Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7435292	7435292	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9225296	9225296	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9265181	9265181	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9225296	9225296	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9265181	9265181	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS	16	broad.mit.edu	37	16	70298758	70298758	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67187504	67187504	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67190582	67190582	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67187504	67187504	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67190582	67190582	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94496568	94496568	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94496568	94496568	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169830485	169830485	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169836338	169836338	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169830485	169830485	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169836338	169836338	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87041061	87041061	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123434340	123434340	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123434340	123434340	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC10	89845	broad.mit.edu	37	6	43406298	43406298	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48218375	48218375	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48218375	48218375	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48149223	48149223	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48167812	48167812	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48172004	48172004	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48149223	48149223	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48167812	48167812	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48172004	48172004	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16110579	16110579	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16110579	16110579	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48745686	48745686	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD10	55347	broad.mit.edu	37	3	111710643	111710643	+	3'UTR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD10	55347	broad.mit.edu	37	3	111710643	111710643	+	3'UTR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204260252	204260252	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204260252	204260252	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADL	33	broad.mit.edu	37	2	211085421	211085421	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADL	33	broad.mit.edu	37	2	211085421	211085421	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89400186	89400186	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89400186	89400186	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50472204	50472204	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN2	41	broad.mit.edu	37	12	50472204	50472204	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER1	125981	broad.mit.edu	37	19	6309966	6309966	+	Intron	SNP	T	A	A	rs113804229		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61561658	61561658	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP5	54	broad.mit.edu	37	19	11687570	11687570	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP5	54	broad.mit.edu	37	19	11687570	11687570	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	140979120	140979120	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	140979120	140979120	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20490056	20490056	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20490056	20490056	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568343	229568343	+	Silent	SNP	G	T	T	rs121909526		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568343	229568343	+	Silent	SNP	G	T	T	rs121909526		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236907995	236907995	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236907995	236907995	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66322052	66322052	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2A	92	broad.mit.edu	37	2	148657174	148657174	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR2A	92	broad.mit.edu	37	2	148657174	148657174	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106188406	106188406	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106203999	106203999	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236561	106236561	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106311889	106311889	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444684	106444684	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106833751	106833751	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095455	107095455	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236561	106236561	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106311889	106311889	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444684	106444684	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106833751	106833751	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107022333	107022333	+	Splice_Site	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107095455	107095455	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549669	33549669	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33643548	33643548	+	Missense_Mutation	SNP	C	A	A	rs138321976		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33549669	33549669	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33643548	33643548	+	Missense_Mutation	SNP	C	A	A	rs138321976		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520011	72520011	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520010	72520011	+	Intron	DNP	GC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5189936	5189936	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100672318	100672318	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100672318	100672318	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956400	128956400	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956400	128956400	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28209990	28209990	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28209990	28209990	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43925996	43925996	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43925996	43925996	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178564850	178564850	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296585	28296585	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296585	28296585	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS7	11173	broad.mit.edu	37	15	79080791	79080791	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18639359	18639359	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18639359	18639359	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123008911	123008911	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123021835	123021835	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123021897	123021897	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123021897	123021897	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131964130	131964130	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131964130	131964130	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4164474	4164474	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4164474	4164474	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33562427	33562427	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33562427	33562427	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70904798	70904798	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70904798	70904798	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100235229	100235229	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100235229	100235229	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119300944	119300944	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADPRH	141	broad.mit.edu	37	3	119300944	119300944	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26721658	26721658	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26721658	26721658	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSS	159	broad.mit.edu	37	1	244574491	244574491	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSS	159	broad.mit.edu	37	1	244600114	244600114	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADSS	159	broad.mit.edu	37	1	244600114	244600114	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74369008	74369008	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86702201	86702201	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86702201	86702201	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230846667	230846667	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230846667	230846667	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109669074	109669074	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109669074	109669074	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35035424	35035424	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35035424	35035424	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129053373	129053373	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129053373	129053373	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878562	32878562	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878562	32878562	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27876408	27876408	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27876408	27876408	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105412420	105412420	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159035667	159035667	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159042975	