Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AAK1	22848	broad.mit.edu	37	2	69759299	69759299	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87190651	87190651	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183665138	183665138	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22068699	22068699	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74759024	74759024	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF1	23	broad.mit.edu	37	6	30553782	30553782	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179112177	179112177	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109694035	109694035	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD9	28976	broad.mit.edu	37	3	128627982	128627982	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD5	91452	broad.mit.edu	37	10	27494124	27494124	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236889367	236889367	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185488	127185488	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	128018913	128018913	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156932615	156932615	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106974524	106974524	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107083274	107083274	+	RNA	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107113822	107113822	+	RNA	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33649002	33649002	+	Silent	SNP	G	T	T	rs111792611		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33662024	33662024	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881126	33881126	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100649235	100649235	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73433035	73433035	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64527519	64527519	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7804863	7804863	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1C	126	broad.mit.edu	37	4	100268947	100268947	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADI1	55256	broad.mit.edu	37	2	3502845	3502845	+	Silent	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12366893	12366893	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105412931	105412931	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117143439	117143439	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B1	231	broad.mit.edu	37	7	134135471	134135471	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19611103	19611103	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73676241	73676241	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233321897	233321897	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113353354	113353354	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMFR	267	broad.mit.edu	37	16	56423276	56423276	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMZ1	155185	broad.mit.edu	37	7	2740344	2740344	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41582018	41582018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95648827	95648827	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD5	63926	broad.mit.edu	37	20	10030169	10030169	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99837486	99837486	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21239524	21239524	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68139522	68139522	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110561279	110561279	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69043458	69043458	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17907141	17907141	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156909259	156909259	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120351059	120351059	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT2	9915	broad.mit.edu	37	15	80889556	80889556	+	3'UTR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35748527	35748527	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP1	50807	broad.mit.edu	37	8	131130904	131130904	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH8	84913	broad.mit.edu	37	2	85991319	85991319	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119512457	119512457	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L14	79370	broad.mit.edu	37	12	12247496	12247496	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMX	660	broad.mit.edu	37	X	15561295	15561295	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26238534	26238534	+	5'Flank	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60903630	60903630	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921270	24921270	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1R	715	broad.mit.edu	37	12	7188193	7188193	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf95	375057	broad.mit.edu	37	1	226784561	226784561	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf166	128826	broad.mit.edu	37	20	61150906	61150906	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31643259	31643259	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf96	140680	broad.mit.edu	37	20	270179	270179	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf59	56683	broad.mit.edu	37	21	33974134	33974134	+	3'UTR	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242814287	242814287	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf41	153222	broad.mit.edu	37	5	172537595	172537595	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40972774	40972774	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89901016	89901016	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf33	65265	broad.mit.edu	37	8	146278737	146278737	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54914873	54914873	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1919407	1919407	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALM1	801	broad.mit.edu	37	14	90870298	90870298	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR	811	broad.mit.edu	37	19	13050438	13050438	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3786541	3786541	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7797473	7797473	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPNS1	826	broad.mit.edu	37	19	36634000	36634000	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104877974	104877974	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX7	23492	broad.mit.edu	37	22	39529820	39529820	+	3'UTR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109B	55013	broad.mit.edu	37	4	110606340	110606340	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC112	153733	broad.mit.edu	37	5	114611781	114611781	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC135	84229	broad.mit.edu	37	16	57756693	57756693	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB1IP1	57820	broad.mit.edu	37	14	20784496	20784496	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR4	1233	broad.mit.edu	37	3	32995942	32995942	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80290604	80290604	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC7	8317	broad.mit.edu	37	1	91973559	91973559	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21755753	21755753	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19503202	19503202	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44845618	44845618	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915863	26915863	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4935956	4935956	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104074252	104074252	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49536578	49536578	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	440565	440565	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA1	1134	broad.mit.edu	37	2	175618340	175618340	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38723908	38723908	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4E	26253	broad.mit.edu	37	12	8693515	8693515	+	5'UTR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC1	1192	broad.mit.edu	37	6	31698644	31698644	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033609	205033609	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2787250	2787250	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94039035	94039035	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55924883	55924883	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139890019	139890019	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48369172	48369172	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40771464	40771464	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408223	4408223	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36714407	36714407	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207647191	207647191	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRADD	8738	broad.mit.edu	37	12	94072872	94072872	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36749417	36749417	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668587	113668587	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114448761	114448761	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75982567	75982567	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23476619	23476619	+	3'UTR	