	234					0	0	0.004656	0	0
OR10G7	390265	broad.mit.edu	37	11	123909400	123909400	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123909400G>A	uc001pzq.1	-	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCAGGAAGTGGAAAAAATAGA	0.537													22	415					0	0	0.010504	0	0
OR10G7	390265	broad.mit.edu	37	11	123909403	123909403	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:123909403A>G	uc001pzq.1	-	1	306	c.306T>C	c.(304-306)TTT>TTC	p.F102F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGAAGTGGAAAAAATAGAGCT	0.532													24	423					0	0	0.002299	0	0
ROBO3	64221	broad.mit.edu	37	11	124740158	124740158	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:124740158T>C	uc001qbc.2	+	5	1056	c.864T>C	c.(862-864)CGT>CGC	p.R288R		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	288	Ig-like C2-type 3.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CCCCACCTCGTCTACGCTGGC	0.587													5	29					0	0	0.000602	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418													5	80					0	0	0.000602	0	0
SPSB2	84727	broad.mit.edu	37	12	6981745	6981745	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:6981745G>A	uc001qrl.2	-	2	477	c.321C>T	c.(319-321)GGC>GGT	p.G107G	SPSB2_uc001qrm.2_Silent_p.G107G|SPSB2_uc010sfp.1_Silent_p.G107G|LRRC23_uc001qrn.1_5'Flank	NM_001146316	NP_001139788	Q99619	SPSB2_HUMAN	splA/ryanodine receptor domain and SOCS box	107	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding			kidney(1)	1						CCGTGGCCACGCCCACCACGG	0.701											OREG0021639	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	97					0	0	0.008291	0	0
PRB4	5545	broad.mit.edu	37	12	11461798	11461798	+	Missense_Mutation	SNP	C	G	G	rs77336955		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:11461798C>G	uc001qzf.1	-	3	153	c.119G>C	c.(118-120)CGC>CCC	p.R40P	PRB4_uc001qzt.2_Missense_Mutation_p.R40P	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	40	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|1.					extracellular region				ovary(1)	1						TCCTTGTGGGCGTCGTCCTTC	0.552										HNSCC(22;0.051)			24	659					0	0	0.003610	0	0
MIR614	693199	broad.mit.edu	37	12	13068730	13068730	+	5'Flank	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:13068730A>G	hsa-mir-614|MI0003627	+						uc001rbb.3_RNA																	0						gattacaggcatgagccaccg	0.234													13	149					0	0	0.006320	0	0
MIR614	693199	broad.mit.edu	37	12	13068740	13068740	+	5'Flank	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:13068740G>A	hsa-mir-614|MI0003627	+						uc001rbb.3_RNA																	0						atgagccaccgcgcccggccC	0.269													9	185					0	0	0.006122	0	0
SYT10	341359	broad.mit.edu	37	12	33535418	33535418	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:33535418T>A	uc001rll.1	-	5	1533	c.1236A>T	c.(1234-1236)CGA>CGT	p.R412R	SYT10_uc009zju.1_Silent_p.R222R	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	412	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTTTAATCTTCGACCTTCAC	0.348													5	43					0	0	0.001168	0	0
KRT81	3887	broad.mit.edu	37	12	52681014	52681014	+	Silent	SNP	G	A	A	rs140192619		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52681014G>A	uc001sab.2	-	7	1169	c.1119C>T	c.(1117-1119)GGC>GGT	p.G373G	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	373	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTGCAGGGCGCCCTCCAGCT	0.642													28	198					0	0	0.006320	0	0
KRT81	3887	broad.mit.edu	37	12	52681089	52681089	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52681089G>A	uc001sab.2	-	7	1094	c.1044C>T	c.(1042-1044)GCC>GCT	p.A348A	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	348	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGCCACCGCGGCCTCCAGCT	0.602													7	103					0	0	0.003080	0	0
KRT81	3887	broad.mit.edu	37	12	52681104	52681104	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52681104G>A	uc001sab.2	-	7	1079	c.1029C>T	c.(1027-1029)AAC>AAT	p.N343N	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	343	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCAGCTTGGAGTTCTGAAGAG	0.612													8	84					0	0	0.003080	0	0
KRT86	3892	broad.mit.edu	37	12	52695727	52695727	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52695727C>G	uc010snq.1	+	2	160	c.27C>G	c.(25-27)GGC>GGG	p.G9G	KRT86_uc009zmg.2_Silent_p.G9G|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.G9G	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	9	Head.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		ACTGTGGTGGCCGCGCCTTCA	0.657													11	282					0	0	0.006122	0	0
KRT86	3892	broad.mit.edu	37	12	52699467	52699467	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52699467G>A	uc010snq.1	+	7	1054	c.921G>A	c.(919-921)ACG>ACA	p.T307T	KRT86_uc009zmg.2_Silent_p.T307T|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Silent_p.T307T	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	307	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGAAGGCCACGGTGATCAGGC	0.572													7	129					0	0	0.004482	0	0
KRT83	3889	broad.mit.edu	37	12	52709724	52709724	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52709724A>G	uc001saf.2	-	7	1278	c.1215T>C	c.(1213-1215)GAT>GAC	p.D405D		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	405	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CGATCTCGATATCCAGGCCTA	0.617													6	142					0	0	0.001168	0	0
KRT83	3889	broad.mit.edu	37	12	52710276	52710276	+	Silent	SNP	G	A	A	rs143467763	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52710276G>A	uc001saf.2	-	6	1080	c.1017C>T	c.(1015-1017)GCC>GCT	p.A339A		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	339	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTCCACCTCGGCTGTCAGCC	0.597													7	125					0	0	0.001984	0	0
KRT83	3889	broad.mit.edu	37	12	52710279	52710279	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52710279T>C	uc001saf.2	-	6	1077	c.1014A>G	c.(1012-1014)ACA>ACG	p.T338T		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	338	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CCACCTCGGCTGTCAGCCTCT	0.602													17	117					0	0	0.008871	0	0
KRT83	3889	broad.mit.edu	37	12	52710357	52710357	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52710357T>C	uc001saf.2	-	6	999	c.936A>G	c.(934-936)ACA>ACG	p.T312T		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	312	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCTGATCACTGTGGCCTTCA	0.547													9	85					0	0	0.001855	0	0
KRT83	3889	broad.mit.edu	37	12	52710798	52710798	+	Missense_Mutation	SNP	T	C	C	rs150867374	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:52710798T>C	uc001saf.2	-	5	823	c.760A>G	c.(760-762)ATT>GTT	p.I254V		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	254	Rod.|Coil 1B.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GATTGGAGAATGCGGATCTCC	0.537													8	178					0	0	0.003080	0	0
KRT1	3848	broad.mit.edu	37	12	53073747	53073747	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:53073747A>C	uc001sau.1	-	1	445	c.386T>G	c.(385-387)TTT>TGT	p.F129C	KRT1_uc001sav.1_Missense_Mutation_p.F129C	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	129	Head.|Gly/Phe/Ser-rich.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						acctccaccaaaaccaccacc	0.184													4	38					0	0	0.000602	0	0
OR6C6	283365	broad.mit.edu	37	12	55688299	55688299	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:55688299T>A	uc010sph.1	-	1	718	c.718A>T	c.(718-720)ACT>TCT	p.T240S		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						ATGTGGGAAGTACAGGTGGAA	0.388													7	60					0	0	0.004482	0	0
OR6C6	283365	broad.mit.edu	37	12	55688546	55688547	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:55688546_55688547TG>AA	uc010sph.1	-	1	470_471	c.470_471CA>TT	c.(469-471)CCA>CTT	p.P157L		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						CCATGACCAATGGGGGAAATAT	0.416													7	73					0	0	0.004672	0	0
MIR619	693204	broad.mit.edu	37	12	109230761	109230761	+	RNA	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:109230761T>C	hsa-mir-619|MI0003633	-			c.22T>C			SSH1_uc001tnm.2_Intron|SSH1_uc001tnn.3_Intron																	0						aatcccagcattttgggaggc	0													5	25					0	0	0.001855	0	0
MIR619	693204	broad.mit.edu	37	12	109230772	109230772	+	RNA	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:109230772T>C	hsa-mir-619|MI0003633	-			c.11T>C			SSH1_uc001tnm.2_Intron|SSH1_uc001tnn.3_Intron																	0						tttgggaggctgaggtgggcg	0													4	19					0	0	0.004482	0	0
UBC	7316	broad.mit.edu	37	12	125397435	125397435	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:125397435G>A	uc001ugs.3	-	2	1331	c.883C>T	c.(883-885)CTG>TTG	p.L295L	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Silent_p.L295L|UBC_uc001ugt.2_Silent_p.L295L|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Silent_p.L143L	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	295	Ubiquitin-like 4.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		ACCAGGTGCAGGGTAGACTCT	0.547													5	49					0	0	0.004482	0	0
UBC	7316	broad.mit.edu	37	12	125397490	125397490	+	Silent	SNP	C	T	T	rs11537764		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:125397490C>T	uc001ugs.3	-	2	1276	c.828G>A	c.(826-828)AAG>AAA	p.K276K	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Silent_p.K276K|UBC_uc001ugt.2_Silent_p.K276K|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Silent_p.K124K	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	276	Ubiquitin-like 4.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		CTTCCAGCTGCTTTCCGGCAA	0.532													7	84					0	0	0.003080	0	0
FAM123A	219287	broad.mit.edu	37	13	25744294	25744294	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr13:25744294G>C	uc001uqb.2	-	1	1564	c.1464C>G	c.(1462-1464)GTC>GTG	p.V488V	FAM123A_uc001uqa.2_Silent_p.V369V|FAM123A_uc001uqc.2_Silent_p.V369V	NM_152704	NP_689917	Q8N7J2	F123A_HUMAN	hypothetical protein LOC219287 isoform 1	488										ovary(2)|large_intestine(1)|lung(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TCCTGCGCTTGACCGAGGACG	0.652													7	38					0	0	0.001984	0	0
PCDH17	27253	broad.mit.edu	37	13	58208141	58208141	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr13:58208141G>A	uc001vhq.1	+	1	2353	c.1461G>A	c.(1459-1461)CCG>CCA	p.P487P	PCDH17_uc010aec.1_Silent_p.P487P	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	487	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ACAACATCCCGGGAGAGTACC	0.592													15	22					0	0	0.002450	0	0
PCDH9	5101	broad.mit.edu	37	13	67802144	67802144	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr13:67802144T>C	uc001vik.2	-	2	1121	c.429A>G	c.(427-429)CCA>CCG	p.P143P	PCDH9_uc001vil.2_Silent_p.P143P|PCDH9_uc010thl.1_Silent_p.P143P|PCDH9_uc001vin.3_Silent_p.P143P	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	143	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TGACAGGAGATGGAAACATGG	0.408													9	42					0	0	0.004482	0	0
SRP54	6729	broad.mit.edu	37	14	35482670	35482670	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:35482670G>T	uc001wso.2	+	9	1106	c.755G>T	c.(754-756)GGC>GTC	p.G252V	SRP54_uc010tpp.1_Missense_Mutation_p.G203V|SRP54_uc010tpq.1_Missense_Mutation_p.G188V	NM_003136	NP_003127	P61011	SRP54_HUMAN	signal recognition particle 54kDa isoform 1	252	G-domain.				GTP catabolic process|response to drug|SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition|SRP-dependent cotranslational protein targeting to membrane, translocation	cytosol|nuclear speck|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|drug binding|endoplasmic reticulum signal peptide binding|GDP binding|GTP binding|nucleoside-triphosphatase activity|ribonucleoprotein binding			ovary(1)	1	Breast(36;0.0545)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;2.48e-05)|Lung(238;3.13e-05)|Epithelial(34;0.0314)|all cancers(34;0.0797)|BRCA - Breast invasive adenocarcinoma(188;0.243)	GBM - Glioblastoma multiforme(112;0.0396)		AAACTTGATGGCCATGCAAAA	0.433													7	18					0.00198382	0.0020079	0.001984	1	0
FRMD6	122786	broad.mit.edu	37	14	52156575	52156575	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:52156575T>C	uc001wzd.2	+	2	306	c.21T>C	c.(19-21)CAT>CAC	p.H7H	FRMD6_uc001wzb.2_Silent_p.H7H|FRMD6_uc001wzc.2_Silent_p.H7H	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	7						cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					TGAATTTTCATAACAACAGAG	0.458													5	67					0	0	0.001855	0	0
DCAF5	8816	broad.mit.edu	37	14	69522018	69522018	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:69522018G>A	uc001xkp.2	-	9	1604	c.1385C>T	c.(1384-1386)TCG>TTG	p.S462L	DCAF5_uc001xkq.2_Missense_Mutation_p.S461L	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	462						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						CAATGAGGCCGAAGACTCTGA	0.612													10	62					0	0	0.006214	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713444	70713445	+	Missense_Mutation	DNP	TG	CA	CA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:70713444_70713445TG>CA	uc010ttg.1	-	1	1074_1075	c.423_424CA>TG	c.(421-426)TACATT>TATGTT	p.I142V		NR_003951				SubName: Full=ADAM21-like protein;												0						ATTCCTGCAATGTAGGCTAGGC	0.411													5	79					0	0	0.004672	0	0
TTC7B	145567	broad.mit.edu	37	14	91044553	91044553	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:91044553C>T	uc001xyp.2	-	19	2329	c.2207G>A	c.(2206-2208)CGC>CAC	p.R736H	TTC7B_uc001xyo.2_Missense_Mutation_p.R180H|TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	736	TPR 9.						binding			ovary(2)	2		Melanoma(154;0.222)				AATCTGGCCGCGCATGTAGAG	0.592													6	59					0	0	0.001984	0	0
CLMN	79789	broad.mit.edu	37	14	95669606	95669606	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:95669606A>G	uc001yef.2	-	9	2196	c.2080T>C	c.(2080-2082)TGT>CGT	p.C694R		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	694						integral to membrane	actin binding				0				Epithelial(152;0.193)		AAGCTGACACAGCTGCTTGGG	0.567													8	84					0	0	0.006214	0	0
GATM	2628	broad.mit.edu	37	15	45668877	45668877	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:45668877G>A	uc001zvc.2	-	2	539	c.210C>T	c.(208-210)AAC>AAT	p.N70N	GATM_uc001zvb.2_Translation_Start_Site|GATM_uc010uev.1_Silent_p.N123N	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	70					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	GGTCCCATTCGTTGTAAGAAG	0.552													9	104					0	0	0.004482	0	0
WASH3P	374666	broad.mit.edu	37	15	102515335	102515335	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:102515335C>G	uc002cdi.2	+	9	1979	c.559C>G	c.(559-561)CTG>GTG	p.L187V	WASH3P_uc002cdl.2_Missense_Mutation_p.L187V|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.L187V|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GGAGCGAAAGCTGGAGAAGAA	0.652													6	31					0	0	0.001168	0	0
TPSAB1	7177	broad.mit.edu	37	16	1291244	1291244	+	Missense_Mutation	SNP	A	G	G	rs150845192		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:1291244A>G	uc002ckz.2	+	3	204	c.152A>G	c.(151-153)CAC>CGC	p.H51R	TPSAB1_uc010uux.1_5'UTR	NM_003294	NP_003285	Q15661	TRYB1_HUMAN	tryptase alpha/beta 1 precursor	51	Peptidase S1.				defense response|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CTGAGAGTCCACGGCCCATAC	0.711													15	130					0	0	0.004990	0	0
TPSD1	23430	broad.mit.edu	37	16	1306557	1306557	+	Silent	SNP	G	T	T	rs2401932		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:1306557G>T	uc002clb.1	+	2	132	c.123G>T	c.(121-123)GGG>GGT	p.G41G	TPSD1_uc010brm.1_5'UTR	NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	41	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				TTGTTGGGGGGCAGGAGGCCC	0.697													19	322					2.32416e-17	2.44972e-17	0.002299	1	0
CLDN9	9080	broad.mit.edu	37	16	3063540	3063540	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063540G>C	uc010uwo.1	+	1	1084	c.177G>C	c.(175-177)ACG>ACC	p.T59T		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	59	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCAGAGCACGGGCCAGATGC	0.662													35	344					0	0	0.002836	0	0
CLDN9	9080	broad.mit.edu	37	16	3063579	3063579	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063579T>G	uc010uwo.1	+	1	1123	c.216T>G	c.(214-216)GCT>GCG	p.A72A		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	72	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CACTGCTGGCTCTGCCGCAGG	0.657													18	290					0	0	0.006122	0	0
CLDN9	9080	broad.mit.edu	37	16	3063600	3063600	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063600C>T	uc010uwo.1	+	1	1144	c.237C>T	c.(235-237)GCC>GCT	p.A79A		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	79	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						ACCTGCAGGCCGCACGTGCCC	0.647													22	261					0	0	0.010504	0	0
CLDN9	9080	broad.mit.edu	37	16	3063630	3063631	+	Missense_Mutation	DNP	GC	TG	TG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063630_3063631GC>TG	uc010uwo.1	+	1	1174_1175	c.267_268GC>TG	c.(265-270)CTGCTG>CTTGTG	p.L90V		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	90	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TTGCCCTCCTGCTGGCCCTGCT	0.653													26	289					0	0	0.004672	0	0
CLDN9	9080	broad.mit.edu	37	16	3063768	3063768	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063768T>C	uc010uwo.1	+	1	1312	c.405T>C	c.(403-405)CCT>CCC	p.P135P		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	135	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCTCATCCCTGTGTGCTGGA	0.667													16	434					0	0	0.006122	0	0
CLDN9	9080	broad.mit.edu	37	16	3063786	3063786	+	Silent	SNP	C	T	T	rs150998619		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063786C>T	uc010uwo.1	+	1	1330	c.423C>T	c.(421-423)CAC>CAT	p.H141H		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	141	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGACGGCGCACGCCATCATCC	0.672													20	346					0	0	0.008871	0	0
CLDN9	9080	broad.mit.edu	37	16	3063807	3063807	+	Silent	SNP	C	T	T	rs141963379		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063807C>T	uc010uwo.1	+	1	1351	c.444C>T	c.(442-444)TAC>TAT	p.Y148Y		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	148	Extracellular (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						AGGACTTCTACAACCCCCTGG	0.687													20	246					0	0	0.008871	0	0
CLDN9	9080	broad.mit.edu	37	16	3063859	3063859	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3063859C>T	uc010uwo.1	+	1	1403	c.496C>T	c.(496-498)CTG>TTG	p.L166L		NM_020982	NP_066192	O95484	CLD9_HUMAN	claudin 9	166	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CTCCCTCTACCTGGGCTGGGC	0.721													10	133					0	0	0.000978	0	0
CLDN6	9074	broad.mit.edu	37	16	3065705	3065705	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3065705G>C	uc002csu.3	-	2	378	c.318C>G	c.(316-318)ACC>ACG	p.T106T		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	106	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CCTCCACACAGGTGGTACACT	0.612													14	207					0	0	0.002450	0	0
CLDN6	9074	broad.mit.edu	37	16	3065807	3065807	+	Silent	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3065807C>A	uc002csu.3	-	2	276	c.216G>T	c.(214-216)GCG>GCT	p.A72A		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	72	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						CCTGTGGCAGCGCCAGCAGTG	0.642													17	336					1.99824e-07	2.06815e-07	0.004990	1	0
CLDN6	9074	broad.mit.edu	37	16	3065846	3065846	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3065846G>C	uc002csu.3	-	2	237	c.177C>G	c.(175-177)ACC>ACG	p.T59T		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	59	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GCATCTGGCCGGTGCTCTGCA	0.642													25	394					0	0	0.005443	0	0
CLDN6	9074	broad.mit.edu	37	16	3065921	3065921	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3065921A>G	uc002csu.3	-	2	162	c.102T>C	c.(100-102)GCT>GCC	p.A34A		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	34	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGCCGATGAAAGCGGTCACCT	0.632													22	406					0	0	0.007291	0	0
LOC81691	81691	broad.mit.edu	37	16	20857563	20857563	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:20857563G>A	uc002dhv.2	+	19	2408	c.2145G>A	c.(2143-2145)CCG>CCA	p.P715P	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Silent_p.P684P|LOC81691_uc002dhw.2_Silent_p.P458P|LOC81691_uc002dhy.3_Silent_p.P715P	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	715						nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						TGGACCACCCGAAGATAGCAG	0.552													39	193					0	0	0.009718	0	0
DNAH3	55567	broad.mit.edu	37	16	21123040	21123040	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:21123040G>A	uc010vbe.1	-	14	2006	c.2006C>T	c.(2005-2007)ACG>ATG	p.T669M	DNAH3_uc002die.2_Missense_Mutation_p.T609M	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	669	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATTTAGGGCCGTAGCATCAAG	0.428													10	36					0	0	0.008291	0	0
RNF40	9810	broad.mit.edu	37	16	30779676	30779676	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:30779676C>T	uc002dzq.2	+	13	1927	c.1804C>T	c.(1804-1806)CGG>TGG	p.R602W	RNF40_uc010caa.2_Missense_Mutation_p.R602W|RNF40_uc010cab.2_Missense_Mutation_p.R502W|RNF40_uc010vfa.1_5'UTR|RNF40_uc002dzr.2_Missense_Mutation_p.R602W|RNF40_uc010vfb.1_Missense_Mutation_p.R294W|RNF40_uc010vfc.1_5'UTR	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	602					histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			CCCTTCCTCCCGGGGCCGAGA	0.632													8	17					0	0	0.006214	0	0
ITGAX	3687	broad.mit.edu	37	16	31374517	31374518	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:31374517_31374518AC>GT	uc002ebu.1	+	14	1599_1600	c.1532_1533AC>GT	c.(1531-1533)TAC>TGT	p.Y511C	ITGAX_uc002ebt.2_Missense_Mutation_p.Y511C|ITGAX_uc010vfk.1_Missense_Mutation_p.Y161C	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	511	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTGTTCTCTACGGGGAGCAGG	0.644													28	890					0	0	0.004672	0	0
ITGAX	3687	broad.mit.edu	37	16	31374542	31374542	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:31374542T>C	uc002ebu.1	+	14	1624	c.1557T>C	c.(1555-1557)GGT>GGC	p.G519G	ITGAX_uc002ebt.2_Silent_p.G519G|ITGAX_uc010vfk.1_Silent_p.G169G	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	519	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACCCCTGGGGTCGCTTTGGGG	0.637													28	862					0	0	0.009535	0	0
ITGAX	3687	broad.mit.edu	37	16	31374544	31374544	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:31374544G>A	uc002ebu.1	+	14	1626	c.1559G>A	c.(1558-1560)CGC>CAC	p.R520H	ITGAX_uc002ebt.2_Missense_Mutation_p.R520H|ITGAX_uc010vfk.1_Missense_Mutation_p.R170H	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	520	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCCTGGGGTCGCTTTGGGGCG	0.637													36	867					0	0	0.004878	0	0
ITGAX	3687	broad.mit.edu	37	16	31374554	31374554	+	Silent	SNP	G	A	A	rs144979651		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:31374554G>A	uc002ebu.1	+	14	1636	c.1569G>A	c.(1567-1569)GCG>GCA	p.A523A	ITGAX_uc002ebt.2_Silent_p.A523A|ITGAX_uc010vfk.1_Silent_p.A173A	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	523	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTTTGGGGCGGCTCTGACAG	0.617													30	864					0	0	0.002445	0	0
ZNF267	10308	broad.mit.edu	37	16	31927528	31927528	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:31927528G>T	uc002ecs.3	+	4	2167	c.1958G>T	c.(1957-1959)AGT>ATT	p.S653I		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	653	C2H2-type 12.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						CATCAGAGAAGTCATACTGGA	0.443													6	77					1.06961e-07	1.10954e-07	0.003080	1	0
ABCC11	85320	broad.mit.edu	37	16	48258336	48258336	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:48258336G>A	uc002eff.1	-	4	750	c.400C>T	c.(400-402)CAC>TAC	p.H134Y	ABCC11_uc002efg.1_Missense_Mutation_p.H134Y|ABCC11_uc002efh.1_Missense_Mutation_p.H134Y|ABCC11_uc010vgl.1_Missense_Mutation_p.H134Y	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	134	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				CAAAGGCGGTGAAGCCTTGAA	0.448									Cerumen_Type				8	46					0	0	0.003080	0	0
TOX3	27324	broad.mit.edu	37	16	52502475	52502475	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:52502475A>T	uc002egw.2	-	2	270	c.99T>A	c.(97-99)AAT>AAA	p.N33K	TOX3_uc010vgt.1_Missense_Mutation_p.N29K|TOX3_uc010vgu.1_Missense_Mutation_p.N33K	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	33	Poly-Asn.				apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						TATAGTTATTATTATTTCCAA	0.363													6	41					0	0	0.001168	0	0
MT1G	4495	broad.mit.edu	37	16	56700862	56700863	+	Missense_Mutation	DNP	CA	GG	GG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56700862_56700863CA>GG	uc002eju.1	-	3	186_187	c.114_115TG>CC	c.(112-117)CCTGTG>CCCCTG	p.V39L	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	40	Alpha.						metal ion binding|protein binding				0						GCACAGCCCACAGGGCAGCAGG	0.614													56	878					0	0	0.004672	0	0
MT1G	4495	broad.mit.edu	37	16	56700869	56700869	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56700869G>A	uc002eju.1	-	3	180	c.108C>T	c.(106-108)TGC>TGT	p.C36C	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	37	Alpha.	Divalent metal cation; cluster A.					metal ion binding|protein binding				0						CCACAGGGCAGCAGGAGCAGC	0.627													44	847					0	0	0.007835	0	0
MT1G	4495	broad.mit.edu	37	16	56701251	56701251	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56701251C>T	uc002eju.1	-	2	139	c.67G>A	c.(67-69)GAG>AAG	p.E23K	MT1G_uc002ejv.1_RNA|MT1H_uc002ejw.2_5'Flank	NM_005950	NP_005941	P13640	MT1G_HUMAN	metallothionein 1G	24	Beta.						metal ion binding|protein binding				0						CATTTGCACTCTTTGCACTTG	0.567													48	808					0	0	0.003610	0	0
MT1H	4496	broad.mit.edu	37	16	56704421	56704421	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56704421G>T	uc002ejw.2	+	2	103	c.32G>T	c.(31-33)GGC>GTC	p.G11V	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	11	Beta.						metal ion binding|protein binding				0						CTTGCAGGTGGCTCCTGCGCC	0.557													68	759					3.13682e-115	3.33696e-115	0.003610	1	0
MT1H	4496	broad.mit.edu	37	16	56704429	56704429	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56704429G>A	uc002ejw.2	+	2	111	c.40G>A	c.(40-42)GCC>ACC	p.A14T	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	14	Beta.						metal ion binding|protein binding				0						TGGCTCCTGCGCCTGCGCCGG	0.547													59	804					0	0	0.003610	0	0
MT1H	4496	broad.mit.edu	37	16	56704874	56704874	+	Silent	SNP	G	A	A	rs138528873		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56704874G>A	uc002ejw.2	+	3	230	c.159G>A	c.(157-159)GCG>GCA	p.A53A	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	53	Alpha.						metal ion binding|protein binding				0						GCAAAGGGGCGTCAGAGAAGT	0.532													59	756					0	0	0.003610	0	0
MT1H	4496	broad.mit.edu	37	16	56704877	56704877	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56704877A>G	uc002ejw.2	+	3	233	c.162A>G	c.(160-162)TCA>TCG	p.S54S	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	54	Alpha.						metal ion binding|protein binding				0						AAGGGGCGTCAGAGAAGTGCA	0.537													58	739					0	0	0.003610	0	0
MT1H	4496	broad.mit.edu	37	16	56704895	56704895	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:56704895T>C	uc002ejw.2	+	3	251	c.180T>C	c.(178-180)TGT>TGC	p.C60C	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	60	Alpha.	Divalent metal cation; cluster A.					metal ion binding|protein binding				0						GCAGCTGCTGTGCCTGATGTC	0.527													44	883					0	0	0.004289	0	0
GPR97	222487	broad.mit.edu	37	16	57713095	57713095	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:57713095C>T	uc002emh.2	+	5	602	c.499C>T	c.(499-501)CGG>TGG	p.R167W	GPR97_uc010vhv.1_Missense_Mutation_p.R47W|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_5'Flank	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	167	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						ACAGGGCCCCCGGCTCGGCCT	0.632													9	74					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	16	70253847	70253847	+	RNA	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:70253847C>G	uc002eyl.1	-	5		c.1644G>C								Homo sapiens cDNA FLJ46379 fis, clone THYMU2003803, moderately similar to Homo sapiens PI-3-kinase-related kinase SMG-1 (SMG1).																		TCACATCATGCTGTTTACATG	0.378													3	8					0	0	0.004672	0	0
USP10	9100	broad.mit.edu	37	16	84806242	84806242	+	Silent	SNP	G	A	A	rs13335256		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:84806242G>A	uc002fii.2	+	12	2236	c.2094G>A	c.(2092-2094)CAG>CAA	p.Q698Q	USP10_uc010voe.1_Silent_p.Q702Q|USP10_uc010vof.1_Silent_p.Q260Q|USP10_uc002fij.2_Silent_p.Q224Q	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	698					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GTGGGTGCCAGAAGCTTATCA	0.443													13	90					0	0	0.001855	0	0
EIF5A	1984	broad.mit.edu	37	17	7213030	7213030	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:7213030C>T	uc010vtv.1	+	2	313	c.76C>T	c.(76-78)CGT>TGT	p.R26C	EIF5A_uc002gfr.2_Missense_Mutation_p.R56C|EIF5A_uc010vtu.1_Silent_p.Y15Y|EIF5A_uc002gft.2_Missense_Mutation_p.R26C|EIF5A_uc002gfu.2_Missense_Mutation_p.R26C	NM_001970	NP_001961	P63241	IF5A1_HUMAN	eukaryotic translation initiation factor 5A	26	DOHH-binding.				induction of apoptosis|mRNA export from nucleus|peptidyl-lysine modification to hypusine|positive regulation of cell proliferation|positive regulation of translational elongation|positive regulation of translational termination|post-translational protein modification|protein export from nucleus|translational frameshifting|transmembrane transport	annulate lamellae|cytosol|endoplasmic reticulum membrane|nuclear pore	protein N-terminus binding|ribosome binding|translation elongation factor activity|U6 snRNA binding				0						CTCAGCATTACGTAAGAATGG	0.512													11	98					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	17	20320038	20320038	+	RNA	SNP	A	G	G	rs71263797	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:20320038A>G	uc002gwx.2	+	1		c.617A>G								Homo sapiens, clone IMAGE:4938453, mRNA.																		AGCTCAAGTTATACTCAGAGA	0.547													4	42					0	0	0.009096	0	0
NOS2	4843	broad.mit.edu	37	17	26107895	26107895	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:26107895C>T	uc002gzu.2	-	9	1166	c.902G>A	c.(901-903)CGC>CAC	p.R301H	NOS2_uc010crh.1_Missense_Mutation_p.R301H|NOS2_uc010wab.1_Missense_Mutation_p.R301H	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	301					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	CACATCGAAGCGGCCGTACTT	0.627													20	40					0	0	0.007413	0	0
LOC284100	284100	broad.mit.edu	37	17	36214769	36214769	+	Splice_Site	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:36214769C>G	uc002hom.1	-	2		c.189_splice	c.e2+1		LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGGACTTGCCAGTGGTAGC	0.363													6	47					0	0	0.003080	0	0
LOC284100	284100	broad.mit.edu	37	17	36214775	36214775	+	RNA	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:36214775G>T	uc002hom.1	-	2		c.184C>A			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGCCAGTGGTAGCTGCTGG	0.353													46	4					1.46348e-63	1.55505e-63	0.003610	1	0