159042975	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159035667	159035667	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159042975	159042975	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIRE	326	broad.mit.edu	37	21	45706343	45706343	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK3	50808	broad.mit.edu	37	9	4712780	4712780	+	3'UTR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77784057	77784057	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86266326	86266326	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86266326	86266326	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33205041	33205041	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33205041	33205041	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117139580	117139580	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117139580	117139580	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134261814	134261814	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134261814	134261814	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1D1	6718	broad.mit.edu	37	7	137792425	137792425	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74283925	74283925	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74283925	74283925	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105271017	105271017	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105271017	105271017	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125836787	125836787	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112235926	112235926	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH2	217	broad.mit.edu	37	12	112235926	112235926	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDOA	226	broad.mit.edu	37	16	30081108	30081108	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10B	144245	broad.mit.edu	37	12	38710504	38710504	+	5'Flank	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG12	79087	broad.mit.edu	37	22	50304192	50304192	+	Missense_Mutation	SNP	C	T	T	rs117687848	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129815942	129815942	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG2	85365	broad.mit.edu	37	9	101980430	101980430	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG2	85365	broad.mit.edu	37	9	101980430	101980430	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43921137	43921137	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH8	91801	broad.mit.edu	37	11	107424656	107424661	+	In_Frame_Del	DEL	ACCATG	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH8	91801	broad.mit.edu	37	11	107424656	107424661	+	In_Frame_Del	DEL	ACCATG	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45938974	45938974	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202483915	202483915	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202483915	202483915	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38471793	38471793	+	Missense_Mutation	SNP	C	A	A	rs145380938		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38471793	38471793	+	Missense_Mutation	SNP	C	A	A	rs145380938		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY1A	276	broad.mit.edu	37	1	104297213	104297213	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY1A	276	broad.mit.edu	37	1	104297213	104297213	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77274520	77274521	+	Intron	DNP	GG	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77274520	77274521	+	Intron	DNP	GG	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101771329	101771329	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101771329	101771329	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95646807	95646807	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95646807	95646807	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37433905	37433905	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451815	37451815	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37433905	37433905	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451815	37451815	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD32	84250	broad.mit.edu	37	5	94014519	94014519	+	Nonsense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD32	84250	broad.mit.edu	37	5	94014519	94014519	+	Nonsense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55406997	55406997	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55406997	55406997	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261202	21261202	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261202	21261202	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22248963	22248963	+	Missense_Mutation	SNP	G	A	A	rs150652958		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22257906	22257906	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22248963	22248963	+	Missense_Mutation	SNP	G	A	A	rs150652958		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2B1	163	broad.mit.edu	37	17	34009643	34009643	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83349376	83349376	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3D1	8943	broad.mit.edu	37	19	2127179	2127179	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115346543	115346543	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115346543	115346543	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47426307	47426307	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAF	369	broad.mit.edu	37	X	47426307	47426307	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144314076	144314076	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144525526	144525526	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144314076	144314076	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144525526	144525526	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24889599	24889599	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24889599	24889599	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560197	32560198	+	Missense_Mutation	DNP	CG	TC	TC			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560197	32560198	+	Missense_Mutation	DNP	CG	TC	TC			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131785810	131785810	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35730929	35730929	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936699	2936699	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2936699	2936699	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH1	427	broad.mit.edu	37	8	17920780	17920780	+	Intron	SNP	A	T	T	rs6993962	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH1	427	broad.mit.edu	37	8	17920780	17920780	+	Intron	SNP	A	T	T	rs6993962	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH2	56624	broad.mit.edu	37	10	51978271	51978271	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB3	51130	broad.mit.edu	37	2	53943863	53943863	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142261	177142261	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142261	177142261	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101095256	101095256	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101095256	101095256	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927497	176927497	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176998824	176998824	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927497	176927497	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176998824	176998824	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH8	84913	broad.mit.edu	37	2	85991289	85991289	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATOH8	84913	broad.mit.edu	37	2	85991289	85991289	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113479731	113479731	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113479731	113479731	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160146346	160146346	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160146346	160146346	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28906166	28906166	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28906166	28906166	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10428302	10428302	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10428302	10428302	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40647249	40647249	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A1	535	broad.mit.edu	37	17	40647249	40647249	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124241308	124241308	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124241308	124241308	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0B	533	broad.mit.edu	37	1	44441771	44441771	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0B	533	broad.mit.edu	37	1	44441771	44441771	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0D1	9114	broad.mit.edu	37	16	67487285	67487285	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77245130	77245130	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77245130	77245130	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42571135	42571135	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42571135	42571135	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26043257	26043257	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116930936	116930936	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	116930936	116930936	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2	6311	broad.mit.edu	37	12	111922960	111922960	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2	6311	broad.mit.edu	37	12	111922960	111922960	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKC	6795	broad.mit.edu	37	19	57743783	57743783	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168726315	168726315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168726315	168726315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11026641	11026641	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049684	11049684	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11026641	