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11364914	11364914	+	Silent	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSK	1513	broad.mit.edu	37	1	150778146	150778146	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134292127	134292127	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47395892	47395892	+	Silent	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112816	59112816	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	122004412	122004412	+	Silent	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	49867080	49867080	+	5'UTR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779123	36779123	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110576267	110576267	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118582347	118582347	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKQ	1609	broad.mit.edu	37	4	957013	957013	+	Silent	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX33	56919	broad.mit.edu	37	17	5364391	5364391	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39050300	39050300	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83252726	83252726	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118469421	118469421	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21826986	21826986	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11556163	11556163	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11671588	11671588	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132198072	132198072	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65878623	65878623	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225669891	225669891	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169446070	169446070	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK5	55816	broad.mit.edu	37	20	53260092	53260092	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117403175	117403175	+	Missense_Mutation	SNP	C	G	G	rs142110596		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32464844	32464844	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28407144	28407144	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55220240	55220240	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHHADH	1962	broad.mit.edu	37	3	184910174	184910174	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45003068	45003068	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80634726	80634726	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100402407	100402407	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89154817	89154817	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD3	956	broad.mit.edu	37	3	40468909	40468909	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227423	38227423	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706660	96706660	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144943470	144943470	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16548592	16548592	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESCO1	114799	broad.mit.edu	37	18	19115988	19115988	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72234401	72234401	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA3	2140	broad.mit.edu	37	1	28362227	28362227	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120A	23196	broad.mit.edu	37	9	96312945	96312945	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71235313	71235313	+	Silent	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29247185	29247185	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM184A	79632	broad.mit.edu	37	6	119327194	119327194	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12236592	12236592	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM72D	728833	broad.mit.edu	37	1	143912270	143912270	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187518812	187518812	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242334	126242334	+	Silent	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBF1	85302	broad.mit.edu	37	17	73921504	73921504	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL5	26234	broad.mit.edu	37	4	15627285	15627285	+	Missense_Mutation	SNP	C	A	A	rs149921734		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL5	26234	broad.mit.edu	37	4	15627406	15627406	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157490734	157490734	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125033871	125033871	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125113407	125113407	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD4	121512	broad.mit.edu	37	12	32764282	32764282	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF18	8817	broad.mit.edu	37	5	170883632	170883632	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97058419	97058419	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34205613	34205613	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110037721	110037721	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325389	152325389	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486278	128486278	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14775758	14775758	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65161533	65161533	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSIP1	161835	broad.mit.edu	37	15	40031846	40031846	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR2	9513	broad.mit.edu	37	17	7499360	7499360	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976153	46976153	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47322210	47322211	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89895098	89895098	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230398372	230398372	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP4	115361	broad.mit.edu	37	1	89656943	89656943	+	Splice_Site	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89732274	89732274	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89733118	89733118	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79117888	79117888	+	Silent	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79117986	79117986	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154271093	154271093	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGH	8836	broad.mit.edu	37	8	63927973	63927973	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP5	55340	broad.mit.edu	37	7	150439330	150439330	+	Missense_Mutation	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1L	54584	broad.mit.edu	37	22	19799918	19799918	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNGT2	2793	broad.mit.edu	37	17	47284866	47284866	+	Intron	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPTAB	79158	broad.mit.edu	37	12	102164889	102164889	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133375049	133375049	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC5	2262	broad.mit.edu	37	13	93518549	93518549	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR22	2845	broad.mit.edu	37	7	107114603	107114603	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724196	112724196	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117121732	117121732	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105797526	105797526	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94138122	94138122	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120707586	120707586	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178416417	178416417	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89983860	89983860	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS4	54930	broad.mit.edu	37	14	23416971	23416971	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156522332	156522332	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156533648	156533648	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5290728	5290728	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153220036	153220036	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXDC	284004	broad.mit.edu	37	17	80393670	80393670	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIC2	23119	broad.mit.edu	37	22	21800489	21800489	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BA	337875	broad.mit.edu	37	1	120906333	120906334	+	RNA	DNP	GG	TT	TT			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST3H2BB	128312	broad.mit.edu	37	1	228645844	228645844	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75094920	75094920	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75109223	75109223	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147121	26147121	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1B	3304	broad.mit.edu	37	6	31797652	31797653	+	Frame_Shift_Ins	INS	-	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92508872	92508872	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3137590	3137590	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27707890	27707890	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT57	55081	broad.mit.edu	37	3	107882488	107882489	+	Intron	DNP	CC	AA	AA			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1A	3552	broad.mit.edu	37	2	113532837	113532837	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35857028	35857028	+	5'UTR	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62329964	62329964	