TBC1D3	729873	broad.mit.edu	37	17	36358893	36358893	+	5'Flank	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:36358893G>C	uc010cvk.2	-						TBC1D3_uc010wdn.1_RNA	NM_001123391	NP_001116863	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3							intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TGTAAACACAGACACACACAC	0.418													14	292					0	0	0.002299	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240610	39240610	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39240610G>A	uc010wfn.1	+	1	152	c.152G>A	c.(151-153)AGG>AAG	p.R51K		NM_033061	NP_149050			keratin associated protein 4-7												0						AGCTGCTGCAGGCCCCAGTGC	0.542													19	236					0	0	0.003330	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254218	39254218	+	Missense_Mutation	SNP	T	C	C	rs112091306		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39254218T>C	uc010wfo.1	-	1	158	c.119A>G	c.(118-120)TAC>TGC	p.Y40C		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	40	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|4.					keratin filament					0						GCTGGGGCGGTAGCAGGTGGT	0.657													17	350					0	0	0.007291	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254277	39254277	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39254277G>A	uc010wfo.1	-	1	99	c.60C>T	c.(58-60)TGC>TGT	p.C20C		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	20	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|2.					keratin filament					0						AGGTCTCCTGGCAGAGGTCTT	0.597													20	345					0	0	0.002299	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254292	39254292	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39254292A>G	uc010wfo.1	-	1	84	c.45T>C	c.(43-45)TGT>TGC	p.C15C		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	15	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].|1.					keratin filament					0						GGTCTTGGCCACAGCCTTGGT	0.567													13	334					0	0	0.004007	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254298	39254298	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39254298T>C	uc010wfo.1	-	1	78	c.39A>G	c.(37-39)CAA>CAG	p.Q13Q		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	13						keratin filament					0						GGCCACAGCCTTGGTCAGAGC	0.562													22	325					0	0	0.003330	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39254329	39254329	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39254329T>C	uc010wfo.1	-	1	47	c.8A>G	c.(7-9)AAC>AGC	p.N3S		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	3						keratin filament					0						ACAACAGGAGTTGACCATGGT	0.552													17	242					0	0	0.008871	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261778	39261778	+	Silent	SNP	A	G	G	rs143952367	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39261778A>G	uc010wfp.1	+	1	138	c.138A>G	c.(136-138)GTA>GTG	p.V46V		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	46	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|5.					keratin filament					0						GCTGTTGTGTATCCAGCTGCT	0.652													13	412					0	0	0.002780	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261929	39261929	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39261929C>T	uc010wfp.1	+	1	289	c.289C>T	c.(289-291)CCT>TCT	p.P97S		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	97	14.|29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].					keratin filament					0						GTGCTGCCAGCCTGCGTGCTG	0.542													11	154					0	0	0.005443	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261994	39261994	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39261994G>C	uc010wfp.1	+	1	354	c.354G>C	c.(352-354)AGG>AGC	p.R118S		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	118	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|18.					keratin filament					0						GCCACCCTAGGtgctgcatct	0.338													13	243					0	0	0.006320	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279994	39279994	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39279994T>C	uc002hwa.2	-	1	426	c.381A>G	c.(379-381)AGA>AGG	p.R127R		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	127	23.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].		Missing (in allele KAP4.12-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			agcactggggtctgcagcagc	0.209													6	124					0	0	0.004990	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280114	39280114	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39280114T>C	uc002hwa.2	-	1	306	c.261A>G	c.(259-261)AGA>AGG	p.R87R		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	87	15.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGTCTGCAGCAGC	0.607													7	144					0	0	0.008291	0	0
KRTAP9-8	83901	broad.mit.edu	37	17	39394318	39394318	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:39394318T>C	uc002hwh.3	+	1	49	c.15T>C	c.(13-15)TGT>TGC	p.C5C	KRTAP9-9_uc010wfq.1_Intron	NM_031963	NP_114169	Q9BYQ0	KRA98_HUMAN	keratin associated protein 9.8	5						keratin filament				ovary(1)	1		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			CCCACTGTTGTTCCCCTTGCT	0.572													7	163					0	0	0.001882	0	0
CDC27	996	broad.mit.edu	37	17	45216125	45216126	+	Missense_Mutation	DNP	TG	CA	CA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:45216125_45216126TG>CA	uc002ild.3	-	13	1810_1811	c.1683_1684CA>TG	c.(1681-1686)GACATG>GATGTG	p.M562V	CDC27_uc002ile.3_Missense_Mutation_p.M568V|CDC27_uc002ilf.3_Missense_Mutation_p.M561V|CDC27_uc010wkp.1_Missense_Mutation_p.M501V|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	562					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TTTTTATCCATGTCTGTTAAGT	0.351													6	18					0	0	0.004672	0	0
SMCHD1	23347	broad.mit.edu	37	18	2707601	2707601	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr18:2707601G>C	uc002klm.3	+	16	2293	c.2104G>C	c.(2104-2106)GAA>CAA	p.E702Q	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	702					chromosome organization		ATP binding				0						TGAAGGAGATGAATTATTGCC	0.343													11	64					0	0	0.008291	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886918	9886918	+	Missense_Mutation	SNP	A	G	G	rs142946305		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr18:9886918A>G	uc002koi.3	+	2	891	c.442A>G	c.(442-444)AAC>GAC	p.N148D	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.N81D	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	148	3.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						CAAAGAGAGTAACATCCCCAA	0.557													8	279					0	0	0.000978	0	0
ATP9B	374868	broad.mit.edu	37	18	77037088	77037088	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr18:77037088T>G	uc002lmx.2	+	13	1317	c.1303T>G	c.(1303-1305)TAT>GAT	p.Y435D	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.Y435D|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_Missense_Mutation_p.Y129D	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	435	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CAAAGCGGTGTATGGATGGAT	0.493													8	211					0	0	0.001368	0	0
PCSK4	54760	broad.mit.edu	37	19	1487057	1487057	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:1487057C>A	uc002ltb.1	-	8	925	c.863G>T	c.(862-864)GGC>GTC	p.G288V	PCSK4_uc002lta.2_Missense_Mutation_p.G100V	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	288	Catalytic (By similarity).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCCAGCCCGCCGCGGCCCTG	0.701													9	53					0.000274275	0.000279146	0.004482	1	0
ACSBG2	81616	broad.mit.edu	37	19	6177251	6177251	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:6177251T>G	uc002mef.1	+	8	977	c.750T>G	c.(748-750)ATT>ATG	p.I250M	ACSBG2_uc002mee.1_Missense_Mutation_p.I63M|ACSBG2_uc002meg.1_Missense_Mutation_p.I250M|ACSBG2_uc002meh.1_Missense_Mutation_p.I250M|ACSBG2_uc002mei.1_Missense_Mutation_p.I200M|ACSBG2_uc010xiz.1_Missense_Mutation_p.I250M	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	250					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TCACGTGGATTGCAGGAGCAG	0.393													15	66					0	0	0.002450	0	0
CD209	30835	broad.mit.edu	37	19	7810448	7810448	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810448T>A	uc002mht.2	-	4	771	c.704A>T	c.(703-705)CAG>CTG	p.Q235L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.Q211L|CD209_uc002mhr.2_Missense_Mutation_p.Q211L|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Missense_Mutation_p.Q235L|CD209_uc002mhq.2_Missense_Mutation_p.Q235L|CD209_uc002mhv.2_Missense_Mutation_p.Q211L|CD209_uc002mhx.2_Missense_Mutation_p.Q191L|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	235	Extracellular (Probable).|7.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GATCTCCTGCTGCTTAGATTT	0.542													7	177					0	0	0.003080	0	0
CD209	30835	broad.mit.edu	37	19	7810453	7810453	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810453A>G	uc002mht.2	-	4	766	c.699T>C	c.(697-699)TCT>TCC	p.S233S	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.S209S|CD209_uc002mhr.2_Silent_p.S209S|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.S233S|CD209_uc002mhq.2_Silent_p.S233S|CD209_uc002mhv.2_Silent_p.S209S|CD209_uc002mhx.2_Silent_p.S189S|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	233	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTGCTGCTTAGATTTCTCTG	0.557													7	165					0	0	0.006214	0	0
CD209	30835	broad.mit.edu	37	19	7810517	7810517	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810517T>A	uc002mht.2	-	4	702	c.635A>T	c.(634-636)CAG>CTG	p.Q212L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.Q188L|CD209_uc002mhr.2_Missense_Mutation_p.Q188L|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Missense_Mutation_p.Q212L|CD209_uc002mhq.2_Missense_Mutation_p.Q212L|CD209_uc002mhv.2_Missense_Mutation_p.Q188L|CD209_uc002mhx.2_Missense_Mutation_p.Q168L|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	212	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GATCTCCTGCTGCTTAGATTT	0.562													9	122					0	0	0.008871	0	0
CD209	30835	broad.mit.edu	37	19	7810534	7810534	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810534A>C	uc002mht.2	-	4	685	c.618T>G	c.(616-618)CTT>CTG	p.L206L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.L182L|CD209_uc002mhr.2_Silent_p.L182L|CD209_uc002mhs.2_Intron|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.L206L|CD209_uc002mhq.2_Silent_p.L206L|CD209_uc002mhv.2_Silent_p.L182L|CD209_uc002mhx.2_Silent_p.L162L|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	206	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						ATTTCTCTGGAAGCTCACCCA	0.557													10	114					0	0	0.002450	0	0
CD209	30835	broad.mit.edu	37	19	7810674	7810674	+	Missense_Mutation	SNP	G	A	A	rs145999419	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810674G>A	uc002mht.2	-	4	545	c.478C>T	c.(478-480)CTT>TTT	p.L160F	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.L136F|CD209_uc002mhr.2_Missense_Mutation_p.L136F|CD209_uc002mhs.2_Missense_Mutation_p.L136F|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Missense_Mutation_p.L160F|CD209_uc002mhq.2_Missense_Mutation_p.L160F|CD209_uc002mhv.2_Missense_Mutation_p.L136F|CD209_uc002mhx.2_Missense_Mutation_p.L116F|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	160	Extracellular (Probable).|7 X approximate tandem repeats.|3.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TTCTCTGGAAGCTCACCCACT	0.547													11	265					0	0	0.008291	0	0
CD209	30835	broad.mit.edu	37	19	7810798	7810798	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810798A>G	uc002mht.2	-	4	421	c.354T>C	c.(352-354)TCT>TCC	p.S118S	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.S94S|CD209_uc002mhr.2_Silent_p.S94S|CD209_uc002mhs.2_Silent_p.S94S|CD209_uc002mhu.2_Silent_p.S118S|CD209_uc010dvq.2_Silent_p.S118S|CD209_uc002mhq.2_Silent_p.S118S|CD209_uc002mhv.2_Silent_p.S94S|CD209_uc002mhx.2_Silent_p.S74S|CD209_uc002mhw.2_Silent_p.S74S|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	118	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTGCAGCTTAGATTTCTCTG	0.552													12	245					0	0	0.007413	0	0
CD209	30835	broad.mit.edu	37	19	7810810	7810810	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810810A>C	uc002mht.2	-	4	409	c.342T>G	c.(340-342)CTT>CTG	p.L114L	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.L90L|CD209_uc002mhr.2_Silent_p.L90L|CD209_uc002mhs.2_Silent_p.L90L|CD209_uc002mhu.2_Silent_p.L114L|CD209_uc010dvq.2_Silent_p.L114L|CD209_uc002mhq.2_Silent_p.L114L|CD209_uc002mhv.2_Silent_p.L90L|CD209_uc002mhx.2_Silent_p.L70L|CD209_uc002mhw.2_Silent_p.L70L|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	114	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						ATTTCTCTGGAAGCTCACCCA	0.547													11	240					0	0	0.001368	0	0
CD209	30835	broad.mit.edu	37	19	7810812	7810812	+	Missense_Mutation	SNP	G	A	A	rs148750071		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7810812G>A	uc002mht.2	-	4	407	c.340C>T	c.(340-342)CTT>TTT	p.L114F	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.L90F|CD209_uc002mhr.2_Missense_Mutation_p.L90F|CD209_uc002mhs.2_Missense_Mutation_p.L90F|CD209_uc002mhu.2_Missense_Mutation_p.L114F|CD209_uc010dvq.2_Missense_Mutation_p.L114F|CD209_uc002mhq.2_Missense_Mutation_p.L114F|CD209_uc002mhv.2_Missense_Mutation_p.L90F|CD209_uc002mhx.2_Missense_Mutation_p.L70F|CD209_uc002mhw.2_Missense_Mutation_p.L70F|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	114	1.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TTCTCTGGAAGCTCACCCACT	0.547													12	242					0	0	0.001855	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830975	7830975	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7830975C>T	uc002mih.2	+	5	715	c.597C>T	c.(595-597)TCC>TCT	p.S199S	CLEC4M_uc010xjv.1_Silent_p.S194S|CLEC4M_uc002mhy.2_Silent_p.S166S|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Silent_p.S176S|CLEC4M_uc010dvs.2_Silent_p.S198S|CLEC4M_uc010xjx.1_Silent_p.S171S|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Silent_p.S194S|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	222	Extracellular (Probable).|5.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						CAGAGAAATCCAAGCTGCAGG	0.557													11	292					0	0	0.000978	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830980	7830980	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7830980T>A	uc002mih.2	+	5	720	c.602T>A	c.(601-603)CTG>CAG	p.L201Q	CLEC4M_uc010xjv.1_Missense_Mutation_p.L196Q|CLEC4M_uc002mhy.2_Missense_Mutation_p.L168Q|CLEC4M_uc010xjw.1_Intron|CLEC4M_uc010dvt.2_Missense_Mutation_p.L178Q|CLEC4M_uc010dvs.2_Missense_Mutation_p.L200Q|CLEC4M_uc010xjx.1_Missense_Mutation_p.L173Q|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Missense_Mutation_p.L196Q|CLEC4M_uc002mia.2_Intron	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	224	Extracellular (Probable).|6.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						AAATCCAAGCTGCAGGAGATC	0.547													11	289					0	0	0.000978	0	0
CLEC4M	10332	broad.mit.edu	37	19	7832508	7832509	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:7832508_7832509CA>TG	uc002mih.2	+	7	1092_1093	c.974_975CA>TG	c.(973-975)TCA>TTG	p.S325L	CLEC4M_uc002mhy.2_3'UTR|CLEC4M_uc010xjw.1_Missense_Mutation_p.S281L|CLEC4M_uc010dvt.2_Missense_Mutation_p.S302L|CLEC4M_uc010dvs.2_Missense_Mutation_p.S324L|CLEC4M_uc010xjx.1_Missense_Mutation_p.S297L|CLEC4M_uc002mhz.2_Intron|CLEC4M_uc002mic.2_Intron|CLEC4M_uc002mia.2_Missense_Mutation_p.S212L	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	348	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						TCACCTCTGTCACCCAGGTAGA	0.574													23	90					0	0	0.004672	0	0
OR7E24	26648	broad.mit.edu	37	19	9362461	9362461	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:9362461A>T	uc002mlb.1	+	1	742	c.742A>T	c.(742-744)ACA>TCA	p.T248S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	248	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GAGAGTTCCAACATCAGATGG	0.438													5	25					0	0	0.000602	0	0
ZNF878	729747	broad.mit.edu	37	19	12155757	12155757	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:12155757C>A	uc002mta.1	-	5	600	c.600G>T	c.(598-600)AGG>AGT	p.R200S		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	153	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						AACTGGGAAACCTGAATGCTT	0.423													7	87					9.31168e-06	9.54057e-06	0.001855	1	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:12429722T>C	uc002mtp.2	-	4	1355	c.1117A>G	c.(1117-1119)ACG>GCG	p.T373A		NM_145276	NP_660319	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGATAACGTTTTCCCACAC	0.413													4	64					0	0	0.003080	0	0
OR10H1	26539	broad.mit.edu	37	19	15918656	15918656	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:15918656G>A	uc002nbq.2	-	1	281	c.192C>T	c.(190-192)TGC>TGT	p.C64C		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGGAGAGGGCGCACAGGAAGA	0.642													10	120					0	0	0.003163	0	0
ZNF93	81931	broad.mit.edu	37	19	20045361	20045361	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:20045361A>G	uc002non.2	+	4	1708	c.1597A>G	c.(1597-1599)AGA>GGA	p.R533G		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	533						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						AATTCATACTAGAGAGAAACC	0.358													5	35					0	0	0.006214	0	0
ZNF626	199777	broad.mit.edu	37	19	20808090	20808090	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:20808090C>T	uc002npb.1	-	4	743	c.593G>A	c.(592-594)GGG>GAG	p.G198E	ZNF626_uc002npc.1_Missense_Mutation_p.G122E	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GTAGGGTTTCCCTCCAGTATG	0.363													4	22					0	0	0.000602	0	0
ZNF708	7562	broad.mit.edu	37	19	21476501	21476501	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:21476501C>T	uc002npq.1	-	4	1465	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	ZNF708_uc002npr.1_Missense_Mutation_p.E359K|ZNF708_uc010ecs.1_Missense_Mutation_p.E359K	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	423	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						CCACATTCTTCACATTTGTAG	0.343													5	28					0	0	0.000602	0	0
ZNF708	7562	broad.mit.edu	37	19	21476519	21476519	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:21476519T>C	uc002npq.1	-	4	1447	c.1249A>G	c.(1249-1251)AAG>GAG	p.K417E	ZNF708_uc002npr.1_Missense_Mutation_p.K353E|ZNF708_uc010ecs.1_Missense_Mutation_p.K353E	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	417					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						TAGGGTTTCTTTCCAGTATGA	0.343													4	31					0	0	0.009096	0	0
ZNF429	353088	broad.mit.edu	37	19	21720805	21720805	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:21720805T>C	uc002nqd.1	+	4	2087	c.1950T>C	c.(1948-1950)CAT>CAC	p.H650H	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	650					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						tggtggctcatgcctgtaatc	0.154													7	96					0	0	0.001855	0	0
ZNF43	7594	broad.mit.edu	37	19	21990546	21990546	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:21990546T>C	uc002nqj.2	-	4	2423	c.2293A>G	c.(2293-2295)AAA>GAA	p.K765E	ZNF43_uc010ecv.2_Missense_Mutation_p.K759E|ZNF43_uc002nql.2_Missense_Mutation_p.K759E|ZNF43_uc002nqm.2_Missense_Mutation_p.K759E|ZNF43_uc002nqk.2_Missense_Mutation_p.K695E	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	765	C2H2-type 22.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CCACATTCTTTACATTTGTAG	0.353													4	30					0	0	0.009096	0	0
ZNF99	7652	broad.mit.edu	37	19	22941111	22941111	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:22941111T>C	uc010xrh.1	-	5	1327	c.1327A>G	c.(1327-1329)AAG>GAG	p.K443E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAGGGTTTCTTTCCAGTATGA	0.343													4	29					0	0	0.001984	0	0
ZNF91	7644	broad.mit.edu	37	19	23544783	23544783	+	Missense_Mutation	SNP	C	T	T	rs410211		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:23544783C>T	uc002nre.2	-	4	1111	c.998G>A	c.(997-999)CGT>CAT	p.R333H	ZNF91_uc010xrj.1_Missense_Mutation_p.R301H	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	333	C2H2-type 7.			R -> H (in Ref. 1; AAA59469).		nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAACGGCTAAAAGC	0.393													7	50					0	0	0.000978	0	0
ZNF675	171392	broad.mit.edu	37	19	23836898	23836898	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:23836898T>A	uc002nri.2	-	4	1019	c.837A>T	c.(835-837)ACA>ACT	p.T279T		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	279					bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				GTTTCTCTCCTGTATGAATTA	0.363													5	41					0	0	0.003080	0	0
ZNF681	148213	broad.mit.edu	37	19	23926839	23926839	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:23926839A>G	uc002nrk.3	-	4	1655	c.1513T>C	c.(1513-1515)TCC>CCC	p.S505P	ZNF681_uc002nrl.3_Missense_Mutation_p.S436P|ZNF681_uc002nrj.3_Missense_Mutation_p.S436P	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	505					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CATTTGTAGGATTTCTCTCCA	0.373													5	62					0	0	0.001984	0	0
KIRREL2	84063	broad.mit.edu	37	19	36352022	36352022	+	Splice_Site	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:36352022A>G	uc002ocb.3	+	9	1269	c.1057_splice	c.e9-2	p.V353_splice	KIRREL2_uc002obz.3_Splice_Site_p.V353_splice|KIRREL2_uc002oca.3_Splice_Site_p.V303_splice|KIRREL2_uc002occ.3_Splice_Site_p.V300_splice|KIRREL2_uc002ocd.3_Splice_Site_p.V350_splice	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c						cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCCCTGTCGCAGGTGCTGGGC	0.672													12	46					0	0	0.000978	0	0
ZNF420	147923	broad.mit.edu	37	19	37618854	37618854	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:37618854C>G	uc002ofl.2	+	5	1176	c.961C>G	c.(961-963)CAG>GAG	p.Q321E		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	321	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTGTGGCTCACAGCTTTCTCA	0.393													8	95					0	0	0.004482	0	0
IL28B	282617	broad.mit.edu	37	19	39734659	39734659	+	Missense_Mutation	SNP	G	A	A	rs149832972	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:39734659G>A	uc010xut.1	-	3	401	c.397C>T	c.(397-399)CTC>TTC	p.L133F	IL28B_uc010xuu.1_Missense_Mutation_p.L133F	NM_172139	NP_742151	Q8IZI9	IL28B_HUMAN	interleukin 28B	133					response to virus	extracellular space	cytokine activity				0	all_cancers(60;2.81e-07)|all_lung(34;7.81e-08)|Lung NSC(34;9.29e-08)|all_epithelial(25;3.9e-07)|Ovarian(47;0.0315)		Epithelial(26;1.55e-27)|all cancers(26;1.41e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CAGGCCCGGAGCTGGGAGAGG	0.672													11	348					0	0	0.001368	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580552	40580552	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:40580552T>G	uc002omy.2	-	6	2022	c.1797A>C	c.(1795-1797)CAA>CAC	p.Q599H	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.Q599H|ZNF780A_uc010xvh.1_Missense_Mutation_p.Q600H	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	599	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTCGAATAAGTTGCATATGAA	0.403													8	163					0	0	0.008291	0	0
CD177	57126	broad.mit.edu	37	19	43864488	43864488	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:43864488A>G	uc002owi.2	+	6	733	c.691A>G	c.(691-693)ACC>GCC	p.T231A	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	231					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				CACTGATTGGACCACATCGAA	0.537													19	190					0	0	0.006122	0	0
CD177	57126	broad.mit.edu	37	19	43866351	43866351	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:43866351T>A	uc002owi.2	+	10	1235	c.1193T>A	c.(1192-1194)GTG>GAG	p.V398E	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	398					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				AAGCGTGATGTGCAGCCTCCT	0.612													32	835					0	0	0.003610	0	0
ZNF225	7768	broad.mit.edu	37	19	44636231	44636231	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:44636231A>G	uc002oyj.1	+	5	1707	c.1464A>G	c.(1462-1464)GAA>GAG	p.E488E	ZNF225_uc010eje.1_Silent_p.E405E|ZNF225_uc010ejf.1_Silent_p.E488E	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	488	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AATGTGAAGAATGTGGGAAAA	0.388													7	156					0	0	0.005443	0	0
ZNF233	353355	broad.mit.edu	37	19	44778319	44778319	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:44778319T>C	uc002oyz.1	+	5	1633	c.1506T>C	c.(1504-1506)CAT>CAC	p.H502H	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Silent_p.H317H	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	502	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				AGAGAGTCCATACAGGAGAGA	0.473													9	176					0	0	0.006320	0	0
NOVA2	4858	broad.mit.edu	37	19	46444090	46444090	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:46444090C>T	uc002pdv.2	-	4	558	c.510G>A	c.(508-510)CCG>CCA	p.P170P		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	170	KH 2.					nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		TGATGCCCTCCGGCTTCTGGG	0.647													7	46					0	0	0.003080	0	0
CGB2	114336	broad.mit.edu	37	19	49536439	49536439	+	Silent	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:49536439A>T	uc002plw.2	+	3	676	c.453A>T	c.(451-453)CGA>CGT	p.R151R	CGB_uc010yad.1_Intron|SNAR-G2_uc010yae.1_5'Flank|CGB2_uc010yaf.1_Silent_p.R139R|CGB2_uc010yag.1_Silent_p.R139R	NM_033378	NP_203696			chorionic gonadotropin, beta polypeptide 2												0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)		GCCCATCCCGACTCCCGGGGC	0.637													30	780					0	0	0.009718	0	0
PTH2	113091	broad.mit.edu	37	19	49925829	49925829	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:49925829C>G	uc002pnn.1	-	2	301	c.199G>C	c.(199-201)GAC>CAC	p.D67H		NM_178449	NP_848544	Q96A98	TIP39_HUMAN	parathyroid hormone 2 preproprotein	67					neuropeptide signaling pathway	extracellular region					0				OV - Ovarian serous cystadenocarcinoma(262;0.0015)|GBM - Glioblastoma multiforme(486;0.044)|Lung(386;0.0785)|LUSC - Lung squamous cell carcinoma(496;0.0836)		GCCGCGTCGTCCGCCAGCGCC	0.746													4	25					0	0	0.009096	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461721	50461721	+	Silent	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50461721C>A	uc010ybh.1	-	8	1561	c.1470G>T	c.(1468-1470)GGG>GGT	p.G490G	SIGLEC11_uc010ybi.1_Intron	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	490	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GCAGCTCCTCCCCAAGCCACC	0.706													6	56					0.00116845	0.00118656	0.001168	1	0
SIGLEC11	114132	broad.mit.edu	37	19	50462084	50462084	+	Silent	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50462084G>T	uc010ybh.1	-	7	1270	c.1179C>A	c.(1177-1179)ACC>ACA	p.T393T	SIGLEC11_uc010ybi.1_Silent_p.T393T	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	393	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GGCTGCTGTGGGTGACACAGA	0.677													12	222					2.27111e-07	2.34792e-07	0.001368	1	0
SIGLEC11	114132	broad.mit.edu	37	19	50462124	50462124	+	Missense_Mutation	SNP	G	C	C	rs149136670	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50462124G>C	uc010ybh.1	-	7	1230	c.1139C>G	c.(1138-1140)CCG>CGG	p.P380R	SIGLEC11_uc010ybi.1_Missense_Mutation_p.P380R	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	380	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CTCCAGGACCGGGAGGGATGT	0.672													20	221					0	0	0.007413	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50463835	50463835	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50463835C>T	uc010ybh.1	-	2	525	c.434G>A	c.(433-435)AGC>AAC	p.S145N	SIGLEC11_uc010ybi.1_Missense_Mutation_p.S145N	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	145	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GAACGCATTGCTCAGGAAACT	0.562													23	358					0	0	0.003610	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50473422	50473422	+	RNA	SNP	G	C	C	rs67889261		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50473422G>C	uc002prf.2	+	2		c.441G>C			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						ACATAGTTTCGTGAACAATTT	0.547													29	398					0	0	0.009718	0	0
SIGLEC16	400709	broad.mit.edu	37	19	50473426	50473426	+	RNA	SNP	A	G	G	rs4009627		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50473426A>G	uc002prf.2	+	2		c.445A>G			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						AGTTTCGTGAACAATTTGTTC	0.557													20	360					0	0	0.004878	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453178	53453178	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53453178G>C	uc002qal.1	-	5	2151	c.1850C>G	c.(1849-1851)GCA>GGA	p.A617G	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.A601G	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	617					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		AGGTTTCTCTGCAGTATGAAC	0.398													5	68					0	0	0.000978	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453272	53453272	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53453272C>T	uc002qal.1	-	5	2057	c.1756G>A	c.(1756-1758)GTT>ATT	p.V586I	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Missense_Mutation_p.V570I	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	586	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		CCAGTATGAACTCTCTGATGT	0.373													7	52					0	0	0.006214	0	0
ZNF347	84671	broad.mit.edu	37	19	53644380	53644380	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53644380T>C	uc002qbb.1	-	5	1770	c.1701A>G	c.(1699-1701)AAA>AAG	p.K567K	ZNF347_uc010eql.1_Silent_p.K568K|ZNF347_uc002qbc.1_Silent_p.K568K	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ATTTGTAAGGTTTTTCTCCAG	0.413													5	114					0	0	0.001368	0	0
VN1R2	317701	broad.mit.edu	37	19	53762441	53762441	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53762441T>G	uc002qbi.2	+	1	897	c.813T>G	c.(811-813)GTT>GTG	p.V271V		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	271	Helical; Name=5; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		TCCATGATGTTTTGTGTCTGG	0.453													12	173					0	0	0.001855	0	0
ZNF845	91664	broad.mit.edu	37	19	53856694	53856694	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53856694A>G	uc010ydv.1	+	4	2883	c.2766A>G	c.(2764-2766)AAA>AAG	p.K922K	ZNF845_uc010ydw.1_Silent_p.K922K	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	922	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGTGTGGCAAAACCTTCCGTC	0.358													4	21					0	0	0.001984	0	0
ZNF761	388561	broad.mit.edu	37	19	53958988	53958988	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53958988T>C	uc010eqp.2	+	7	1685	c.1227T>C	c.(1225-1227)CCT>CCC	p.P409P	ZNF761_uc010ydy.1_Silent_p.P355P|ZNF761_uc002qbt.1_Silent_p.P355P	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		GAGAGAAACCTTACAAATGTG	0.368													7	129					0	0	0.008291	0	0
ZNF761	388561	broad.mit.edu	37	19	53959137	53959137	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53959137G>T	uc010eqp.2	+	7	1834	c.1376G>T	c.(1375-1377)CGT>CTT	p.R459L	ZNF761_uc010ydy.1_Missense_Mutation_p.R405L|ZNF761_uc002qbt.1_Missense_Mutation_p.R405L	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	459	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CATCGTAGACGTCATACTGGA	0.393													4	61					3.07112e-06	3.15013e-06	0.000978	1	0
ZNF761	388561	broad.mit.edu	37	19	53959151	53959151	+	Missense_Mutation	SNP	C	A	A	rs146851069		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53959151C>A	uc010eqp.2	+	7	1848	c.1390C>A	c.(1390-1392)CAA>AAA	p.Q464K	ZNF761_uc010ydy.1_Missense_Mutation_p.Q410K|ZNF761_uc002qbt.1_Missense_Mutation_p.Q410K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	464					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TACTGGAGAGCAACCTTACAA	0.393													7	51					3.45872e-05	3.53978e-05	0.004007	1	0
ZNF813	126017	broad.mit.edu	37	19	53994380	53994380	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53994380T>C	uc002qbu.2	+	4	1022	c.894T>C	c.(892-894)CCT>CCC	p.P298P	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	298					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		GAGAGAAACCTTACAAATGTG	0.388													4	59					0	0	0.001168	0	0
ZNF813	126017	broad.mit.edu	37	19	53994450	53994450	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53994450G>A	uc002qbu.2	+	4	1092	c.964G>A	c.(964-966)GCT>ACT	p.A322T	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		GAGAATTCATGCTGGAGAAAA	0.388													7	100					0	0	0.004482	0	0