11026641	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049684	11049684	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69703643	69703643	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69759227	69759227	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69703643	69703643	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69759227	69759227	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229615	160229615	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160294973	160294973	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160229615	160229615	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160294973	160294973	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27147256	27147256	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27147256	27147256	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56536210	56536210	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56536304	56536304	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56536210	56536210	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56536304	56536304	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156618448	156618448	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156618448	156618448	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60773198	60773198	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60773198	60773198	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136590641	136590641	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136590641	136590641	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27603137	27603137	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27603137	27603137	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7862864	7862864	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD9	65980	broad.mit.edu	37	5	887360	887360	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105695089	105695089	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1L	84312	broad.mit.edu	37	14	36337046	36337046	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1L	84312	broad.mit.edu	37	14	36337046	36337046	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108042981	108042981	+	Splice_Site	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108042981	108042981	+	Splice_Site	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD12	84464	broad.mit.edu	37	16	3634695	3634695	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100617441	100617441	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100617441	100617441	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103291028	103291028	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTRC	8945	broad.mit.edu	37	10	103291028	103291028	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf75	56935	broad.mit.edu	37	11	93268815	93268815	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf75	56935	broad.mit.edu	37	11	93268815	93268815	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82645123	82645123	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82645123	82645123	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91347339	91347339	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91347339	91347339	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82871004	82871004	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82871004	82871004	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95934127	95934127	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95934127	95934127	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922547	24922547	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922547	24922547	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90138748	90138748	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf42	90381	broad.mit.edu	37	15	90138748	90138748	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332285	100332285	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332285	100332285	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf63	55731	broad.mit.edu	37	17	27093631	27093631	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf63	55731	broad.mit.edu	37	17	27093631	27093631	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645329	13645329	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13645329	13645329	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL2	165257	broad.mit.edu	37	2	119914654	119914654	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL2	165257	broad.mit.edu	37	2	119914654	119914654	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12815806	12815806	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12815806	12815806	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf200	644997	broad.mit.edu	37	1	9713652	9713652	+	3'UTR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf200	644997	broad.mit.edu	37	1	9714056	9714056	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf25	81627	broad.mit.edu	37	1	185106753	185106753	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf25	81627	broad.mit.edu	37	1	185106753	185106753	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178483316	178483316	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf52	148423	broad.mit.edu	37	1	85725280	85725280	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf52	148423	broad.mit.edu	37	1	85725280	85725280	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226176062	226176062	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf55	163859	broad.mit.edu	37	1	226176062	226176062	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf56	54964	broad.mit.edu	37	1	151020974	151020974	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf56	54964	broad.mit.edu	37	1	151020974	151020974	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172558355	172558355	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172558355	172558355	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20269349	20269349	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20269349	20269349	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56728434	56728434	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD2	25966	broad.mit.edu	37	21	43338921	43338921	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27B	408029	broad.mit.edu	37	2	132558343	132558343	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf57	165100	broad.mit.edu	37	2	232457748	232457748	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf57	165100	broad.mit.edu	37	2	232457748	232457748	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63401728	63401728	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63401728	63401728	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf75	54859	broad.mit.edu	37	3	47552816	47552816	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf39	152756	broad.mit.edu	37	4	165878351	165878351	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf39	152756	broad.mit.edu	37	4	165878351	165878351	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf7	260436	broad.mit.edu	37	4	71098640	71098640	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf7	260436	broad.mit.edu	37	4	71098640	71098640	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf35	133383	broad.mit.edu	37	5	56212811	56212811	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf130	221443	broad.mit.edu	37	6	41036604	41036604	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf130	221443	broad.mit.edu	37	6	41036604	41036604	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88138333	88138333	+	Intron	SNP	C	A	A	rs79821877		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88138333	88138333	+	Intron	SNP	C	A	A	rs79821877		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31736734	31736734	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31736734	31736734	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42971888	42971888	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42971888	42971888	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28B	221960	broad.mit.edu	37	7	6862915	6862915	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28B	221960	broad.mit.edu	37	7	6862915	6862915	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120687058	120687058	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120687058	120687058	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39341479	39341479	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39341479	39341479	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf64	84267	broad.mit.edu	37	9	86559805	86559805	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf64	84267	broad.mit.edu	37	9	86559805	86559805	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15678675	15678675	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15678675	15678675	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140901162	140901162	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140972591	140972591	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140972591	140972591	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181546938	181546938	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181724329	181724329	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181546938	181546938	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181724329	181724329	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1261227	1261227	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1261227	1261227	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81978919	81978919	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81978919	81978919	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1969334	1969334	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1969334	1969334	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062183	86062183	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86062183	86062183	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB1	793	broad.mit.edu	37	8	91094157	91094157	