Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA11P	79963	broad.mit.edu	37	4	421666	421666	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215843833	215843833	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67294448	67294451	+	Intron	DEL	AGAG	-	-	rs72245536		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35615386	35615386	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109629548	109629548	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31517849	31517850	+	Intron	INS	-	A	A	rs149748137	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31952144	31952145	+	Intron	INS	-	TCTG	TCTG	rs146689643	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223743471	223743473	+	Intron	DEL	TTC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127759768	127759768	+	Intron	DEL	T	-	-	rs55918728		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106112446	106112446	+	Intron	SNP	T	C	C	rs116126848	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107262069	107262069	+	Intron	SNP	T	C	C	rs78650687	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24326255	24326255	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS10	81794	broad.mit.edu	37	19	8656993	8656994	+	Intron	INS	-	G	G	rs11882422	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25131485	25131485	+	Intron	DEL	A	-	-	rs67363228		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADIPOR1	51094	broad.mit.edu	37	1	202917925	202917925	+	Intron	DEL	T	-	-	rs112598947		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26620544	26620544	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26641508	26641508	+	Intron	DEL	A	-	-	rs72405356		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88016956	88016957	+	Intron	INS	-	A	A	rs146564534	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49020862	49020862	+	Intron	DEL	T	-	-	rs137883446		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGR3	155465	broad.mit.edu	37	7	16901524	16901524	+	Intron	DEL	A	-	-	rs71551762		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35013906	35013906	+	Intron	DEL	G	-	-	rs79432192		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHRR	57491	broad.mit.edu	37	5	428103	428103	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	85933807	85933808	+	Intron	INS	-	A	A	rs138374485	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105191446	105191446	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG14	199857	broad.mit.edu	37	1	95538226	95538226	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG8	79053	broad.mit.edu	37	11	77833913	77833913	+	Intron	DEL	A	-	-	rs34360246		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2A	279	broad.mit.edu	37	1	104159888	104159888	+	5'Flank	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125629847	125629848	+	Intron	DEL	AC	-	-	rs140529823		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	100289204	100289205	+	Intron	INS	-	GT	GT	rs112269284	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5750123	5750123	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47059861	47059861	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36630695	36630696	+	Intron	DEL	AG	-	-	rs145058108		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40997114	40997115	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26824974	26824974	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144425850	144425850	+	Intron	DEL	T	-	-	rs112282637		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP1	392	broad.mit.edu	37	11	46702019	46702019	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86531706	86531706	+	Intron	DEL	C	-	-	rs67553148		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142540040	142540041	+	Intron	INS	-	T	T	rs141312921	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131721957	131721957	+	Intron	DEL	C	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58832185	58832186	+	Intron	INS	-	T	T	rs71448949		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131104252	131104252	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB11	140456	broad.mit.edu	37	X	15315613	15315613	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119367335	119367336	+	Intron	DEL	AC	-	-	rs7874884	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119909741	119909744	+	Intron	DEL	CACC	-	-	rs58379572		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31241861	31241862	+	Intron	INS	-	AA	AA	rs146967011	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10683670	10683677	+	Intron	DEL	CATCCACC	-	-	rs111581747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN3	4287	broad.mit.edu	37	14	92537354	92537356	+	In_Frame_Del	DEL	CCT	-	-	rs12895357	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT1	2683	broad.mit.edu	37	9	33135908	33135909	+	Intron	DEL	TA	-	-	rs34931533		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT4	8702	broad.mit.edu	37	3	118942545	118942545	+	Intron	DEL	C	-	-	rs78977010		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11026758	11026758	+	3'UTR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11037063	11037063	+	Intron	SNP	G	T	T	rs79808856		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11046041	11046041	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11057675	11057675	+	Intron	DEL	T	-	-	rs113590499		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11061894	11061894	+	Intron	DEL	G	-	-	rs56157850		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11064649	11064649	+	Intron	SNP	G	C	C	rs76731709		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11078574	11078574	+	Intron	SNP	T	A	A	rs76805569		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66291184	66291184	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33606349	33606349	+	Intron	DEL	A	-	-	rs74366097		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L13	23786	broad.mit.edu	37	22	18166100	18166100	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	113005743	113005744	+	3'UTR	INS	-	T	T	rs146459508	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf129	142827	broad.mit.edu	37	10	96970635	96970635	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf68	79741	broad.mit.edu	37	10	32992009	32992009	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf54	121273	broad.mit.edu	37	12	48876635	48876635	+	5'Flank	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf37	145407	broad.mit.edu	37	14	58727859	58727860	+	Intron	INS	-	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49430501	49430501	+	Missense_Mutation	SNP	C	T	T	rs140378939	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf66	256957	broad.mit.edu	37	17	34193620	34193620	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9495457	9495457	+	5'UTR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf94	128710	broad.mit.edu	37	20	10468721	10468722	+	Intron	DEL	TC	-	-	rs66559463		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf59	56683	broad.mit.edu	37	21	33979852	33979852	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37475310	37475310	+	Silent	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192587126	192587133	+	Intron	DEL	GGAAGGGA	-	-	rs13098415		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPB	725	broad.mit.edu	37	1	207262997	207262997	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37173990	37173990	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37176144	37176144	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf134	79969	broad.mit.edu	37	6	30608890	30608893	+	Intron	DEL	ACAT	-	-	rs3130038		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf195	154386	broad.mit.edu	37	6	2632703	2632703	+	Intron	DEL	G	-	-	rs61324601		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf30	115416	broad.mit.edu	37	7	23347398	23347398	+	Intron	DEL	C	-	-	rs112007740		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2648865	2648865	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	37075231	37075246	+	Intron	DEL	CTTCCTTCCTTCCTTT	-	-	rs59008064		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71416027	71416028	+	Intron	INS	-	AAGGAAGGAAGGAAAG	AAGGAAGGAAGGAAAG	rs67540929		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12823535	12823535	+	Intron	DEL	T	-	-	rs3837320		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110714603	110714603	+	Intron	DEL	C	-	-	rs67546812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7163371	7163374	+	Intron	DEL	GTCT	-	-	rs142544001		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67692710	67692710	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T2	9139	broad.mit.edu	37	20	32161960	32161960	+	5'UTR	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CC2D2A	57545	broad.mit.edu	37	4	15482765	15482765	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC114	93233	broad.mit.edu	37	19	48800927	48800927	+	Splice_Site	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33457534	33457534	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC149	91050	broad.mit.edu	37	4	24840678	24840685	+	Intron	DEL	ACACACAG	-	-	rs71187190		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48961836	48961836	+	5'Flank	SNP	G	A	A	rs148557317	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21880572	21880572	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22202275	22202278	+	Intron	DEL	CCTC	-	-	rs72243697		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73162502	73162503	+	Intron	INS	-	CA	CA	rs150376431	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31317548	31317548	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK11B	984	broad.mit.edu	37	1	1588717	1588717	+	Intron	SNP	G	A	A	rs61774959	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK15	65061	broad.mit.edu	37	2	202698423	202698425	+	Intron	DEL	TCT	-	-	rs66588345		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	20675030	20675031	+	Intron	DEL	AT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196670605	196670605	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132660978	132660979	+	Intron	INS	-	CT	CT	rs147435059	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53190555	53190555	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIDEC	63924	broad.mit.edu	37	3	10059657	10059657	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA2	9635	broad.mit.edu	37	1	86898259	86898259	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19222082	19222082	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	7001250	7001259	+	Intron	DEL	CACACACACC	-	-	rs57039812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88218362	88218362	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2334812	2334813	+	Intron	INS	-	TT	TT	rs143931961	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	124799031	124799031	+	Intron	DEL	G	-	-	rs35052286		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105832790	105832790	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70637878	70637878	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70840125	70840125	+	Intron	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139606336	139606336	+	Silent	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139818070	139818073	+	Intron	DEL	TTTT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10108929	10108930	+	Intron	INS	-	AT	AT	rs146616197	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX16	51241	broad.mit.edu	37	14	70806612	70806614	+	Intron	DEL	CTT	-	-	rs34869883		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX18	285521	broad.mit.edu	37	4	73930892	73930893	+	Intron	INS	-	G	G	rs79402424		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28776721	28776721	+	Silent	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPM	1368	broad.mit.edu	37	12	69279514	69279514	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE8	144402	broad.mit.edu	37	12	39226863	39226863	+	Intron	DEL	T	-	-	rs138057197		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRBN	51185	broad.mit.edu	37	3	3194092	3194092	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1325485	1325485	+	RNA	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROT	54677	broad.mit.edu	37	7	86990993	86990994	+	Intron	INS	-	G	G	rs149947132	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113243835	113243835	+	Silent	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113516209	113516209	+	Intron	DEL	G	-	-	rs111461827		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114235990	114235991	+	Intron	DEL	TA	-	-	rs5894132		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80686890	80686890	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11163045	11163046	+	Intron	DEL	AT	-	-	rs149920242		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11397125	