ZNF813	126017	broad.mit.edu	37	19	53995130	53995130	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:53995130T>G	uc002qbu.2	+	4	1772	c.1644T>G	c.(1642-1644)GAT>GAG	p.D548E	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	548					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		ATACTGGAGATAAACCTTACA	0.378													5	52					0	0	0.004482	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701528	56701528	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56701528C>T	uc010ygh.1	-	4	1156	c.1156G>A	c.(1156-1158)GAT>AAT	p.D386N		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	386	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CGACAGAGATCACATTGAAAG	0.527													9	132					0	0	0.006214	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701532	56701532	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56701532T>C	uc010ygh.1	-	4	1152	c.1152A>G	c.(1150-1152)CAA>CAG	p.Q384Q		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	384	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AGAGATCACATTGAAAGGGTC	0.527													10	134					0	0	0.008291	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701664	56701664	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56701664C>T	uc010ygh.1	-	4	1020	c.1020G>A	c.(1018-1020)CCG>CCA	p.P340P		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	340					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GGTGACTGACCGGGCCCGCAG	0.542													14	357					0	0	0.004990	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701801	56701802	+	Missense_Mutation	DNP	TG	CT	CT	rs61742626		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56701801_56701802TG>CT	uc010ygh.1	-	4	882_883	c.882_883CA>AG	c.(880-885)AGCAGT>AGAGGT	p.294_295SS>RG		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	294_295					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTTTTGGGACTGCTCAGATTCA	0.525													16	497					0	0	0.004672	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701827	56701827	+	Missense_Mutation	SNP	T	C	C	rs61742634		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56701827T>C	uc010ygh.1	-	4	857	c.857A>G	c.(856-858)AAC>AGC	p.N286S		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	286					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATCTCCTCTGTTCCCGCTGTG	0.532													16	502					0	0	0.004007	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56702263	56702263	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56702263T>C	uc010ygh.1	-	3	682	c.682A>G	c.(682-684)AAC>GAC	p.N228D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	228					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCTTCCCTGTTTTCCTTCAGA	0.507													12	275					0	0	0.000978	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704097	56704097	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56704097C>T	uc010ygh.1	-	1	325	c.325G>A	c.(325-327)GTG>ATG	p.V109M		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	109	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CAGCTCTGCACACCGTTCACC	0.547													37	175					0	0	0.003214	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704100	56704100	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56704100C>T	uc010ygh.1	-	1	322	c.322G>A	c.(322-324)GGT>AGT	p.G108S		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	108	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTCTGCACACCGTTCACCTTG	0.552													31	163					0	0	0.006230	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704106	56704106	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56704106C>T	uc010ygh.1	-	1	316	c.316G>A	c.(316-318)GTG>ATG	p.V106M		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	106	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACACCGTTCACCTTGACTAAG	0.547													39	138					0	0	0.008740	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704108	56704108	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56704108T>A	uc010ygh.1	-	1	314	c.314A>T	c.(313-315)AAG>ATG	p.K105M		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	105	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ACCGTTCACCTTGACTAAGAC	0.552													39	142					0	0	0.006999	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733033	56733033	+	Missense_Mutation	SNP	A	G	G	rs142259207	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733033A>G	uc002qmq.2	-	5	1568	c.1402T>C	c.(1402-1404)TAC>CAC	p.Y468H	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.Y351H|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.Y468H|ZSCAN5A_uc002qms.1_Missense_Mutation_p.Y467H	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	468	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAACATTTGTAGGGTTTCTCT	0.493													16	298					0	0	0.006122	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733046	56733046	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733046G>A	uc002qmq.2	-	5	1555	c.1389C>T	c.(1387-1389)TCC>TCT	p.S463S	ZSCAN5A_uc010ygi.1_Silent_p.S346S|ZSCAN5A_uc002qmr.2_Silent_p.S463S|ZSCAN5A_uc002qms.1_Silent_p.S462S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	463					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTTTCTCTCCGGAGTGGATGC	0.498													18	293					0	0	0.006122	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733189	56733189	+	Missense_Mutation	SNP	C	T	T	rs151298410	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733189C>T	uc002qmq.2	-	5	1412	c.1246G>A	c.(1246-1248)GTC>ATC	p.V416I	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.V299I|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.V416I|ZSCAN5A_uc002qms.1_Missense_Mutation_p.V415I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	416	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TTCTGGCAGACGTCACACGTG	0.493													24	200					0	0	0.008361	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733268	56733268	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733268A>G	uc002qmq.2	-	5	1333	c.1167T>C	c.(1165-1167)TGT>TGC	p.C389C	ZSCAN5A_uc010ygi.1_Silent_p.C272C|ZSCAN5A_uc002qmr.2_Silent_p.C389C|ZSCAN5A_uc002qms.1_Silent_p.C388C	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	389	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGCGCTTCCCACAGAGATTAC	0.507													17	200					0	0	0.004990	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733280	56733280	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733280T>C	uc002qmq.2	-	5	1321	c.1155A>G	c.(1153-1155)CAA>CAG	p.Q385Q	ZSCAN5A_uc010ygi.1_Silent_p.Q268Q|ZSCAN5A_uc002qmr.2_Silent_p.Q385Q|ZSCAN5A_uc002qms.1_Silent_p.Q384Q	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	385	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGAGATTACATTGAAAGAGTC	0.517													17	216					0	0	0.004990	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733311	56733311	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733311T>G	uc002qmq.2	-	5	1290	c.1124A>C	c.(1123-1125)AAG>ACG	p.K375T	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.K258T|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.K375T|ZSCAN5A_uc002qms.1_Missense_Mutation_p.K374T	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	375	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTGTGATCTCTTGTGGATGAC	0.517													11	248					0	0	0.000978	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733349	56733350	+	Missense_Mutation	DNP	CT	GC	GC			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733349_56733350CT>GC	uc002qmq.2	-	5	1251_1252	c.1085_1086AG>GC	c.(1084-1086)GAG>GGC	p.E362G	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.E245G|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.E362G|ZSCAN5A_uc002qms.1_Missense_Mutation_p.E361G	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	362	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TAAACCTCTTCTCGCACACGTC	0.53													17	307					0	0	0.004672	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733438	56733438	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733438T>C	uc002qmq.2	-	5	1163	c.997A>G	c.(997-999)ATT>GTT	p.I333V	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.I216V|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.I333V|ZSCAN5A_uc002qms.1_Missense_Mutation_p.I332V	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	333					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGGGAATGAATTGAATTCATC	0.562													37	452					0	0	0.006999	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733441	56733441	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733441A>G	uc002qmq.2	-	5	1160	c.994T>C	c.(994-996)TCA>CCA	p.S332P	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S215P|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S332P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S331P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	332					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAATGAATTGAATTCATCCCA	0.562													23	471					0	0	0.006320	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733445	56733445	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733445C>G	uc002qmq.2	-	5	1156	c.990G>C	c.(988-990)ATG>ATC	p.M330I	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.M213I|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.M330I|ZSCAN5A_uc002qms.1_Missense_Mutation_p.M329I	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	330					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GAATTGAATTCATCCCAGCTT	0.562													20	477					0	0	0.002780	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733449	56733449	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733449C>T	uc002qmq.2	-	5	1152	c.986G>A	c.(985-987)GGG>GAG	p.G329E	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.G212E|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.G329E|ZSCAN5A_uc002qms.1_Missense_Mutation_p.G328E	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	329					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGAATTCATCCCAGCTTGTCC	0.567													31	497					0	0	0.004289	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733526	56733526	+	Silent	SNP	A	G	G	rs145786370	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733526A>G	uc002qmq.2	-	5	1075	c.909T>C	c.(907-909)GAT>GAC	p.D303D	ZSCAN5A_uc010ygi.1_Silent_p.D186D|ZSCAN5A_uc002qmr.2_Silent_p.D303D|ZSCAN5A_uc002qms.1_Silent_p.D302D	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	303					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGGAGGAGGCATCTGGTTTGC	0.532													31	718					0	0	0.002836	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733549	56733550	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733549_56733550TG>CT	uc002qmq.2	-	5	1051_1052	c.885_886CA>AG	c.(883-888)AGCAGT>AGAGGT	p.295_296SS>RG	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.178_179SS>RG|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.295_296SS>RG|ZSCAN5A_uc002qms.1_Missense_Mutation_p.294_295SS>RG	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	295_296					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTTTTGGGACTGCTCAGATTCA	0.545													27	788					0	0	0.004672	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733575	56733575	+	Missense_Mutation	SNP	T	C	C	rs142298937	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733575T>C	uc002qmq.2	-	5	1026	c.860A>G	c.(859-861)AAC>AGC	p.N287S	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.N170S|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.N287S|ZSCAN5A_uc002qms.1_Missense_Mutation_p.N286S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	287					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTCTCCTCTGTTCCCGCTGTG	0.542													27	850					0	0	0.007291	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733967	56733967	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56733967C>G	uc002qmq.2	-	4	898	c.732G>C	c.(730-732)AAG>AAC	p.K244N	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.K127N|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.K244N|ZSCAN5A_uc002qms.1_Missense_Mutation_p.K244N	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	244					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CACTGGGACTCTTTGGAAGCT	0.562													33	481					0	0	0.003271	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734017	56734017	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56734017T>C	uc002qmq.2	-	4	848	c.682A>G	c.(682-684)AAC>GAC	p.N228D	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.N111D|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.N228D|ZSCAN5A_uc002qms.1_Missense_Mutation_p.N228D	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	228					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTTCCCTGTTTTCCTTCAGA	0.502													23	544					0	0	0.003954	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734027	56734027	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56734027A>G	uc002qmq.2	-	4	838	c.672T>C	c.(670-672)GAT>GAC	p.D224D	ZSCAN5A_uc010ygi.1_Silent_p.D107D|ZSCAN5A_uc002qmr.2_Silent_p.D224D|ZSCAN5A_uc002qms.1_Silent_p.D224D	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	224					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TTTCCTTCAGATCCTTCTCCA	0.498													36	531					0	0	0.003271	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734043	56734043	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56734043T>G	uc002qmq.2	-	4	822	c.656A>C	c.(655-657)CAG>CCG	p.Q219P	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.Q102P|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.Q219P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.Q219P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	219					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTCCAAGGTCTGCTTGGGTCT	0.488													38	520					0	0	0.004878	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56734059	56734059	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56734059A>C	uc002qmq.2	-	4	806	c.640T>G	c.(640-642)TCT>GCT	p.S214A	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.S97A|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S214A|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S214A	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	214					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGTCTCAGAGACTTTGGGTCA	0.498													33	489					0	0	0.002096	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56735084	56735084	+	Silent	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56735084C>A	uc002qmq.2	-	3	670	c.504G>T	c.(502-504)TCG>TCT	p.S168S	ZSCAN5A_uc010ygi.1_Silent_p.S51S|ZSCAN5A_uc002qmr.2_Silent_p.S168S|ZSCAN5A_uc002qms.1_Silent_p.S168S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	168					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCTGGTTCACCGAGGAGGCCC	0.587													18	324					0.00121646	0.00123396	0.008871	1	0
ZSCAN5A	79149	broad.mit.edu	37	19	56735155	56735155	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56735155T>C	uc002qmq.2	-	3	599	c.433A>G	c.(433-435)ATC>GTC	p.I145V	ZSCAN5A_uc010ygi.1_Missense_Mutation_p.I28V|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.I145V|ZSCAN5A_uc002qms.1_Missense_Mutation_p.I145V	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	145					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GCCATCTCGATATCTGAGTCC	0.512													15	331					0	0	0.002450	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736288	56736288	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56736288G>C	uc002qmq.2	-	2	294	c.128C>G	c.(127-129)TCT>TGT	p.S43C	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S43C|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S43C	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	43					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GTTCACGTGAGAAATCTCAGG	0.552													17	382					0	0	0.008871	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736291	56736291	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56736291A>G	uc002qmq.2	-	2	291	c.125T>C	c.(124-126)ATT>ACT	p.I42T	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.I42T|ZSCAN5A_uc002qms.1_Missense_Mutation_p.I42T	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	42					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CACGTGAGAAATCTCAGGGTC	0.552													21	375					0	0	0.003330	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736331	56736331	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56736331A>G	uc002qmq.2	-	2	251	c.85T>C	c.(85-87)TCA>CCA	p.S29P	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.S29P|ZSCAN5A_uc002qms.1_Missense_Mutation_p.S29P	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	29					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TGAGTTTCTGAGGATGCCATA	0.512													25	370					0	0	0.003330	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736335	56736335	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56736335T>A	uc002qmq.2	-	2	247	c.81A>T	c.(79-81)GCA>GCT	p.A27A	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Silent_p.A27A|ZSCAN5A_uc002qms.1_Silent_p.A27A	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	27					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TTTCTGAGGATGCCATAGACC	0.502													16	374					0	0	0.004007	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736365	56736365	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:56736365T>G	uc002qmq.2	-	2	217	c.51A>C	c.(49-51)AGA>AGC	p.R17S	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.R17S|ZSCAN5A_uc002qms.1_Missense_Mutation_p.R17S	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	17					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CCAACCCAGGTCTGTTGCAGG	0.468													15	366					0	0	0.004007	0	0
ZNF551	90233	broad.mit.edu	37	19	58199410	58199410	+	Silent	SNP	T	C	C	rs143357923		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:58199410T>C	uc002qpw.3	+	3	1942	c.1719T>C	c.(1717-1719)TGT>TGC	p.C573C	ZNF551_uc002qpv.3_Silent_p.C516C|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	589	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTTATGAATGTAGTGAATGTG	0.443													6	131					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	2	905366	905366	+	RNA	SNP	A	G	G	rs35926857	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:905366A>G	uc010ewg.2	-	1		c.217T>C			uc010ewh.1_Missense_Mutation_p.W194R					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		ATTTCCTCCCAGCCTCCTCGC	0.547													13	237					0	0	0.003330	0	0
STRN	6801	broad.mit.edu	37	2	37076668	37076668	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:37076668T>C	uc002rpn.2	-	18	2283	c.2274A>G	c.(2272-2274)GTA>GTG	p.V758V	STRN_uc010ezx.2_Silent_p.V721V	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	758	WD 6.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				GGTGGAAAGCTACATCATGAA	0.408													8	24					0	0	0.003080	0	0
OXER1	165140	broad.mit.edu	37	2	42991307	42991307	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:42991307G>A	uc002rss.2	-	1	95	c.13C>T	c.(13-15)CGT>TGT	p.R5C		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	5	Extracellular (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						TGGCCACCACGGTGACACAAC	0.572													19	85					0	0	0.007413	0	0
TGOLN2	10618	broad.mit.edu	37	2	85554607	85554607	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:85554607T>C	uc010fgd.1	-	2	537	c.248A>G	c.(247-249)AAG>AGG	p.K83R	TGOLN2_uc002soz.2_Missense_Mutation_p.K83R|TGOLN2_uc002spa.2_Intron|TGOLN2_uc002spb.2_Missense_Mutation_p.K83R|TGOLN2_uc002spc.1_Missense_Mutation_p.K83R	NM_006464	NP_006455	O43493	TGON2_HUMAN	trans-golgi network protein 2	83	Extracellular (Potential).|14 X 14 AA tandem repeats.|3.					integral to membrane|nucleus|plasma membrane|trans-Golgi network|transport vesicle	protein binding				0						CGCACCCGACTTGTTGGGGGT	0.602													14	474					0	0	0.003610	0	0
GCC2	9648	broad.mit.edu	37	2	109086210	109086210	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:109086210G>A	uc002tec.2	+	6	579	c.425G>A	c.(424-426)CGT>CAT	p.R142H	GCC2_uc002ted.2_Missense_Mutation_p.R41H	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	142	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ATGGCAGTACGTTCCAAATAC	0.338													5	30					0	0	0.000602	0	0
PDK1	5163	broad.mit.edu	37	2	173435524	173435524	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:173435524C>T	uc002uhr.2	+	8	1017	c.917C>T	c.(916-918)ACG>ATG	p.T306M	PDK1_uc010zdz.1_Missense_Mutation_p.T151M|PDK1_uc010zea.1_RNA|PDK1_uc002uhq.1_Missense_Mutation_p.T326M|PDK1_uc002uhs.2_Missense_Mutation_p.T306M|PDK1_uc010zeb.1_Missense_Mutation_p.T326M	NM_002610	NP_002601	Q15118	PDK1_HUMAN	pyruvate dehydrogenase kinase 1 precursor	306	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|small GTPase mediated signal transduction	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(3)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.12)			GTTCATGTCACGCTGGGTAAT	0.358									Autosomal_Dominant_Polycystic_Kidney_Disease				4	27					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179517221	179517221	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:179517221C>G	uc010zfg.1	-	156	32013	c.31789G>C	c.(31789-31791)GCT>CCT	p.A10597P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11524							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGGAGGAGCCGCTGGCACT	0.378													6	115					0	0	0.004289	0	0
MARS2	92935	broad.mit.edu	37	2	198571355	198571355	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:198571355G>A	uc002uuq.2	+	1	1269	c.1226G>A	c.(1225-1227)CGA>CAA	p.R409Q	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	409					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	CTCTTGAACCGATGCACTGCC	0.547													36	84					0	0	0.003271	0	0
CFLAR	8837	broad.mit.edu	37	2	202025295	202025295	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:202025295C>A	uc002uxb.3	+	9	1386	c.934C>A	c.(934-936)CTG>ATG	p.L312M	CFLAR_uc010zhk.1_Missense_Mutation_p.L216M|CFLAR_uc002uxc.3_Missense_Mutation_p.L277M|CFLAR_uc010zhl.1_Missense_Mutation_p.L216M|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Missense_Mutation_p.L312M|CFLAR_uc002uxf.2_Missense_Mutation_p.L312M|CFLAR_uc010fsy.2_Intron|CFLAR_uc010fsx.2_Intron|CFLAR_uc010zhm.1_Missense_Mutation_p.L216M|CFLAR_uc010fsz.2_Missense_Mutation_p.L67M|CFLAR_uc002uxg.2_Missense_Mutation_p.L67M|uc002uxh.1_5'Flank	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	312	Interaction with caspase-3.|Interaction with TRAF1 and TRAF2.|Not proteolytically processed and involved in apoptosis inhibition.|Caspase.|Interaction with caspase-8 subunits p18 and p10.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						TGTGTGTGTCCTGGTGAGCCG	0.522													7	231					2.0095e-06	2.0635e-06	0.001984	1	0
STRADB	55437	broad.mit.edu	37	2	202342850	202342850	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:202342850T>C	uc002uyd.3	+	9	1126	c.761T>C	c.(760-762)GTT>GCT	p.V254A		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	254	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						ATTTACAGTGTTGGGATTACA	0.388													5	33					0	0	0.001168	0	0
XRN2	22803	broad.mit.edu	37	20	21321418	21321418	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:21321418A>C	uc002wsf.1	+	15	1433	c.1338A>C	c.(1336-1338)AGA>AGC	p.R446S	XRN2_uc002wsg.1_Missense_Mutation_p.R370S|XRN2_uc010zsk.1_Missense_Mutation_p.R392S	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	446					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						TGGGTTCAAGAAATTCACCAG	0.368													6	63					0	0	0.006214	0	0
CST9L	128821	broad.mit.edu	37	20	23546710	23546710	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:23546710A>G	uc002wtk.3	-	2	554	c.255T>C	c.(253-255)ACT>ACC	p.T85T		NM_080610	NP_542177	Q9H4G1	CST9L_HUMAN	cystatin 9-like precursor	85						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					TTGAGAATACAGTCTTGGACT	0.458													6	161					0	0	0.001168	0	0
FAM182B	728882	broad.mit.edu	37	20	25848630	25848630	+	RNA	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:25848630G>T	uc002wvd.1	-	1		c.157C>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ctgggatgccgtgctgcttcc	0													6	10					0.000157383	0.000160356	0.003080	1	0
FAM182B	728882	broad.mit.edu	37	20	25848640	25848640	+	RNA	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:25848640C>T	uc002wvd.1	-	1		c.147G>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						gtgctgcttcccccggactcc	0													6	9					0	0	0.003080	0	0
FAM182B	728882	broad.mit.edu	37	20	25848650	25848650	+	RNA	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:25848650C>T	uc002wvd.1	-	1		c.137G>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ccccggactccgcctggggtt	0													5	10					0	0	0.001168	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33421984	33421984	+	RNA	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:33421984A>G	uc002xax.2	-	1		c.282T>C				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						agtagagacgaggtttcacca	0													5	6					0	0	0.001984	0	0
HMGB3L1	128872	broad.mit.edu	37	20	33422022	33422022	+	RNA	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:33422022T>G	uc002xax.2	-	1		c.244A>C				NR_002165				Homo sapiens high-mobility group (nonhistone chromosomal) protein 4-like, mRNA (cDNA clone IMAGE:40002762).												0						tcaaactccttacctcaggtg	0.06													8	23					0	0	0.000978	0	0
RGS19	10287	broad.mit.edu	37	20	62705660	62705660	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:62705660C>T	uc002yhy.2	-	5	566	c.299G>A	c.(298-300)GGA>GAA	p.G100E	RGS19_uc002yhz.2_Missense_Mutation_p.G78E|RGS19_uc002yia.2_Missense_Mutation_p.G100E|RGS19_uc002yib.2_Missense_Mutation_p.G100E	NM_005873	NP_005864	P49795	RGS19_HUMAN	G protein signalling regulator 19	100	RGS.				autophagy|G-protein coupled receptor protein signaling pathway|negative regulation of signal transduction|small GTPase mediated signal transduction	Golgi apparatus|membrane fraction|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			skin(1)	1	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CACGCTGCGTCCCGCTGGGCT	0.632													9	20					0	0	0.006214	0	0
RGS19	10287	broad.mit.edu	37	20	62708228	62708228	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:62708228C>T	uc002yhy.2	-	2	279	c.12G>A	c.(10-12)CCG>CCA	p.P4P	RGS19_uc002yhz.2_Intron|RGS19_uc002yia.2_Silent_p.P4P|RGS19_uc002yib.2_Silent_p.P4P	NM_005873	NP_005864	P49795	RGS19_HUMAN	G protein signalling regulator 19	4					autophagy|G-protein coupled receptor protein signaling pathway|negative regulation of signal transduction|small GTPase mediated signal transduction	Golgi apparatus|membrane fraction|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			skin(1)	1	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CAGCCTCATGCGGGGTGGGCA	0.672													4	28					0	0	0.009096	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798133	31798133	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:31798133T>C	uc002yob.1	-	1	98	c.98A>G	c.(97-99)AAC>AGC	p.N33S		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	33						intermediate filament				ovary(1)|lung(1)	2						GTAGACCAGGTTGCTGGGGTA	0.577													71	366					0	0	0.003610	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798173	31798173	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:31798173G>A	uc002yob.1	-	1	58	c.58C>T	c.(58-60)CAC>TAC	p.H20Y		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	20						intermediate filament				ovary(1)|lung(1)	2						CCTGGGTAGTGCAAGTAACCC	0.557													19	509					0	0	0.008871	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31798176	31798176	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:31798176A>G	uc002yob.1	-	1	55	c.55T>C	c.(55-57)TTG>CTG	p.L19L		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	19						intermediate filament				ovary(1)|lung(1)	2						GGGTAGTGCAAGTAACCCCCG	0.557													26	517					0	0	0.004656	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959772	45959772	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45959772C>T	uc002zfh.1	-	1	307	c.262G>A	c.(262-264)GCT>ACT	p.A88T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	88	24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						gtgcagcaagccggctggcag	0.333													7	82					0	0	0.004482	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959788	45959788	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45959788C>A	uc002zfh.1	-	1	291	c.246G>T	c.(244-246)CAG>CAT	p.Q82H	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	82	5.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						ggcagctagacTGCTGGCAGC	0.348													6	97					6.5536e-12	6.84471e-12	0.003080	1	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994250	45994250	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994250G>A	uc002zfk.1	+	1	645	c.615G>A	c.(613-615)ACG>ACA	p.T205T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	205	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTCCTGCACGCCCTCGTGCT	0.662													7	181					0	0	0.008871	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994341	45994341	+	Missense_Mutation	SNP	A	C	C	rs430073		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994341A>C	uc002zfk.1	+	1	736	c.706A>C	c.(706-708)ACT>CCT	p.T236P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	236	36 X 5 AA repeats of C-C-X(3).|21.					keratin filament					0						CTGCTGCAAGACTGTCTGCTG	0.652													22	580					0	0	0.003610	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994409	45994409	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994409G>A	uc002zfk.1	+	1	804	c.774G>A	c.(772-774)CCG>CCA	p.P258P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	258	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTGCCAGCCGGCTTGCTGCA	0.622													17	660					0	0	0.002852	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994440	45994440	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994440G>T	uc002zfk.1	+	1	835	c.805G>T	c.(805-807)GCT>TCT	p.A269S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	269	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGCCAGCAGGCTTGCTGTGT	0.612													18	716					1.9806e-07	2.05221e-07	0.002299	1	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994442	45994442	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994442T>C	uc002zfk.1	+	1	837	c.807T>C	c.(805-807)GCT>GCC	p.A269A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	269	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCCAGCAGGCTTGCTGTGTGC	0.612													19	715					0	0	0.005524	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994595	45994595	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994595C>T	uc002zfk.1	+	1	990	c.960C>T	c.(958-960)CCC>CCT	p.P320P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	320	36 X 5 AA repeats of C-C-X(3).|29.					keratin filament					0						GCTGCGTGCCCGTCTGCTGCA	0.622													32	767					0	0	0.003610	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994737	45994737	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994737G>A	uc002zfk.1	+	1	1132	c.1102G>A	c.(1102-1104)GTG>ATG	p.V368M	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	368	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGCCGCCCCGTGTGCAGGCC	0.682													26	816					0	0	0.003271	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994739	45994739	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45994739G>A	uc002zfk.1	+	1	1134	c.1104G>A	c.(1102-1104)GTG>GTA	p.V368V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	368	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCCGCCCCGTGTGCAGGCCCG	0.677													28	817					0	0	0.003755	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999694	45999694	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45999694C>T	uc002zfl.1	-	1	788	c.762G>A	c.(760-762)CCG>CCA	p.P254P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	254	22.|22 X 5 AA repeats of C-C-X(3).					keratin filament					0						CGCAGGAGGCCGGGCGGCAGC	0.706													20	338					0	0	0.001882	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999711	45999712	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45999711_45999712CC>GT	uc002zfl.1	-	1	770_771	c.744_745GG>AC	c.(742-747)CAGGCC>CAACCC	p.A249P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	249	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						CAGCAGCTGGCCTGGTAGGAGG	0.718													23	345					0	0	0.004672	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999772	45999772	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45999772T>C	uc002zfl.1	-	1	710	c.684A>G	c.(682-684)ATA>ATG	p.I228M	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	228	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						CGGGCCTGCATATGGGGCGGC	0.677													40	634					0	0	0.006230	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	45999841	45999841	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:45999841A>G	uc002zfl.1	-	1	641	c.615T>C	c.(613-615)TGT>TGC	p.C205C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	205	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						AAGCCGGCTGACAGCTAGACT	0.632													22	855					0	0	0.002445	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000170	46000170	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46000170G>T	uc002zfl.1	-	1	312	c.286C>A	c.(286-288)CCT>ACT	p.P96T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	96	22 X 5 AA repeats of C-C-X(3).|6.					keratin filament					0						cagcacacaggcttgcagcag	0.264													18	515					1.55795e-14	1.63834e-14	0.001882	1	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000218	46000219	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46000218_46000219CG>TA	uc002zfl.1	-	1	263_264	c.237_238CG>TA	c.(235-240)TGCGCC>TGTACC	p.A80T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	80	4.|22 X 5 AA repeats of C-C-X(3).					keratin filament					0						ggggaggaggcgcagcaagccg	0.297													21	495					0	0	0.004672	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000259	46000259	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46000259G>A	uc002zfl.1	-	1	223	c.197C>T	c.(196-198)ACC>ATC	p.T66I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	66	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						gcaggAGCTGGTGCAGCCTGA	0.368													20	320					0	0	0.002299	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000292	46000292	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46000292G>A	uc002zfl.1	-	1	190	c.164C>T	c.(163-165)GCC>GTC	p.A55V	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	55	22 X 5 AA repeats of C-C-X(3).|2.					keratin filament					0						GGGCTCACAGGCCGCCTGGCA	0.488													30	296					0	0	0.004878	0	0