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134552466	134552466	+	Translation_Start_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134552466	134552466	+	Translation_Start_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7805036	7805036	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7805036	7805036	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN13	92291	broad.mit.edu	37	2	30955326	30955326	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN13	92291	broad.mit.edu	37	2	30955326	30955326	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN5	726	broad.mit.edu	37	11	76804648	76804658	+	Intron	DEL	TGTGTCTGTCA	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75678809	75678809	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75685421	75685421	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75678809	75678809	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25261485	25261485	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25261485	25261485	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2236767	2236767	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBARA1	10367	broad.mit.edu	37	10	74311201	74311201	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC112	153733	broad.mit.edu	37	5	114611088	114611088	+	Missense_Mutation	SNP	C	A	A	rs141845700		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC112	153733	broad.mit.edu	37	5	114611088	114611088	+	Missense_Mutation	SNP	C	A	A	rs141845700		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58314662	58314662	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC113	29070	broad.mit.edu	37	16	58314662	58314662	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC138	165055	broad.mit.edu	37	2	109432344	109432344	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC138	165055	broad.mit.edu	37	2	109432344	109432344	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42799619	42799619	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC13	152206	broad.mit.edu	37	3	42799619	42799619	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC33	80125	broad.mit.edu	37	15	74572176	74572176	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180351861	180351861	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86098511	86098511	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86098511	86098511	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55549736	55549736	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55549736	55549736	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91755746	91755746	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91755746	91755746	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74516860	74516860	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74516860	74516860	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7559189	7559189	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7559189	7559189	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158151904	158151904	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152205	158152205	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158151904	158151904	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD247	919	broad.mit.edu	37	1	167404823	167404823	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72469524	72469524	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300A	11314	broad.mit.edu	37	17	72477850	72477850	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135730460	135730460	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135730460	135730460	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8A	925	broad.mit.edu	37	2	87017643	87017643	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD8A	925	broad.mit.edu	37	2	87017643	87017643	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC14C	168448	broad.mit.edu	37	7	48965370	48965370	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137625169	137625169	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137665111	137665111	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137625169	137625169	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227219083	227219083	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227219083	227219083	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64606195	64606195	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64606195	64606195	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747207	19747207	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747207	19747207	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73330515	73330515	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73330515	73330515	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58567503	58567503	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58567503	58567503	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25727729	25727729	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25727729	25727729	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63492141	63492141	+	Intron	SNP	G	T	T	rs145943007	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63511299	63511299	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63492141	63492141	+	Intron	SNP	G	T	T	rs145943007	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63511299	63511299	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851501	61851501	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH8	1006	broad.mit.edu	37	16	61851501	61851501	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915967	26915967	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915967	26915967	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205499522	205499522	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205499522	205499522	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123170627	123170627	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123170627	123170627	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP3	80279	broad.mit.edu	37	17	46050868	46050868	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP3	80279	broad.mit.edu	37	17	46050868	46050868	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15809791	15809791	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15809791	15809791	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34854816	34854816	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34854816	34854816	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46765042	46765042	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46765042	46765042	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135940095	135940095	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135940095	135940095	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104070211	104070211	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104070211	104070211	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPK	64105	broad.mit.edu	37	5	64824289	64824289	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPK	64105	broad.mit.edu	37	5	64824289	64824289	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56883961	56883961	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134278166	134278166	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP63	80254	broad.mit.edu	37	3	134278166	134278166	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55880525	55880525	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55880525	55880525	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55905755	55905755	+	Intron	SNP	G	T	T	rs141262535	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50873174	50873174	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50873174	50873174	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6181093	6181093	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53342725	53342725	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53342725	53342725	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L2	1117	broad.mit.edu	37	1	111778693	111778693	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHI3L2	1117	broad.mit.edu	37	1	111778693	111778693	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	382518	382518	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	382518	382518	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184104632	184104632	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184104632	184104632	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61982276	61982276	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233406159	233406159	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233406159	233406159	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST2	9435	broad.mit.edu	37	3	142841221	142841221	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24604116	24604116	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST9	83539	broad.mit.edu	37	18	24604116	24604116	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIZ1	25792	broad.mit.edu	37	9	130941545	130941545	+	Missense_Mutation	SNP	C	G	G	rs111464781		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIZ1	25792	broad.mit.edu	37	9	130941545	130941545	+	Missense_Mutation	SNP	C	G	G	rs111464781		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106633401	106633401	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP4	10970	broad.mit.edu	37	12	106633401	106633401	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC2L	154790	broad.mit.edu	37	7	139219033	139219033	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC2L	154790	broad.mit.edu	37	7	139219033	139219033	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4D	338339	broad.mit.edu	37	12	8665071	8665071	+	5'Flank	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4D	338339	broad.mit.edu	37	12	8665071	8665071	+	5'Flank	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154509358	154509358	+	Splice_Site	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154509358	154509358	+	Splice_Site	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC4	