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61897387	61897387	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2748740	2748740	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54795926	54795926	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7608274	7608274	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146971197	146971197	+	3'UTR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47990687	47990687	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19295179	19295179	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196394954	196394954	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55955049	55955049	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55964777	55964778	+	Intron	DNP	GG	TT	TT			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0391	9692	broad.mit.edu	37	14	35593129	35593129	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180887047	180887047	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1715	80856	broad.mit.edu	37	2	176794757	176794757	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8890429	8890429	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241724517	241724517	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70293474	70293474	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	137013243	137013243	+	Silent	SNP	T	G	G	rs143713380	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51323053	51323054	+	Intron	DNP	GG	TT	TT			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRI1	65095	broad.mit.edu	37	19	10675569	10675569	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52708940	52708940	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-1	387264	broad.mit.edu	37	11	1605902	1605902	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651151	1651151	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7040236	7040236	+	Splice_Site	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7049207	7049207	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250338	129250338	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133920846	133920846	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203741097	203741097	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38504033	38504033	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54780306	54780306	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC286238	286238	broad.mit.edu	37	9	91262377	91262377	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23011073	23011073	+	RNA	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62894657	62894657	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39983249	39983249	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197598394	197598394	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368149	42368149	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141232928	141232928	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85459121	85459121	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD4	147719	broad.mit.edu	37	19	42342006	42342006	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL4	131375	broad.mit.edu	37	3	42445487	42445487	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140953329	140953329	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140953365	140953365	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71197312	71197312	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90382916	90382916	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECR	51102	broad.mit.edu	37	1	29543143	29543143	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131927661	131927661	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2A	4205	broad.mit.edu	37	15	100250868	100250868	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL14	57721	broad.mit.edu	37	4	119609206	119609206	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141727437	141727437	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141776013	141776013	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR522	574495	broad.mit.edu	37	19	54254406	54254406	+	5'Flank	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89128839	89128839	+	Missense_Mutation	SNP	C	T	T	rs146269135		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102464128	102464128	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102592296	102592296	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100843666	100843666	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17949553	17949553	+	Missense_Mutation	SNP	C	T	T	rs140695246	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL50	54534	broad.mit.edu	37	9	104152941	104152941	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59857105	59857105	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59857726	59857726	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59828639	59828639	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTL5	9633	broad.mit.edu	37	11	68480731	68480731	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9017161	9017161	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680387	100680387	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135516134	135516134	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15854300	15854301	+	Intron	DNP	GG	TT	TT			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10404366	10404366	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10541663	10541663	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10354052	10354052	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30408223	30408223	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26423476	26423476	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52720687	52720687	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2044061	2044061	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89883723	89883723	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16895567	16895567	+	Splice_Site	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6618789	6618789	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541071	133541071	+	Silent	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636389	133636389	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24914230	24914230	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA1	8648	broad.mit.edu	37	2	24965175	24965175	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	133014518	133014518	+	Intron	SNP	C	G	G	rs78879023		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK7	140609	broad.mit.edu	37	1	198166966	198166966	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699489	20699489	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170317	77170317	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBID	84807	broad.mit.edu	37	19	36387822	36387822	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236189162	236189162	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52508881	52508881	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51192620	51192620	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124676363	124676363	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1038187	1038188	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1038314	1038314	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369522	56369522	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26108190	26108190	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84733760	84733760	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRN1L	123904	broad.mit.edu	37	16	67919707	67919707	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79175640	79175640	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107691475	107691475	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR2	23620	broad.mit.edu	37	2	11800123	11800123	+	Intron	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110287816	110287816	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT7	283927	broad.mit.edu	37	16	77775523	77775523	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13381346	13381346	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP62CL	54830	broad.mit.edu	37	X	106396568	106396568	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28090154	28090154	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA3	80207	broad.mit.edu	37	19	46032229	46032229	+	3'UTR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7949615	7949615	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394972	29394972	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C4	138804	broad.mit.edu	37	9	107288584	107288584	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685220	248685220	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167049	248167049	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167296	248167296	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247364	248247364	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112175	248112175	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112611	248112611	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343380	248343380	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248569491	248569491	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436583	248436583	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180582367	