KRTAP10-5	386680	broad.mit.edu	37	21	46000343	46000343	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46000343G>C	uc002zfl.1	-	1	139	c.113C>G	c.(112-114)ACC>AGC	p.T38S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198694	NP_941967	P60370	KR105_HUMAN	keratin associated protein 10-5	38	22 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCAGACCAGGGTCAGGCAGGG	0.647													9	319					0	0	0.008291	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011423	46011423	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011423T>C	uc002zfm.2	-	1	964	c.943A>G	c.(943-945)ACC>GCC	p.T315A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	315	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						ACGCAGCAGGTGGACTTGCAC	0.682													17	440					0	0	0.002836	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011436	46011436	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011436A>G	uc002zfm.2	-	1	951	c.930T>C	c.(928-930)CCT>CCC	p.P310P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	310	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						ACTTGCACACAGGGTGGCAGA	0.677													19	468					0	0	0.005524	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011483	46011483	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011483C>T	uc002zfm.2	-	1	904	c.883G>A	c.(883-885)GCC>ACC	p.A295T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	295	26.|29 X 5 AA repeats of C-C-X(3).					keratin filament					0						CAGCAGGAGGCGGTGCAGCAA	0.677													28	541					0	0	0.009535	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011526	46011526	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011526T>A	uc002zfm.2	-	1	861	c.840A>T	c.(838-840)ACA>ACT	p.T280T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	280	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCAGCATGATGTGGAAGCCC	0.652													71	675					0	0	0.003610	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011562	46011562	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011562G>C	uc002zfm.2	-	1	825	c.804C>G	c.(802-804)CAC>CAG	p.H268Q	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	268	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						CACAGCAGGCGTGCTGGCAGG	0.642													48	693					0	0	0.003610	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011764	46011764	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46011764G>A	uc002zfm.2	-	1	623	c.602C>T	c.(601-603)ACC>ATC	p.T201I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	201	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCAGGAGCTGGTGCAGCCTGA	0.657													17	586					0	0	0.002299	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012355	46012355	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46012355G>C	uc002zfm.2	-	1	32	c.11C>G	c.(10-12)TCC>TGC	p.S4C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	4						keratin filament					0						GGACATGGTGGACGCGGCCAT	0.632													12	353					0	0	0.000978	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021151	46021151	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46021151G>A	uc002zfn.3	+	2	640	c.615G>A	c.(613-615)ACG>ACA	p.T205T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	210	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCTCCTGCACGCCCTCGTGCT	0.667													19	275					0	0	0.003954	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021185	46021185	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46021185G>A	uc002zfn.3	+	2	674	c.649G>A	c.(649-651)GCT>ACT	p.A217T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	222	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGCCAGCCGGCTTGCTGCAC	0.662													19	397					0	0	0.002445	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021229	46021229	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46021229T>C	uc002zfn.3	+	2	718	c.693T>C	c.(691-693)CCT>CCC	p.P231P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	236	30 X 5 AA repeats of C-C-X(3).|17.					keratin filament					0						GCTGTGTGCCTGTCTGCTGCA	0.652													23	661					0	0	0.004878	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021391	46021391	+	Silent	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46021391T>A	uc002zfn.3	+	2	880	c.855T>A	c.(853-855)ACT>ACA	p.T285T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						keratin filament					0						GGGCTTCCAGTTCATGCTGCC	0.652													47	446					0	0	0.003610	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021415	46021415	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46021415C>T	uc002zfn.3	+	2	904	c.879C>T	c.(877-879)TGC>TGT	p.C293C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	298	30 X 5 AA repeats of C-C-X(3).					keratin filament					0						AGTCTAGCTGCCAGCCGGCTT	0.662													15	382					0	0	0.008361	0	0
COL18A1	80781	broad.mit.edu	37	21	46896305	46896305	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46896305T>C	uc011afs.1	+	5	2105	c.2084T>C	c.(2083-2085)GTC>GCC	p.V695A	COL18A1_uc002zhg.2_Missense_Mutation_p.V280A|COL18A1_uc002zhi.2_Missense_Mutation_p.V460A	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	695	Nonhelical region 1 (NC1).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCACCCCCCGTCACCACGCCA	0.637													7	71					0	0	0.003080	0	0
DGCR5	26220	broad.mit.edu	37	22	18975281	18975281	+	RNA	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:18975281G>A	uc002zom.1	+	2		c.157G>A			DGCR5_uc002zon.1_RNA	NR_002733				Homo sapiens mRNA for KIAA1647 protein, partial cds.												0						TCTTGCTGTCGACATCTTTGA	0.498													17	103					0	0	0.007413	0	0
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	CA	CA	rs142470496	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:29091840_29091841TG>CA	uc003adu.1	-	11	1188_1189	c.1116_1117CA>TG	c.(1114-1119)TCCAAG>TCTGAG	p.K373E	CHEK2_uc003ads.1_Missense_Mutation_p.K152E|CHEK2_uc010gvh.1_Missense_Mutation_p.K282E|CHEK2_uc010gvi.1_Intron|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.K416E|CHEK2_uc003adv.1_Missense_Mutation_p.K344E|CHEK2_uc003adw.1_Missense_Mutation_p.K373E|CHEK2_uc003adx.1_Missense_Mutation_p.K152E|CHEK2_uc003ady.1_Missense_Mutation_p.K373E|CHEK2_uc003adz.1_Missense_Mutation_p.K177E	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	373	Protein kinase.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.K373E(2)|p.S372S(1)		central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						CCCAAAATCTTGGAGTGCCCAA	0.416			F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				7	29					0	0	0.004672	0	0
AP1B1	162	broad.mit.edu	37	22	29754808	29754808	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:29754808G>A	uc003afj.2	-	5	616	c.432C>T	c.(430-432)TGC>TGT	p.C144C	AP1B1_uc003afi.2_Silent_p.C144C|AP1B1_uc003afk.2_Silent_p.C144C|AP1B1_uc003afl.2_Silent_p.C144C	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	144					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						GCTTGGCCACGCACACAGCTG	0.582													9	38					0	0	0.008291	0	0
FOXRED2	80020	broad.mit.edu	37	22	36892230	36892230	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:36892230C>A	uc003apn.3	-	6	1516	c.1408G>T	c.(1408-1410)GAG>TAG	p.E470*	FOXRED2_uc003apm.3_Nonsense_Mutation_p.E22*|FOXRED2_uc003apo.3_Nonsense_Mutation_p.E470*|FOXRED2_uc003app.3_Nonsense_Mutation_p.E470*	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	470					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						GGGAACTCCTCCAGGTACTCA	0.587													9	68					0.00621372	0.00628222	0.006214	1	0
TRIOBP	11078	broad.mit.edu	37	22	38120006	38120006	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:38120006T>C	uc003atr.2	+	7	1714	c.1443T>C	c.(1441-1443)TGT>TGC	p.C481C	TRIOBP_uc003atu.2_Silent_p.C309C|TRIOBP_uc003atq.1_Silent_p.C481C|TRIOBP_uc003ats.1_Silent_p.C309C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	481					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					GAACATCCTGTGCCCAGCGGG	0.592													31	151					0	0	0.003214	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120669	38120669	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:38120669A>G	uc003atr.2	+	7	2377	c.2106A>G	c.(2104-2106)CAA>CAG	p.Q702Q	TRIOBP_uc003atu.2_Silent_p.Q530Q|TRIOBP_uc003atq.1_Silent_p.Q702Q|TRIOBP_uc003ats.1_Silent_p.Q530Q	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	702					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCTGTGCCCAACGGGACGATC	0.577													8	182					0	0	0.001855	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120676	38120676	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:38120676G>A	uc003atr.2	+	7	2384	c.2113G>A	c.(2113-2115)GAT>AAT	p.D705N	TRIOBP_uc003atu.2_Missense_Mutation_p.D533N|TRIOBP_uc003atq.1_Missense_Mutation_p.D705N|TRIOBP_uc003ats.1_Missense_Mutation_p.D533N	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	705					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCAACGGGACGATCCCAGAGC	0.582													8	184					0	0	0.001855	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120707	38120707	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr22:38120707C>T	uc003atr.2	+	7	2415	c.2144C>T	c.(2143-2145)ACC>ATC	p.T715I	TRIOBP_uc003atu.2_Missense_Mutation_p.T543I|TRIOBP_uc003atq.1_Missense_Mutation_p.T715I|TRIOBP_uc003ats.1_Missense_Mutation_p.T543I	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	715				RTTQQEN -> KSTFGCL (in Ref. 7; BAB33332).	actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AACAGAACCACCCAACAAGAG	0.577													17	189					0	0	0.006122	0	0
SCN11A	11280	broad.mit.edu	37	3	38888327	38888327	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:38888327C>T	uc011ays.1	-	26	5433	c.5234G>A	c.(5233-5235)CGA>CAA	p.R1745Q		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1745					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CATGTACTTTCGAAAGGCCTT	0.378													7	74					0	0	0.003080	0	0
MAP4	4134	broad.mit.edu	37	3	47958144	47958144	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:47958144A>G	uc003csb.2	-	7	1699	c.1173T>C	c.(1171-1173)GCT>GCC	p.A391A	MAP4_uc003csc.3_Silent_p.A391A|MAP4_uc011bbf.1_Silent_p.A368A|MAP4_uc003csf.3_Silent_p.A408A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	391	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		CCTTGGAAGGAGCCAAGTCCA	0.443													6	109					0	0	0.000978	0	0
MAP4	4134	broad.mit.edu	37	3	47958147	47958147	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:47958147C>T	uc003csb.2	-	7	1696	c.1170G>A	c.(1168-1170)TTG>TTA	p.L390L	MAP4_uc003csc.3_Silent_p.L390L|MAP4_uc011bbf.1_Silent_p.L367L|MAP4_uc003csf.3_Silent_p.L407L	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	390	17 X 14 AA tandem repeats.|26 residues 2.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGGAAGGAGCCAAGTCCATTT	0.448													6	111					0	0	0.000978	0	0
RNF123	63891	broad.mit.edu	37	3	49749980	49749981	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:49749980_49749981AG>CT	uc003cxh.2	+	27	2651_2652	c.2565_2566AG>CT	c.(2563-2568)ACAGGG>ACCTGG	p.G856W	RNF123_uc010hky.1_Missense_Mutation_p.G518W|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	856						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GTGATCGCACAGGGTCTCTCTT	0.579													7	35					0	0	0.004672	0	0
MYLK	4638	broad.mit.edu	37	3	123419091	123419091	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:123419091A>G	uc003ego.2	-	18	3506	c.3224T>C	c.(3223-3225)GTG>GCG	p.V1075A	MYLK_uc011bjw.1_Missense_Mutation_p.V1075A|MYLK_uc003egp.2_Missense_Mutation_p.V1006A|MYLK_uc003egq.2_Missense_Mutation_p.V1075A|MYLK_uc003egr.2_Missense_Mutation_p.V1006A|MYLK_uc003egs.2_Missense_Mutation_p.V899A|MYLK_uc003egt.2_Missense_Mutation_p.V266A	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1075	Actin-binding (calcium/calmodulin- insensitive) (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CTTGCAGTTCACATCATTCTT	0.502													30	861					0	0	0.005443	0	0
MYLK	4638	broad.mit.edu	37	3	123419189	123419189	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:123419189C>T	uc003ego.2	-	18	3408	c.3126G>A	c.(3124-3126)AAG>AAA	p.K1042K	MYLK_uc011bjw.1_Silent_p.K1042K|MYLK_uc003egp.2_Silent_p.K973K|MYLK_uc003egq.2_Silent_p.K1042K|MYLK_uc003egr.2_Silent_p.K973K|MYLK_uc003egs.2_Silent_p.K866K|MYLK_uc003egt.2_Silent_p.K233K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1042	6 X 12 AA approximate tandem repeats.|2-5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCTCGGCAGGCTTGGCGTTGC	0.547													23	636					0	0	0.003610	0	0
ZNF876P	642280	broad.mit.edu	37	4	247456	247456	+	RNA	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:247456C>G	uc010iba.2	+	2		c.290C>G				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						GAAGAATTTACAATTAAGGAA	0.363													5	54					0	0	0.004482	0	0
ZNF876P	642280	broad.mit.edu	37	4	247464	247464	+	RNA	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:247464G>A	uc010iba.2	+	2		c.298G>A				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						TACAATTAAGGAAAGGCTCTA	0.368													8	49					0	0	0.000978	0	0
ZNF876P	642280	broad.mit.edu	37	4	248208	248208	+	RNA	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:248208T>A	uc010iba.2	+	2		c.1042T>A				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						TTCATACTGGTGAGAAACCCT	0.368													5	58					0	0	0.001984	0	0
ZNF732	654254	broad.mit.edu	37	4	299185	299185	+	RNA	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:299185A>G	uc010ibb.1	-	1		c.79T>C						B4DXR9	ZN732_HUMAN	Homo sapiens chromosome 4 isolate HA_003619 mRNA sequence.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGGCTGTGACCGAATCACC	0.617													4	28					0	0	0.009096	0	0
ZNF732	654254	broad.mit.edu	37	4	299196	299196	+	RNA	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:299196G>A	uc010ibb.1	-	1		c.68C>T						B4DXR9	ZN732_HUMAN	Homo sapiens chromosome 4 isolate HA_003619 mRNA sequence.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCGAATCACCGACGCCTCCCT	0.627													4	23					0	0	0.009096	0	0
ZNF732	654254	broad.mit.edu	37	4	299198	299198	+	RNA	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:299198C>G	uc010ibb.1	-	1		c.66G>C						B4DXR9	ZN732_HUMAN	Homo sapiens chromosome 4 isolate HA_003619 mRNA sequence.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAATCACCGACGCCTCCCTGA	0.627													4	23					0	0	0.009096	0	0
ZNF141	7700	broad.mit.edu	37	4	366982	366982	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:366982A>G	uc003gaa.2	+	5	934	c.756A>G	c.(754-756)GAA>GAG	p.E252E	ZNF141_uc003gab.2_Intron	NM_003441	NP_003432	Q15928	ZN141_HUMAN	zinc finger protein 141	252					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0						ATACTGGAGAAAAACCCTATA	0.373													6	73					0	0	0.003163	0	0
ZNF721	170960	broad.mit.edu	37	4	436174	436174	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:436174T>C	uc003gag.2	-	3	2773	c.2082A>G	c.(2080-2082)GAA>GAG	p.E694E	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Silent_p.E726E|ZNF721_uc010ibe.2_Silent_p.E682E	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	694						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTAAGGTTTTTCTCCAGTAT	0.403													4	46					0	0	0.003755	0	0
ZNF721	170960	broad.mit.edu	37	4	436583	436583	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:436583G>T	uc003gag.2	-	3	2364	c.1673C>A	c.(1672-1674)ACA>AAA	p.T558K	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.T590K|ZNF721_uc010ibe.2_Missense_Mutation_p.T546K	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	558						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TTCTTCACATGTGTAGGGTTT	0.418													12	101					8.60227e-14	9.03584e-14	0.004007	1	0
ZNF721	170960	broad.mit.edu	37	4	436658	436658	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:436658A>T	uc003gag.2	-	3	2289	c.1598T>A	c.(1597-1599)GTA>GAA	p.V533E	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.V565E|ZNF721_uc010ibe.2_Missense_Mutation_p.V521E	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	533						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TTTGCCACATACTTCACATGT	0.398													6	83					0	0	0.001368	0	0
ZNF721	170960	broad.mit.edu	37	4	437330	437330	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:437330A>T	uc003gag.2	-	3	1617	c.926T>A	c.(925-927)GTA>GAA	p.V309E	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.V341E|ZNF721_uc010ibe.2_Missense_Mutation_p.V297E	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	309						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TTTGCCACATACTTCACATGT	0.388													8	78					0	0	0.001855	0	0
REST	5978	broad.mit.edu	37	4	57797217	57797217	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:57797217G>A	uc003hch.2	+	4	2540	c.2193G>A	c.(2191-2193)ATG>ATA	p.M731I	REST_uc003hci.2_Missense_Mutation_p.M731I|REST_uc010ihf.2_Missense_Mutation_p.M405I	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	731	Pro-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					CTGTTCAGATGGAGCTGTCTC	0.562													8	239					0	0	0.004990	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68784830	68784830	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:68784830G>A	uc003hdr.1	-	8	943	c.822C>T	c.(820-822)TAC>TAT	p.Y274Y	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Silent_p.Y271Y	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	274	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						CAGCAATGTCGTACTCTCTTG	0.428													6	51					0	0	0.001168	0	0
UGT2B10	7365	broad.mit.edu	37	4	69682374	69682374	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69682374A>G	uc003hee.2	+	1	662	c.637A>G	c.(637-639)ATG>GTG	p.M213V	UGT2B10_uc011cam.1_Intron	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	213					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GGTAAAAAATATGCTCTATGT	0.323													6	53					0	0	0.008291	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885549	69885549	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885549C>A	uc011cao.1	-	4	576	c.440G>T	c.(439-441)GGA>GTA	p.G147V	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	184					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AATAAATCCTCCACTGTGCCT	0.423													11	241					1.3612e-06	1.4025e-06	0.003163	1	0
UGT2B10	7365	broad.mit.edu	37	4	69885552	69885552	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885552C>T	uc011cao.1	-	4	573	c.437G>A	c.(436-438)AGT>AAT	p.S146N	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	183					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AAATCCTCCACTGTGCCTTTC	0.423													16	254					0	0	0.008871	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885565	69885565	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885565A>G	uc011cao.1	-	4	560	c.424T>C	c.(424-426)TTT>CTT	p.F142L	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	179					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGCCTTTCAAATGAGTAGCCA	0.418													12	306					0	0	0.006122	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885568	69885568	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885568A>T	uc011cao.1	-	4	557	c.421T>A	c.(421-423)TCA>ACA	p.S141T	UGT2B10_uc011can.1_Intron			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	178					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CTTTCAAATGAGTAGCCAGGA	0.423													13	323					0	0	0.007413	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885783	69885783	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885783A>G	uc011cao.1	-	4	342	c.206T>C	c.(205-207)TTA>TCA	p.L69S	UGT2B10_uc011can.1_Missense_Mutation_p.L69S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	106					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGAAAAATATAACCAAAATGT	0.289													5	58					0	0	0.000602	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885791	69885791	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885791T>C	uc011cao.1	-	4	334	c.198A>G	c.(196-198)ACA>ACG	p.T66T	UGT2B10_uc011can.1_Silent_p.T66T			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	103					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ATAACCAAAATGTATCTTTTG	0.303													8	56					0	0	0.003080	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885794	69885794	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885794A>G	uc011cao.1	-	4	331	c.195T>C	c.(193-195)GAT>GAC	p.D65D	UGT2B10_uc011can.1_Silent_p.D65D			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	102					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ACCAAAATGTATCTTTTGGAA	0.299													7	62					0	0	0.001984	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885951	69885951	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885951T>A	uc011cao.1	-	2	154	c.18A>T	c.(16-18)AAA>AAT	p.K6N	UGT2B10_uc011can.1_Missense_Mutation_p.K6N			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	43					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GAACAAGTTCTTTCAGGATTG	0.443													17	400					0	0	0.008871	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885953	69885953	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885953T>C	uc011cao.1	-	2	152	c.16A>G	c.(16-18)AAA>GAA	p.K6E	UGT2B10_uc011can.1_Missense_Mutation_p.K6E			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	43					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ACAAGTTCTTTCAGGATTGTC	0.448													22	399					0	0	0.003330	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885966	69885966	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885966C>T	uc011cao.1	-	2	139	c.3G>A	c.(1-3)ATG>ATA	p.M1I	UGT2B10_uc011can.1_Missense_Mutation_p.M1I			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	38					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GGATTGTCTTCATATTCATCC	0.453													17	420					0	0	0.004007	0	0
UGT2B10	7365	broad.mit.edu	37	4	69885968	69885968	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69885968T>C	uc011cao.1	-	2	137	c.1A>G	c.(1-3)ATG>GTG	p.M1V	UGT2B10_uc011can.1_Missense_Mutation_p.M1V			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	38					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						ATTGTCTTCATATTCATCCAA	0.453													19	415					0	0	0.006122	0	0
UGT2B11	10720	broad.mit.edu	37	4	70078323	70078323	+	Missense_Mutation	SNP	A	G	G	rs143777219	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:70078323A>G	uc003heh.2	-	2	847	c.838T>C	c.(838-840)TTC>CTC	p.F280L	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	280					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TTGCAGTGGAATCCTCCAACA	0.378													5	92					0	0	0.001168	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361517	70361517	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:70361517C>T	uc003hek.3	-	1	110	c.63G>A	c.(61-63)GGG>GGA	p.G21G	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Silent_p.G21G	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	21					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TTCCACAACTCCCAGAGCTAA	0.468													7	154					0	0	0.001984	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361528	70361528	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:70361528A>T	uc003hek.3	-	1	99	c.52T>A	c.(52-54)TTT>ATT	p.F18I	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.F18I	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	18					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CCAGAGCTAAAGTAACAGCTC	0.458													7	150					0	0	0.001984	0	0
SEC24D	9871	broad.mit.edu	37	4	119745847	119745847	+	Missense_Mutation	SNP	G	A	A	rs142063505		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:119745847G>A	uc003ici.3	-	3	448	c.176C>T	c.(175-177)CCG>CTG	p.P59L	SEC24D_uc003icj.3_Missense_Mutation_p.P59L|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	59	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TGGGGGACCCGGAGGCAACAT	0.542													25	150					0	0	0.007291	0	0
PRSS48	345062	broad.mit.edu	37	4	152200952	152200953	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152200952_152200953TG>CT	uc011cif.1	+	2	57_58	c.57_58TG>CT	c.(55-60)TGTGGG>TGCTGG	p.G20W	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	20					proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CTCTAGTGTGTGGGCAACCTGT	0.515													16	622					0	0	0.004672	0	0
PRSS48	345062	broad.mit.edu	37	4	152200956	152200957	+	Nonsense_Mutation	DNP	CA	TG	TG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152200956_152200957CA>TG	uc011cif.1	+	2	61_62	c.61_62CA>TG	c.(61-63)CAA>TGA	p.Q21*	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	21					proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						AGTGTGTGGGCAACCTGTATAC	0.515													18	623					0	0	0.004672	0	0
PRSS48	345062	broad.mit.edu	37	4	152201031	152201031	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201031C>T	uc011cif.1	+	2	136	c.136C>T	c.(136-138)CAC>TAC	p.H46Y	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	46	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GGTCAGCCTACACTTTGACCA	0.537													31	660					0	0	0.005524	0	0
PRSS48	345062	broad.mit.edu	37	4	152201036	152201036	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201036T>G	uc011cif.1	+	2	141	c.141T>G	c.(139-141)TTT>TTG	p.F47L	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	47	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GCCTACACTTTGACCACAACT	0.542													38	681					0	0	0.003610	0	0
PRSS48	345062	broad.mit.edu	37	4	152201038	152201038	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201038A>G	uc011cif.1	+	2	143	c.143A>G	c.(142-144)GAC>GGC	p.D48G	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	48	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CTACACTTTGACCACAACTTT	0.542													42	687					0	0	0.003610	0	0
PRSS48	345062	broad.mit.edu	37	4	152201044	152201044	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201044A>G	uc011cif.1	+	2	149	c.149A>G	c.(148-150)AAC>AGC	p.N50S	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	50	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TTTGACCACAACTTTATCTGT	0.552													33	730					0	0	0.004289	0	0
PRSS48	345062	broad.mit.edu	37	4	152201058	152201058	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201058G>T	uc011cif.1	+	2	163	c.163G>T	c.(163-165)GGT>TGT	p.G55C	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	55	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						TATCTGTGGAGGTTCCCTCGT	0.532													52	755					1.33487e-58	1.41675e-58	0.003610	1	0
PRSS48	345062	broad.mit.edu	37	4	152201066	152201066	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201066C>G	uc011cif.1	+	2	171	c.171C>G	c.(169-171)CTC>CTG	p.L57L	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	57	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GAGGTTCCCTCGTCAGTGAGA	0.532													53	787					0	0	0.003610	0	0
PRSS48	345062	broad.mit.edu	37	4	152201080	152201080	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201080T>G	uc011cif.1	+	2	185	c.185T>G	c.(184-186)TTG>TGG	p.L62W	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	62	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						AGTGAGAGGTTGATACTGACA	0.512													36	814					0	0	0.003755	0	0
PRSS48	345062	broad.mit.edu	37	4	152201091	152201091	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:152201091G>A	uc011cif.1	+	2	196	c.196G>A	c.(196-198)GCA>ACA	p.A66T	PRSS48_uc011cig.1_Intron	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	66	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						GATACTGACAGCAGCACACTG	0.493													36	801					0	0	0.004289	0	0
C5orf49	134121	broad.mit.edu	37	5	7851018	7851018	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:7851018T>A	uc003jea.3	-	1	247	c.117A>T	c.(115-117)AAA>AAT	p.K39N		NM_001089584	NP_001083053	A4QMS7	CE049_HUMAN	hypothetical protein LOC134121	39											0						AGCTGTGCTCTTTGGGGTCCA	0.597													5	10					0	0	0.000602	0	0
PRDM9	56979	broad.mit.edu	37	5	23527052	23527052	+	Missense_Mutation	SNP	C	T	T	rs111393391		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:23527052C>T	uc003jgo.2	+	11	2037	c.1855C>T	c.(1855-1857)CGG>TGG	p.R619W		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	619	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGGCTTTAGCCGGCAGTCAGT	0.622										HNSCC(3;0.000094)			11	102					0	0	0.000978	0	0
TAF9	6880	broad.mit.edu	37	5	68660803	68660803	+	Silent	SNP	G	A	A	rs149295876		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:68660803G>A	uc003jwc.1	-	2	1094	c.762C>T	c.(760-762)GAC>GAT	p.D254D	TAF9_uc003jwa.2_Intron|TAF9_uc003jwb.2_Intron|TAF9_uc003jwd.1_Silent_p.D254D|TAF9_uc003jwe.1_Silent_p.D254D|TAF9_uc003jwf.1_Silent_p.D254D	NM_003187	NP_003178	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	254	Poly-Asp.				histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		catcatcatcgtcatcatcat	0.244													7	37					0	0	0.001855	0	0
POC5	134359	broad.mit.edu	37	5	74970339	74970339	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:74970339G>A	uc003keh.3	-	12	1846	c.1649C>T	c.(1648-1650)TCA>TTA	p.S550L	POC5_uc010izu.2_Missense_Mutation_p.S374L|POC5_uc003keg.3_Missense_Mutation_p.S525L	NM_001099271	NP_001092741	Q8NA72	POC5_HUMAN	proteome of centriole 5 isoform 1	550					cell cycle	centriole				lung(1)	1						TCTGGAAGCTGAGGTACTACT	0.418													26	121					0	0	0.009535	0	0
AFF4	27125	broad.mit.edu	37	5	132216777	132216777	+	Missense_Mutation	SNP	G	A	A	rs112871745		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:132216777G>A	uc003kyd.2	-	21	3874	c.3466C>T	c.(3466-3468)CGC>TGC	p.R1156C	AFF4_uc011cxk.1_Missense_Mutation_p.R834C	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	1156					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCATCCTGGCGAAGCCAGTGC	0.448													6	34					0	0	0.001168	0	0
RREB1	6239	broad.mit.edu	37	6	7231095	7231095	+	Missense_Mutation	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:7231095C>A	uc003mxc.2	+	10	3153	c.2763C>A	c.(2761-2763)AGC>AGA	p.S921R	RREB1_uc003mxb.2_Missense_Mutation_p.S921R|RREB1_uc010jnx.2_Missense_Mutation_p.S921R	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	921					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCTTTCTGAGCCCTTCTTCCC	0.577													6	49					8.12818e-05	8.30016e-05	0.001984	1	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775319	27775319	+	Silent	SNP	G	A	A	rs141178835		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775319G>A	uc003njl.2	-	1	391	c.366C>T	c.(364-366)TAC>TAT	p.Y122Y	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	122					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGGAGCTGGTGTACTTGGTGA	0.562													28	219					0	0	0.005443	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775346	27775346	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775346C>G	uc003njl.2	-	1	364	c.339G>C	c.(337-339)TCG>TCC	p.S113S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	113					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGGTGCCCTCCGACACCGCGT	0.582													16	261					0	0	0.004990	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775352	27775352	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775352C>G	uc003njl.2	-	1	358	c.333G>C	c.(331-333)GCG>GCC	p.A111A	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	111					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCTCCGACACCGCGTGCTTGG	0.597													20	268					0	0	0.001882	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775366	27775366	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775366G>A	uc003njl.2	-	1	344	c.319C>T	c.(319-321)CTG>TTG	p.L107L	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	107					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGCTTGGCCAGCTCCCCCGGA	0.612													11	263					0	0	0.001368	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775409	27775409	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775409G>C	uc003njl.2	-	1	301	c.276C>G	c.(274-276)TCC>TCG	p.S92S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	92					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGATCTCCCTGGAGGTGATGG	0.632													13	322					0	0	0.001368	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775412	27775412	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775412G>A	uc003njl.2	-	1	298	c.273C>T	c.(271-273)ACC>ACT	p.T91T	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	91					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTCCCTGGAGGTGATGGTCG	0.632													14	324					0	0	0.001855	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775508	27775508	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775508G>A	uc003njl.2	-	1	202	c.177C>T	c.(175-177)GCC>GCT	p.A59A	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	59					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TGATTCCCATGGCCTTAGAAG	0.582													39	691					0	0	0.007835	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775514	27775514	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775514A>G	uc003njl.2	-	1	196	c.171T>C	c.(169-171)TCT>TCC	p.S57S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	57					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCATGGCCTTAGAAGAGATGC	0.577													47	712					0	0	0.003610	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775562	27775562	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775562G>A	uc003njl.2	-	1	148	c.123C>T	c.(121-123)TAC>TAT	p.Y41Y	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	41					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CCTTGTACACGTACACGGAGT	0.587													26	700					0	0	0.006320	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775568	27775568	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775568G>A	uc003njl.2	-	1	142	c.117C>T	c.(115-117)TCC>TCT	p.S39S	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	39					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ACACGTACACGGAGTAGCTCT	0.582													26	675					0	0	0.006320	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775646	27775646	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27775646C>T	uc003njl.2	-	1	64	c.39G>A	c.(37-39)AAG>AAA	p.K13K	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	13					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTTGGAGCCCTTCTTCGGGG	0.517													24	480					0	0	0.006320	0	0
HIST1H3H	8357	broad.mit.edu	37	6	27776335	27776335	+	5'Flank	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27776335A>G	uc003njm.2	+						HIST1H2BL_uc003njl.2_5'Flank	NM_003536	NP_003527	P68431	H31_HUMAN	histone cluster 1, H3h						blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						AGGCCGTGCTACTGCCCAAGA	0.557													13	280					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782156	27782156	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782156A>G	uc003njn.1	-	1	363	c.363T>C	c.(361-363)ACT>ACC	p.T121T	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	121					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGTGGCTCTCAGTTTTCTTTG	0.493													13	415					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782159	27782159	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782159T>C	uc003njn.1	-	1	360	c.360A>G	c.(358-360)AAA>AAG	p.K120K	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	120					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GGCTCTCAGTTTTCTTTGGCA	0.493													12	422					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782165	27782165	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782165T>G	uc003njn.1	-	1	354	c.354A>C	c.(352-354)CCA>CCC	p.P118P	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	118					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CAGTTTTCTTTGGCAGCAGCA	0.498													14	418					0	0	0.003610	0	0