25932	broad.mit.edu	37	1	25166708	25166708	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73768231	73768231	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73768231	73768231	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65472593	65472593	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140167652	140167652	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47939673	47939673	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47939673	47939673	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912077	150912077	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912077	150912077	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57937712	57937712	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996582	57996582	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57937712	57937712	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996582	57996582	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87641334	87641334	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87641334	87641334	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135078627	135078627	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135078627	135078627	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41422935	41422935	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41422935	41422935	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99941253	99941253	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99945012	99945012	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99941253	99941253	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	99945012	99945012	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76587726	76587726	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76587726	76587726	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281944	125281944	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530309	125530309	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281944	125281944	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125530309	125530309	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103364182	103364182	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103467972	103467972	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103467972	103467972	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33153629	33153629	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75801183	75801183	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75828759	75828759	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75893229	75893229	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75899098	75899098	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75801183	75801183	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75828759	75828759	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75893229	75893229	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75899098	75899098	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71703963	71703963	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71703963	71703963	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121220515	121220515	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121220515	121220515	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101829430	101829430	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101822338	101822338	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101829430	101829430	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105813757	105813757	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105813757	105813757	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61943449	61943449	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139609343	139609343	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139626004	139626004	+	Intron	DEL	T	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139626004	139626004	+	Intron	DEL	T	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86482819	86482819	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189859297	189859297	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189859297	189859297	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110863998	110863998	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110863998	110863998	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189929366	189929366	+	Silent	SNP	G	T	T	rs145258293		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189929366	189929366	+	Silent	SNP	G	T	T	rs145258293		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47532851	47532851	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238256573	238256573	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238256573	238256573	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130313158	130313158	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130313158	130313158	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL8A2	1296	broad.mit.edu	37	1	36563472	36563472	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL8A2	1296	broad.mit.edu	37	1	36563472	36563472	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61453144	61453144	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	319982	319982	+	3'UTR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	319982	319982	+	3'UTR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47685848	47685848	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47685848	47685848	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129914847	129914847	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211467186	211467186	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211467186	211467186	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125528162	125528162	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125528162	125528162	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8608445	8608445	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8608820	8608820	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8608445	8608445	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43910948	43910948	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49806202	49806202	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49806202	49806202	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153925960	153925960	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153925960	153925960	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2808659	2808659	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2966295	2966296	+	Intron	DNP	TG	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2808659	2808659	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2966295	2966296	+	Intron	DNP	TG	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34291146	34291146	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113253923	113253923	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113313889	113313889	+	Intron	DEL	A	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113504881	113504881	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113529424	113529424	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113988231	113988231	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113253923	113253923	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113504881	113504881	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113529424	113529424	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113988231	113988231	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68030483	68030483	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68030483	68030483	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47A6	728062	broad.mit.edu	37	X	120094332	120094332	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT47A6	728062	broad.mit.edu	37	X	120094332	120094332	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126694436	126694436	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126694436	126694436	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56078492	56078492	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56078492	56078492	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11022998	11022998	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11111231	11111231	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11022998	11022998	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11111231	11111231	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRB2	440387	broad.mit.edu	37	16	75238132	75238132	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTRB2	440387	broad.mit.edu	37	16	75238132	75238132	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101892232	101892232	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL6	6372	broad.mit.edu	37	4	74702735	74702735	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL6	6372	broad.mit.edu	37	4	74702735	74702735	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50788335	50788335	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50788335	50788335	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994002	143994002	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994002	143994002	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72374759	72374759	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219676937	219676937	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219676937	219676937	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42028060	42028060	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42028060	42028060	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2S1	29785	broad.mit.edu	37	19	41707397	41707397	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2W1	54905	broad.mit.edu	37	7	1026291	1026291	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99310928	99310928	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47395930	47395930	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47395930	47395930	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15636084	15636084	