180582367	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322518	55322518	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339950	55339950	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245659	59245659	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4870218	4870218	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4870358	4870358	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N1	79473	broad.mit.edu	37	11	5809935	5809935	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799626	5799626	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020314	56020314	+	Silent	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148733441	148733441	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117086345	117086345	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117087493	117087493	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29596311	29596311	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29596369	29596369	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29630272	29630272	+	Splice_Site	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564456	176564456	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX4	5078	broad.mit.edu	37	7	127251539	127251539	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31815437	31815437	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134073399	134073399	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141336110	141336110	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58240668	58240668	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140176239	140176239	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140603978	140603978	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531034	140531034	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95395390	95395390	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136472232	136472232	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55127425	55127425	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20376593	20376593	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230472911	230472911	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHIPL	84457	broad.mit.edu	37	10	60994229	60994229	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4K2A	55361	broad.mit.edu	37	10	99358841	99358841	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25158306	25158306	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33049567	33049567	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAG1	5324	broad.mit.edu	37	8	57079013	57079013	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81973536	81973536	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198948482	198948482	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG3	26030	broad.mit.edu	37	14	65194383	65194383	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68028658	68028658	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43927886	43927886	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131831115	131831115	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNN	5411	broad.mit.edu	37	14	39650219	39650219	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52185109	52185109	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84558432	84558432	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104055	53104055	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARD	5467	broad.mit.edu	37	6	35388099	35388099	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23815782	23815782	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA3	8541	broad.mit.edu	37	19	49642922	49642922	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203024683	203024683	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27746978	27746978	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37518147	37518147	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509862	23509862	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527423	23527423	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE4	29964	broad.mit.edu	37	6	41753093	41753093	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82125715	82125715	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179315752	179315752	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH2	58510	broad.mit.edu	37	19	36302977	36302977	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138739120	138739120	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458454	142458454	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRTG	283659	broad.mit.edu	37	15	55970202	55970202	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43371900	43371900	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43709570	43709570	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680499	43680499	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43430891	43430891	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43528911	43528911	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43576563	43576563	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43762451	43762451	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71439908	71439908	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209357910	209357910	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN21	11099	broad.mit.edu	37	14	88945231	88945231	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949913	70949913	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198687238	198687238	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128294223	128294223	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926523	157926523	+	Missense_Mutation	SNP	C	G	G	rs151334443		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71314018	71314018	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320844	52320844	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB4A	5867	broad.mit.edu	37	1	229422169	229422169	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76260133	76260133	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20392725	20392725	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109378660	109378660	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24583167	24583167	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP8	5932	broad.mit.edu	37	18	20573261	20573261	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP8	5932	broad.mit.edu	37	18	20581443	20581443	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35690699	35690699	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15B	29890	broad.mit.edu	37	3	51429993	51429993	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS2	348093	broad.mit.edu	37	15	65042711	65042711	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL4	9401	broad.mit.edu	37	8	145742189	145742189	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204136993	204136993	+	5'Flank	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101018192	101018192	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72977046	72977046	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT2	89941	broad.mit.edu	37	16	723512	723512	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOV	171177	broad.mit.edu	37	15	41165847	41165847	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICH2	9912	broad.mit.edu	37	17	12883566	12883566	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105105732	105105732	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105263934	105263934	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43386379	43386379	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104309130	104309130	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNH1	6050	broad.mit.edu	37	11	499889	499889	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBLD3	28956	broad.mit.edu	37	1	156024928	156024928	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68904894	68904894	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD2	23248	broad.mit.edu	37	1	150443311	150443311	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP9	653162	broad.mit.edu	37	9	79014152	79014152	+	3'UTR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7230298	7230298	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	948729	948729	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23401638	23401638	+	3'UTR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN3	10313	broad.mit.edu	37	11	63488495	63488495	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237519262	237519262	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB	6294	broad.mit.edu	37	19	5668041	5668041	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200213787	200213787	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200246581	200246581	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166164294	166164294	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167141201	167141201	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71391419	71391419	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELO	83642	broad.mit.edu	37	22	50649442	50649442	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9197423	9197423	+	Intron	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101046458	101046458	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT7L	