HIST1H2AJ	8331	broad.mit.edu	37	6	27782171	27782171	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782171C>T	uc003njn.1	-	1	348	c.348G>A	c.(346-348)CTG>CTA	p.L116L	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	116					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCTTTGGCAGCAGCACGGCCT	0.512													21	421					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782938	27782938	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782938T>C	uc003njo.2	+	1	117	c.117T>C	c.(115-117)TCT>TCC	p.S39S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	39					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						AGAGCTACTCTGTGTATGTGT	0.507													25	651					0	0	0.002445	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782944	27782944	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782944T>C	uc003njo.2	+	1	123	c.123T>C	c.(121-123)TAT>TAC	p.Y41Y	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	41					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						ACTCTGTGTATGTGTACAAGG	0.512													31	667					0	0	0.004289	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782992	27782992	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782992C>T	uc003njo.2	+	1	171	c.171C>T	c.(169-171)TCC>TCT	p.S57S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	57					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						GCATCTCTTCCAAGGCTATGG	0.542													41	615					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782998	27782998	+	Silent	SNP	T	C	C	rs143234094		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27782998T>C	uc003njo.2	+	1	177	c.177T>C	c.(175-177)GCT>GCC	p.A59A	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	59					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CTTCCAAGGCTATGGGAATCA	0.542													42	575					0	0	0.003610	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783040	27783040	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783040T>C	uc003njo.2	+	1	219	c.219T>C	c.(217-219)CGT>CGC	p.R73R	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	73					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						TCTTTGAGCGTATCGCCGGAG	0.567													32	401					0	0	0.007835	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783070	27783070	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783070T>C	uc003njo.2	+	1	249	c.249T>C	c.(247-249)CAT>CAC	p.H83H	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	83					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						GCCTGGCGCATTACAACAAGC	0.597													28	301					0	0	0.009535	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783094	27783094	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783094T>C	uc003njo.2	+	1	273	c.273T>C	c.(271-273)ACT>ACC	p.T91T	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	91					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CGACCATCACTTCGAGGGAGA	0.587													22	247					0	0	0.003954	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783097	27783097	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783097G>C	uc003njo.2	+	1	276	c.276G>C	c.(274-276)TCG>TCC	p.S92S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	92					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CCATCACTTCGAGGGAGATCC	0.587													22	238					0	0	0.003954	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783112	27783112	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783112G>C	uc003njo.2	+	1	291	c.291G>C	c.(289-291)ACG>ACC	p.T97T	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	97					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						AGATCCAGACGGCCGTGCGCC	0.602													12	216					0	0	0.003163	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783187	27783187	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:27783187T>C	uc003njo.2	+	1	366	c.366T>C	c.(364-366)TAT>TAC	p.Y122Y	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	122					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						TCACCAAGTATACCAGCTCCA	0.597													28	207					0	0	0.005443	0	0
ABCF1	23	broad.mit.edu	37	6	30539290	30539290	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:30539290C>T	uc003nql.2	+	1	121	c.26C>T	c.(25-27)CCG>CTG	p.P9L	ABCF1_uc003nqk.2_Missense_Mutation_p.P9L|ABCF1_uc003nqm.2_Missense_Mutation_p.P9L|ABCF1_uc010jsb.2_Missense_Mutation_p.P9L	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	9					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						AAGCAGCAGCCGCCGGAGCCC	0.667													23	117					0	0	0.001882	0	0
ABCF1	23	broad.mit.edu	37	6	30539323	30539323	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:30539323G>A	uc003nql.2	+	1	154	c.59G>A	c.(58-60)AGC>AAC	p.S20N	ABCF1_uc003nqk.2_Missense_Mutation_p.S20N|ABCF1_uc003nqm.2_Missense_Mutation_p.S20N|ABCF1_uc010jsb.2_Missense_Mutation_p.S20N	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	20					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						GACGGAGAGAGCACGAGCCCA	0.637													18	117					0	0	0.010504	0	0
MUC21	394263	broad.mit.edu	37	6	30955189	30955189	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:30955189G>A	uc003nsh.2	+	2	1488	c.1237G>A	c.(1237-1239)GTG>ATG	p.V413M	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	413	26.|Ser-rich.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						GTCCAGCACAGTGTCCAGTGG	0.627													12	541					0	0	0.001855	0	0
MUC21	394263	broad.mit.edu	37	6	30955191	30955191	+	Silent	SNP	G	C	C	rs56644482		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:30955191G>C	uc003nsh.2	+	2	1490	c.1239G>C	c.(1237-1239)GTG>GTC	p.V413V	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	413	26.|Ser-rich.|28 X 15 AA approximate tandem repeats.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|skin(1)	2						CCAGCACAGTGTCCAGTGGGG	0.627													11	535					0	0	0.001855	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778229	31778229	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778229A>G	uc003nxh.2	-	2	1704	c.1521T>C	c.(1519-1521)AAT>AAC	p.N507N	HSPA1L_uc010jte.2_Silent_p.N507N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	507					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGCCCTTGTCATTGGTGATGG	0.493													30	571					0	0	0.008361	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778277	31778277	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778277T>C	uc003nxh.2	-	2	1656	c.1473A>G	c.(1471-1473)ACA>ACG	p.T491T	HSPA1L_uc010jte.2_Silent_p.T491T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	491					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTCCGTGGCTGTGACATTGA	0.547													26	405					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778289	31778289	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778289A>G	uc003nxh.2	-	2	1644	c.1461T>C	c.(1459-1461)ATT>ATC	p.I487I	HSPA1L_uc010jte.2_Silent_p.I487I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	487					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGACATTGAGAATACCATTGG	0.547													14	338					0	0	0.002445	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778304	31778304	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778304A>G	uc003nxh.2	-	2	1629	c.1446T>C	c.(1444-1446)ATT>ATC	p.I482I	HSPA1L_uc010jte.2_Silent_p.I482I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	482					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTGGCATCAATGTCAAACG	0.552													15	326					0	0	0.006122	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778310	31778310	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778310A>G	uc003nxh.2	-	2	1623	c.1440T>C	c.(1438-1440)TTT>TTC	p.F480F	HSPA1L_uc010jte.2_Silent_p.F480F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	480					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATCAATGTCAAACGTCACCT	0.552													23	303					0	0	0.002780	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778313	31778313	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778313C>G	uc003nxh.2	-	2	1620	c.1437G>C	c.(1435-1437)ACG>ACC	p.T479T	HSPA1L_uc010jte.2_Silent_p.T479T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	479					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAATGTCAAACGTCACCTCGA	0.552													21	306					0	0	0.010504	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778328	31778328	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778328A>G	uc003nxh.2	-	2	1605	c.1422T>C	c.(1420-1422)CCT>CCC	p.P474P	HSPA1L_uc010jte.2_Silent_p.P474P	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	474					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTCGATCTGAGGAACTCCCC	0.537													16	321					0	0	0.010504	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778331	31778331	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778331A>C	uc003nxh.2	-	2	1602	c.1419T>G	c.(1417-1419)GTT>GTG	p.V473V	HSPA1L_uc010jte.2_Silent_p.V473V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	473					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CGATCTGAGGAACTCCCCTGG	0.542													19	319					0	0	0.002780	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778343	31778343	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778343T>G	uc003nxh.2	-	2	1590	c.1407A>C	c.(1405-1407)GCA>GCC	p.A469A	HSPA1L_uc010jte.2_Silent_p.A469A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	469					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTCCCCTGGGTGCTGGAGGGA	0.557													16	347					0	0	0.006122	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778367	31778367	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778367A>G	uc003nxh.2	-	2	1566	c.1383T>C	c.(1381-1383)TTT>TTC	p.F461F	HSPA1L_uc010jte.2_Silent_p.F461F	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	461					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGTCAGGTCAAACCGCCCCA	0.542													34	443					0	0	0.002852	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778370	31778370	+	Silent	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778370C>G	uc003nxh.2	-	2	1563	c.1380G>C	c.(1378-1380)CGG>CGC	p.R460R	HSPA1L_uc010jte.2_Silent_p.R460R	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	460					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCAGGTCAAACCGCCCCAGCA	0.547													43	465					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778448	31778448	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778448A>G	uc003nxh.2	-	2	1485	c.1302T>C	c.(1300-1302)TCT>TCC	p.S434S	HSPA1L_uc010jte.2_Silent_p.S434S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	434					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GTTGGTTGTCAGAGTAGGTGG	0.587													42	829					0	0	0.006999	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778463	31778463	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778463A>G	uc003nxh.2	-	2	1470	c.1287T>C	c.(1285-1287)ATT>ATC	p.I429I	HSPA1L_uc010jte.2_Silent_p.I429I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	429					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGGTGGTGAAAATCTGTGTCT	0.602													30	804					0	0	0.003271	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778469	31778469	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778469T>C	uc003nxh.2	-	2	1464	c.1281A>G	c.(1279-1281)ACA>ACG	p.T427T	HSPA1L_uc010jte.2_Silent_p.T427T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	427					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGAAAATCTGTGTCTGCTTGG	0.607													35	769					0	0	0.006230	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778502	31778502	+	Silent	SNP	T	G	G	rs17857014		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778502T>G	uc003nxh.2	-	2	1431	c.1248A>C	c.(1246-1248)ATA>ATC	p.I416I	HSPA1L_uc010jte.2_Silent_p.I416I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	416				I -> M (in Ref. 7; AAH34483).	response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTTGCGCTTTATCAGGGCAG	0.607													39	617					0	0	0.008740	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778523	31778523	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778523C>T	uc003nxh.2	-	2	1410	c.1227G>A	c.(1225-1227)GGG>GGA	p.G409G	HSPA1L_uc010jte.2_Silent_p.G409G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	409					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCATCACGCCCCCAGCCGTCT	0.602													56	537					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778544	31778544	+	Silent	SNP	G	C	C	rs146348020	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778544G>C	uc003nxh.2	-	2	1389	c.1206C>G	c.(1204-1206)TCC>TCG	p.S402S	HSPA1L_uc010jte.2_Silent_p.S402S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	402					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCAGCCCCAGGGACAGGGGAG	0.597													26	490					0	0	0.004656	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778580	31778580	+	Silent	SNP	T	C	C	rs143774785		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778580T>C	uc003nxh.2	-	2	1353	c.1170A>G	c.(1168-1170)GTA>GTG	p.V390V	HSPA1L_uc010jte.2_Silent_p.V390V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	390					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GCAGGTCCTGTACCTTCTCAG	0.597													39	398					0	0	0.009718	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778583	31778583	+	Missense_Mutation	SNP	C	G	G	rs148130784		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778583C>G	uc003nxh.2	-	2	1350	c.1167G>C	c.(1165-1167)AAG>AAC	p.K389N	HSPA1L_uc010jte.2_Missense_Mutation_p.K389N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	389					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGTCCTGTACCTTCTCAGACT	0.592													37	394					0	0	0.006999	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778589	31778589	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778589A>G	uc003nxh.2	-	2	1344	c.1161T>C	c.(1159-1161)TCT>TCC	p.S387S	HSPA1L_uc010jte.2_Silent_p.S387S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	387					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GTACCTTCTCAGACTTGTCCC	0.582													35	391					0	0	0.005524	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778613	31778613	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778613T>C	uc003nxh.2	-	2	1320	c.1137A>G	c.(1135-1137)GCA>GCG	p.A379A	HSPA1L_uc010jte.2_Silent_p.A379A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	379					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCAGGATGGCTGCTTGTACCG	0.597													18	345					0	0	0.008871	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778616	31778616	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778616T>C	uc003nxh.2	-	2	1317	c.1134A>G	c.(1132-1134)CAA>CAG	p.Q378Q	HSPA1L_uc010jte.2_Silent_p.Q378Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	378					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GGATGGCTGCTTGTACCGCAG	0.602													17	340					0	0	0.010504	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778619	31778619	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778619T>C	uc003nxh.2	-	2	1314	c.1131A>G	c.(1129-1131)GTA>GTG	p.V377V	HSPA1L_uc010jte.2_Silent_p.V377V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	377					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGGCTGCTTGTACCGCAGCCC	0.607													13	340					0	0	0.004007	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778637	31778637	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778637T>C	uc003nxh.2	-	2	1296	c.1113A>G	c.(1111-1113)GTA>GTG	p.V371V	HSPA1L_uc010jte.2_Silent_p.V371V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	371					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCCCATATGCTACGGCCTCAT	0.597													14	308					0	0	0.004990	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778640	31778640	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778640G>A	uc003nxh.2	-	2	1293	c.1110C>T	c.(1108-1110)GCC>GCT	p.A370A	HSPA1L_uc010jte.2_Silent_p.A370A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	370					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATATGCTACGGCCTCATCAG	0.582													14	303					0	0	0.004007	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778670	31778670	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778670A>G	uc003nxh.2	-	2	1263	c.1080T>C	c.(1078-1080)GAT>GAC	p.D360D	HSPA1L_uc010jte.2_Silent_p.D360D	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	360					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTTGTTGAGATCACGTCCAT	0.532													17	274					0	0	0.002780	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778862	31778862	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778862A>G	uc003nxh.2	-	2	1071	c.888T>C	c.(886-888)TAT>TAC	p.Y296Y	HSPA1L_uc010jte.2_Silent_p.Y296Y	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	296					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGATGGATGTATAGAAGTCAA	0.532													32	292					0	0	0.002096	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778994	31778994	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31778994T>C	uc003nxh.2	-	2	939	c.756A>G	c.(754-756)AAA>AAG	p.K252K	HSPA1L_uc010jte.2_Silent_p.K252K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	252					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGATGTCCTTTTTGTGTTTCC	0.587													29	378					0	0	0.002445	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779028	31779028	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779028C>T	uc003nxh.2	-	2	905	c.722G>A	c.(721-723)AGC>AAC	p.S241N	HSPA1L_uc010jte.2_Missense_Mutation_p.S241N	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	241					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CACGAAGTGGCTCACAAGCCT	0.552													21	449					0	0	0.009535	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779033	31779033	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779033A>C	uc003nxh.2	-	2	900	c.717T>G	c.(715-717)CTT>CTG	p.L239L	HSPA1L_uc010jte.2_Silent_p.L239L	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	239					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGTGGCTCACAAGCCTGTTGT	0.542													24	453					0	0	0.002836	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779066	31779066	+	Silent	SNP	A	G	G	rs111381223		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779066A>G	uc003nxh.2	-	2	867	c.684T>C	c.(682-684)ACT>ACC	p.T228T	HSPA1L_uc010jte.2_Silent_p.T228T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	228					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CACCCAGGTGAGTGTCCCCAG	0.498													24	401					0	0	0.006999	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779075	31779075	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779075A>G	uc003nxh.2	-	2	858	c.675T>C	c.(673-675)GCT>GCC	p.A225A	HSPA1L_uc010jte.2_Silent_p.A225A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	225					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GAGTGTCCCCAGCAGTGGCCT	0.483													32	381					0	0	0.002852	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779078	31779078	+	Silent	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779078A>C	uc003nxh.2	-	2	855	c.672T>G	c.(670-672)ACT>ACG	p.T224T	HSPA1L_uc010jte.2_Silent_p.T224T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	224					response to unfolded protein		ATP binding	p.T224N(1)		ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTCCCCAGCAGTGGCCTTTA	0.488													33	374					0	0	0.002852	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779087	31779087	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779087T>C	uc003nxh.2	-	2	846	c.663A>G	c.(661-663)GTA>GTG	p.V221V	HSPA1L_uc010jte.2_Silent_p.V221V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	221					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CAGTGGCCTTTACCTCAAAAA	0.478													27	337					0	0	0.004878	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779120	31779120	+	Silent	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779120T>G	uc003nxh.2	-	2	813	c.630A>C	c.(628-630)TCA>TCC	p.S210S	HSPA1L_uc010jte.2_Silent_p.S210S	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	210					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGGTCAGAATTGACACATCAA	0.502													11	272					0	0	0.002450	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779231	31779231	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779231T>C	uc003nxh.2	-	2	702	c.519A>G	c.(517-519)AGA>AGG	p.R173R	HSPA1L_uc010jte.2_Silent_p.R173R	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	173					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTGATGATTCTTAGCACAT	0.473													10	208					0	0	0.000978	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779318	31779318	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779318T>C	uc003nxh.2	-	2	615	c.432A>G	c.(430-432)GCA>GCG	p.A144A	HSPA1L_uc010jte.2_Silent_p.A144A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	144					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CGGTAATCACTGCATTGGTGA	0.463													9	170					0	0	0.004482	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779327	31779327	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779327G>C	uc003nxh.2	-	2	606	c.423C>G	c.(421-423)GTC>GTG	p.V141V	HSPA1L_uc010jte.2_Silent_p.V141V	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	141					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CTGCATTGGTGACAGGGTGGC	0.463													13	163					0	0	0.001855	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779351	31779351	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779351A>G	uc003nxh.2	-	2	582	c.399T>C	c.(397-399)GCT>GCC	p.A133A	HSPA1L_uc010jte.2_Silent_p.A133A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	133					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AAAAGGCCTCAGCAGTCTCCT	0.483													9	164					0	0	0.000978	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779396	31779396	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779396A>G	uc003nxh.2	-	2	537	c.354T>C	c.(352-354)CCT>CCC	p.P118P	HSPA1L_uc010jte.2_Silent_p.P118P	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	118					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						AGATTTCCTCAGGGTAGAAAG	0.453													14	207					0	0	0.001855	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779412	31779412	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779412T>G	uc003nxh.2	-	2	521	c.338A>C	c.(337-339)AAT>ACT	p.N113T	HSPA1L_uc010jte.2_Missense_Mutation_p.N113T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	113					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GAAAGCTTTATTCTCCCCTTT	0.433													10	226					0	0	0.000978	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779465	31779465	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779465T>C	uc003nxh.2	-	2	468	c.285A>G	c.(283-285)CAA>CAG	p.Q95Q	HSPA1L_uc010jte.2_Silent_p.Q95Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	95					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CATTAATCACTTGAAAAGGCC	0.408													17	270					0	0	0.006122	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779591	31779591	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779591A>G	uc003nxh.2	-	2	342	c.159T>C	c.(157-159)ATT>ATC	p.I53I	HSPA1L_uc010jte.2_Silent_p.I53I	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	53					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCGCATCCCCAATGAGCCGCT	0.547													45	386					0	0	0.009718	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779609	31779609	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779609T>C	uc003nxh.2	-	2	324	c.141A>G	c.(139-141)ACA>ACG	p.T47T	HSPA1L_uc010jte.2_Silent_p.T47T	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	47					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						GCTCGGTGTCTGTGAAGGCCA	0.567													60	378					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779678	31779678	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779678C>T	uc003nxh.2	-	2	255	c.72G>A	c.(70-72)CAG>CAA	p.Q24Q	HSPA1L_uc010jte.2_Silent_p.Q24Q	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	24					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTTGCCGTGCTGGAACACCC	0.602													76	323					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779693	31779693	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31779693A>G	uc003nxh.2	-	2	240	c.57T>C	c.(55-57)TGT>TGC	p.C19C	HSPA1L_uc010jte.2_Silent_p.C19C	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	19					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						ACACCCCCACACAGGAGTAGG	0.582													80	316					0	0	0.003610	0	0
PBX2	5089	broad.mit.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:32155509T>A	uc003oav.1	-	5	1056	c.785A>T	c.(784-786)TAT>TTT	p.Y262F	PBX2_uc003oaw.2_Missense_Mutation_p.Y262F	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	262	Homeobox; TALE-type.						transcription factor binding			ovary(1)	1						GGAGTAGAAATACTCATTTAG	0.517													4	26					0	0	0.001168	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577													4	12					0	0	0.009096	0	0
C6orf227	401253	broad.mit.edu	37	6	33555557	33555557	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:33555557A>G	uc003oew.1	-	2	433	c.431T>C	c.(430-432)ATA>ACA	p.I144T	GGNBP1_uc003oev.2_Intron	NR_027908				RecName: Full=Putative uncharacterized protein C6orf227;												0						gctcacgcctataatcctagc	0.209													5	38					0	0	0.001368	0	0
TREML3	340206	broad.mit.edu	37	6	41185564	41185564	+	RNA	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:41185564T>C	uc003oqb.2	-	1		c.122A>G				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						AACTGCTGTCTGGGGCTTGGA	0.507													17	131					0	0	0.007413	0	0
TREML3	340206	broad.mit.edu	37	6	41185640	41185640	+	RNA	SNP	A	G	G	rs111911263		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:41185640A>G	uc003oqb.2	-	1		c.46T>C				NR_027256				Homo sapiens TREM-like transcript 3 (TLT3) mRNA, partial cds.												0						GGCTGATAGGACCCTCTCTTG	0.522													9	105					0	0	0.000978	0	0
TREML4	285852	broad.mit.edu	37	6	41196530	41196530	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:41196530C>T	uc003oqc.2	+	2	246	c.142C>T	c.(142-144)CCC>TCC	p.P48S	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	48	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAAGAGAGGGCCCTATCAGCC	0.537													26	220					0	0	0.002445	0	0
TREML4	285852	broad.mit.edu	37	6	41196606	41196606	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:41196606G>A	uc003oqc.2	+	2	322	c.218G>A	c.(217-219)TGG>TAG	p.W73*	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	73	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					TCCAAGCCCTGGACAGCAGTT	0.512													14	186					0	0	0.002450	0	0
TREML4	285852	broad.mit.edu	37	6	41196649	41196649	+	Silent	SNP	C	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:41196649C>A	uc003oqc.2	+	2	365	c.261C>A	c.(259-261)CCC>CCA	p.P87P	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	87	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					GGGACAAGCCCAATGCTGGCT	0.488													11	262					2.3814e-25	2.51874e-25	0.003330	1	0
POLR1C	9533	broad.mit.edu	37	6	43497019	43497019	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:43497019A>G	uc003ovo.1	+	9	1012	c.955A>G	c.(955-957)ACC>GCC	p.T319A	XPO5_uc003ovp.2_Intron	NM_004875	NP_004866	O15160	RPAC1_HUMAN	RNA polymerase I subunit isoform 2	Error:Variant_position_missing_in_O15160_after_alignment					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|all cancers(41;0.00511)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			ggtggctcacacctgtaatcc	0.129													6	44					0	0	0.003163	0	0
POLR1C	9533	broad.mit.edu	37	6	43497047	43497047	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:43497047A>G	uc003ovo.1	+	9	1040	c.983A>G	c.(982-984)CAA>CGA	p.Q328R	XPO5_uc003ovp.2_Intron	NM_004875	NP_004866	O15160	RPAC1_HUMAN	RNA polymerase I subunit isoform 2	Error:Variant_position_missing_in_O15160_after_alignment					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|all cancers(41;0.00511)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			ttgggaggccaaggcgagtgg	0.085													6	26					0	0	0.008291	0	0
SENP6	26054	broad.mit.edu	37	6	76386908	76386908	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:76386908G>C	uc003pid.3	+	14	2403	c.1784G>C	c.(1783-1785)TGT>TCT	p.C595S	SENP6_uc003pie.3_Missense_Mutation_p.C588S|SENP6_uc010kbf.2_RNA|SENP6_uc003pic.2_Missense_Mutation_p.C588S|SENP6_uc003pif.1_Missense_Mutation_p.C486S	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	595					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				CTTGTTGCCTGTACAAGAACC	0.274													3	10					0	0	0.004672	0	0
PRDM1	639	broad.mit.edu	37	6	106547292	106547292	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:106547292C>G	uc003prd.2	+	4	763	c.529C>G	c.(529-531)CAG>GAG	p.Q177E	PRDM1_uc003pre.2_Missense_Mutation_p.Q43E	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	177	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		GGCTGCGTGTCAGAACGGGAT	0.493			D|N|Mis|F|S		DLBCL								6	35					0	0	0.001168	0	0
RPS12	6206	broad.mit.edu	37	6	133138134	133138134	+	Silent	SNP	C	G	G	rs146638149		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:133138134C>G	uc003qdx.2	+	5	352	c.270C>G	c.(268-270)GGC>GGG	p.G90G	RPS12_uc003qdy.1_3'UTR	NM_001016	NP_001007	P25398	RS12_HUMAN	ribosomal protein S12	90					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	structural constituent of ribosome				0	Breast(56;0.214)			OV - Ovarian serous cystadenocarcinoma(155;0.00284)|GBM - Glioblastoma multiforme(226;0.0256)		AATGGGTAGGCCTTTGTAAAA	0.358													4	33					0	0	0.009096	0	0
RAET1K	646024	broad.mit.edu	37	6	150322647	150322647	+	RNA	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:150322647T>G	uc003qnq.2	-	2		c.230A>C				NR_024045				Homo sapiens RAET1K mRNA, partial sequence.												0						TTGTGACATTTACTTTCTTCC	0.433													6	91					0	0	0.001984	0	0
RAET1L	154064	broad.mit.edu	37	6	150343212	150343212	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:150343212T>G	uc011eei.1	-	2	314	c.253A>C	c.(253-255)ATG>CTG	p.M85L		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	85	MHC class I alpha-1 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TTCCAGGCCATTGTGACATTT	0.483													24	259					0	0	0.003954	0	0
RAET1L	154064	broad.mit.edu	37	6	150343233	150343233	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:150343233C>G	uc011eei.1	-	2	293	c.232G>C	c.(232-234)GGG>CGG	p.G78R		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	78	MHC class I alpha-1 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		AGTTTCTTCCCCAGGGGACTG	0.507													22	305					0	0	0.002299	0	0
RAET1L	154064	broad.mit.edu	37	6	150343239	150343239	+	Missense_Mutation	SNP	G	A	A	rs139983884	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:150343239G>A	uc011eei.1	-	2	287	c.226C>T	c.(226-228)CCC>TCC	p.P76S		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	76	MHC class I alpha-1 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TTCCCCAGGGGACTGACGGGT	0.502													16	325					0	0	0.004990	0	0
RAET1L	154064	broad.mit.edu	37	6	150343274	150343274	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:150343274T>G	uc011eei.1	-	2	252	c.191A>C	c.(190-192)TAT>TCT	p.Y64S		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	64	MHC class I alpha-1 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		GCCACAGTCATAGTGAAGAAA	0.507													10	238					0	0	0.004007	0	0
MLLT4	4301	broad.mit.edu	37	6	168227167	168227167	+	5'Flank	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:168227167A>C	uc003qwd.2	+						MLLT4_uc003qwb.1_5'Flank|MLLT4_uc003qwc.1_5'Flank|C6orf124_uc003qwa.2_RNA	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CGAACCGAACATAGCACCGCC	0.706			T	MLL	AL								13	403					0	0	0.003610	0	0
FAM120B	84498	broad.mit.edu	37	6	170627883	170627883	+	Missense_Mutation	SNP	T	C	C	rs143059540	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:170627883T>C	uc003qxp.2	+	2	1513	c.1405T>C	c.(1405-1407)TCC>CCC	p.S469P	FAM120B_uc003qxo.1_Missense_Mutation_p.S469P|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	469					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		AGGCCCTGAATCCAGGCAAGA	0.468													7	158					0	0	0.003163	0	0
C7orf26	79034	broad.mit.edu	37	7	6647680	6647680	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:6647680C>T	uc003sqo.1	+	6	1238	c.1238C>T	c.(1237-1239)CCG>CTG	p.P413L	C7orf26_uc003sqp.1_Missense_Mutation_p.P316L|C7orf26_uc003sqq.1_Missense_Mutation_p.P214L	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	413										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		CACACGCCCCCGCTGGGCTAC	0.721													5	26					0	0	0.001168	0	0
PMS2CL	441194	broad.mit.edu	37	7	6777118	6777118	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:6777118G>A	uc011jxb.1	+	5	1172	c.398G>A	c.(397-399)TGT>TAT	p.C133Y	PMS2CL_uc003squ.2_RNA|PMS2CL_uc003sqv.1_RNA					SubName: Full=cDNA FLJ60281, highly similar to PMS1 protein homolog 2;												0						AGCAGCGAGTGTGTGGCCAGC	0.597													6	69					0	0	0.004007	0	0
PMS2CL	441194	broad.mit.edu	37	7	6777121	6777121	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:6777121T>C	uc011jxb.1	+	5	1175	c.401T>C	c.(400-402)GTG>GCG	p.V134A	PMS2CL_uc003squ.2_RNA|PMS2CL_uc003sqv.1_RNA					SubName: Full=cDNA FLJ60281, highly similar to PMS1 protein homolog 2;												0						AGCGAGTGTGTGGCCAGCACC	0.592													6	74					0	0	0.004990	0	0