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15636084	15636084	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158286961	158286961	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27841106	27841106	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27841106	27841106	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57611039	57611039	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57611099	57611099	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57611039	57611039	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57611099	57611099	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39375244	39375244	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39375244	39375244	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72420455	72420455	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBNL	28988	broad.mit.edu	37	7	44098023	44098023	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885855	88885855	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885855	88885855	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31287205	31287205	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14976896	14976896	+	Intron	SNP	A	G	G	rs139210084	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908255	103908255	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908255	103908255	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15983175	15983175	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI2	84301	broad.mit.edu	37	1	15983175	15983175	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61864590	61864590	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61864590	61864590	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23018528	23018528	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX53	168400	broad.mit.edu	37	X	23018528	23018528	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169348525	169348525	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169348525	169348525	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66063763	66063763	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	66063763	66063763	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185986600	185986600	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185986600	185986600	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186038373	186038373	+	5'UTR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137151659	137151659	+	Splice_Site	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137172361	137172361	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137151659	137151659	+	Splice_Site	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137172361	137172361	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50163554	50163554	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50146203	50146203	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50163554	50163554	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHTKD1	55526	broad.mit.edu	37	10	12150040	12150040	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHTKD1	55526	broad.mit.edu	37	10	12150040	12150040	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX30	22907	broad.mit.edu	37	3	47882439	47882439	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX30	22907	broad.mit.edu	37	3	47882439	47882439	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140905600	140905600	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140905600	140905600	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61537545	61537545	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	355909	355909	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	355909	355909	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK3	27122	broad.mit.edu	37	11	11985955	11985955	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK3	27122	broad.mit.edu	37	11	11985955	11985955	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1513999	1513999	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170594720	170594720	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41222807	41222807	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124337430	124337430	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124337430	124337430	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT2	10655	broad.mit.edu	37	9	1056129	1056129	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT2	10655	broad.mit.edu	37	9	1056129	1056129	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118468880	118468880	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118468880	118468880	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124364246	124364246	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124364246	124364246	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21747563	21747563	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20986464	20986464	+	Intron	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20994324	20994324	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21122843	21122843	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20986464	20986464	+	Intron	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20994324	20994324	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21122843	21122843	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13752425	13752425	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13752425	13752425	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38758175	38758175	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38758175	38758175	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11511684	11511684	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11511684	11511684	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI1	27019	broad.mit.edu	37	9	34506560	34506560	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72310218	72310218	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72310218	72310218	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB12	54788	broad.mit.edu	37	10	74095797	74095797	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6706000	6706000	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6706000	6706000	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230453040	230453040	+	Intron	SNP	C	A	A	rs72987944	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNER	92737	broad.mit.edu	37	2	230453040	230453040	+	Intron	SNP	C	A	A	rs72987944	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31383152	31383152	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31383152	31383152	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507295	169507295	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169188664	169188664	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507295	169507295	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51350248	51350249	+	Intron	DNP	GG	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51350248	51350249	+	Intron	DNP	GG	TT	TT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63084481	63084481	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63084481	63084481	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99520151	99520151	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99520213	99520213	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99520151	99520151	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99520213	99520213	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21768283	21768283	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21768283	21768283	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68010643	68010643	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP3	64180	broad.mit.edu	37	16	68010643	68010643	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP8	54878	broad.mit.edu	37	15	65790065	65790065	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168670292	168670292	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168670292	168670292	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35189901	35189901	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35189901	35189901	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105404918	105404918	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105404918	105404918	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784629	9784629	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784629	9784629	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29043956	29043956	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56472157	56472157	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56437106	56437106	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56472157	56472157	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX1	1840	broad.mit.edu	37	12	113515246	113515246	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX1	1840	broad.mit.edu	37	12	113515246	113515246	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103128358	103128358	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103128358	103128358	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80583596	80583596	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80583596	80583596	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795056	71795056	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795292	71795292	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71827833	71827833	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795056	71795056	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795292	71795292	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71827833	71827833	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207528121	207528121	+	Splice_Site	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207528121	207528121	+	Splice_Site	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131761569	131761569	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131761569	131761569	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	69157604	69157604	