285961	broad.mit.edu	37	10	38682041	38682041	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT7	989	broad.mit.edu	37	7	35913313	35913313	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERGEF	26297	broad.mit.edu	37	11	18028280	18028280	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95080889	95080889	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180014089	180014089	+	Silent	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85894955	85894956	+	Intron	INS	-	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67161182	67161182	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235951280	235951280	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51207301	51207301	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHQ1	55164	broad.mit.edu	37	3	72861978	72861978	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50376446	50376446	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3673237	3673237	+	Missense_Mutation	SNP	C	A	A	rs147714278	byFrequency	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72191385	72191385	+	Splice_Site	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232534931	232534931	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX4	51804	broad.mit.edu	37	14	61180433	61180433	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164700105	164700105	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164755823	164755823	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159921434	159921434	+	3'UTR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A6	9990	broad.mit.edu	37	15	34528982	34528982	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122755726	122755726	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A1	6580	broad.mit.edu	37	6	160543347	160543347	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A12	8604	broad.mit.edu	37	2	172712358	172712358	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107350482	107350482	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118588223	118588223	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18254401	18254402	+	Intron	DNP	TC	AA	AA			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220502499	220502499	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1208834	1208834	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55725744	55725744	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67300259	67300259	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144905986	144905986	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAL1	50485	broad.mit.edu	37	2	217311909	217311909	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160137168	160137168	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2694615	2694615	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49831549	49831549	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51571223	51571223	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130748486	130748486	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121444861	121444861	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCD1	90853	broad.mit.edu	37	1	32265567	32265567	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRED2	200734	broad.mit.edu	37	2	65540932	65540932	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158605859	158605859	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9069842	9069842	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109192760	109192760	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149508616	149508616	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149525007	149525007	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48209006	48209006	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22354578	22354578	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52540712	52540712	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	103988241	103988241	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	153000426	153000426	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74472400	74472400	+	3'UTR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131311793	131311793	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUCLA2	8803	broad.mit.edu	37	13	48523484	48523484	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SWAP70	23075	broad.mit.edu	37	11	9749781	9749781	+	Intron	SNP	C	A	A	rs141987102	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE2	256126	broad.mit.edu	37	19	13011369	13011369	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12183494	12183494	+	Silent	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12183496	12183496	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC4	255061	broad.mit.edu	37	17	47917224	47917224	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75278382	75278382	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120809131	120809131	+	Intron	SNP	C	A	A	rs149567370	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23861998	23861998	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5L	27097	broad.mit.edu	37	1	229737881	229737881	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100548046	100548046	+	Splice_Site	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47188355	47188355	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79278684	79278684	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114841492	114841492	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35085943	35085943	+	3'UTR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90437534	90437534	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65188410	65188410	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30702510	30702510	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50810801	50810801	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50683152	50683152	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44951735	44951735	+	Missense_Mutation	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56725548	56725548	+	Intron	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11485770	11485770	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56827699	56827699	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35697928	35697928	+	Intron	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF2	23671	broad.mit.edu	37	2	192818511	192818511	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5734021	5734021	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM173	340061	broad.mit.edu	37	5	138860697	138860697	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94805438	94805438	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM74	157753	broad.mit.edu	37	8	109797177	109797177	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM88	92162	broad.mit.edu	37	17	7758930	7758930	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68699044	68699044	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11B	4982	broad.mit.edu	37	8	119941227	119941227	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF13B	23495	broad.mit.edu	37	17	16855909	16855909	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP1	7141	broad.mit.edu	37	2	217724465	217724466	+	Intron	DNP	CC	AA	AA			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578393	7578393	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144345202	144345202	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10916319	10916319	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55035146	55035146	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM56	81844	broad.mit.edu	37	7	100731915	100731915	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248023900	248023900	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72963077	72963077	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116632237	116632237	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3431341	3431341	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV3	162514	broad.mit.edu	37	17	3432084	3432084	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51871474	51871474	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94848166	94848166	+	Intron	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC5	91875	broad.mit.edu	37	14	20774142	20774142	+	5'UTR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179640063	179640063	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTPA	7274	broad.mit.edu	37	8	63985621	63985621	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132238049	132238049	+	Silent	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22836197	22836197	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP2	7288	broad.mit.edu	37	19	49399713	49399713	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139576610	139576610	+	Intron	SNP	A	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA5	79876	broad.mit.edu	37	3	132394424	132394424	+	Intron	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156990505	156990505	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103316347	103316347	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128918638	128918638	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69884077	69884077	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150385936	150385936	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773858	