11397125	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143998597	143998597	+	Silent	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187118275	187118277	+	In_Frame_Del	DEL	ATC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27945074	27945074	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112172	59112172	+	Silent	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112495	59112495	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41980940	41980941	+	5'Flank	INS	-	AA	AA	rs149526136	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24185953	24185956	+	Intron	DEL	ACAT	-	-	rs57262857		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155226048	155226048	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155341386	155341387	+	Intron	INS	-	AGACAGAC	AGACAGAC	rs71600327		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1B	196513	broad.mit.edu	37	12	2064553	2064553	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	86004839	86004840	+	Intron	INS	-	C	C	rs141586747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134680353	134680353	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB124	245937	broad.mit.edu	37	20	30053333	30053333	+	Silent	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126531831	126531831	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4C	55667	broad.mit.edu	37	9	19350853	19350853	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIRC3	729582	broad.mit.edu	37	2	218550870	218550871	+	Intron	DEL	AT	-	-	rs56996717		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX6AS	285987	broad.mit.edu	37	7	96606809	96606810	+	Intron	INS	-	CA	CA	rs150866503	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51749698	51749698	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38816444	38816444	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11805971	11805971	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6705872	6705873	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132175372	132175372	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65830293	65830294	+	Intron	INS	-	TT	TT			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1L	10059	broad.mit.edu	37	12	32860244	32860244	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1L	10059	broad.mit.edu	37	12	32860353	32860353	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169140992	169140992	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64020321	64020321	+	Intron	DEL	C	-	-	rs7310030	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41453251	41453251	+	Intron	DEL	T	-	-	rs11366586		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSEL	92126	broad.mit.edu	37	18	65180855	65180855	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116622339	116622339	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56736076	56736076	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	334412	334412	+	Intron	DEL	A	-	-	rs143312900		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57671929	57671929	+	Intron	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95692442	95692445	+	Intron	DEL	TGTA	-	-	rs112885345		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38759001	38759002	+	Intron	INS	-	G	G	rs141216442	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68840629	68840629	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68840709	68840709	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3775525	3775526	+	Intron	DEL	GC	-	-	rs112902196		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN1	54583	broad.mit.edu	37	1	231503297	231503297	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELSPBP1	64100	broad.mit.edu	37	19	48519714	48519729	+	Intron	DEL	TTTCTTTCCTTCTTTC	-	-	rs112170164	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27303000	27303000	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14857202	14857203	+	Intron	INS	-	C	C	rs146686953	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX2	2018	broad.mit.edu	37	10	119303022	119303022	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22924648	22924648	+	Silent	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPT1	85465	broad.mit.edu	37	2	26596288	26596288	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56145260	56145262	+	Intron	DEL	ACA	-	-	rs146650889		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA2	2139	broad.mit.edu	37	20	45731538	45731539	+	Intron	INS	-	ATAT	ATAT	rs139181262	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57361950	57361950	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107A	11170	broad.mit.edu	37	3	58568199	58568199	+	Intron	DEL	T	-	-	rs10716599		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM126A	84668	broad.mit.edu	37	7	22980929	22980930	+	3'UTR	INS	-	AC	AC	rs35708583		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A1	729830	broad.mit.edu	37	4	152425757	152425761	+	Intron	DEL	ATGTC	-	-	rs67149751		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM178B	51252	broad.mit.edu	37	2	97630085	97630085	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30805809	30805810	+	Intron	DEL	TC	-	-	rs146676127	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	92284506	92284507	+	Intron	DEL	TT	-	-	rs72406328		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156592666	156592666	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156593331	156593331	+	5'Flank	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102713945	102713947	+	Intron	DEL	ATA	-	-	rs10534393		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL1	115350	broad.mit.edu	37	1	157789087	157789088	+	Intron	INS	-	A	A	rs145006489	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125083737	125083737	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHIT	2272	broad.mit.edu	37	3	60866411	60866413	+	Intron	DEL	AAC	-	-	rs148135383		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67264062	67264062	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1L	11259	broad.mit.edu	37	3	99709075	99709077	+	Intron	DEL	GAG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33014332	33014332	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142469191	142469191	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128481584	128481584	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486640	128486640	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153415244	153415245	+	Intron	INS	-	C	C	rs142812536	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29635890	29635890	+	Intron	DEL	A	-	-	rs139182760		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29646794	29646796	+	Intron	DEL	AAA	-	-	rs112811287		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29649883	29649887	+	Intron	DEL	CTTAT	-	-	rs139376591		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29653635	29653635	+	3'UTR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190871390	190871390	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13712593	13712594	+	Intron	DEL	AC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	14494456	14494456	+	Intron	DEL	C	-	-	rs34064874		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12725070	12725070	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132561628	132561628	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G6PC	2538	broad.mit.edu	37	17	41061185	41061185	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29589092	29589092	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47034104	47034104	+	Intron	DEL	G	-	-	rs67779259		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALK2	2585	broad.mit.edu	37	15	49574421	49574421	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173530780	173530780	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117823906	117823906	+	3'UTR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT8D1	55830	broad.mit.edu	37	3	52731827	52731828	+	Frame_Shift_Ins	INS	-	C	C	rs138720022	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167767247	167767248	+	Intron	INS	-	GAG	GAG	rs143367173	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAT2	150763	broad.mit.edu	37	2	96697674	96697674	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100330087	100330088	+	Intron	INS	-	TTTCCTTC	TTTCCTTC	rs71981038		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94411994	94411994	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94570006	94570007	+	Intron	INS	-	T	T	rs142108123	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	10168361	10168361	+	Intron	DEL	A	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9915985	9915985	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126646351	126646353	+	Intron	DEL	TCC	-	-	rs80337709		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145008944	145008944	+	Intron	SNP	G	A	A	rs115291273	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5559122	5559123	+	Intron	INS	-	GG	GG	rs150877031	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30686798	30686798	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR1	3061	broad.mit.edu	37	1	32086435	32086435	+	Intron	SNP	G	A	A	rs74679076		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC8	55869	broad.mit.edu	37	X	71708768	71708768	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18296740	18296741	+	Intron	DEL	TA	-	-	rs150400645	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18462364	18462365	+	Intron	DEL	CG	-	-	rs10524785		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18818554	18818554	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR4	399671	broad.mit.edu	37	14	73985674	73985674	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37234479	37234480	+	Intron	DEL	AC	-	-	rs5830448		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43179412	43179413	+	Intron	INS	-	G	G	rs149877578	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63901228	63901228	+	3'UTR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91813032	91813032	+	Silent	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210570901	210570901	+	Intron	DEL	T	-	-	rs72083204		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123122	100123123	+	Intron	DEL	AG	-	-	rs72341366		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42104304	42104304	+	Intron	DEL	A	-	-	rs5773747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29798236	29798237	+	Intron	DNP	GG	TT	TT			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221054495	221054495	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HM13	81502	broad.mit.edu	37	20	30142485	30142485	+	Intron	DEL	A	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMBS	3145	broad.mit.edu	37	11	118958929	118958929	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN4	10473	broad.mit.edu	37	6	26545565	26545565	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA1	3198	broad.mit.edu	37	7	27134054	27134054	+	3'UTR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186393097	186393098	+	Intron	INS	-	GA	GA	rs59016663		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25869220	25869221	+	Intron	INS	-	CTTC	CTTC	rs72453395		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25884642	25884645	+	Intron	DEL	TCCT	-	-	rs56296232	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27668871	27668871	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27669295	27669295	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117137539	117137540	+	Intron	INS	-	G	G	rs143026687		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111665947	111665947	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12A	3592	broad.mit.edu	37	3	159711626	159711626	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RD	54756	broad.mit.edu	37	3	57131837	57131837	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102956715	102956715	+	Missense_Mutation	SNP	C	A	A	rs141010284	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31	386653	broad.mit.edu	37	12	122658429	122658429	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INMT	11185	broad.mit.edu	37	7	30759327	30759330	+	Intron	DEL	CATC	-	-	rs10259272		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41371789	41371789	+	Intron	DEL	C	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO11	51194	broad.mit.edu	37	5	61772530	61772530	+	Missense_Mutation	SNP	A	G	G	rs35107530	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGM	345611	broad.mit.edu	37	5	150268209	150268210	+	Intron	DEL	TG	-	-	rs149992340		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA3	3675	broad.mit.edu	37	17	48165215	48165215	+	Silent	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182339856	182339856	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31282442	31282442	