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	69157604	69157604	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406403	106406403	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106406403	106406403	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB7	84455	broad.mit.edu	37	1	63999396	63999396	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38352578	38352578	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR2	1959	broad.mit.edu	37	10	64575716	64575716	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR2	1959	broad.mit.edu	37	10	64575716	64575716	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36381063	36381063	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36381063	36381063	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141557553	141557553	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141557553	141557553	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37382025	37382025	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37382025	37382025	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMD	2010	broad.mit.edu	37	X	153609287	153609287	+	Silent	SNP	G	A	A	rs151074632	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14866330	14866330	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14866330	14866330	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71495425	71495425	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71495425	71495425	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120631581	120631581	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120631581	120631581	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46611777	46611777	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46611777	46611777	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5416157	5416157	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5416157	5416157	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	112003752	112003752	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPCAM	4072	broad.mit.edu	37	2	47604031	47604031	+	Intron	SNP	G	A	A	rs137997441	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89462154	89462154	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89480412	89480412	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89480412	89480412	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222298795	222298795	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222298795	222298795	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66242818	66242818	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66535351	66535351	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66242818	66242818	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97185196	97185196	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97185196	97185196	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23234356	23234356	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23234356	23234356	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100417356	100417356	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142566456	142566456	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142566456	142566456	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43469133	43469133	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43469133	43469133	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1519478	1519478	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESD	2098	broad.mit.edu	37	13	47355625	47355625	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESD	2098	broad.mit.edu	37	13	47355625	47355625	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54281167	54281167	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54281167	54281167	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	217241628	217241628	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158531731	158531731	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158531731	158531731	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157062424	157062424	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157062424	157062424	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	73052880	73052880	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6B	23233	broad.mit.edu	37	2	73052880	73052880	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66053948	66053948	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	65612314	65612314	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66053948	66053948	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL3	9002	broad.mit.edu	37	19	17000732	17000732	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154128036	154128036	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADS1	3992	broad.mit.edu	37	11	61580914	61580914	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109159083	109159083	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109159083	109159083	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744474	25744474	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744474	25744474	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520903	131520903	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520903	131520903	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124B	79843	broad.mit.edu	37	2	225265637	225265637	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89772323	89772323	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89772323	89772323	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187077232	187077232	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187077232	187077232	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175A	84142	broad.mit.edu	37	4	84406124	84406124	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM199X	139231	broad.mit.edu	37	X	103420219	103420219	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62260995	62260995	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62260995	62260995	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58619932	58619932	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58619932	58619932	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110584388	110584388	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40A	85369	broad.mit.edu	37	1	110584388	110584388	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068275	190068275	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068275	190068275	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70A	55026	broad.mit.edu	37	X	119407282	119407282	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM74A3	728495	broad.mit.edu	37	9	40716356	40716356	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM74A3	728495	broad.mit.edu	37	9	40716356	40716356	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40702903	40702903	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78A	286336	broad.mit.edu	37	9	134151627	134151627	+	5'UTR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM81A	145773	broad.mit.edu	37	15	59808843	59808843	+	Splice_Site	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM81A	145773	broad.mit.edu	37	15	59808843	59808843	+	Splice_Site	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242402803	242402803	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242402803	242402803	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187627867	187627868	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187627867	187627868	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92620173	92620173	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92620173	92620173	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127597672	127597672	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127727745	127727745	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127730885	127730885	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127597672	127597672	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127727745	127727745	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127730885	127730885	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936573	15936573	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15936573	15936573	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37093317	37093317	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37119170	37119170	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO47	494188	broad.mit.edu	37	17	37119170	37119170	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW2	26190	broad.mit.edu	37	9	123527229	123527229	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40411754	40411754	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161561213	161561213	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737419	157737419	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737419	157737419	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157551201	157551201	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157551201	157551201	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157497735	157497735	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157497735	157497735	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125109517	125109517	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125109517	125109517	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184711	19184711	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184711	19184711	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155487128	155487128	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155487128	155487128	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF11	2256	broad.mit.edu	37	17	7324973	7324973	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF11	2256	broad.mit.edu	37	17	7324973	7324973	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137715045	137715045	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137715045	137715045	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102378993	102378993	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102378993	