229773858	+	Silent	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	70304480	70304480	+	IGR	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	86787449	86787449	+	IGR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18994127	18994127	+	IGR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49856279	49856279	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	64942430	64942430	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	85906701	85906701	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016129	90016129	+	IGR	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016750	90016751	+	IGR	DNP	GG	TT	TT			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19467452	19467452	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362165	66362165	+	IGR	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88547971	88547971	+	IGR	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	65068319	65068319	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22567122	22567122	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	82302688	82302688	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32926568	32926568	+	IGR	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605893	33605893	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647363	33647363	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3168864	3168864	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68237732	68237732	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	8546597	8546597	+	IGR	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22647428	22647428	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281875	29281875	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	39727555	39727555	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209385	55209385	+	IGR	SNP	G	T	T	rs8105212	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	118242720	118242720	+	IGR	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13172881	13172881	+	IGR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903199	148903199	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149104212	149104213	+	IGR	INS	-	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245272	166245272	+	IGR	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245871	166245871	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	210439487	210439487	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	93850421	93850421	+	IGR	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15374176	15374176	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22200583	22200583	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24474686	24474686	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31803105	31803105	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32433801	32433801	+	IGR	SNP	A	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130254284	130254284	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136957260	136957260	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162357711	162357711	+	IGR	DEL	C	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186412441	186412441	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	226857975	226857975	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	47918187	47918187	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52799628	52799629	+	IGR	INS	-	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96244962	96244962	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97725713	97725713	+	IGR	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104221831	104221831	+	IGR	SNP	T	A	A	rs867367	byFrequency;by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	13501871	13501871	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98376719	98376719	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118496746	118496746	+	IGR	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909565	25909565	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365621	30365621	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112677159	112677159	+	IGR	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85140292	85140292	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93801967	93801967	+	IGR	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	45856851	45856851	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215725	57215725	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65081867	65081867	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6968130	6968131	+	IGR	INS	-	GGTGG	GGTGG	rs116137075	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106023691	106023691	+	IGR	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	108185984	108185984	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36953590	36953590	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87055515	87055515	+	IGR	SNP	C	A	A	rs76875638	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30559320	30559320	+	IGR	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68324737	68324737	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673899	84673899	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674751	84674751	+	IGR	SNP	C	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100057687	100057687	+	IGR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74804765	74804765	+	IGR	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	7618464	7618464	+	IGR	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86958742	86958742	+	IGR	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79968254	79968254	+	Intron	SNP	T	G	G			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62292765	62292765	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53010452	53010452	+	Silent	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85623548	85623548	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113145173	113145173	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113145230	113145230	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241958594	241958594	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124154754	124154754	+	Intron	SNP	A	T	T	rs68167124		TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69959121	69959121	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168100378	168100378	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YPEL3	83719	broad.mit.edu	37	16	30106460	30106460	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12A	80149	broad.mit.edu	37	1	37941031	37941031	+	Intron	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698305	111698305	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108756	147108756	+	Silent	SNP	C	T	T	rs17509456	by1000genomes	TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286342	57286342	+	Missense_Mutation	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44801467	44801467	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF107	51427	broad.mit.edu	37	7	64167419	64167419	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF16	7564	broad.mit.edu	37	8	146157289	146157289	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF184	7738	broad.mit.edu	37	6	27420578	27420578	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74671788	74671788	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF256	10172	broad.mit.edu	37	19	58453004	58453004	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF488	118738	broad.mit.edu	37	10	48371205	48371205	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF594	84622	broad.mit.edu	37	17	5086105	5086105	+	Missense_Mutation	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	87020	87020	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF671	79891	broad.mit.edu	37	19	58231624	58231624	+	3'UTR	SNP	T	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF709	163051	broad.mit.edu	37	19	12575152	12575152	+	Silent	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31086155	31086155	+	Missense_Mutation	SNP	T	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55064955	55064955	+	RNA	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31284440	31284440	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31307351	31307351	+	Silent	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22985248	22985248	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25429659	25429659	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121116645	121116645	+	Intron	DEL	T	-	-			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	20718725	20718725	+	Intron	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89399398	89399398	+	RNA	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75466106	75466106	+	5'Flank	SNP	C	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374304	95374304	+	RNA	SNP	C	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69340614	69340614	+	Intron	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142008792	142008792	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142168742	142168742	+	Intron	SNP	G	A	A			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142327036	142327036	+	Intron	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148984923	148984923	+	Intron	SNP	G	C	C			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