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102220122	102220122	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65337198	65337198	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64973556	64973556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73579109	73579110	+	Intron	INS	-	T	T	rs143218885	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169990637	169990639	+	Intron	DEL	TTT	-	-	rs141440921		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ10	3766	broad.mit.edu	37	1	160013060	160013061	+	Intron	DEL	AA	-	-	rs5778148		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB4	27345	broad.mit.edu	37	12	70778131	70778132	+	Intron	DEL	TG	-	-	rs146983123		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154686656	154686658	+	Intron	DEL	GTG	-	-	rs138099065		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44281477	44281478	+	Intron	DEL	GG	-	-	rs72282703		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86716548	86716548	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55962393	55962393	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73494453	73494453	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8785010	8785011	+	Intron	INS	-	T	T	rs142102394	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123267610	123267610	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57131567	57131568	+	Intron	DEL	GG	-	-	rs142231650	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1919	91749	broad.mit.edu	37	6	111583373	111583373	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF7	8609	broad.mit.edu	37	2	207945807	207945808	+	3'UTR	INS	-	TG	TG	rs59847589		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL32	114792	broad.mit.edu	37	6	97587157	97587157	+	Nonstop_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51327601	51327601	+	5'Flank	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122149407	122149414	+	Intron	DEL	TGTGTGTG	-	-	rs10592927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52797715	52797715	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7026049	7026049	+	Silent	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	34109964	34109968	+	Intron	DEL	TAACG	-	-	rs71686476		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30723963	30723964	+	Intron	DEL	TA	-	-	rs67154045		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169683562	169683562	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202245609	202245609	+	Missense_Mutation	SNP	C	T	T	rs117583891	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41672724	41672724	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105474353	105474353	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPE	3991	broad.mit.edu	37	19	42910261	42910261	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150786	150786	broad.mit.edu	37	2	132120587	132120588	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC388692	388692	broad.mit.edu	37	1	149287234	149287234	+	RNA	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646762	646762	broad.mit.edu	37	7	29705846	29705847	+	Intron	DEL	TC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	37248431	37248454	+	Intron	DEL	AGGGAGGAAGGAAGGAAGGAAGGA	-	-	rs11270312	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728264	728264	broad.mit.edu	37	5	148794630	148794630	+	Intron	DEL	C	-	-	rs76865478		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT3	10162	broad.mit.edu	37	12	7090771	7090771	+	Silent	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771802	99771802	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42218410	42218410	+	Intron	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141709575	141709575	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806744	141806744	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC14B	389257	broad.mit.edu	37	5	194830	194830	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77035949	77035950	+	Intron	INS	-	T	T	rs145328965	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM1	27257	broad.mit.edu	37	8	38027379	38027379	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33328694	33328695	+	Intron	DEL	GA	-	-	rs71871697		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78470469	78470470	+	Intron	INS	-	A	A	rs145221257	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI3	260425	broad.mit.edu	37	1	114006024	114006025	+	Intron	INS	-	A	A	rs142111604	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML3	55534	broad.mit.edu	37	4	140963797	140963797	+	Intron	DEL	A	-	-	rs66893477		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	118003273	118003273	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139997282	139997285	+	Intron	DEL	ACAC	-	-	rs71835567		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19431260	19431260	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K8	1326	broad.mit.edu	37	10	30748179	30748179	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102447735	102447735	+	Intron	DEL	T	-	-	rs112415164		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45953916	45953916	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3835496	3835496	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20212354	20212354	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME3	10873	broad.mit.edu	37	11	86245975	86245976	+	Intron	INS	-	C	C	rs149727562	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECR	51102	broad.mit.edu	37	1	29520747	29520747	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116412043	116412043	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128869054	128869055	+	Intron	DEL	CT	-	-	rs11942770	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR633	693218	broad.mit.edu	37	17	61021606	61021606	+	RNA	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49420852	49420852	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36872744	36872745	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33838824	33838824	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17083962	17083962	+	3'UTR	SNP	C	T	T	rs151057133	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL35	51318	broad.mit.edu	37	2	86437881	86437881	+	3'UTR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55541352	55541355	+	Intron	DEL	GTGT	-	-	rs71750982		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64951850	64951865	+	Intron	DEL	TATCTCAGATCTCTTT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3229296	3229296	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108205512	108205512	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10451212	10451213	+	Frame_Shift_Ins	INS	-	C	C	rs141217425	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123401893	123401897	+	Intron	DEL	GGCTG	-	-	rs112444786		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26185048	26185072	+	Intron	DEL	TCTTCCTCCTCCTTCTTCTTCCTCC	-	-	rs7511385		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26242334	26242334	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	2201651	2201652	+	Intron	INS	-	CA	CA	rs141470375	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23365764	23365764	+	Intron	DEL	C	-	-	rs34658304		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34162954	34162955	+	Intron	INS	-	TC	TC	rs141705432		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15519843	15519843	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145248644	145248644	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145269495	145269495	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145286466	145286466	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144828309	144828309	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145070205	145070205	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145199961	145199961	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124907081	124907092	+	In_Frame_Del	DEL	TTCTTGGGATGC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG1	10397	broad.mit.edu	37	8	134268931	134268931	+	Intron	SNP	G	A	A	rs145676204	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161183976	161183976	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD9	4739	broad.mit.edu	37	6	11325003	11325004	+	Intron	INS	-	C	C	rs141817571	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29587415	29587415	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36381172	36381172	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL2	79815	broad.mit.edu	37	8	99296647	99296648	+	Intron	DEL	CA	-	-	rs67700958		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57074370	57074370	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175812216	175812216	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33813074	33813075	+	Intron	INS	-	T	T	rs143416806	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34698106	34698106	+	Missense_Mutation	SNP	G	A	A	rs145130538		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200017162	200017162	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200022695	200022696	+	Intron	INS	-	CG	CG			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32011082	32011082	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131355947	131355947	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17625940	17625940	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL1	9818	broad.mit.edu	37	13	25883359	25883359	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103572984	103572992	+	In_Frame_Del	DEL	TGCAGCCCC	-	-	rs72175040	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102312320	102312320	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	133010658	133010659	+	Intron	INS	-	GAA	GAA	rs138549636	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H3	26532	broad.mit.edu	37	19	15852739	15852739	+	Silent	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202307	248202307	+	Silent	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22333592	22333594	+	Intron	DEL	ATG	-	-	rs111877525		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22352096	22352096	+	Intron	SNP	T	C	C	rs143554222	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K1	390036	broad.mit.edu	37	11	4510300	4510300	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587675	55587675	+	Silent	SNP	C	T	T	rs141670558	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6A2	8590	broad.mit.edu	37	11	6816142	6816142	+	Silent	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14991932	14991932	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52850896	52850896	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24846310	24846310	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21725621	21725622	+	Intron	INS	-	CTTC	CTTC	rs34598445		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146073745	146073745	+	Nonsense_Mutation	SNP	G	A	A	rs138980387		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXNAD1	92106	broad.mit.edu	37	3	16343199	16343199	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY14	9934	broad.mit.edu	37	3	150996153	150996154	+	Translation_Start_Site	INS	-	A	A	rs139055887	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE2B	389860	broad.mit.edu	37	X	55102946	55102946	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9600927	9600927	+	Intron	DEL	G	-	-	rs151130831		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112581971	112581972	+	Intron	INS	-	TG	TG	rs144647153	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAM	5066	broad.mit.edu	37	5	102360820	102360820	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAOX	196743	broad.mit.edu	37	10	135202325	135202359	+	Intron	DEL	GTCATCCCGGGGCTCTCTTTCTCCATGCAGGTCTG	-	-	rs144417516	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56457445	56457446	+	Intron	INS	-	AGGGAGGAAGGG	AGGGAGGAAGGG	rs138038040	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250227	140250227	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17818042	17818042	+	Intron	DEL	C	-	-	rs11984528		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDAP1	11333	broad.mit.edu	37	7	98994205	98994205	+	3'UTR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD6IP	10015	broad.mit.edu	37	3	33887132	33887132	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1B	5153	broad.mit.edu	37	12	54967640	54967641	+	Intron	INS	-	GA	GA	rs142403478	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	32271568	32271569	+	Intron	DEL	TA	-	-	rs112437285		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145028445	145028445	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54384959	54384960	+	Intron	INS	-	G	G	rs139913013	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95543799	95543799	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33315189	33315190	+	Intron	