TMEM195	392636	broad.mit.edu	37	7	15601446	15601446	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:15601446C>G	uc003stb.1	-	1	195	c.25G>C	c.(25-27)GAT>CAT	p.D9H		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	9					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						ACTGAAACATCCTGCTGGGCT	0.428													6	28					0	0	0.001168	0	0
C7orf16	10842	broad.mit.edu	37	7	31735209	31735209	+	Missense_Mutation	SNP	C	T	T	rs141112620	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:31735209C>T	uc003tcl.2	+	3	367	c.209C>T	c.(208-210)GCG>GTG	p.A70V	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	70					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			GATACACCGGCGCTGCACATC	0.453													11	82					0	0	0.000978	0	0
AEBP1	165	broad.mit.edu	37	7	44146299	44146299	+	Silent	SNP	T	C	C	rs147308599	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:44146299T>C	uc003tkb.2	+	2	713	c.408T>C	c.(406-408)CCT>CCC	p.P136P		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	136	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGAAGCCACCTAAGGCCACCA	0.627													4	68					0	0	0.000602	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72338263	72338263	+	RNA	SNP	C	T	T	rs143911426	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:72338263C>T	uc010lal.1	-	1		c.1393G>A				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CACCCTCAGACCTTTGTCCCA	0.527													8	284					0	0	0.003080	0	0
PMS2L11	441263	broad.mit.edu	37	7	76652946	76652946	+	RNA	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:76652946T>A	uc003ufw.3	+	11		c.1631T>A			PMS2L11_uc011kgn.1_Intron	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						CCCTGCTCCTTGGAGGACAAC	0.517													6	46					0	0	0.001984	0	0
ZNF394	84124	broad.mit.edu	37	7	99091155	99091155	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:99091155T>C	uc003uqs.2	-	3	1844	c.1683A>G	c.(1681-1683)CTA>CTG	p.L561L	ZNF394_uc003uqt.2_Silent_p.L354L	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	561					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					gctgggattataggcgtgagc	0.139													13	99					0	0	0.007291	0	0
ZNF394	84124	broad.mit.edu	37	7	99091159	99091159	+	Missense_Mutation	SNP	C	T	T	rs61737535	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:99091159C>T	uc003uqs.2	-	3	1840	c.1679G>A	c.(1678-1680)CGC>CAC	p.R560H	ZNF394_uc003uqt.2_Missense_Mutation_p.R353H	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	560					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					ggattataggcgtgagccacc	0.149													9	116					0	0	0.002450	0	0
AZGP1	563	broad.mit.edu	37	7	99573628	99573628	+	Missense_Mutation	SNP	G	A	A	rs151090185		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:99573628G>A	uc003ush.2	-	1	60	c.16C>T	c.(16-18)CCT>TCT	p.P6S		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	6					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					AGCAGGACAGGCACCATTCTT	0.587													34	849					0	0	0.009718	0	0
ZAN	7455	broad.mit.edu	37	7	100350361	100350361	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100350361T>C	uc003uwj.2	+	14	2798	c.2633T>C	c.(2632-2634)CTC>CCC	p.L878P	ZAN_uc003uwk.2_Missense_Mutation_p.L878P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	878	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACGGAAAAACTCACCATCCCC	0.502													32	291					0	0	0.002522	0	0
ZAN	7455	broad.mit.edu	37	7	100350487	100350487	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100350487C>T	uc003uwj.2	+	14	2924	c.2759C>T	c.(2758-2760)CCC>CTC	p.P920L	ZAN_uc003uwk.2_Missense_Mutation_p.P920L|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	920	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACGGAAAAACCCACCATCCCC	0.502													9	338					0	0	0.010504	0	0
ZAN	7455	broad.mit.edu	37	7	100350592	100350592	+	Missense_Mutation	SNP	T	C	C	rs112032841		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100350592T>C	uc003uwj.2	+	14	3029	c.2864T>C	c.(2863-2865)CTC>CCC	p.L955P	ZAN_uc003uwk.2_Missense_Mutation_p.L955P|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	955	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACTCACCATCCCC	0.512													14	306					0	0	0.003330	0	0
ZAN	7455	broad.mit.edu	37	7	100350605	100350605	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100350605A>G	uc003uwj.2	+	14	3042	c.2877A>G	c.(2875-2877)ACA>ACG	p.T959T	ZAN_uc003uwk.2_Silent_p.T959T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	959	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCATCCCCACAGAAAAACCCA	0.507													9	311					0	0	0.001368	0	0
MUC17	140453	broad.mit.edu	37	7	100682348	100682348	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100682348G>A	uc003uxp.1	+	3	7704	c.7651G>A	c.(7651-7653)GAA>AAA	p.E2551K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2551	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|41.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACTTCTACTGAAATCAGTTC	0.488													39	178					0	0	0.005524	0	0
FEZF1	389549	broad.mit.edu	37	7	121942300	121942300	+	Silent	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:121942300G>T	uc003vkd.2	-	4	1253	c.1179C>A	c.(1177-1179)ACC>ACA	p.T393T	FEZF1_uc003vkc.2_Silent_p.T343T|uc010lko.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	393	C2H2-type 5.				cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						TGTCGTTGTGGGTGTGCATGT	0.532													7	139					6.5536e-12	6.84471e-12	0.003080	1	0
OR2A14	135941	broad.mit.edu	37	7	143826553	143826554	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826553_143826554GA>TT	uc011kua.1	+	1	348_349	c.348_349GA>TT	c.(346-351)GTGATG>GTTTTG	p.M117L		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TTTTGGTGGTGATGTCCTATGA	0.47													23	316					0	0	0.004672	0	0
OR2A14	135941	broad.mit.edu	37	7	143826573	143826573	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826573C>T	uc011kua.1	+	1	368	c.368C>T	c.(367-369)GCG>GTG	p.A123V		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GATCGCTATGCGGACATCTGC	0.493													36	295					0	0	0.002836	0	0
OR2A14	135941	broad.mit.edu	37	7	143826602	143826602	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826602A>G	uc011kua.1	+	1	397	c.397A>G	c.(397-399)AGC>GGC	p.S133G		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ACGTTACAATAGCCTCATGAG	0.517													34	334					0	0	0.002096	0	0
OR2A14	135941	broad.mit.edu	37	7	143826621	143826621	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826621T>A	uc011kua.1	+	1	416	c.416T>A	c.(415-417)GTG>GAG	p.V139E		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	139	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGCTGGAGAGTGTGCACTGTC	0.537													16	409					0	0	0.003163	0	0
OR2A14	135941	broad.mit.edu	37	7	143826860	143826860	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826860C>G	uc011kua.1	+	1	655	c.655C>G	c.(655-657)CGC>GGC	p.R219G		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTCCTACTTGCGCATCCTGGC	0.612													20	365					0	0	0.007413	0	0
OR2A14	135941	broad.mit.edu	37	7	143826878	143826878	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826878T>C	uc011kua.1	+	1	673	c.673T>C	c.(673-675)TTG>CTG	p.L225L		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GGCCGCCATCTTGAGGATCCA	0.607													14	358					0	0	0.002450	0	0
OR2A14	135941	broad.mit.edu	37	7	143826895	143826895	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826895G>C	uc011kua.1	+	1	690	c.690G>C	c.(688-690)GGG>GGC	p.G230G		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TCCAGTCTGGGGAGGGCCGCA	0.612													14	338					0	0	0.003163	0	0
OR2A14	135941	broad.mit.edu	37	7	143826919	143826919	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826919C>T	uc011kua.1	+	1	714	c.714C>T	c.(712-714)TCC>TCT	p.S238S		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGGCCTTCTCCACCTGCTCCT	0.622													17	315					0	0	0.006122	0	0
OR2A14	135941	broad.mit.edu	37	7	143826949	143826950	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826949_143826950AC>GT	uc011kua.1	+	1	744_745	c.744_745AC>GT	c.(742-747)GGACTC>GGGTTC	p.L249F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GCGTGGTGGGACTCTTCTTTGG	0.574													20	287					0	0	0.004672	0	0
OR2A14	135941	broad.mit.edu	37	7	143826963	143826963	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826963G>A	uc011kua.1	+	1	758	c.758G>A	c.(757-759)AGC>AAC	p.S253N		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TTCTTTGGCAGCGCCATTGTC	0.572													20	294					0	0	0.010504	0	0
OR2A14	135941	broad.mit.edu	37	7	143827003	143827003	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143827003T>C	uc011kua.1	+	1	798	c.798T>C	c.(796-798)CCT>CCC	p.P266P		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CCCGCCATCCTGAGGAGCAGC	0.547													22	339					0	0	0.010504	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439434	150439434	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439434A>G	uc003whr.1	+	3	559	c.207A>G	c.(205-207)AAA>AAG	p.K69K	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	69	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCAGGTGAAAACAGGAACAT	0.572													8	136					0	0	0.003080	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439449	150439449	+	Silent	SNP	C	T	T	rs142964864		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439449C>T	uc003whr.1	+	3	574	c.222C>T	c.(220-222)AAC>AAT	p.N74N	GIMAP5_uc010lpu.2_Translation_Start_Site	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	74	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAACATGGAACGGGAGGAAAG	0.572													8	138					0	0	0.003080	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439688	150439688	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439688A>G	uc003whr.1	+	3	813	c.461A>G	c.(460-462)GAG>GGG	p.E154G	GIMAP5_uc010lpu.2_Missense_Mutation_p.E12G	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	154	Cytoplasmic (Potential).|GTP (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCCACAAAGAGGACTTAGGG	0.557													12	362					0	0	0.000978	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439699	150439699	+	Missense_Mutation	SNP	G	A	A	rs138178760		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439699G>A	uc003whr.1	+	3	824	c.472G>A	c.(472-474)GGC>AGC	p.G158S	GIMAP5_uc010lpu.2_Missense_Mutation_p.G16S	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	158	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGACTTAGGGGGCCAGGCCCT	0.552													13	382					0	0	0.001855	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439882	150439882	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439882C>T	uc003whr.1	+	3	1007	c.655C>T	c.(655-657)CAC>TAC	p.H219Y	GIMAP5_uc010lpu.2_Missense_Mutation_p.H77Y	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	219	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGGCTCCTTCCACAGCAATGA	0.597													10	169					0	0	0.006214	0	0
GBX1	2636	broad.mit.edu	37	7	150864162	150864162	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150864162C>T	uc011kvg.1	-	1	706	c.474G>A	c.(472-474)GAG>GAA	p.E158E		NM_001098834	NP_001092304	Q14549	GBX1_HUMAN	gastrulation brain homeo box 1	158	Pro-rich.					nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGCCACTTTCTCCCGGGCCG	0.592													4	44					0	0	0.000602	0	0
MFHAS1	9258	broad.mit.edu	37	8	8749116	8749116	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:8749116C>T	uc003wsj.1	-	1	2016	c.1453G>A	c.(1453-1455)GAG>AAG	p.E485K		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	485	Roc.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		TGGATCACCTCATAACTTTCA	0.607													6	34					0	0	0.003080	0	0
RP1L1	94137	broad.mit.edu	37	8	10467587	10467587	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:10467587T>C	uc003wtc.2	-	4	4250	c.4021A>G	c.(4021-4023)ACT>GCT	p.T1341A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1341					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		gtttctttagtttcctctaac	0.075													4	38					0	0	0.009535	0	0
NEFM	4741	broad.mit.edu	37	8	24775225	24775225	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:24775225A>G	uc003xed.3	+	3	1890	c.1857A>G	c.(1855-1857)AAA>AAG	p.K619K	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.K243K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	619	6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|1.|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTGTGCCAAAATCACCAGTGG	0.458													6	145					0	0	0.001368	0	0
NEFM	4741	broad.mit.edu	37	8	24775339	24775339	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:24775339G>C	uc003xed.3	+	3	2004	c.1971G>C	c.(1969-1971)CCG>CCC	p.P657P	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.P281P	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	657	4.|6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTCCTGTGCCGAAATCACCAG	0.478													8	172					0	0	0.001855	0	0
NEFM	4741	broad.mit.edu	37	8	24775342	24775342	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:24775342A>G	uc003xed.3	+	3	2007	c.1974A>G	c.(1972-1974)AAA>AAG	p.K658K	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.K282K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	658	4.|6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTGTGCCGAAATCACCAGTGG	0.473													8	172					0	0	0.001855	0	0
C8orf44	56260	broad.mit.edu	37	8	67590053	67590053	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:67590053G>A	uc003xwo.1	+	2	263	c.110G>A	c.(109-111)CGG>CAG	p.R37Q	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Missense_Mutation_p.R37Q	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	37											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TGGAAAggccgggcacggtgg	0.254													7	133					0	0	0.006214	0	0
C8orf44	56260	broad.mit.edu	37	8	67590057	67590057	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:67590057A>G	uc003xwo.1	+	2	267	c.114A>G	c.(112-114)GCA>GCG	p.A38A	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Silent_p.A38A	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	38											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			AAggccgggcacggtggctca	0.249													7	121					0	0	0.001368	0	0
C8orf44	56260	broad.mit.edu	37	8	67590068	67590068	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:67590068T>C	uc003xwo.1	+	2	278	c.125T>C	c.(124-126)ATG>ACG	p.M42T	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Missense_Mutation_p.M42T	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	42											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			cggtggctcatgcctgtaatc	0.229													7	102					0	0	0.004990	0	0
C8orf44	56260	broad.mit.edu	37	8	67590131	67590131	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:67590131A>G	uc003xwo.1	+	2	341	c.188A>G	c.(187-189)AAA>AGA	p.K63R	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Missense_Mutation_p.K63R	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	63											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			aggagttcgaaaccagcctgg	0.035													4	25					0	0	0.001168	0	0
C8orf44	56260	broad.mit.edu	37	8	67590164	67590164	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:67590164T>C	uc003xwo.1	+	2	374	c.221T>C	c.(220-222)TTT>TCT	p.F74S	SGK3_uc003xwp.2_Intron|C8orf44_uc003xwq.1_Missense_Mutation_p.F74S	NM_019607	NP_062553	Q96CB5	CH044_HUMAN	hypothetical protein LOC56260	74											0	Breast(64;0.186)		Epithelial(68;0.000959)|OV - Ovarian serous cystadenocarcinoma(28;0.00318)|all cancers(69;0.00363)|BRCA - Breast invasive adenocarcinoma(89;0.149)			aaccccatctttactaaaaat	0													5	11					0	0	0.003080	0	0
MIR1208	100302281	broad.mit.edu	37	8	129162365	129162365	+	RNA	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:129162365C>T	hsa-mir-1208|MI0006341	+			c.4C>T																				0						AATGAATCACCGGCAGAATCA	0.512													23	57					0	0	0.004656	0	0
CLTA	1211	broad.mit.edu	37	9	36304140	36304140	+	RNA	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:36304140C>T	uc003zzf.1	+	8		c.1288C>T				NM_001833		P09496	CLCA_HUMAN	clathrin, light polypeptide A isoform a						axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol	structural molecule activity			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			ccaaggcaggcggatcacctg	0.03													4	11					0	0	0.001168	0	0
FAM22F	54754	broad.mit.edu	37	9	97082793	97082793	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:97082793C>G	uc004aup.1	-	5	1086	c.1065G>C	c.(1063-1065)AAG>AAC	p.K355N		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	355	Pro-rich.										0		Acute lymphoblastic leukemia(62;0.136)				GCAGGTGGGCCTTGGTCTCCG	0.706													8	107					0	0	0.000978	0	0
ST6GALNAC4	27090	broad.mit.edu	37	9	130674558	130674558	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:130674558C>T	uc004bss.2	-	4	876	c.600G>A	c.(598-600)ACG>ACA	p.T200T	ST6GALNAC4_uc004bst.2_Silent_p.T116T	NM_175039	NP_778204	Q9H4F1	SIA7D_HUMAN	sialyltransferase 7D isoform a	200	Lumenal (Potential).				glycolipid metabolic process|protein glycosylation	integral to Golgi membrane|nucleus|soluble fraction	(alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity				0						GGTTCTTGCCCGTCTCGTCCT	0.637													11	66					0	0	0.008291	0	0
TTF1	7270	broad.mit.edu	37	9	135251335	135251335	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:135251335A>G	uc004cbl.2	-	11	2737	c.2685T>C	c.(2683-2685)AGT>AGC	p.S895S	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Silent_p.S380S	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	895					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		ctcccaaagtactggaattac	0.109													8	25					0	0	0.001368	0	0
SNAPC4	6621	broad.mit.edu	37	9	139276405	139276405	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:139276405G>A	uc004chh.2	-	17	2197	c.2188C>T	c.(2188-2190)CGC>TGC	p.R730C		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	730					snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		TGTCTCCAGCGCCGCTGCCCA	0.672													5	32					0	0	0.001168	0	0
SMS	6611	broad.mit.edu	37	X	21997049	21997049	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:21997049G>T	uc004dag.2	+	7	816	c.715G>T	c.(715-717)GAT>TAT	p.D239Y	SMS_uc010nfs.2_RNA|SMS_uc010nft.2_Missense_Mutation_p.D16Y	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	239					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	AACGTGTGGCGATGTCTTAGA	0.343													5	43					2.0095e-06	2.0635e-06	0.001984	1	0
ZNF673	55634	broad.mit.edu	37	X	46332193	46332193	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:46332193C>G	uc004dgn.3	+	6	561	c.262C>G	c.(262-264)CAA>GAA	p.Q88E	ZNF673_uc004dgp.3_3'UTR|ZNF673_uc010nhl.2_3'UTR|ZNF673_uc004dgm.3_Missense_Mutation_p.Q83E	NM_001129898	NP_001123370	Q5JUW0	ZN673_HUMAN	zinc finger family member 673 isoform 1	88					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0						AGAAGTCTGGCAAGTTGATGA	0.393													7	85					0	0	0.001984	0	0
ZNF673	55634	broad.mit.edu	37	X	46332201	46332201	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:46332201T>C	uc004dgn.3	+	6	569	c.270T>C	c.(268-270)GAT>GAC	p.D90D	ZNF673_uc004dgp.3_3'UTR|ZNF673_uc010nhl.2_3'UTR|ZNF673_uc004dgm.3_Silent_p.D85D	NM_001129898	NP_001123370	Q5JUW0	ZN673_HUMAN	zinc finger family member 673 isoform 1	90					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding				0						GGCAAGTTGATGAGCAGATAG	0.388													6	91					0	0	0.001168	0	0
SSX5	6758	broad.mit.edu	37	X	48049601	48049602	+	Missense_Mutation	DNP	AG	GC	GC			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48049601_48049602AG>GC	uc004dja.1	-	6	486_487	c.433_434CT>GC	c.(433-435)CTA>GCA	p.L145A	SSX5_uc004diz.1_Missense_Mutation_p.L186A	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	145					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						AGAGGTATTTAGTTTTCCTGAG	0.495													13	181					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	X	48073983	48073983	+	IGR	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48073983A>G								SSX5 (17784 upstream) : SSX1 (40814 downstream)																							GATTCAAAGGAAGTGCTAGAA	0.428													15	343					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	X	48074046	48074046	+	IGR	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48074046G>A								SSX5 (17847 upstream) : SSX1 (40751 downstream)																							GGAAAAGCAAGTAGCTCTGAG	0.522													9	270					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	X	48074049	48074049	+	IGR	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48074049G>C								SSX5 (17850 upstream) : SSX1 (40748 downstream)																							AAAGCAAGTAGCTCTGAGAAG	0.522													9	258					0	0	0.006214	0	0
SSX1	6756	broad.mit.edu	37	X	48125807	48125807	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48125807G>A	uc004djb.1	+	7	643	c.552G>A	c.(550-552)GAG>GAA	p.E184E		NM_005635	NP_005626	Q16384	SSX1_HUMAN	synovial sarcoma, X breakpoint 1	184					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|transcription corepressor activity		SS18/SSX1(1169)	soft_tissue(1169)	1169						GTGACCCTGAGGAAGATGACG	0.488													8	239					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	X	48159139	48159139	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48159139A>G	uc010nib.1	-	6	481	c.394T>C	c.(394-396)TTA>CTA	p.L132L		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TCGTTCTGTAAGCCAGATGCT	0.463													11	456					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	X	48159159	48159159	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48159159T>C	uc010nib.1	-	6	461	c.374A>G	c.(373-375)GAA>GGA	p.E125G		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TTCTGGCACTTCCTTCGAATC	0.433													17	475					0	0	0.004007	0	0
SSX3	10214	broad.mit.edu	37	X	48207000	48207000	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48207000C>T	uc004djd.1	-	7	600	c.506G>A	c.(505-507)CGT>CAT	p.R169H		NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						CTTTCTCTCACGCAGTCTGTG	0.502													20	819					0	0	0.001882	0	0
SSX3	10214	broad.mit.edu	37	X	48209493	48209493	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48209493G>A	uc004djd.1	-	6	489	c.395C>T	c.(394-396)CCA>CTA	p.P132L	SSX3_uc004dje.2_Missense_Mutation_p.P132L	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						ATCGTTTTGTGGGCCAGATGC	0.448													15	547					0	0	0.006122	0	0
SSX3	10214	broad.mit.edu	37	X	48209496	48209496	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48209496C>G	uc004djd.1	-	6	486	c.392G>C	c.(391-393)GGC>GCC	p.G131A	SSX3_uc004dje.2_Missense_Mutation_p.G131A	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GTTTTGTGGGCCAGATGCTTC	0.438													18	536					0	0	0.010504	0	0
SSX3	10214	broad.mit.edu	37	X	48209503	48209503	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48209503C>G	uc004djd.1	-	6	479	c.385G>C	c.(385-387)GCA>CCA	p.A129P	SSX3_uc004dje.2_Missense_Mutation_p.A129P	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	129					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GGGCCAGATGCTTCTGGCACT	0.428													15	560					0	0	0.003163	0	0
SSX3	10214	broad.mit.edu	37	X	48209528	48209528	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:48209528T>C	uc004djd.1	-	6	454	c.360A>G	c.(358-360)GGA>GGG	p.G120G	SSX3_uc004dje.2_Silent_p.G120G	NM_021014	NP_066294	Q99909	SSX3_HUMAN	synovial sarcoma, X breakpoint 3 isoform a	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						TCGAAACATTTCCTTCCTCTG	0.378													16	574					0	0	0.003163	0	0
SSX8	280659	broad.mit.edu	37	X	52659369	52659369	+	RNA	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52659369T>C	uc011moa.1	+	7		c.866T>C			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAGGGAGTGTCAGAAGCATC	0.428													44	799					0	0	0.003610	0	0
SSX8	280659	broad.mit.edu	37	X	52659384	52659384	+	RNA	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52659384C>T	uc011moa.1	+	7		c.881C>T			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						AGCATCTGGCCCACAGAACGA	0.448													41	824					0	0	0.003610	0	0
SSX8	280659	broad.mit.edu	37	X	52659452	52659452	+	RNA	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52659452G>C	uc011moa.1	+	7		c.949G>C			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						ATTAATAAGAGATCTGGTAAG	0.493													26	326					0	0	0.002096	0	0
SSX8	280659	broad.mit.edu	37	X	52662448	52662448	+	RNA	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52662448A>G	uc011mob.1	+	8		c.897A>G				NR_027250				Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAGCAGAACATGGTGACCTT	0.502													10	310					0	0	0.000978	0	0
SSX7	280658	broad.mit.edu	37	X	52677363	52677363	+	Missense_Mutation	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52677363G>C	uc004dqx.1	-	6	573	c.414C>G	c.(412-414)CAC>CAG	p.H138Q		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					GAGGGCACAGGTGTTTCCCAT	0.483													84	827					0	0	0.003610	0	0
SSX7	280658	broad.mit.edu	37	X	52677383	52677383	+	Missense_Mutation	SNP	A	G	G	rs149511984		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52677383A>G	uc004dqx.1	-	6	553	c.394T>C	c.(394-396)TCA>CCA	p.S132P		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					TCGTTCTGTGAGCCAGATGCT	0.458													64	817					0	0	0.003610	0	0
SSX7	280658	broad.mit.edu	37	X	52677398	52677398	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52677398G>A	uc004dqx.1	-	6	538	c.379C>T	c.(379-381)CCA>TCA	p.P127S		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	127					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					GATGCTTCTGGCACTCCCTTC	0.428													46	817					0	0	0.003610	0	0
XAGE5	170627	broad.mit.edu	37	X	52844200	52844200	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52844200A>C	uc004drd.1	+	4	328	c.263A>C	c.(262-264)AAG>ACG	p.K88T		NM_130775	NP_570131	Q8WWM1	GAGD5_HUMAN	X antigen family, member 5	88										ovary(1)	1						GTCCAGGGGAAGATTCTGCCA	0.398													10	279					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	X	73095334	73095334	+	IGR	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:73095334A>G								XIST (22746 upstream) : NCRNA00183 (68825 downstream)																							caccgtgcccagccGAGCTGC	0.234													6	59					0	0	0.001984	0	0
TNMD	64102	broad.mit.edu	37	X	99854095	99854095	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:99854095A>G	uc004efy.3	+	6	886	c.660A>G	c.(658-660)GAA>GAG	p.E220E	TNMD_uc004efz.2_3'UTR	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	220	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						AACAAAATGAACAGTGGGTGG	0.403													3	9					0	0	0.004672	0	0
ARMCX6	54470	broad.mit.edu	37	X	100871236	100871236	+	Silent	SNP	C	T	T	rs61743831	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:100871236C>T	uc004ehx.2	-	3	720	c.375G>A	c.(373-375)CTG>CTA	p.L125L	ARMCX6_uc004ehy.2_Silent_p.L125L	NM_019007	NP_061880	Q7L4S7	ARMX6_HUMAN	armadillo repeat containing, X-linked 6	125						integral to membrane					0						TGGAGAGGTCCAGAACACAAC	0.458													23	270					0	0	0.006320	0	0
TCEAL2	140597	broad.mit.edu	37	X	101381813	101381813	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:101381813T>C	uc004eip.2	+	3	230	c.11T>C	c.(10-12)CTC>CCC	p.L4P		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ATGGAAAAACTCTTCAATGAA	0.483													7	118					0	0	0.003080	0	0
TCEAL2	140597	broad.mit.edu	37	X	101381816	101381816	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:101381816T>A	uc004eip.2	+	3	233	c.14T>A	c.(13-15)TTC>TAC	p.F5Y		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GAAAAACTCTTCAATGAAAAT	0.478													9	116					0	0	0.006214	0	0
TCEAL2	140597	broad.mit.edu	37	X	101381821	101381821	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:101381821G>A	uc004eip.2	+	3	238	c.19G>A	c.(19-21)GAA>AAA	p.E7K		NM_080390	NP_525129	Q9H3H9	TCAL2_HUMAN	transcription elongation factor A (SII)-like 2	7					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ACTCTTCAATGAAAATGAAGG	0.468													6	116					0	0	0.001984	0	0
NXF3	56000	broad.mit.edu	37	X	102339739	102339739	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:102339739G>A	uc004eju.2	-	2	172	c.101C>T	c.(100-102)TCT>TTT	p.S34F	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Missense_Mutation_p.S34F|NXF3_uc011mrx.1_Intron	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	34						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GACAGGTTCAGACCTACTGCT	0.428													6	109					0	0	0.001984	0	0
TMEM31	203562	broad.mit.edu	37	X	102968620	102968620	+	Silent	SNP	G	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:102968620G>C	uc004elh.2	+	3	392	c.201G>C	c.(199-201)ACG>ACC	p.T67T	GLRA4_uc011mse.1_Intron	NM_182541	NP_872347	Q5JXX7	TMM31_HUMAN	transmembrane protein 31	67						integral to membrane					0						GCGACAGAACGATCAACCTTC	0.483													11	91					0	0	0.008291	0	0
PAK3	5063	broad.mit.edu	37	X	110406199	110406199	+	Missense_Mutation	SNP	T	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:110406199T>A	uc004epa.2	+	6	597	c.570T>A	c.(568-570)GAT>GAA	p.D190E	PAK3_uc010npt.1_Missense_Mutation_p.D175E|PAK3_uc010npu.1_Missense_Mutation_p.D175E|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.D175E|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.D211E|PAK3_uc010npw.1_Missense_Mutation_p.D196E	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	190	Linker.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						aagaagaagatgaagaggaag	0.338										TSP Lung(19;0.15)			9	70					0	0	0.008291	0	0
SEPT6	23157	broad.mit.edu	37	X	118763359	118763359	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:118763359G>A	uc004erv.2	-	9	1467	c.1202C>T	c.(1201-1203)ACG>ATG	p.T401M	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Missense_Mutation_p.T401M|SEPT6_uc004ert.2_Missense_Mutation_p.T401M|SEPT6_uc004eru.2_Missense_Mutation_p.T401M|SEPT6_uc004erw.2_Missense_Mutation_p.T343M|SEPT6_uc011mtv.1_Missense_Mutation_p.T343M|SEPT6_uc011mtw.1_Missense_Mutation_p.T431M	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	401	Potential.				cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						CTCAGCCGCCGTCTTTCTTTG	0.502													22	169					0	0	0.002780	0	0
FAM127C	441518	broad.mit.edu	37	X	134156271	134156271	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134156271C>T	uc004eyc.1	-	1	296	c.219G>A	c.(217-219)ACG>ACA	p.T73T		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	73											0	Acute lymphoblastic leukemia(192;0.000127)					GGGCGGGCCCCGTGAGGCGGG	0.597													14	268					0	0	0.003163	0	0
FAM127C	441518	broad.mit.edu	37	X	134156348	134156348	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134156348T>C	uc004eyc.1	-	1	219	c.142A>G	c.(142-144)AGC>GGC	p.S48G		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	48											0	Acute lymphoblastic leukemia(192;0.000127)					ATGTAGGAGCTCGTCTGCACG	0.647													20	362					0	0	0.007413	0	0
FAM127C	441518	broad.mit.edu	37	X	134156388	134156388	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134156388A>G	uc004eyc.1	-	1	179	c.102T>C	c.(100-102)GAT>GAC	p.D34D		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	34											0	Acute lymphoblastic leukemia(192;0.000127)					CGGTATCGCCATCAAACGTCT	0.632													28	502					0	0	0.006320	0	0
FAM127C	441518	broad.mit.edu	37	X	134156432	134156432	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134156432C>T	uc004eyc.1	-	1	135	c.58G>A	c.(58-60)GCG>ACG	p.A20T		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	20											0	Acute lymphoblastic leukemia(192;0.000127)					CAGCGACGCGCCGCGGGCCGG	0.657													13	492					0	0	0.001368	0	0
FAM127A	8933	broad.mit.edu	37	X	134166437	134166437	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166437A>G	uc004eyd.2	+	1	105	c.24A>G	c.(22-24)ATA>ATG	p.I8M	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	8											0	Acute lymphoblastic leukemia(192;0.000127)					TGCAGCTGATAAAGGCCCTCC	0.657													12	329					0	0	0.001368	0	0
FAM127A	8933	broad.mit.edu	37	X	134166467	134166467	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166467T>C	uc004eyd.2	+	1	135	c.54T>C	c.(52-54)CCT>CCC	p.P18P	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	18											0	Acute lymphoblastic leukemia(192;0.000127)					CGATCCGGCCTGCGACGCGTC	0.642													12	365					0	0	0.000978	0	0
FAM127A	8933	broad.mit.edu	37	X	134166471	134166471	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166471A>G	uc004eyd.2	+	1	139	c.58A>G	c.(58-60)ACG>GCG	p.T20A	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	20											0	Acute lymphoblastic leukemia(192;0.000127)					CCGGCCTGCGACGCGTCGCTG	0.642													12	372					0	0	0.001368	0	0
FAM127A	8933	broad.mit.edu	37	X	134166515	134166515	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166515C>T	uc004eyd.2	+	1	183	c.102C>T	c.(100-102)GAC>GAT	p.D34D	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	34											0	Acute lymphoblastic leukemia(192;0.000127)					AGACGTTTGACGGCGATACCG	0.627													18	430					0	0	0.004990	0	0
FAM127A	8933	broad.mit.edu	37	X	134166530	134166530	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166530A>G	uc004eyd.2	+	1	198	c.117A>G	c.(115-117)CGA>CGG	p.R39R	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	39											0	Acute lymphoblastic leukemia(192;0.000127)					ATACCGACCGACTCCCGGAGT	0.617													21	401					0	0	0.008871	0	0
FAM127A	8933	broad.mit.edu	37	X	134166555	134166555	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134166555G>A	uc004eyd.2	+	1	223	c.142G>A	c.(142-144)GGC>AGC	p.G48S	uc004eye.1_RNA	NM_001078171	NP_001071639	A6ZKI3	F127A_HUMAN	family with sequence similarity 127, member A	48											0	Acute lymphoblastic leukemia(192;0.000127)					CGTGCAGACGGGCTCCTACAT	0.637													21	328					0	0	0.010504	0	0