INS	-	T	T	rs2320470		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41967451	41967451	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22662357	22662357	+	Intron	SNP	C	T	T	rs140831296	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEBP4	157310	broad.mit.edu	37	8	22679497	22679498	+	Intron	INS	-	A	A	rs113380878		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP2	114770	broad.mit.edu	37	19	15587253	15587253	+	Silent	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5P2	595135	broad.mit.edu	37	9	69128391	69128394	+	Intron	DEL	AAGA	-	-	rs60948557		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHC3	80012	broad.mit.edu	37	3	169829102	169829109	+	Intron	DEL	GAAGGAAC	-	-	rs11280273	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	229933858	229933861	+	Intron	DEL	TTTG	-	-	rs3083812		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNC1	26207	broad.mit.edu	37	17	65688658	65688658	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51790253	51790254	+	Intron	INS	-	TG	TG	rs1160482		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159432314	159432314	+	Intron	DEL	C	-	-	rs3755410	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8832360	8832360	+	Intron	DEL	T	-	-	rs11479187		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198968508	198968508	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93131207	93131207	+	5'UTR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLRG1	5356	broad.mit.edu	37	4	155463960	155463960	+	Intron	DEL	T	-	-	rs11303940		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131956190	131956191	+	Intron	INS	-	A	A	rs140262314		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119372844	119372845	+	Intron	INS	-	G	G	rs138591919	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160635668	160635669	+	Intron	INS	-	TTG	TTG	rs145483333		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146085777	146085777	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146085784	146085784	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM7	11105	broad.mit.edu	37	16	90124775	90124775	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57385850	57385851	+	Intron	INS	-	TCCTGA	TCCTGA	rs139159987		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57391940	57391941	+	Intron	INS	-	T	T	rs139175265		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398118	57398119	+	Intron	INS	-	T	T	rs147643173		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57404370	57404371	+	Intron	INS	-	A	A	rs139203387		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57465739	57465739	+	Intron	DEL	G	-	-	rs67106455		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57511818	57511818	+	Intron	DEL	G	-	-	rs11310474		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT1	3276	broad.mit.edu	37	19	50191362	50191363	+	Intron	INS	-	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982045	240982045	+	Missense_Mutation	SNP	G	C	C	rs142996407	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43357785	43357785	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43359589	43359589	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME3	10197	broad.mit.edu	37	17	40986625	40986625	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1097421	1097421	+	Intron	DEL	A	-	-	rs75062426		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD1	139411	broad.mit.edu	37	X	23412262	23412263	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48130814	48130814	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141856744	141856744	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214638116	214638116	+	Silent	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18763946	18763946	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRE	5791	broad.mit.edu	37	10	129865464	129865465	+	Intron	DEL	AT	-	-	rs57935068		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62005351	62005351	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48180646	48180647	+	Intron	INS	-	GG	GG	rs145240834	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68568162	68568162	+	Intron	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALA	5898	broad.mit.edu	37	7	39726463	39726463	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37182420	37182421	+	Intron	INS	-	AA	AA	rs11472819		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22305301	22305301	+	Intron	DEL	A	-	-	rs5882839		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25326956	25326956	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM25	58517	broad.mit.edu	37	14	73563904	73563905	+	Intron	INS	-	T	T	rs67768323		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253388	79253388	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86572362	86572362	+	3'UTR	SNP	C	T	T	rs2575410		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86572367	86572367	+	3'UTR	SNP	C	A	A	rs4740090		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86781880	86781880	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86781909	86781909	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGMB	285704	broad.mit.edu	37	5	98128864	98128864	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130967288	130967288	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104536573	104536586	+	Intron	DEL	CATTTGAAATGAAG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105022213	105022216	+	Intron	DEL	GATA	-	-	rs113548968		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144A	9781	broad.mit.edu	37	2	7137027	7137027	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158630641	158630641	+	5'UTR	DEL	C	-	-	rs74841177		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	89894308	89894309	+	Intron	INS	-	T	T	rs74916537	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94457907	94457914	+	Intron	DEL	GTGTGAGT	-	-	rs28627308		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP3	79657	broad.mit.edu	37	12	48080316	48080317	+	Intron	INS	-	ACACAT	ACACAT			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RWDD3	25950	broad.mit.edu	37	1	95712434	95712434	+	3'UTR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165372175	165372176	+	Intron	DEL	CT	-	-	rs67617018		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237954780	237954780	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34145914	34145914	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB3A2	117156	broad.mit.edu	37	5	147256971	147256973	+	5'Flank	DEL	AAA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38991881	38991881	+	5'UTR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167163587	167163587	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24D	9871	broad.mit.edu	37	4	119718977	119718977	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT11	55752	broad.mit.edu	37	4	77914212	77914214	+	Intron	DEL	TAT	-	-	rs3070493		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA12	145264	broad.mit.edu	37	14	94960014	94960014	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29884929	29884930	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS3	6428	broad.mit.edu	37	6	36564705	36564705	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL2	6456	broad.mit.edu	37	9	17786356	17786356	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GLB2	56904	broad.mit.edu	37	9	131777205	131777205	+	Intron	SNP	G	A	A	rs146144084	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51166539	51166540	+	Intron	INS	-	AG	AG	rs138730639	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838300	100838300	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT1	23411	broad.mit.edu	37	10	69651417	69651417	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127485706	127485706	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19335259	19335268	+	Intron	DEL	TGTGTGTGTA	-	-	rs148697764	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19677646	19677662	+	Intron	DEL	GGAGGGAGAAGAGAAAG	-	-	rs33986665		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A6	80024	broad.mit.edu	37	12	113748005	113748006	+	Intron	INS	-	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58016722	58016722	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128329559	128329559	+	Intron	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150846882	150846882	+	Intron	DEL	C	-	-	rs61191955	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47182210	47182210	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76061886	76061887	+	Intron	DEL	TG	-	-	rs71745575		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48690581	48690581	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO4C1	353189	broad.mit.edu	37	5	101606534	101606534	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86369977	86369978	+	In_Frame_Ins	INS	-	GCA	GCA			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF2	64750	broad.mit.edu	37	17	62602762	62602763	+	Intron	INS	-	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96964847	96964847	+	Intron	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1285286	1285286	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX27	81609	broad.mit.edu	37	1	151664882	151664883	+	Intron	INS	-	T	T	rs71740107		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX30	401548	broad.mit.edu	37	9	115620036	115620039	+	Intron	DEL	GCAT	-	-	rs144243927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS3	10174	broad.mit.edu	37	8	22415581	22415581	+	Intron	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS3	10174	broad.mit.edu	37	8	22428698	22428698	+	Silent	SNP	C	T	T	rs111727569		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7403584	7403585	+	Intron	INS	-	T	T	rs146713776	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16371303	16371303	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16371305	16371305	+	Intron	SNP	G	A	A	rs145904383	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151053571	151053574	+	Intron	DEL	TTGT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172674647	172674647	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA4	132851	broad.mit.edu	37	4	177113981	177113981	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28990692	28990693	+	Intron	INS	-	G	G	rs139343178	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR3	6707	broad.mit.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	-	-	rs72704847	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131374230	131374230	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9132090	9132091	+	Intron	INS	-	A	A	rs112456502		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119560050	119560057	+	Intron	DEL	AGGAAGGC	-	-	rs71902941		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL1	6480	broad.mit.edu	37	3	186753726	186753727	+	Intron	INS	-	A	A	rs138082077	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104123886	104123886	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP2	55620	broad.mit.edu	37	19	4333894	4333894	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33755407	33755408	+	Intron	DEL	AT	-	-	rs144824984		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56750369	56750369	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRADA	92335	broad.mit.edu	37	17	61790607	61790607	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRADB	55437	broad.mit.edu	37	2	202342454	202342454	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRADB	55437	broad.mit.edu	37	2	202342907	202342907	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73114762	73114762	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46355635	46355635	+	Silent	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64685108	64685108	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPR	132204	broad.mit.edu	37	3	63340237	63340237	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33579267	33579267	+	Silent	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR2	9287	broad.mit.edu	37	6	132939196	132939196	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75347863	75347863	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	159992561	159992562	+	Intron	DEL	GC	-	-	rs35231270		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61134449	61134449	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115985847	115985847	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD1	7003	broad.mit.edu	37	11	12886261	12886261	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET3	200424	broad.mit.edu	37	2	74320583	74320583	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463623	104463623	+	3'UTR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30705531	30705531	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TF	7018	broad.mit.edu	37	3	133428411	