CXorf48	54967	broad.mit.edu	37	X	134303554	134303554	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:134303554T>C	uc004eyk.1	-	2	899	c.243A>G	c.(241-243)GAA>GAG	p.E81E	CXorf48_uc004eyl.1_Silent_p.E81E	NM_001031705	NP_001026875	Q8WUE5	CX048_HUMAN	hypothetical protein LOC54967 isoform 1	81											0	Acute lymphoblastic leukemia(192;0.000127)					GTTTATCTTCTTCCACAACCA	0.408													6	33					0	0	0.001168	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995720	140995720	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:140995720A>C	uc004fbt.2	+	4	2816	c.2530A>C	c.(2530-2532)AAG>CAG	p.K844Q	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	844							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTCTTTCCAAGAGTTCCCC	0.542										HNSCC(15;0.026)			10	431					0	0	0.005443	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896220	151896220	+	RNA	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151896220G>A	uc004fgb.2	-	4		c.547C>T						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTGGCTGGTCGGAGTGGCTGG	0.512													34	434					0	0	0.002522	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896249	151896249	+	RNA	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151896249A>C	uc004fgb.2	-	4		c.518T>G						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCCACTCCATTCCTCAGGT	0.522													45	519					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896346	151896346	+	RNA	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151896346C>G	uc004fgb.2	-	4		c.421G>C						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GTTGTCTTGGCAACCTGGAAA	0.527													55	489					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151896643	151896644	+	RNA	DNP	CA	GT	GT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151896643_151896644CA>GT	uc004fgb.2	-	3		c.333_334TG>AC						P43365	MAGAC_HUMAN	Homo sapiens melanoma antigen family A, 12, mRNA (cDNA clone MGC:4914 IMAGE:3450217), complete cds.											skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTGTCTCTCAACAGTCTACT	0.421													69	789					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899882	151899882	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151899882A>G	uc010ntp.2	-	3	1273	c.919T>C	c.(919-921)TGG>CGG	p.W307R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.W307R	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	307	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTAAAAGCCCATTCATGCAGG	0.567													21	885					0	0	0.003954	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899914	151899914	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151899914C>T	uc010ntp.2	-	3	1241	c.887G>A	c.(886-888)GGA>GAA	p.G296E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.G296E	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	296	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AATGTGAGGTCCTCCACTGAT	0.557													50	840					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899921	151899921	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151899921T>C	uc010ntp.2	-	3	1234	c.880A>G	c.(880-882)AGT>GGT	p.S294G	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S294G	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	294	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGTCCTCCACTGATCTTTAGC	0.562													59	856					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900053	151900053	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900053A>G	uc010ntp.2	-	3	1102	c.748T>C	c.(748-750)TTG>CTG	p.L250L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L250L	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	250	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGCACCAAATCTTGGGTG	0.572													38	856					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900060	151900061	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900060_151900061GG>CA	uc010ntp.2	-	3	1094_1095	c.740_741CC>TG	c.(739-741)ACC>ATG	p.T247M	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.T247M	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	247	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAATCTTGGGTGAGCAGCTT	0.574													49	854					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900111	151900111	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900111T>C	uc010ntp.2	-	3	1044	c.690A>G	c.(688-690)GCA>GCG	p.A230A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.A230A	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	230	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCATCAGATGCCTCCAACA	0.567													38	859					0	0	0.009718	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900357	151900357	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900357A>G	uc010ntp.2	-	3	798	c.444T>C	c.(442-444)CCT>CCC	p.P148P	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.P148P|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	148	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGAAGATCACAGGAAAGAAGT	0.512													52	787					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900373	151900373	+	Missense_Mutation	SNP	A	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900373A>C	uc010ntp.2	-	3	782	c.428T>G	c.(427-429)TTC>TGC	p.F143C	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.F143C|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	143	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GAAGTCCTGGAAATTTCTGAT	0.507													38	766					0	0	0.005524	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900383	151900383	+	Missense_Mutation	SNP	T	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900383T>G	uc010ntp.2	-	3	772	c.418A>C	c.(418-420)ATC>CTC	p.I140L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.I140L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	140	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AAATTTCTGATGACACTCCCC	0.507													38	769					0	0	0.006230	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900391	151900391	+	Missense_Mutation	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900391C>T	uc010ntp.2	-	3	764	c.410G>A	c.(409-411)GGG>GAG	p.G137E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.G137E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	137	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GATGACACTCCCCAGCATTTC	0.498													37	760					0	0	0.005524	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900413	151900414	+	Missense_Mutation	DNP	AT	CC	CC			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900413_151900414AT>CC	uc010ntp.2	-	3	741_742	c.387_388AT>GG	c.(385-390)CCATTC>CCGGTC	p.F130V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.F130V|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	130	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCCTTTGTGAATGGCTCCCTGG	0.5													48	701					0	0	0.004672	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900460	151900460	+	Missense_Mutation	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900460G>A	uc010ntp.2	-	3	695	c.341C>T	c.(340-342)GCT>GTT	p.A114V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.A114V|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	114	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AACCAACTCAGCCATCTTCCT	0.502													52	635					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900476	151900476	+	Missense_Mutation	SNP	G	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900476G>T	uc010ntp.2	-	3	679	c.325C>A	c.(325-327)CTC>ATC	p.L109I	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.L109I|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	109	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCTACTGAGTGCTACTTGG	0.507													44	626					9.85913e-13	1.03206e-12	0.009718	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900481	151900481	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900481A>G	uc010ntp.2	-	3	674	c.320T>C	c.(319-321)GTA>GCA	p.V107A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.V107A|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	107										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACTGAGTGCTACTTGGAAGCT	0.512													58	607					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900522	151900522	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900522T>C	uc010ntp.2	-	3	633	c.279A>G	c.(277-279)GAA>GAG	p.E93E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.E93E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	93										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTTGGCCCTTCCTGTTCTT	0.542													30	516					0	0	0.002836	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900533	151900533	+	Missense_Mutation	SNP	C	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900533C>G	uc010ntp.2	-	3	622	c.268G>C	c.(268-270)GAA>CAA	p.E90Q	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.E90Q|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	90										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTGTTCTTCGTTGCTGGAG	0.542													30	506					0	0	0.002836	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900558	151900558	+	Missense_Mutation	SNP	A	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900558A>T	uc010ntp.2	-	3	597	c.243T>A	c.(241-243)AGT>AGA	p.S81R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.S81R|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	81										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CATCGGATTGACTCCAGAGAG	0.582													22	505					0	0	0.002299	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900624	151900624	+	Silent	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900624T>C	uc010ntp.2	-	3	531	c.177A>G	c.(175-177)CCA>CCG	p.P59P	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.P59P|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	59										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGAGGACTTGGTGACTCGG	0.602													42	490					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900657	151900657	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900657G>A	uc010ntp.2	-	3	498	c.144C>T	c.(142-144)GTC>GTT	p.V48V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.V48V|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	48										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCCGCAGGGTGACTTCCACTA	0.627													22	439					0	0	0.009535	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900681	151900681	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900681G>A	uc010ntp.2	-	3	474	c.120C>T	c.(118-120)TCC>TCT	p.S40S	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.S40S|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	40	Poly-Ser.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TAGAGGAGGAGGAGGCAGTCT	0.642													31	395					0	0	0.004289	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900684	151900684	+	Silent	SNP	G	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900684G>A	uc010ntp.2	-	3	471	c.117C>T	c.(115-117)GCC>GCT	p.A39A	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.A39A|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	39										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGAGGAGGCAGTCTCCT	0.647													31	380					0	0	0.005524	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900687	151900687	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900687A>G	uc010ntp.2	-	3	468	c.114T>C	c.(112-114)ACT>ACC	p.T38T	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.T38T|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	38										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGAGGAGGCAGTCTCCTGCT	0.642													32	375					0	0	0.008740	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900728	151900728	+	Silent	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900728A>G	uc010ntp.2	-	3	427	c.73T>C	c.(73-75)TTG>CTG	p.L25L	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.L25L|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	25										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCACCCACCAAGCCCAGGGCC	0.627													28	307					0	0	0.003755	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900745	151900745	+	Missense_Mutation	SNP	T	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900745T>C	uc010ntp.2	-	3	410	c.56A>G	c.(55-57)CAA>CGA	p.Q19R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.Q19R|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	19										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GGCCTCTCCTTGGGCCTCAAG	0.617													25	299					0	0	0.002445	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900762	151900762	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151900762C>T	uc010ntp.2	-	3	393	c.39G>A	c.(37-39)GAG>GAA	p.E13E	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.E13E|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	13										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGGCCTTCCTCAGGCTTGC	0.627													14	264					0	0	0.001855	0	0
CSAG1	158511	broad.mit.edu	37	X	151904512	151904512	+	Missense_Mutation	SNP	A	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151904512A>G	uc004fge.2	+	3	338	c.10A>G	c.(10-12)ACT>GCT	p.T4A	MAGEA12_uc004fgb.2_5'Flank|MAGEA12_uc010ntp.2_5'Flank|MAGEA12_uc004fgc.2_5'Flank|CSAG1_uc004fgf.2_Missense_Mutation_p.T4A|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	4										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AATGTCGGCGACTACAGGTAA	0.224													11	101					0	0	0.000978	0	0
CSAG1	158511	broad.mit.edu	37	X	151908899	151908899	+	Missense_Mutation	SNP	T	G	G	rs148031680	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:151908899T>G	uc004fge.2	+	4	466	c.138T>G	c.(136-138)TTT>TTG	p.F46L	CSAG1_uc004fgf.2_Missense_Mutation_p.F46L|CSAG1_uc004fgd.2_RNA	NM_153478	NP_705611	Q6PB30	CSAG1_HUMAN	chondrosarcoma associated gene 1 precursor	46										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGCCCATTTTCCAACAACC	0.562													34	872					0	0	0.003610	0	0
PLXNB3	5365	broad.mit.edu	37	X	153033841	153033841	+	Silent	SNP	C	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:153033841C>T	uc004fii.2	+	4	1398	c.1224C>T	c.(1222-1224)CAC>CAT	p.H408H	PLXNB3_uc011mzb.1_Intron|PLXNB3_uc011mzc.1_Silent_p.H90H|PLXNB3_uc010nuk.2_Silent_p.H431H|PLXNB3_uc011mzd.1_Silent_p.H47H	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	408	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGATGGGCACATGATAGCCT	0.697													7	42					0	0	0.003080	0	0
RERE	473	broad.mit.edu	37	1	8716281	8716281	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:8716281delT	uc001ape.2	-	3	886	c.76delA	c.(76-78)AGAfs	p.R26fs	RERE_uc001apf.2_Frame_Shift_Del_p.R26fs|RERE_uc001aph.1_Frame_Shift_Del_p.R26fs	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	26					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GCTTTGTCTCTTTTCtctctc	0.343													9	251	---	---	---	---					
SPEN	23013	broad.mit.edu	37	1	16255140	16255140	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:16255140delT	uc001axk.1	+	11	2609	c.2405delT	c.(2404-2406)GTGfs	p.V802fs	SPEN_uc010obp.1_Frame_Shift_Del_p.V761fs	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	802	Arg-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CCGGAGAGAGTGGAGAGAGAG	0.433													9	106	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27057930	27057931	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:27057930_27057931insC	uc001bmv.1	+	3	2011_2012	c.1638_1639insC	c.(1636-1641)CAGAGCfs	p.Q546fs	ARID1A_uc001bmt.1_Frame_Shift_Ins_p.Q546fs|ARID1A_uc001bmu.1_Frame_Shift_Ins_p.Q546fs|ARID1A_uc001bmw.1_Frame_Shift_Ins_p.Q163fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	546_547					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding	p.Q546*(1)		ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AGCACCCCCAGAGCCAGCCCCC	0.649			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								14	1130	---	---	---	---					
ARID1A	8289	broad.mit.edu	37	1	27057991	27057991	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:27057991delC	uc001bmv.1	+	3	2072	c.1699delC	c.(1699-1701)CAGfs	p.Q567fs	ARID1A_uc001bmt.1_Frame_Shift_Del_p.Q567fs|ARID1A_uc001bmu.1_Frame_Shift_Del_p.Q567fs|ARID1A_uc001bmw.1_Frame_Shift_Del_p.Q184fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	567	Poly-Gln.				androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCAACCTCAGCAGCCAGCACC	0.637			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								15	1002	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	54307532	54307532	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:54307532delA								TMEM48 (3357 upstream) : YIPF1 (9875 downstream)																							cctgggcaacaagagtaaaac	0.264													17	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121485189	121485190	+	IGR	INS	-	G	G	rs28893884		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:121485189_121485190insG								LOC647121 (171503 upstream) : None (None downstream)																							tggaatttgcaagtggagattt	0.000													8	1780	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	152050706	152050707	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152050706_152050707insG								S100A11 (41195 upstream) : TCHHL1 (5913 downstream)																							cttgctctgtcaccaggctgga	0.188													11	454	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	152050707	152050708	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152050707_152050708insC								S100A11 (41196 upstream) : TCHHL1 (5912 downstream)																							ttgctctgtcaccaggctggag	0.183													33	418	---	---	---	---					
TCHH	7062	broad.mit.edu	37	1	152083818	152083820	+	In_Frame_Del	DEL	CGG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152083818_152083820delCGG	uc001ezp.2	-	2	1873_1875	c.1873_1875delCCG	c.(1873-1875)CCGdel	p.P625del	TCHH_uc009wne.1_In_Frame_Del_p.P625del	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	625	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCCTCCGGCTCCTCGCGC	0.680													15	250	---	---	---	---					
FLG2	388698	broad.mit.edu	37	1	152324569	152324569	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:152324569delC	uc001ezw.3	-	3	5766	c.5693delG	c.(5692-5694)GGAfs	p.G1898fs	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1898							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGTGTGTGTCCTGAATGTGT	0.502													11	543	---	---	---	---					
LY9	4063	broad.mit.edu	37	1	160765879	160765880	+	5'Flank	DEL	TG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:160765879_160765880delTG	uc001fwu.2	+						LY9_uc001fwt.2_5'Flank|LY9_uc010pjs.1_5'Flank|LY9_uc001fwv.2_5'Flank|LY9_uc001fww.2_5'Flank|LY9_uc001fwx.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a						cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			cacatacacatgcacacacaca	0.381													9	181	---	---	---	---					
F5	2153	broad.mit.edu	37	1	169510492	169510492	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:169510492delT	uc001ggg.1	-	13	3981	c.3836delA	c.(3835-3837)GACfs	p.D1279fs		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1279	2-11.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATGGCTGAGGTCTGGAGAAAG	0.493													12	877	---	---	---	---					
F5	2153	broad.mit.edu	37	1	169510600	169510600	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:169510600delT	uc001ggg.1	-	13	3873	c.3728delA	c.(3727-3729)GACfs	p.D1243fs		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1243	2-7.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATGGCTGAGGTCTGGAGAAAG	0.522													10	1181	---	---	---	---					
F5	2153	broad.mit.edu	37	1	169510627	169510627	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:169510627delT	uc001ggg.1	-	13	3846	c.3701delA	c.(3700-3702)GACfs	p.D1234fs		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1234	35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.|2-6.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	ATGGCTGAGGTCTGGAGAAAT	0.512													11	1292	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276010	186276011	+	In_Frame_Ins	INS	-	AGG	AGG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:186276010_186276011insAGG	uc001gru.3	+	7	1210_1211	c.1159_1160insAGG	c.(1159-1161)AAG>AAGGAG	p.387_388insE	PRG4_uc001grt.3_In_Frame_Ins_p.346_347insE|PRG4_uc009wyl.2_In_Frame_Ins_p.294_295insE|PRG4_uc009wym.2_In_Frame_Ins_p.253_254insE|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	387_388	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|6; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CACCACCACCAAGTCTGCACCC	0.634													32	901	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276044	186276046	+	In_Frame_Del	DEL	CCA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:186276044_186276046delCCA	uc001gru.3	+	7	1244_1246	c.1193_1195delCCA	c.(1192-1197)CCCACC>CCC	p.T401del	PRG4_uc001grt.3_In_Frame_Del_p.T360del|PRG4_uc009wyl.2_In_Frame_Del_p.T308del|PRG4_uc009wym.2_In_Frame_Del_p.T267del|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	401	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|7.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GAGCCTGCACCCACCACCACCAA	0.650													16	861	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276356	186276358	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:186276356_186276358delCTC	uc001gru.3	+	7	1556_1558	c.1505_1507delCTC	c.(1504-1509)ACTCCC>ACC	p.P503del	PRG4_uc001grt.3_In_Frame_Del_p.P462del|PRG4_uc009wyl.2_In_Frame_Del_p.P410del|PRG4_uc009wym.2_In_Frame_Del_p.P369del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	503	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|20.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCACCCACCACTCCCAAGGAGCC	0.645													8	1010	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276374	186276376	+	In_Frame_Del	DEL	CCA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:186276374_186276376delCCA	uc001gru.3	+	7	1574_1576	c.1523_1525delCCA	c.(1522-1527)CCCACC>CCC	p.T511del	PRG4_uc001grt.3_In_Frame_Del_p.T470del|PRG4_uc009wyl.2_In_Frame_Del_p.T418del|PRG4_uc009wym.2_In_Frame_Del_p.T377del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	511	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|21.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GAGCCTGCACCCACCACCACCAA	0.645													21	1069	---	---	---	---					
PRG4	10216	broad.mit.edu	37	1	186276524	186276526	+	In_Frame_Del	DEL	AGG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr1:186276524_186276526delAGG	uc001gru.3	+	7	1724_1726	c.1673_1675delAGG	c.(1672-1677)AAGGAG>AAG	p.E559del	PRG4_uc001grt.3_In_Frame_Del_p.E518del|PRG4_uc009wyl.2_In_Frame_Del_p.E466del|PRG4_uc009wym.2_In_Frame_Del_p.E425del|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	559	28.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCACCACCAAGGAGCCTGCACC	0.635													17	758	---	---	---	---					
BMI1	648	broad.mit.edu	37	10	22607189	22607190	+	5'Flank	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:22607189_22607190insC	uc001irh.2	+						COMMD3_uc001ire.2_Intron|COMMD3_uc001irf.2_Intron|COMMD3_uc001irg.2_Intron|BMI1_uc009xkg.2_Intron	NM_005180	NP_005171	P35226	BMI1_HUMAN	BMI1 polycomb ring finger oncogene						hemopoiesis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fibroblast proliferation|positive regulation of ubiquitin-protein ligase activity|segment specification|transcription, DNA-dependent	cytoplasm|nucleolus|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			ovary(1)|skin(1)	2						ttgctttcttttttctctcCAG	0.262													5	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													7	124	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:42528030delG								None (None upstream) : LOC441666 (299285 downstream)																							attatatgaagaaatcccgtt	0.000													19	116	---	---	---	---					
AFAP1L2	84632	broad.mit.edu	37	10	116059091	116059094	+	Frame_Shift_Del	DEL	CTTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:116059091_116059094delCTTC	uc001lbn.2	-	16	2339_2342	c.2038_2041delGAAG	c.(2038-2043)GAAGAAfs	p.E680fs	AFAP1L2_uc001lbo.2_Frame_Shift_Del_p.E680fs|AFAP1L2_uc010qse.1_Frame_Shift_Del_p.E733fs|AFAP1L2_uc001lbp.2_Frame_Shift_Del_p.E708fs|AFAP1L2_uc001lbr.1_Frame_Shift_Del_p.E679fs|AFAP1L2_uc001lbm.2_Frame_Shift_Del_p.E119fs|AFAP1L2_uc010qsd.1_Frame_Shift_Del_p.E246fs|AFAP1L2_uc001lbq.1_Frame_Shift_Del_p.E202fs	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	680_681	Potential.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		CCCCGGATTTCTTCCTTCTTCTTT	0.549													15	84	---	---	---	---					
MKI67	4288	broad.mit.edu	37	10	129903675	129903675	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:129903675delG	uc001lke.2	-	13	6624	c.6429delC	c.(6427-6429)ACCfs	p.T2143fs	MKI67_uc001lkf.2_Frame_Shift_Del_p.T1783fs|MKI67_uc009yav.1_Frame_Shift_Del_p.T1718fs|MKI67_uc009yaw.1_Frame_Shift_Del_p.T1293fs	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2143	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTGTGTGTGTGGTCTGTGTGA	0.498													16	469	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262780	130262780	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr10:130262780delA								MKI67 (338312 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.000													37	124	---	---	---	---					
KRTAP5-4	387267	broad.mit.edu	37	11	1642774	1642776	+	In_Frame_Del	DEL	AGT	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:1642774_1642776delAGT	uc009ycy.1	-	4	773_775	c.686_688delACT	c.(685-690)TACTGC>TGC	p.Y229del		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	243	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GACTGGCAGCAGTAGGGCTTGCA	0.616													25	768	---	---	---	---					
HIPK3	10114	broad.mit.edu	37	11	33363151	33363151	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:33363151delC	uc001mul.1	+	8	2086	c.1816delC	c.(1816-1818)CCTfs	p.P606fs	HIPK3_uc001mum.1_Frame_Shift_Del_p.P606fs|HIPK3_uc009yjv.1_Frame_Shift_Del_p.P606fs	NM_005734	NP_005725	Q9H422	HIPK3_HUMAN	homeodomain interacting protein kinase 3 isoform	606					anti-apoptosis|apoptosis|negative regulation of JUN kinase activity|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)|skin(1)|stomach(1)|ovary(1)|pancreas(1)	5						CCATGGAATACCTCTGCAGGC	0.398													7	82	---	---	---	---					
AHNAK	79026	broad.mit.edu	37	11	62295435	62295436	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:62295435_62295436insA	uc001ntl.2	-	5	6753_6754	c.6453_6454insT	c.(6451-6456)GTGGATfs	p.V2151fs	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2151_2152					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ACCTCCACATCCACACTGGGGC	0.500													7	349	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71276851	71276851	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71276851delA	uc001oqt.1	+	1	243	c.218delA	c.(217-219)GACfs	p.D73fs		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	73	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						TCCAAGGGGGACTGTGGCTCT	0.672													8	1453	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71277097	71277098	+	In_Frame_Ins	INS	-	GTC	GTC			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71277097_71277098insGTC	uc001oqt.1	+	1	489_490	c.464_465insGTC	c.(463-465)GGA>GGGTCA	p.156_157insS		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	156_157	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						tcaggctgtggatcctgctgcc	0.238													14	801	---	---	---	---					
KRTAP5-10	387273	broad.mit.edu	37	11	71277147	71277161	+	In_Frame_Del	DEL	TGCTGTGTCCCCGTG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr11:71277147_71277161delTGCTGTGTCCCCGTG	uc001oqt.1	+	1	539_553	c.514_528delTGCTGTGTCCCCGTG	c.(514-528)TGCTGTGTCCCCGTGdel	p.CCVPV172del		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	172_176	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						ccagtccagctgctgtgtccccgtgtgctgccagt	0.200													81	647	---	---	---	---					
WNK1	65125	broad.mit.edu	37	12	1017064	1017064	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:1017064delA	uc001qio.3	+	27	7202	c.6695delA	c.(6694-6696)CAAfs	p.Q2232fs	WNK1_uc001qip.3_Frame_Shift_Del_p.Q1984fs|WNK1_uc001qir.3_Frame_Shift_Del_p.Q1405fs|WNK1_uc009zdn.1_RNA	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	2232					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAAGCCGCCCAAGCTCAGCCT	0.493													7	907	---	---	---	---					
PHB2	11331	broad.mit.edu	37	12	7076944	7076944	+	Splice_Site	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:7076944delT	uc001qsd.2	-	6	818	c.608_splice	c.e6-1	p.A203_splice	PHB2_uc010sft.1_Intron|PHB2_uc010sfu.1_3'UTR|PHB2_uc001qse.1_5'Flank|PHB2_uc001qsf.1_5'Flank|PHB2_uc009zfn.1_5'Flank|SCARNA12_uc001qsg.2_5'Flank	NM_001144831	NP_001138303	Q99623	PHB2_HUMAN	prohibitin 2 isoform 1						negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial inner membrane|nucleus	estrogen receptor binding|receptor activity			ovary(2)|pancreas(1)	3						CCTGCTGGGCTGTGGTGGGAG	0.617													8	535	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11545986	11545987	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:11545986_11545987insGGA	uc010shk.1	-	3	1060_1061	c.1025_1026insTCC	c.(1024-1026)CCA>CCTCCA	p.342_342P>PP		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GTGGCTTTCCTGGAGGTGGGGG	0.604													56	1090	---	---	---	---					
TPCN1	53373	broad.mit.edu	37	12	113704096	113704098	+	In_Frame_Del	DEL	CTG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:113704096_113704098delCTG	uc001tuw.2	+	4	646_648	c.349_351delCTG	c.(349-351)CTGdel	p.L122del	TPCN1_uc001tux.2_In_Frame_Del_p.L194del|TPCN1_uc010syt.1_In_Frame_Del_p.L54del	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	122	Helical; Name=S1 of repeat I; (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						GGCCACGGCCCTGCTGCTGCTGC	0.640													7	825	---	---	---	---					
EP400	57634	broad.mit.edu	37	12	132534927	132534927	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr12:132534927delA	uc001ujn.2	+	39	7295	c.7260delA	c.(7258-7260)ACAfs	p.T2420fs	EP400_uc001ujl.2_Frame_Shift_Del_p.T2419fs|EP400_uc001ujm.2_Frame_Shift_Del_p.T2339fs	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2456					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGAATGCCACACACACCCAGC	0.473													8	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	19701241	19701241	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr13:19701241delA								DKFZp686A1627 (8818 upstream) : TUBA3C (46679 downstream)																							acagggtcttaactctgtcac	0.139													8	34	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	64228905	64228905	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr14:64228905delT								SGPP1 (34149 upstream) : SYNE2 (90778 downstream)																							atcccagcacttttgggagac	0.085													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22691504	22691504	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:22691504delT								MIR1268 (178224 upstream) : GOLGA8DP (10781 downstream)																							ACAAAATGGGTTTCCTGTCTC	0.502													9	193	---	---	---	---					
CGNL1	84952	broad.mit.edu	37	15	57839579	57839580	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:57839579_57839580insG	uc002aeg.2	+	19	3876_3877	c.3800_3801insG	c.(3799-3801)CTGfs	p.L1267fs	CGNL1_uc010bfw.2_Frame_Shift_Ins_p.L1267fs	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1267	Tail.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGTAAAGTGCTGGATGACATGG	0.569													14	242	---	---	---	---					
PARP6	56965	broad.mit.edu	37	15	72546854	72546856	+	In_Frame_Del	DEL	TTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:72546854_72546856delTTC	uc002auc.2	-	14	1590_1592	c.1131_1133delGAA	c.(1129-1134)AAGAAT>AAT	p.K377del	PARP6_uc002aua.2_In_Frame_Del_p.K222del|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_In_Frame_Del_p.K377del	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	377							NAD+ ADP-ribosyltransferase activity				0						CCGCTCATAATTCTTCTTCTGTG	0.438													19	93	---	---	---	---					
SIN3A	25942	broad.mit.edu	37	15	75668156	75668156	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:75668156delC	uc002bai.2	-	20	3700	c.3441delG	c.(3439-3441)GGGfs	p.G1147fs	SIN3A_uc002baj.2_Frame_Shift_Del_p.G1147fs|SIN3A_uc010uml.1_Frame_Shift_Del_p.G1147fs	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	1147					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TTCCTTCCTTCCCTTCCTTTT	0.493													8	305	---	---	---	---					
ANPEP	290	broad.mit.edu	37	15	90349638	90349639	+	In_Frame_Ins	INS	-	GAC	GAC			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr15:90349638_90349639insGAC	uc002bop.3	-	2	468_469	c.176_177insGTC	c.(175-177)CCC>CCGTCC	p.59_60insS		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	59_60	Extracellular.|Cytosolic Ser/Thr-rich junction.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	TGGCCGAGGCGGGGTTGGTGGT	0.614													9	668	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	84308	84308	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:84308delT								None (None upstream) : POLR3K (12692 downstream)																							cacgctcacataacacacagg	0.254													2	4	---	---	---	---					