133428411	+	5'UTR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171850178	171850179	+	3'UTR	INS	-	AA	AA	rs144505944		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM104	54868	broad.mit.edu	37	17	72832070	72832070	+	Silent	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75970705	75970705	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM86A	144110	broad.mit.edu	37	11	18722635	18722635	+	Silent	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM98	26022	broad.mit.edu	37	17	31256250	31256251	+	Intron	DEL	CA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68930200	68930200	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29736521	29736521	+	Intron	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101264493	101264493	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59988579	59988579	+	Intron	DEL	G	-	-	rs112859401		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189448840	189448840	+	Intron	DEL	A	-	-	rs145755961		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18047940	18047941	+	Intron	INS	-	A	A	rs66864134		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10972723	10972723	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141347009	141347010	+	Intron	INS	-	GTAA	GTAA	rs148454702	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123957844	123957844	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30128213	30128213	+	Silent	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14348960	14348961	+	Intron	INS	-	TG	TG	rs145514589	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72942274	72942274	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49714608	49714608	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	52032362	52032363	+	Intron	DEL	CA	-	-	rs73625474		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAX-DISC1	100303453	broad.mit.edu	37	1	231706521	231706521	+	Intron	DEL	G	-	-	rs61416909		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71732841	71732842	+	Intron	INS	-	C	C	rs144408075	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231048321	231048321	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231048323	231048323	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC12	51060	broad.mit.edu	37	1	52501485	52501485	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37887511	37887516	+	5'Flank	DEL	GAAGAA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66549512	66549513	+	Intron	INS	-	T	T	rs11445938		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAC1	10422	broad.mit.edu	37	9	138830180	138830180	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103297719	103297719	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP1	7350	broad.mit.edu	37	4	141484372	141484372	+	Intron	DEL	A	-	-	rs111460010		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A4	54657	broad.mit.edu	37	2	234628292	234628292	+	Missense_Mutation	SNP	A	C	C	rs147342917	byFrequency	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF3B	65109	broad.mit.edu	37	X	118975572	118975572	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158979866	158979867	+	Intron	INS	-	T	T	rs150371062	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49154844	49154844	+	Intron	SNP	C	T	T	rs138056152	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	103681	103682	+	IGR	INS	-	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109581595	109581595	+	IGR	DEL	A	-	-	rs112686460		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118049152	118049153	+	IGR	DEL	TG	-	-	rs12768041	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	123450156	123450156	+	IGR	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	129351051	129351052	+	IGR	INS	-	A	A	rs141748490	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130695630	130695630	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	130795725	130795726	+	IGR	INS	-	A	A	rs142530493	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131253271	131253271	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19414293	19414293	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19414308	19414311	+	IGR	DEL	TTCC	-	-	rs10450313	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	27879646	27879646	+	IGR	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37725651	37725652	+	IGR	INS	-	T	T	rs11390202		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42652342	42652342	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42652976	42652976	+	IGR	SNP	A	G	G	rs138462500	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43230079	43230079	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52446702	52446703	+	IGR	INS	-	T	T	rs138711130		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	5390264	5390265	+	IGR	INS	-	A	A	rs149803181	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60664733	60664733	+	IGR	DEL	A	-	-	rs112899407		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	64616113	64616113	+	IGR	DEL	A	-	-	rs35675360		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79898965	79898988	+	IGR	DEL	TGTGCATGTGGCTGCATATGTATG	-	-	rs2434127		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80457265	80457266	+	IGR	INS	-	T	T	rs151252609	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	81240226	81240227	+	IGR	DEL	CG	-	-	rs140040814		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	82204385	82204385	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86607374	86607375	+	IGR	DEL	AT	-	-	rs143748749		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86813971	86813971	+	IGR	DEL	A	-	-	rs10715486		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	11083030	11083031	+	IGR	INS	-	TCTT	TCTT	rs142456839	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	114855740	114855741	+	IGR	DEL	AC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	116026377	116026391	+	IGR	DEL	GAGGAGGAAGAAGAG	-	-	rs61897722		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121651761	121651768	+	IGR	DEL	TCCTTCCC	-	-	rs72137332	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13061509	13061510	+	IGR	DEL	GA	-	-	rs71455811		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131034308	131034309	+	IGR	INS	-	AG	AG	rs144574801	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131088931	131088934	+	IGR	DEL	AGAG	-	-	rs141767776		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	131219868	131219869	+	IGR	INS	-	CC	CC	rs4300402	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13265705	13265705	+	IGR	DEL	T	-	-	rs66818013		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	1832661	1832662	+	IGR	INS	-	T	T	rs145328989	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4730872	4730872	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51591263	51591263	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59066135	59066136	+	IGR	INS	-	GGAAGGAA	GGAAGGAA	rs36130299		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59066156	59066156	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	88010587	88010587	+	IGR	DEL	T	-	-	rs67640157		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94663890	94663895	+	IGR	DEL	GTGTGC	-	-	rs71833558	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	95110003	95110006	+	IGR	DEL	CCTC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97654577	97654577	+	IGR	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	103367247	103367248	+	IGR	INS	-	TTCT	TTCT	rs147902551	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	113936179	113936181	+	IGR	DEL	AGC	-	-	rs35751716		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115736712	115736712	+	IGR	DEL	T	-	-	rs34033433		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	125107953	125107953	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	125107967	125107967	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127754311	127754312	+	IGR	INS	-	CG	CG	rs146390714	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128181729	128181729	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128666699	128666700	+	IGR	DEL	TT	-	-	rs72039696		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	129241899	129241899	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	131266945	131266945	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	23106938	23106938	+	IGR	SNP	A	C	C	rs35493034		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33326211	33326211	+	IGR	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33326230	33326231	+	IGR	DNP	AG	CA	CA			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	39928515	39928515	+	IGR	SNP	A	C	C	rs140286791	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	48048608	48048609	+	IGR	INS	-	T	T	rs139652827	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	57315542	57315542	+	IGR	DEL	A	-	-	rs5798398		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69509166	69509177	+	IGR	DEL	AGAAGGAGAAGG	-	-	rs145845747		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69594096	69594102	+	IGR	DEL	AAGAGAT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	70472008	70472011	+	IGR	DEL	TTTG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82938355	82938356	+	IGR	DNP	TT	CC	CC			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87313528	87313528	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31652509	31652516	+	IGR	DEL	AAGGAAGA	-	-	rs148041842	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	33537175	33537175	+	IGR	DEL	G	-	-	rs9535810		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	33659342	33659345	+	IGR	DEL	GAGA	-	-	rs75925055		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	40836230	40836233	+	IGR	DEL	TAGG	-	-	rs72123101		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48708649	48708649	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57167493	57167493	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61798141	61798142	+	IGR	INS	-	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20228220	20228220	+	IGR	SNP	A	G	G	rs76101288	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21081685	21081685	+	IGR	DEL	T	-	-	rs111876082		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22150677	22150678	+	IGR	DEL	TT	-	-	rs112394422		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	31243467	31243467	+	IGR	DEL	T	-	-	rs71443390		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	34669510	34669513	+	IGR	DEL	GATG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	51931115	51931115	+	IGR	DEL	A	-	-	rs113538651		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54389567	54389570	+	IGR	DEL	AAGG	-	-	rs71446478		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59977607	59977607	+	IGR	DEL	A	-	-	rs36100736		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	76739246	76739249	+	IGR	DEL	AGAG	-	-	rs7150268		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85281016	85281023	+	IGR	DEL	CCTCCCTC	-	-	rs76839618		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85404273	85404274	+	IGR	INS	-	AGG	AGG			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97980586	97980593	+	IGR	DEL	TTCCTTTT	-	-	rs71883285	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98480461	98480462	+	IGR	INS	-	CTTT	CTTT	rs149441117	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98492599	98492602	+	IGR	DEL	AGAT	-	-	rs71462779		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	24409459	24409459	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32278861	32278862	+	IGR	DEL	GT	-	-	rs62004414		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	33398012	33398012	+	IGR	DEL	A	-	-	rs35400145		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53532927	53532928	+	IGR	DEL	AG	-	-	rs5812663		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60559482	60559482	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60559489	60559491	+	IGR	DEL	AGC	-	-	rs10600918	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	17641681	17641684	+	IGR	DEL	ATCT	-	-	rs66504203		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22672094	22672094	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22971062	22971064	+	IGR	DEL	TTA	-	-	rs72238542		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26635660	26635660	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27026818	27026819	+	IGR	DEL	AC	-	-	rs146528154		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32094998	32094998	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32103039	32103039	+	IGR	SNP	C	T	T	rs77199903		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32391450	32391450	+	IGR	SNP	A	G	G	rs150840786	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32391476	32391476	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490381	32490381	