SRRM2	23524	broad.mit.edu	37	16	2812559	2812561	+	In_Frame_Del	DEL	GCA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:2812559_2812561delGCA	uc002crk.2	+	11	2579_2581	c.2030_2032delGCA	c.(2029-2034)CGCAGT>CGT	p.S678del	SRRM2_uc002crj.1_In_Frame_Del_p.S582del|SRRM2_uc002crl.1_In_Frame_Del_p.S678del|SRRM2_uc010bsu.1_In_Frame_Del_p.S582del	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	678	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCAGCTAGACGCAGTGGTCGCTC	0.611													11	208	---	---	---	---					
CLDN6	9074	broad.mit.edu	37	16	3065693	3065694	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:3065693_3065694insG	uc002csu.3	-	2	389_390	c.329_330insC	c.(328-330)GAGfs	p.E110fs		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	110	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGGAATCCTTCTCCTCCACACA	0.609													21	220	---	---	---	---					
EIF3C	8663	broad.mit.edu	37	16	28403353	28403355	+	Splice_Site	DEL	TCC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:28403353_28403355delTCC	uc002dph.3	-	9	1021	c.884_splice	c.e9+1	p.D295_splice	EIF3CL_uc002dpf.3_In_Frame_Del_p.E41del|EIF3C_uc002dpg.3_In_Frame_Del_p.E295del|EIF3CL_uc010byb.2_In_Frame_Del_p.E295del|EIF3CL_uc010vcs.1_In_Frame_Del_p.E285del|EIF3CL_uc010byc.2_In_Frame_Del_p.E295del|EIF3CL_uc002dpi.3_Splice_Site_p.D295_splice	NM_001037808	NP_001032897	Q99613	EIF3C_HUMAN	eukaryotic translation initiation factor 3,							cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			skin(1)	1						GCCTTCATTGTCCTCCTCCTCCT	0.547													9	29	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	60391395	60391396	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:60391395_60391396insG								None (None upstream) : None (None downstream)																							cttgctctgtcaccaggctgga	0.173													9	386	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	60391396	60391397	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:60391396_60391397insC								None (None upstream) : None (None downstream)																							ttgctctgtcaccaggctggag	0.168													42	355	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	88226611	88226611	+	IGR	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr16:88226611delG								BANP (115688 upstream) : ZNF469 (267268 downstream)																							tggtggtgatggtggtgatgg	0.000													10	81	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	3169042	3169043	+	IGR	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:3169042_3169043insA								OR1A1 (49200 upstream) : OR3A2 (12142 downstream)																							TGCTCATCATCCTGGCCATCAG	0.540													8	221	---	---	---	---					
EFCAB5	374786	broad.mit.edu	37	17	28434977	28434977	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:28434977delT	uc002het.2	+	23	4639	c.4447delT	c.(4447-4449)TTGfs	p.L1483fs	EFCAB5_uc010cse.2_Frame_Shift_Del_p.L1238fs|EFCAB5_uc010csf.2_Frame_Shift_Del_p.L834fs	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1483							calcium ion binding			ovary(1)|skin(1)	2						TACACCTCCGTTGCCCTCCAA	0.373													9	49	---	---	---	---					
TOP2A	7153	broad.mit.edu	37	17	38557114	38557116	+	In_Frame_Del	DEL	TTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:38557114_38557116delTTC	uc002huq.2	-	21	2776_2778	c.2650_2652delGAA	c.(2650-2652)GAAdel	p.E884del		NM_001067	NP_001058	P11388	TOP2A_HUMAN	DNA topoisomerase II, alpha isozyme	884					apoptotic chromosome condensation|DNA ligation|DNA repair|DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|phosphatidylinositol-mediated signaling|positive regulation of apoptosis|positive regulation of retroviral genome replication|resolution of meiotic recombination intermediates|sister chromatid segregation	cytoplasm|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|drug binding|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity|ubiquitin binding			ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00183)		Amsacrine(DB00276)|Ciprofloxacin(DB00537)|Dexrazoxane(DB00380)|Doxorubicin(DB00997)|Enoxacin(DB00467)|Epirubicin(DB00445)|Etoposide(DB00773)|Fleroxacin(DB04576)|Gatifloxacin(DB01044)|Idarubicin(DB01177)|Levofloxacin(DB01137)|Lomefloxacin(DB00978)|Lucanthone(DB04967)|Mitoxantrone(DB01204)|Moxifloxacin(DB00218)|Norfloxacin(DB01059)|Ofloxacin(DB01165)|Pefloxacin(DB00487)|Podofilox(DB01179)|Sparfloxacin(DB01208)|Teniposide(DB00444)|Trovafloxacin(DB00685)|Valrubicin(DB00385)	TTGGCAAAGGTTCTTCTCCATCC	0.389													24	183	---	---	---	---					
VEZF1	7716	broad.mit.edu	37	17	56056586	56056587	+	In_Frame_Ins	INS	-	TGT	TGT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:56056586_56056587insTGT	uc002ivf.1	-	5	1207_1208	c.1064_1065insACA	c.(1063-1065)CAT>CAACAT	p.354_355insQ	VEZF1_uc010dcn.1_In_Frame_Ins_p.204_205insQ	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	354_355					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						AGCTTGTCACAtgttgttgttg	0.317													16	440	---	---	---	---					
SLC16A3	9123	broad.mit.edu	37	17	80195130	80195130	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr17:80195130delG	uc002kea.2	+	4	623	c.484delG	c.(484-486)GCCfs	p.A162fs	SLC16A3_uc002kee.2_Frame_Shift_Del_p.A162fs|SLC16A3_uc002keb.2_Frame_Shift_Del_p.A162fs|SLC16A3_uc002kec.2_Frame_Shift_Del_p.A162fs|SLC16A3_uc002ked.2_Frame_Shift_Del_p.A162fs	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	162	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	CTTCCTGTGTGCCCTGAGCCC	0.682													2	4	---	---	---	---					
SEH1L	81929	broad.mit.edu	37	18	12955510	12955510	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr18:12955510delG	uc002krr.2	+	3	349	c.211delG	c.(211-213)GGGfs	p.G71fs	SEH1L_uc002krq.2_Frame_Shift_Del_p.G71fs	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	71	WD 2.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						TCCTGAATTTGGGCAGGTTTT	0.448													15	466	---	---	---	---					
ZFR2	23217	broad.mit.edu	37	19	3871112	3871116	+	5'Flank	DEL	GCTTG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:3871112_3871116delGCTTG	uc002lyw.2	-						ZFR2_uc010xhx.1_5'Flank|ZFR2_uc002lyx.3_5'Flank|ZFR2_uc010xhy.1_5'Flank	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1							intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		ttttttttttgcttgtttttttttt	0.263													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	23650800	23650800	+	IGR	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:23650800delG								ZNF91 (72531 upstream) : ZNF675 (184909 downstream)																							ttctcctcttgtccttctctt	0.000													2	4	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	38948170	38948173	+	Frame_Shift_Del	DEL	AATG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:38948170_38948173delAATG	uc002oit.2	+	17	1955_1958	c.1825_1828delAATG	c.(1825-1830)AATGGTfs	p.N609fs	RYR1_uc002oiu.2_Frame_Shift_Del_p.N609fs	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	609_610	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTGTGTGTGTAATGGTGTGGCTGT	0.525													7	987	---	---	---	---					
RYR1	6261	broad.mit.edu	37	19	39001386	39001387	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:39001386_39001387insT	uc002oit.2	+	60	9217_9218	c.9087_9088insT	c.(9085-9090)GGCCACfs	p.G3029fs	RYR1_uc002oiu.2_Frame_Shift_Ins_p.G3029fs|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3029_3030	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCAGCGGTGGCCACGCCTCTAA	0.564													16	455	---	---	---	---					
SPHK2	56848	broad.mit.edu	37	19	49132379	49132380	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:49132379_49132380delAG	uc002pjr.2	+	7	1680_1681	c.1314_1315delAG	c.(1312-1317)CCAGAAfs	p.P438fs	SPHK2_uc010xzt.1_Frame_Shift_Del_p.P379fs|SPHK2_uc002pjs.2_Frame_Shift_Del_p.P438fs|SPHK2_uc002pjt.2_Frame_Shift_Del_p.P232fs|SPHK2_uc002pju.2_Intron|SPHK2_uc002pjv.2_Frame_Shift_Del_p.P402fs|SPHK2_uc002pjw.2_Frame_Shift_Del_p.P500fs	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	438_439					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		ctggctcgccAGAACCCCTGCC	0.366													10	92	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	49526035	49526035	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:49526035delC								LHB (5688 upstream) : CGB (92 downstream)																							CCAGAGTTCTCATACTGTGAC	0.458													11	102	---	---	---	---					
SIGLEC16	400709	broad.mit.edu	37	19	50473433	50473434	+	RNA	INS	-	TTCT	TTCT	rs4009628		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:50473433_50473434insTTCT	uc002prf.2	+	2		c.452_453insTTCT			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						TGAACAATTTGTTCTAAAAGTA	0.550													10	201	---	---	---	---					
ACPT	93650	broad.mit.edu	37	19	51298096	51298097	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:51298096_51298097delCT	uc002pta.1	+	10	1040_1041	c.1040_1041delCT	c.(1039-1041)CCTfs	p.P347fs		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	347	Extracellular (Potential).					integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CTGCCCCTGCCTCTCAGCCTCC	0.673													10	951	---	---	---	---					
MIR517A	574479	broad.mit.edu	37	19	54215475	54215476	+	5'Flank	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:54215475_54215476insC	hsa-mir-517a|MI0003161	+						MIR519D_hsa-mir-519d|MI0003162_5'Flank																	0						ccaccaccgcatccagcctggg	0.119													17	81	---	---	---	---					
LILRB3	11025	broad.mit.edu	37	19	54723027	54723029	+	In_Frame_Del	DEL	CGT	-	-	rs61734492	byFrequency	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr19:54723027_54723029delCGT	uc002qef.1	-	8	1506_1508	c.1395_1397delACG	c.(1393-1398)CGACGT>CGT	p.465_466RR>R	LILRB3_uc002qee.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc002qeh.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_In_Frame_Del_p.465_466RR>R|LILRA6_uc002qek.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc010erh.1_In_Frame_Del_p.482_483RR>R|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_In_Frame_Del_p.465_466RR>R|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc002qep.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc002qeq.1_In_Frame_Del_p.465_466RR>R|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_In_Frame_Del_p.465_466RR>R	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	465_466	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTGACGCTGACGTCggaggagga	0.498													7	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	64602859	64602859	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:64602859delC								PELI1 (231254 upstream) : HSPC159 (78468 downstream)																							ccatcaccatcaccaccacca	0.000													7	90	---	---	---	---					
TMEM150A	129303	broad.mit.edu	37	2	85829046	85829047	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:85829046_85829047delAC	uc002spw.1	-	1	746_747	c.25_26delGT	c.(25-27)GTCfs	p.V9fs	USP39_uc002sqb.2_5'Flank|TMEM150A_uc002spx.1_5'UTR|TMEM150A_uc002spz.1_5'UTR|TMEM150A_uc002sqa.1_5'UTR|TMEM150A_uc002spy.1_Frame_Shift_Del_p.V9fs	NM_001031738	NP_001026908	Q86TG1	T150A_HUMAN	transmembrane protein 150A isoform 1	9						integral to membrane|plasma membrane					0						TGACAGGCTGACAGGCAGGAGG	0.614													7	573	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91795852	91795853	+	IGR	INS	-	A	A	rs148297313		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:91795852_91795853insA								None (None upstream) : LOC654342 (9339 downstream)																							TGAGCATAATTAAGGTTTCTTC	0.441													4	6	---	---	---	---					
RANBP2	5903	broad.mit.edu	37	2	109380070	109380070	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:109380070delA	uc002tem.3	+	20	3201	c.3075delA	c.(3073-3075)ACAfs	p.T1025fs		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1025					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AAGCACACACAACACAGCCAA	0.428													7	236	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130751147	130751148	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:130751147_130751148insG								RAB6C (10836 upstream) : LOC440905 (32424 downstream)																							CCCTCGGCCCCCCATGCCCGGG	0.604													12	76	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018713	133018714	+	IGR	DEL	GG	-	-	rs144729406		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr2:133018713_133018714delGG								NCRNA00164 (3171 upstream) : GPR39 (155433 downstream)																							TGGGCGGGGTGGTGGGGGGTGC	0.530													7	13	---	---	---	---					
PI3	5266	broad.mit.edu	37	20	43803477	43803478	+	5'Flank	DEL	CA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr20:43803477_43803478delCA	uc002xng.2	+							NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein						copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TTGTAAATACCACAGACCCGCC	0.520													7	49	---	---	---	---					
KRTAP13-4	284827	broad.mit.edu	37	21	31802583	31802584	+	5'Flank	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:31802583_31802584insT	uc011acw.1	+							NM_181600	NP_853631	Q3LI77	KR134_HUMAN	keratin associated protein 13-4							intermediate filament					0						GAACTCCCATCTCTCATCAGCA	0.510													8	506	---	---	---	---					
KRTAP19-2	337969	broad.mit.edu	37	21	31859698	31859700	+	5'Flank	DEL	ACC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:31859698_31859700delACC	uc011acy.1	-							NM_181608	NP_853639	Q3LHN2	KR192_HUMAN	keratin associated protein 19-2							intermediate filament					0						CATAGCCCAGACCTCCACAGTAG	0.542													16	313	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551471	42551472	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:42551471_42551472insC	uc002yyz.2	-	1	5695_5696	c.84_85insG	c.(82-87)CTGACAfs	p.L28fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	28_29											0		Prostate(19;2.29e-06)				AGTGAGGGTGTCAGGGTGAGTG	0.569													7	253	---	---	---	---					
KRTAP10-11	386678	broad.mit.edu	37	21	46066912	46066913	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr21:46066912_46066913insA	uc002zfr.3	+	1	582_583	c.537_538insA	c.(535-540)TGCACCfs	p.C179fs	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	179_180	25 X 5 AA repeats of C-C-X(3).|17.					keratin filament				ovary(1)	1						CAGCTTGCTGCACCTCCTCCTC	0.545													7	514	---	---	---	---					
SCN10A	6336	broad.mit.edu	37	3	38833543	38833546	+	Frame_Shift_Del	DEL	GTGG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:38833543_38833546delGTGG	uc003ciq.2	-	2	384_387	c.384_387delCCAC	c.(382-387)GTCCACfs	p.V128fs		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	128_129	Helical; Name=S1 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AAGGATATGAGTGGACAGACACTT	0.485													7	151	---	---	---	---					
SLC41A3	54946	broad.mit.edu	37	3	125741697	125741698	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:125741697_125741698insA	uc003eij.2	-	6	902_903	c.676_677insT	c.(676-678)GCCfs	p.A226fs	SLC41A3_uc003eii.2_Frame_Shift_Ins_p.A200fs|SLC41A3_uc003eil.2_Frame_Shift_Ins_p.A226fs|SLC41A3_uc003eik.2_Frame_Shift_Ins_p.A190fs|SLC41A3_uc011bkh.1_Frame_Shift_Ins_p.A109fs|SLC41A3_uc010hsd.1_Frame_Shift_Ins_p.A241fs	NM_001008485	NP_001008485	Q96GZ6	S41A3_HUMAN	solute carrier family 41, member 3 isoform 1	226	Helical; (Potential).					integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(114;0.167)		TCCCAGGCTGGCTGCAATGGGC	0.505													10	394	---	---	---	---					
TMCC1	23023	broad.mit.edu	37	3	129370392	129370393	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:129370392_129370393insA	uc003emz.3	-	7	2394_2395	c.1893_1894insT	c.(1891-1896)ATTGCCfs	p.I631fs	TMCC1_uc003emy.3_Frame_Shift_Ins_p.I307fs|TMCC1_uc011blc.1_Frame_Shift_Ins_p.I452fs|TMCC1_uc010htg.2_Frame_Shift_Ins_p.I517fs	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	631_632	Helical; (Potential).					integral to membrane				skin(1)	1						CAGAGAAAGGCAATAAAAACCA	0.500													13	162	---	---	---	---					
FNDC3B	64778	broad.mit.edu	37	3	172061972	172061972	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:172061972delA	uc003fhy.2	+	19	2346	c.2174delA	c.(2173-2175)GAGfs	p.E725fs	FNDC3B_uc003fhz.3_Frame_Shift_Del_p.E725fs	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	725	Fibronectin type-III 5.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		CATGGCCCAGAGCTGGAGTGC	0.572													10	267	---	---	---	---					
LAMP3	27074	broad.mit.edu	37	3	182871811	182871812	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:182871811_182871812insT	uc003flh.3	-	2	641_642	c.417_418insA	c.(415-420)ACCCCAfs	p.T139fs		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	139_140	Lumenal (Potential).|Thr-rich.				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TGAGCTGGTGGGGTGATGGTGG	0.535													7	1227	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	186478893	186478893	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr3:186478893delT								KNG1 (17152 upstream) : EIF4A2 (22468 downstream)																							gtagctgggatttacaggtgt	0.204													15	204	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388714	1388715	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:1388714_1388715delCA	uc003gdf.2	+	1	3375_3376	c.415_416delCA	c.(415-417)CACfs	p.H139fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	139	3.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.708													10	207	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1388807	1388808	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:1388807_1388808delCA	uc003gdf.2	+	1	3468_3469	c.508_509delCA	c.(508-510)CACfs	p.H170fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	170	4.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.683													9	598	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389330	1389331	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:1389330_1389331delCA	uc003gdf.2	+	1	3991_3992	c.1031_1032delCA	c.(1030-1032)TCAfs	p.S344fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	344					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCCA	0.658													15	783	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	69901184	69901185	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:69901184_69901185insC								UGT2A3 (83675 upstream) : UGT2B7 (61008 downstream)																							CTTGCCAAGATCCACAGAAGGA	0.396													12	61	---	---	---	---					
SMR3B	10879	broad.mit.edu	37	4	71255479	71255480	+	In_Frame_Ins	INS	-	CCG	CCG			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:71255479_71255480insCCG	uc011cas.1	+	3	235_236	c.154_155insCCG	c.(154-156)CCA>CCCGCA	p.52_53insA	SMR3B_uc003hfh.2_In_Frame_Ins_p.52_53insA	NM_006685	NP_006676	P02814	SMR3B_HUMAN	submaxillary gland androgen regulated protein 3	52_53	Poly-Pro.|Pro-rich.					extracellular space				skin(1)	1		all_hematologic(202;0.196)				ACCTCCTCCTCCACCCTATGGT	0.599													8	237	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	113660026	113660026	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:113660026delC								LARP7 (81285 upstream) : ANK2 (79213 downstream)																							CAACaacaaacaaacaaacaa	0.403													9	302	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	119435092	119435093	+	In_Frame_Ins	INS	-	CAA	CAA			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:119435092_119435093insCAA	uc010imy.1	+	2	447_448	c.378_379insCAA	c.(376-381)insCAA	p.128_129insQ	CEP170L_uc003icb.2_5'Flank					Homo sapiens cDNA, FLJ98257.																		TAGCAAAACTTCAACAAGAACA	0.381													8	92	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	190076517	190076518	+	IGR	INS	-	C	C	rs141584121	by1000genomes	TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr4:190076517_190076518insC								None (None upstream) : FRG1 (785456 downstream)																							GGCTGCAGGGAGGGGAGGCGCA	0.708													10	19	---	---	---	---					
PAPD7	11044	broad.mit.edu	37	5	6751245	6751246	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:6751245_6751246insA	uc003jdx.1	+	11	1333_1334	c.1204_1205insA	c.(1204-1206)CCAfs	p.P402fs	PAPD7_uc011cmn.1_Frame_Shift_Ins_p.P393fs|PAPD7_uc010itl.1_Frame_Shift_Ins_p.P222fs	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	402					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						CACCGCCTTGCCAATGCCCAGT	0.589													7	249	---	---	---	---					
UGT3A2	167127	broad.mit.edu	37	5	36038005	36038006	+	Frame_Shift_Ins	INS	-	G	G	rs148808619		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:36038005_36038006insG	uc003jjz.1	-	6	1281_1282	c.1188_1189insC	c.(1186-1191)GAAAACfs	p.E396fs	UGT3A2_uc011cos.1_Frame_Shift_Ins_p.E362fs|UGT3A2_uc011cot.1_Frame_Shift_Ins_p.E94fs	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	396_397	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CGGACCATGTTTTCAGGCTGGT	0.480													11	182	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	42908690	42908691	+	IGR	INS	-	TT	TT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:42908690_42908691insTT								SEPP1 (82692 upstream) : C5orf39 (130492 downstream)																							GTTCGCAGGGCTTGGGTATTTG	0.515													17	57	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	53695958	53695958	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:53695958delA								ARL15 (89555 upstream) : HSPB3 (55487 downstream)																							cgtctctactaaaaaatacaa	0.080													8	27	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	74226552	74226552	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:74226552delT								FAM169A (34764 upstream) : GCNT4 (96738 downstream)																							gcccagctaattttttgtatt	0.000													3	4	---	---	---	---					
TRIM41	90933	broad.mit.edu	37	5	180651201	180651203	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr5:180651201_180651203delGGA	uc003mne.1	+	1	896_898	c.202_204delGGA	c.(202-204)GGAdel	p.G68del	uc003mnb.1_3'UTR|TRIM41_uc003mnc.1_In_Frame_Del_p.G68del|TRIM41_uc003mnd.1_In_Frame_Del_p.G68del|TRIM41_uc003mnf.1_RNA	NM_033549	NP_291027	Q8WV44	TRI41_HUMAN	tripartite motif-containing 41 isoform 1	68	Glu-rich.					cytoplasm|nucleus	ligase activity|protein binding|zinc ion binding				0	all_cancers(89;9.17e-06)|all_epithelial(37;1.19e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ggaggaggacggagaggaggagg	0.493													7	149	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	23856770	23856771	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:23856770_23856771insG								None (None upstream) : NRSN1 (269643 downstream)																							cactccagcctggtgacagagc	0.178													26	287	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	31487453	31487454	+	IGR	INS	-	T	T	rs34451538		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:31487453_31487454insT								MICB (8555 upstream) : MCCD1 (9285 downstream)																							tggctcatgccgtaatcccagc	0.193													10	52	---	---	---	---					
C6orf106	64771	broad.mit.edu	37	6	34614574	34614575	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:34614574_34614575insT	uc003ojr.2	-	3	559_560	c.314_315insA	c.(313-315)GGGfs	p.G105fs	C6orf106_uc003ojs.2_Intron	NM_024294	NP_077270	Q9H6K1	CF106_HUMAN	chromosome 6 open reading frame 106 isoform a	105										skin(2)|ovary(1)	3						AGGCCTCTGCCCCTGAGTTCAA	0.460													9	156	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	63937665	63937666	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:63937665_63937666insG								KHDRBS2 (941565 upstream) : LGSN (48191 downstream)																							cttgctctgtcaccaggctgga	0.193													9	398	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	63937666	63937667	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:63937666_63937667insC								KHDRBS2 (941566 upstream) : LGSN (48190 downstream)																							ttgctctgtcaccaggctggag	0.188													20	386	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160131788	160131788	+	IGR	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:160131788delT								SOD2 (17435 upstream) : WTAP (16341 downstream)																							ccaccactcatactgctctga	0.100													17	525	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160131967	160131967	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:160131967delC								SOD2 (17614 upstream) : WTAP (16162 downstream)																							ataaccacctccataaccacc	0.040													9	349	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132736	160132736	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:160132736delC								SOD2 (18383 upstream) : WTAP (15393 downstream)																							ccaccactcacactgctctga	0.000													10	185	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160133017	160133017	+	IGR	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:160133017delC								SOD2 (18664 upstream) : WTAP (15112 downstream)																							ccaccactcacactgctcaga	0.050													9	251	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160133141	160133142	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:160133141_160133142insC								SOD2 (18788 upstream) : WTAP (14987 downstream)																							accaccactcagctgctcagac	0.079													7	66	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	169300678	169300680	+	IGR	DEL	GAG	-	-	rs112757745		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:169300678_169300680delGAG								SMOC2 (232007 upstream) : THBS2 (315196 downstream)																							AGGGTGAGAAGAGGAGGGAAGCA	0.517													5	9	---	---	---	---					
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	CAG	CAG	rs72320253		TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr6:170871013_170871014insCAG	uc003qxt.2	+	3	421_422	c.189_190insCAG	c.(187-192)insCAG	p.95_96insQ	TBP_uc003qxu.2_In_Frame_Ins_p.95_96insQ|TBP_uc011ehf.1_In_Frame_Ins_p.75_76insQ|TBP_uc011ehg.1_In_Frame_Ins_p.95_96insQ	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	95_96					cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcaacaacaacagcagcagca	0.183													31	95	---	---	---	---					
MAGI2	9863	broad.mit.edu	37	7	77762371	77762374	+	Frame_Shift_Del	DEL	TTGA	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:77762371_77762374delTTGA	uc003ugx.2	-	18	3289_3292	c.3035_3038delTCAA	c.(3034-3039)CTCAACfs	p.L1012fs	MAGI2_uc003ugy.2_Frame_Shift_Del_p.L998fs|MAGI2_uc010ldx.1_Frame_Shift_Del_p.L605fs	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1012_1013						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGTGGGGCTGTTGAGCTCTGCGAT	0.598													10	269	---	---	---	---					
AZGP1	563	broad.mit.edu	37	7	99569448	99569450	+	In_Frame_Del	DEL	GTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:99569448_99569450delGTC	uc003ush.2	-	2	300_302	c.256_258delGAC	c.(256-258)GACdel	p.D86del		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	86					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GAAGTTGGCTGTCCTGCTTCCAA	0.478													8	338	---	---	---	---					
MUC17	140453	broad.mit.edu	37	7	100684131	100684133	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:100684131_100684133delCTC	uc003uxp.1	+	3	9487_9489	c.9434_9436delCTC	c.(9433-9438)TCTCCT>TCT	p.P3146del	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3146	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|51.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCCCATTCATCTCCTACAACTTC	0.493													10	570	---	---	---	---					
OR2A14	135941	broad.mit.edu	37	7	143826378	143826379	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:143826378_143826379delTG	uc011kua.1	+	1	173_174	c.173_174delTG	c.(172-174)ATGfs	p.M58fs		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CACACACCCATGTACTTCTTCC	0.480													9	379	---	---	---	---					
GIMAP5	55340	broad.mit.edu	37	7	150439648	150439648	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439648delG	uc003whr.1	+	3	773	c.421delG	c.(421-423)GGGfs	p.G141fs	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	141	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTTGGGACAGGGGCCATGAG	0.582													23	323	---	---	---	---					
GIMAP5	55340	broad.mit.edu	37	7	150439795	150439795	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr7:150439795delT	uc003whr.1	+	3	920	c.568delT	c.(568-570)TGGfs	p.W190fs	GIMAP5_uc010lpu.2_Frame_Shift_Del_p.W48fs	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	190	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTTCAACAACTGGGGCTCTGT	0.597													7	346	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	54585707	54585708	+	IGR	INS	-	G	G			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:54585707_54585708insG								OPRK1 (421513 upstream) : ATP6V1H (42408 downstream)																							CACACTCCGCTGGGGGGACCAG	0.441													2	4	---	---	---	---					
ABRA	137735	broad.mit.edu	37	8	107781995	107781995	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr8:107781995delG	uc003ymm.3	-	1	478	c.424delC	c.(424-426)CAGfs	p.Q142fs		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	142					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTCTCTGGCTGCCCAGGTTCA	0.572													10	327	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	11011389	11011390	+	IGR	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:11011389_11011390insT								PTPRD (398666 upstream) : None (None downstream)																							CTTCTGGCCTCGCGGCCCCCTA	0.579													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	66333705	66333710	+	IGR	DEL	GTGGAG	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:66333705_66333710delGTGGAG								FAM74A4 (839319 upstream) : LOC442421 (162760 downstream)																							CTTCAGGGACGTGGAGGTGGAGGAGT	0.451													20	66	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	88551133	88551133	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:88551133delA								AGTPBP1 (194189 upstream) : NAA35 (4924 downstream)																							cctgggcaacaagagcaagac	0.075													7	17	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	99685055	99685056	+	IGR	INS	-	A	A			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:99685055_99685056insA								LOC441454 (12319 upstream) : FAM22G (5536 downstream)																							gactccgtctcaaaaaaaaaaa	0.178													3	4	---	---	---	---					
NUP214	8021	broad.mit.edu	37	9	134021585	134021586	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chr9:134021585_134021586delTT	uc004cag.2	+	13	1950_1951	c.1839_1840delTT	c.(1837-1842)TCTTCTfs	p.S613fs	NUP214_uc004cah.2_Frame_Shift_Del_p.S602fs|NUP214_uc004cai.2_Frame_Shift_Del_p.S42fs|NUP214_uc004caf.1_Frame_Shift_Del_p.S602fs|NUP214_uc010mzf.2_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	613_614	11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CGCCATTCTCTTCTGCCTCCAA	0.569			T	DEK|SET|ABL1	AML|T-ALL								8	731	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	12844472	12844472	+	IGR	DEL	A	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:12844472delA								PRPS2 (2130 upstream) : TLR7 (40730 downstream)																							AGCTTCCTTGAAAAAAAAAAG	0.239													7	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	52640257	52640258	+	IGR	INS	-	T	T			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52640257_52640258insT								XAGE1D (396306 upstream) : SSX8 (11727 downstream)																							AGGCTTTCATCTTTCCCACTCT	0.386													7	522	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	52853416	52853417	+	IGR	INS	-	C	C			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:52853416_52853417insC								XAGE5 (6094 upstream) : XAGE3 (38143 downstream)																							CTGAGACAGCTCTGGAGATCAG	0.426													12	124	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73047123	73047123	+	RNA	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:73047123delG	uc004ebn.2	+	1		c.35084delG			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TGCCACACATGACACACACAC	0.478													20	331	---	---	---	---					
IL13RA1	3597	broad.mit.edu	37	X	117875043	117875043	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:117875043delC	uc004eqs.2	+	2	195	c.152delC	c.(151-153)ACAfs	p.T51fs	IL13RA1_uc004eqr.1_Frame_Shift_Del_p.T51fs|IL13RA1_uc004eqt.1_Frame_Shift_Del_p.T51fs	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	51	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						GTAATATGGACATGGAATCCA	0.378													7	73	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	118920034	118920034	+	IGR	DEL	G	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:118920034delG								ANKRD58 (25870 upstream) : RPL39 (435 downstream)																							ccaacactttggggaggccga	0.119													12	101	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	139115462	139115463	+	IGR	INS	-	CTT	CTT			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:139115462_139115463insCTT								CXorf66 (67785 upstream) : SOX3 (469689 downstream)																							GAAATTTTGGCGGTGGTAACTA	0.277													7	216	---	---	---	---					
MAGEC1	9947	broad.mit.edu	37	X	140994892	140994894	+	In_Frame_Del	DEL	CCT	-	-			TCGA-DS-A1OD-01A-11D-A14W-08	TCGA-DS-A1OD-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	4d31c166-720c-4ac4-ad15-5ff99668bbb9	db7fd57e-784f-4c85-9869-211a456bc342	g.chrX:140994892_140994894delCCT	uc004fbt.2	+	4	1988_1990	c.1702_1704delCCT	c.(1702-1704)CCTdel	p.P569del	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	569							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAGAGCCCTCCTCAGGGGG	0.586										HNSCC(15;0.026)			11	523	---	---	---	---					