+	IGR	SNP	C	T	T	rs113695612		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32827911	32827911	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32847355	32847355	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32848495	32848495	+	IGR	SNP	C	G	G	rs139272736	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33044301	33044301	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33423153	33423153	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33537368	33537369	+	IGR	INS	-	AAAAG	AAAAG	rs147538249		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33538586	33538586	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33924604	33924604	+	IGR	SNP	C	A	A	rs151061603		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33934296	33934296	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33936810	33936810	+	IGR	SNP	A	G	G	rs139088746	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33948771	33948771	+	IGR	SNP	T	C	C	rs113829363		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33972958	33972958	+	IGR	DEL	A	-	-	rs146319188		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33988202	33988202	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34654655	34654655	+	IGR	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46391827	46391849	+	IGR	DEL	GATGATTCCACTCGAGTCCATTC	-	-	rs9708865		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46425735	46425735	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48747989	48747989	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52156157	52156160	+	IGR	DEL	GTGC	-	-	rs72162293	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60233124	60233124	+	IGR	DEL	A	-	-	rs66569946		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60558550	60558550	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82590689	82590690	+	IGR	INS	-	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	85850046	85850046	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	12928324	12928325	+	IGR	INS	-	TGTGTC	TGTGTC	rs147435965	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21334904	21334904	+	IGR	SNP	G	A	A	rs78048566		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21560338	21560339	+	IGR	INS	-	G	G	rs147837000		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25277438	25277438	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25283772	25283772	+	IGR	SNP	G	A	A	rs76587995	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25288870	25288872	+	IGR	DEL	AAT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39063535	39063538	+	IGR	DEL	TTCC	-	-	rs71764584		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	46754509	46754512	+	IGR	DEL	CCTT	-	-	rs143755906		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50675089	50675090	+	IGR	INS	-	A	A	rs145928412	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51084117	51084119	+	IGR	DEL	CAG	-	-	rs141311271		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51211612	51211613	+	IGR	INS	-	T	T	rs145674195		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51214602	51214613	+	IGR	DEL	CTTGGGCTGAAT	-	-	rs67660935		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68245833	68245837	+	IGR	DEL	ACCCA	-	-	rs141075073		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68879711	68879711	+	IGR	DEL	T	-	-	rs66480269		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	28798799	28798799	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	35279334	35279339	+	IGR	DEL	TGTGTA	-	-	rs71862275		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	52805297	52805297	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21817605	21817605	+	IGR	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36466971	36466972	+	IGR	DEL	TA	-	-	rs61286293		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37784742	37784742	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	109047021	109047021	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142566814	142566814	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143514821	143514821	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143537459	143537459	+	IGR	SNP	A	G	G	rs75684859		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148683397	148683397	+	IGR	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149037588	149037588	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	184321351	184321351	+	IGR	DEL	T	-	-	rs34570665		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	185630914	185630915	+	IGR	INS	-	AAC	AAC	rs143757827	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	197949866	197949866	+	IGR	DEL	C	-	-	rs5779895		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219827425	219827425	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221939770	221939771	+	IGR	DEL	GT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229385886	229385886	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248661267	248661267	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38572906	38572909	+	IGR	DEL	TGTG	-	-	rs113228691		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	5490471	5490471	+	IGR	SNP	C	T	T	rs115008809	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	59096322	59096322	+	IGR	SNP	T	C	C	rs78178782	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74320652	74320652	+	IGR	SNP	G	A	A	rs71774462		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87694694	87694694	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	145749	145750	+	IGR	INS	-	AT	AT	rs145922160	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19102676	19102679	+	IGR	DEL	TATA	-	-	rs11469015		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	19831683	19831698	+	IGR	DEL	AAGGAAGGAAGGAGAA	-	-	rs11475764		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	24757577	24757577	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25741411	25741411	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25742553	25742553	+	IGR	SNP	G	A	A	rs113670224		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29428939	29428939	+	IGR	SNP	A	C	C	rs113696749		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29449853	29449853	+	IGR	SNP	C	T	T	rs74807041	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29589297	29589297	+	IGR	DEL	C	-	-	rs73620372		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29593372	29593372	+	IGR	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29607619	29607619	+	IGR	SNP	G	A	A	rs148598658	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29608472	29608472	+	IGR	DEL	G	-	-	rs113600748		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	30001504	30001504	+	IGR	DEL	C	-	-	rs10712827		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38717569	38717570	+	IGR	INS	-	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10707302	10707302	+	IGR	SNP	C	T	T	rs140918681		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10710739	10710739	+	IGR	DEL	T	-	-	rs71326346		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10890023	10890023	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10894925	10894926	+	IGR	INS	-	CCTT	CCTT	rs142337572	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899762	10899762	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11118199	11118199	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11121892	11121892	+	IGR	SNP	C	T	T	rs147232217	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122396	11122396	+	IGR	SNP	C	T	T	rs77943088		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11151872	11151872	+	IGR	DEL	C	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	37958207	37958218	+	IGR	DEL	CCTTCCTTCCTC	-	-	rs148186753	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40096650	40096651	+	IGR	INS	-	AGATAGAT	AGATAGAT	rs146523294	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	42392892	42392903	+	IGR	DEL	AAGGAAGGAAGG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9578439	9578439	+	IGR	SNP	T	A	A	rs145537303	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9582489	9582489	+	IGR	SNP	T	C	C	rs147638602	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9582493	9582493	+	IGR	SNP	T	C	C	rs140721028	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9839674	9839674	+	IGR	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16351966	16351966	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16634989	16634989	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21579167	21579168	+	IGR	DEL	AT	-	-	rs415287		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	39724812	39724813	+	IGR	INS	-	T	T	rs78435529		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	42651493	42651494	+	IGR	INS	-	AAA	AAA			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108537208	108537209	+	IGR	INS	-	TTTGT	TTTGT			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	11664177	11664178	+	IGR	INS	-	CA	CA	rs144358585	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118643455	118643456	+	IGR	INS	-	TC	TC	rs145904259	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118927577	118927577	+	IGR	DEL	T	-	-	rs35699698		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122599631	122599631	+	IGR	DEL	G	-	-	rs80207078		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	122856821	122856822	+	IGR	INS	-	T	T	rs111773821		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	126006743	126006743	+	IGR	DEL	T	-	-	rs11342621		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132769700	132769700	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132769726	132769726	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132773842	132773842	+	IGR	SNP	A	G	G	rs56327186	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132814343	132814343	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133050737	133050737	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136886576	136886577	+	IGR	DEL	TG	-	-	rs148248796		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145398002	145398003	+	IGR	INS	-	G	G	rs79945288	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	159623086	159623086	+	IGR	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	159748683	159748683	+	IGR	DEL	C	-	-	rs72362877		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	16179619	16179620	+	IGR	INS	-	TCCCT	TCCCT	rs140485853	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	164323388	164323389	+	IGR	DEL	AC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	167623959	167623959	+	IGR	DEL	C	-	-	rs5836119		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17567379	17567379	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187949409	187949409	+	IGR	DEL	C	-	-	rs71399208		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201074097	201074097	+	IGR	SNP	C	T	T	rs144369478	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208120938	208120938	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	213716315	213716316	+	IGR	INS	-	A	A	rs144236905	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	33878348	33878349	+	IGR	INS	-	CTGT	CTGT	rs144537624	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35060066	35060067	+	IGR	DNP	GC	CT	CT	rs149226348	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35444341	35444341	+	IGR	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	45488408	45488408	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	46885949	46885950	+	IGR	INS	-	C	C	rs140616965	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	47018116	47018117	+	IGR	DEL	CT	-	-	rs147141093		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49490064	49490065	+	IGR	INS	-	TCTT	TCTT	rs147929971	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5496940	5496941	+	IGR	INS	-	G	G	rs141013580	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5612969	5612972	+	IGR	DEL	CAAA	-	-	rs78511787		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67277136	67277136	+	IGR	DEL	C	-	-	rs13421191		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	75493361	75493362	+	IGR	DEL	TG	-	-	rs2901661	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76816175	76816178	+	IGR	DEL	TGTA	-	-	rs72396662		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81645689	81645689	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88509822	88509823	+	IGR	DNP	GG	TT	TT			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92248405	92248405	+	IGR	SNP	T	A	A	rs80149496	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	99215624	99215625	+	IGR	DEL	AA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104434736	104434736	+	IGR	DEL	T	-	-	rs67125927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	115100928	115100929	+	IGR	INS	-	TG	TG	rs144154610	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116788533	116788533	+	IGR	DEL	T	-	-	rs71854862		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116960297	116960298	+	IGR	DEL	AG	-	-	rs76236521		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	125535187	125535187	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148207215	148207218	+	IGR	DEL	ACAA	-	-	rs11362766		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148395665	148395666	+	IGR	INS	-	A	A	rs147109850	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	162385136	162385136	+	IGR	DEL	G	-	-	rs149208797		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	177465985	177465986	+	IGR	DEL	AG	-	-	rs71628043		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182388530	182388530	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	191246289	191246292	+	IGR	DEL	GTGC	-	-	rs56390962		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194712076	194712081	+	IGR	DEL	CTCCTA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	197850455	197850455	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22723368	22723368	+	IGR	DEL	T	-	-	rs71957471		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	26067991	26067992	+	IGR	DEL	GT	-	-	rs35834313		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	59324873	59324874	+	IGR	INS	-	T	T	rs150326202	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	59394832	59394833	+	IGR	INS	-	AAAAC	AAAAC	rs148650758	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	7977110	7977111	+	IGR	INS	-	A	A	rs151111233	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	99110418	99110418	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	105652125	105652128	+	IGR	DEL	AAAC	-	-	rs10596767		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	10836710	10836712	+	IGR	DEL	TCA	-	-	rs10534724		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116508298	116508299	+	IGR	INS	-	TTCA	TTCA	rs138374595	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11678988	11678989	+	IGR	INS	-	T	T	rs140402436	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12304240	12304241	+	IGR	INS	-	AC	AC	rs142215129	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137776419	137776420	+	IGR	INS	-	T	T	rs34515892		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138696460	138696461	+	IGR	INS	-	TG	TG	rs145708900	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138733314	138733315	+	IGR	INS	-	A	A	rs150172779	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139786778	139786785	+	IGR	DEL	GGAAGGAA	-	-	rs112477691		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	142676825	142676826	+	IGR	INS	-	A	A	rs12152674		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145292568	145292568	+	IGR	DEL	A	-	-	rs77287584		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	147504908	147504909	+	IGR	INS	-	AG	AG	rs143618779		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149816951	149816951	+	IGR	DEL	T	-	-	rs67543330		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	153604663	153604664	+	IGR	DEL	CA	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	157090084	157090084	+	IGR	DEL	A	-	-	rs67116524		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	159674125	159674126	+	IGR	INS	-	A	A	rs112163401		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	171597023	171597023	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	175380157	175380157	+	IGR	DEL	T	-	-	rs150140423		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185838867	185838867	+	IGR	DEL	C	-	-	rs112735643		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190194908	190194911	+	IGR	DEL	TTTC	-	-	rs11468068		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190202809	190202809	+	IGR	SNP	G	A	A	rs113054272		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190540649	190540649	+	IGR	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190567803	190567805	+	IGR	DEL	ACA	-	-	rs66528226		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190575856	190575856	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190580618	190580618	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190633415	190633416	+	IGR	INS	-	T	T	rs113640699		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190635096	190635096	+	IGR	SNP	T	C	C	rs146543424	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19253980	19253981	+	IGR	DEL	CT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49263603	49263603	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49316691	49316691	+	IGR	SNP	C	T	T	rs74318250		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49516698	49516698	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53142049	53142049	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	60221218	60221219	+	IGR	INS	-	C	C	rs138786506	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65981373	65981374	+	IGR	INS	-	CC	CC	rs150100795	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	68214231	68214231	+	IGR	DEL	A	-	-	rs112723558		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70213023	70213023	+	IGR	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	90891199	90891199	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	95019966	95019966	+	IGR	DEL	T	-	-	rs112831515		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108959061	108959061	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110159876	110159879	+	IGR	DEL	CTTT	-	-	rs1814576	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114750559	114750560	+	IGR	DEL	AT	-	-	rs150162376		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	117161755	117161756	+	IGR	DNP	CC	AA	AA			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119600825	119600826	+	IGR	INS	-	T	T	rs149242286	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123156086	123156086	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130236226	130236226	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136049139	136049140	+	IGR	DEL	TG	-	-	rs6596341		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	147262651	147262651	+	IGR	DEL	G	-	-	rs112368497		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152811506	152811506	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	174812028	174812047	+	IGR	DEL	AAGGAAAGAAGGAAGGAAGA	-	-	rs111559272		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	175363133	175363133	+	IGR	SNP	C	G	G	rs149178680	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18245012	18245013	+	IGR	DEL	GC	-	-	rs77030995		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18673704	18673704	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2016780	2016781	+	IGR	INS	-	T	T	rs149119170	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33388053	33388054	+	IGR	INS	-	AAGGAAGG	AAGGAAGG			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37916000	37916000	+	IGR	DEL	T	-	-	rs35015375		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40067202	40067202	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5321323	5321323	+	IGR	DEL	C	-	-	rs34170247		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6037192	6037193	+	IGR	DEL	GC	-	-	rs71744471		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61082105	61082105	+	IGR	SNP	G	A	A	rs138187439	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67385175	67385179	+	IGR	DEL	TTTTG	-	-	rs36220032		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	71844322	71844323	+	IGR	INS	-	T	T	rs148340423	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7957643	7957644	+	IGR	INS	-	TG	TG	rs148722698	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8782173	8782173	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88707503	88707503	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	89159050	89159053	+	IGR	DEL	CACC	-	-	rs35819188		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	95472059	95472059	+	IGR	DEL	G	-	-	rs11335067		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	95878160	95878160	+	IGR	DEL	T	-	-	rs35255789		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97114785	97114786	+	IGR	INS	-	A	A	rs138926409	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98309092	98309094	+	IGR	DEL	AAG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116241203	116241214	+	IGR	DEL	TGGCGGTGGTAA	-	-	rs72216489	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116805703	116805704	+	IGR	INS	-	G	G	rs146832813	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	120263483	120263483	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	130877221	130877221	+	IGR	DEL	C	-	-	rs11307734		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	139383236	139383251	+	IGR	DEL	AAGGGAGAAAGGAAGC	-	-	rs12665587		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	16996727	16996727	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29044614	29044614	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48287633	48287636	+	IGR	DEL	TATG	-	-	rs67738399		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4978142	4978142	+	IGR	DEL	C	-	-	rs34758649		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57517526	57517529	+	IGR	DEL	CATA	-	-	rs146081336		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57544037	57544040	+	IGR	DEL	AACA	-	-	rs111449102	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57567372	57567374	+	IGR	DEL	GAA	-	-	rs142174260		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72035756	72035756	+	IGR	DEL	A	-	-	rs68011789		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72355435	72355435	+	IGR	DEL	G	-	-	rs272212		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78384347	78384348	+	IGR	INS	-	T	T	rs72561959	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81364474	81364474	+	IGR	DEL	G	-	-	rs68161682		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85354768	85354769	+	IGR	INS	-	T	T	rs72556666	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	88629536	88629537	+	IGR	INS	-	G	G	rs140226437	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92850051	92850051	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93767542	93767542	+	IGR	DEL	A	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	96672388	96672389	+	IGR	INS	-	GT	GT	rs144519698	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10874783	10874784	+	IGR	INS	-	TAGATAGC	TAGATAGC	rs67753401		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109659705	109659706	+	IGR	INS	-	AA	AA	rs149146458	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	11238297	11238298	+	IGR	INS	-	TCCC	TCCC	rs142250924	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	135028140	135028140	+	IGR	DEL	A	-	-	rs5887730		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	140032197	140032197	+	IGR	DEL	A	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142901089	142901089	+	IGR	SNP	T	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149692820	149692820	+	IGR	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15035197	15035200	+	IGR	DEL	TCTC	-	-	rs139020036		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24248753	24248754	+	IGR	INS	-	A	A	rs138366174	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	25588233	25588234	+	IGR	DEL	TC	-	-	rs140377180		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38682965	38682966	+	IGR	INS	-	T	T	rs144487433	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	40902620	40902620	+	IGR	DEL	T	-	-	rs75020927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	41122580	41122581	+	IGR	INS	-	AC	AC	rs55926817		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42376001	42376002	+	IGR	INS	-	T	T	rs149713298	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46037271	46037271	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217094	57217094	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57556713	57556717	+	IGR	DEL	TGGAG	-	-	rs62450829	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816568	61816568	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816572	61816572	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816910	61816910	+	IGR	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816993	61816993	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827108	61827108	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827218	61827218	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827263	61827263	+	IGR	SNP	C	A	A	rs143714333	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829786	61829786	+	IGR	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61832835	61832835	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65834140	65834140	+	IGR	DEL	T	-	-	rs149132760		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	70378497	70378500	+	IGR	DEL	CTTC	-	-	rs144373450		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79668490	79668491	+	IGR	DEL	AG	-	-	rs144117252		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	89662033	89662033	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	91367417	91367418	+	IGR	INS	-	GCGTGT	GCGTGT	rs139634336		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	97096757	97096757	+	IGR	DEL	T	-	-	rs34688567		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	102403510	102403512	+	IGR	DEL	ATG	-	-	rs147282927		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11496786	11496801	+	IGR	DEL	TCCTTCCTTCCTTCCC	-	-	rs56314963	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116686698	116686699	+	IGR	INS	-	CCTC	CCTC	rs142743732	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	117415806	117415806	+	IGR	DEL	C	-	-	rs66882870		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120494207	120494208	+	IGR	INS	-	C	C	rs145511948	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	122161094	122161095	+	IGR	INS	-	G	G	rs141562854	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	126531511	126531514	+	IGR	DEL	ACAC	-	-	rs113684950		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130621556	130621556	+	IGR	DEL	T	-	-	rs35918767		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131495953	131495954	+	IGR	INS	-	A	A	rs150074325	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137020727	137020730	+	IGR	DEL	GAGT	-	-	rs147140339	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138685008	138685011	+	IGR	DEL	TAGA	-	-	rs144263106		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	140374070	140374071	+	IGR	INS	-	A	A	rs143234526	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	140461395	140461396	+	IGR	INS	-	T	T	rs140693235	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	140477909	140477910	+	IGR	DEL	GG	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20492363	20492363	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	41238904	41238907	+	IGR	DEL	ACAA	-	-	rs148482803		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60064510	60064510	+	IGR	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60690347	60690348	+	IGR	INS	-	CC	CC	rs145289127	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62726248	62726251	+	IGR	DEL	TCTT	-	-	rs67610362	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64445826	64445845	+	IGR	DEL	CTTCCTTCCTTCCTTCCTTT	-	-	rs147214559	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65804570	65804583	+	IGR	DEL	TCCTTCCTTCCTTC	-	-	rs10591068	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	66194422	66194423	+	IGR	DEL	AG	-	-	rs35261990		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	68743189	68743192	+	IGR	DEL	GGGT	-	-	rs148912575		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70041804	70041811	+	IGR	DEL	GCCTCCGT	-	-	rs35746735		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73404099	73404100	+	IGR	INS	-	AGGA	AGGA			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73960089	73960089	+	IGR	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81838423	81838423	+	IGR	DEL	C	-	-	rs7010170		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88518292	88518293	+	IGR	INS	-	AGAG	AGAG	rs149055201	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89427965	89427969	+	IGR	DEL	AATTA	-	-	rs112308886		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	90507810	90507811	+	IGR	INS	-	CA	CA	rs140328912	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91188005	91188006	+	IGR	DEL	GT	-	-	rs5893118		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94201477	94201480	+	IGR	DEL	GGAG	-	-	rs2449608		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94372824	94372825	+	IGR	INS	-	AC	AC	rs144943727	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96225798	96225799	+	IGR	INS	-	GGAGTGCA	GGAGTGCA	rs139946283	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96800598	96800598	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97115620	97115623	+	IGR	DEL	ACTT	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	106528328	106528328	+	IGR	DEL	G	-	-	rs36061558		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	128966291	128966292	+	IGR	DEL	GC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66474655	66474655	+	IGR	SNP	C	T	T	rs74522963		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66481301	66481301	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68388370	68388370	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405236	68405236	+	IGR	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68405824	68405824	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68417808	68417808	+	IGR	SNP	A	G	G	rs74207163		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68418048	68418048	+	IGR	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68419332	68419332	+	IGR	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68421949	68421951	+	IGR	DEL	AAT	-	-	rs67870006		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68425723	68425723	+	IGR	DEL	C	-	-	rs149468092		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68430957	68430957	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477451	68477451	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69030387	69030387	+	IGR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71249868	71249868	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7565668	7565668	+	IGR	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	79183353	79183360	+	IGR	DEL	AAGGAAGA	-	-	rs71354664		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81758070	81758071	+	IGR	INS	-	TG	TG	rs147688397	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	83063970	83063977	+	IGR	DEL	AAGGAAGA	-	-	rs71991518		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89340937	89340938	+	IGR	INS	-	AC	AC	rs139124180	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92725775	92725776	+	IGR	INS	-	AT	AT	rs75718703	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61726607	61726607	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61823579	61823579	+	IGR	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13446200	13446200	+	IGR	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59011846	59011846	+	IGR	SNP	C	A	A	rs79976425		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59013319	59013319	+	IGR	DEL	C	-	-	rs56037744		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59014683	59014684	+	IGR	DEL	AT	-	-	rs10534960		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59023018	59023018	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9931548	9931548	+	IGR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9951904	9951904	+	IGR	DEL	A	-	-	rs112684711		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77953122	77953122	+	Intron	DEL	A	-	-	rs11288720		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCPIP1	80124	broad.mit.edu	37	8	67577170	67577170	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177619695	177619695	+	Intron	SNP	C	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79890727	79890728	+	Intron	INS	-	T	T	rs7041795		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184586748	184586748	+	Silent	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58290995	58290995	+	Intron	SNP	A	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85550564	85550565	+	Intron	INS	-	A	A	rs138035028	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR88	126248	broad.mit.edu	37	19	33637339	33637342	+	Intron	DEL	TTCC	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137423338	137423339	+	Intron	INS	-	AA	AA	rs66902804		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78997973	78997973	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168110726	168110726	+	Intron	SNP	T	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC11	23318	broad.mit.edu	37	1	52926838	52926838	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND3	60685	broad.mit.edu	37	6	38005925	38005925	+	Intron	SNP	G	A	A	rs115718822	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77775484	77775484	+	Silent	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE27	118813	broad.mit.edu	37	10	99508143	99508143	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF295	49854	broad.mit.edu	37	21	43414130	43414130	+	Silent	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385B	151126	broad.mit.edu	37	2	180554545	180554554	+	Intron	DEL	TGTGTGTGTT	-	-	rs67964547		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF434	54925	broad.mit.edu	37	16	3432780	3432780	+	3'UTR	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21587910	21587911	+	Intron	INS	-	TG	TG	rs71176868		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125989598	125989598	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59632	59632	+	Intron	SNP	C	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	124080002	124080003	+	Frame_Shift_Ins	INS	-	C	C	rs138494701	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF74	7625	broad.mit.edu	37	22	20748987	20748987	+	Intron	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40539838	40539838	+	3'UTR	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238051732	238051732	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	125275040	125275040	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31005104	31005105	+	Intron	INS	-	GAAGGAAG	GAAGGAAG			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3490411	3490411	+	Intron	SNP	A	G	G			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	77107149	77107150	+	Intron	INS	-	AA	AA	rs138303444	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	80036146	80036149	+	Intron	DEL	TCCC	-	-	rs10568657		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2042277	2042278	+	Intron	INS	-	TG	TG	rs145668053	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80771734	80771734	+	Missense_Mutation	SNP	G	A	A	rs143495342	byFrequency;by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31087616	31087616	+	5'Flank	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37216056	37216057	+	Intron	DEL	AC	-	-	rs34565598		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35136441	35136454	+	Intron	DEL	ACACAGACACACAC	-	-	rs72337452	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143166511	143166511	+	Intron	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143983223	143983224	+	Intron	INS	-	A	A	rs148621543		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16889571	16889572	+	RNA	INS	-	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16889795	16889795	+	RNA	SNP	G	A	A			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173228463	173228464	+	Intron	INS	-	C	C	rs140914824	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10174073	10174073	+	Intron	SNP	A	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	19959847	19959847	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17387152	17387152	+	5'Flank	SNP	G	T	T	rs146187626	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	167019242	167019242	+	Intron	SNP	C	T	T	rs149162931	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65975263	65975263	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89890630	89890630	+	Intron	SNP	G	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	652071	652071	+	Intron	SNP	G	C	C	rs112933525		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13753515	13753530	+	Intron	DEL	CCATCCATCCATCCAC	-	-	rs150190394	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14683170	14683170	+	Intron	DEL	G	-	-	rs35282415		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150533242	150533243	+	Intron	DEL	GA	-	-	rs113640280		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190840895	190840895	+	Intron	DEL	G	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190845995	190845995	+	Intron	SNP	T	A	A	rs73614742	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	1515541	1515607	+	Intron	DEL	GAGCTGCTGCTTCACACTGACTTACACGGTGAGCAGCGGCGGCAGGGGAGGAGGTGGAACCCGCGGC	-	-	rs66528622	by1000genomes	TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12432781	12432781	+	Intron	DEL	T	-	-			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128334151	128334152	+	Intron	DEL	TT	-	-	rs143810487		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66463853	66463854	+	Intron	INS	-	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66464798	66464798	+	Intron	SNP	A	T	T	rs12553581		TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66465231	66465231	+	Intron	SNP	C	T	T			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11441	11441	+	RNA	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	12864	12864	+	RNA	SNP	T	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