102378993	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF20	26281	broad.mit.edu	37	8	16850805	16850805	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFRL1	53834	broad.mit.edu	37	4	1018108	1018108	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFRL1	53834	broad.mit.edu	37	4	1018108	1018108	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34349242	34349242	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34349242	34349242	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76023009	76023009	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FILIP1	27145	broad.mit.edu	37	6	76023009	76023009	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277375	152277375	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282083	152282083	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277375	152277375	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282083	152282083	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89084132	89084132	+	RNA	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84605324	84605324	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128496779	128496779	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128496779	128496779	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28636255	28636255	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28636255	28636255	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLYWCH2	114984	broad.mit.edu	37	16	2946481	2946482	+	Missense_Mutation	DNP	GG	TT	TT	rs145971095		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240255646	240255646	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240458064	240458065	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240519039	240519039	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240458064	240458065	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240519039	240519039	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50045837	50045837	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50045837	50045837	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171240301	171240301	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171240301	171240301	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNBP1L	54874	broad.mit.edu	37	1	94009626	94009626	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89429916	89429916	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89431572	89431573	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89429916	89429916	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89431572	89431573	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2975520	2975521	+	Intron	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2975520	2975521	+	Intron	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29652274	29652276	+	3'UTR	DEL	CAT	-	-	rs137885599		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD1	79981	broad.mit.edu	37	6	168458120	168458120	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85905627	85905627	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85905627	85905627	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37744666	37744666	+	Silent	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37746032	37746032	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37746032	37746032	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12734443	12734443	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12734443	12734443	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48584628	48584628	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48584628	48584628	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127238849	127238849	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL1	11167	broad.mit.edu	37	3	120129820	120129820	+	Missense_Mutation	SNP	C	T	T	rs149509930		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29523647	29523647	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29523647	29523647	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252655	46252655	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252655	46252655	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161118900	161118900	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161118900	161118900	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161495054	161495054	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161495054	161495054	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88419821	88419821	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88419821	88419821	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11454396	11454396	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11454396	11454396	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8105983	8105983	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8105983	8105983	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81586172	81586172	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81586172	81586172	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89523826	89523826	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89523826	89523826	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34128537	34128537	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34128537	34128537	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120586188	120586188	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120586188	120586188	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216293	55216293	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55216293	55216293	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91964086	91964086	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172163026	172163026	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172163026	172163026	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150174417	150174417	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150174417	150174417	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78512063	78512063	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604139	90604139	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604139	90604139	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121768935	121768935	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121768935	121768935	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151228660	151228660	+	Intron	SNP	T	A	A	rs140062205	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRB	2743	broad.mit.edu	37	4	158058029	158058029	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRB	2743	broad.mit.edu	37	4	158058029	158058029	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58604550	58604550	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605833	58605833	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58604550	58604550	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605833	58605833	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52417530	52417530	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG2	54331	broad.mit.edu	37	14	52417530	52417530	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL1	2794	broad.mit.edu	37	6	30520233	30520233	+	Intron	SNP	C	A	A	rs112012560		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL1	2794	broad.mit.edu	37	6	30520233	30520233	+	Intron	SNP	C	A	A	rs112012560		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA6L1	283767	broad.mit.edu	37	15	22742719	22742719	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167025200	167025200	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132439938	132439938	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132439938	132439938	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176556078	176556078	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176556078	176556078	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46979705	46979705	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR110	266977	broad.mit.edu	37	6	46979705	46979705	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47646847	47646847	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47646847	47646847	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428122	135428122	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135443808	135443808	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135428122	135428122	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135443808	135443808	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22426109	22426109	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22426109	22426109	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100378723	100378723	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100378723	100378723	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR135	64582	broad.mit.edu	37	14	59930621	59930621	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR135	64582	broad.mit.edu	37	14	59930621	59930621	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131487640	131487640	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131487640	131487640	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167571250	167571250	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167571250	167571250	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274539	51274539	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274539	51274539	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124386510	124386510	+	3'UTR	SNP	T	C	C	rs113476925		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124386510	124386510	+	3'UTR	SNP	T	C	C	rs113476925		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR55	9290	broad.mit.edu	37	2	231775240	231775240	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR55	9290	broad.mit.edu	37	2	231775240	231775240	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR83	10888	broad.mit.edu	37	11	94134234	94134234	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR83	10888	broad.mit.edu	37	11	94134234	94134234	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117128061	117128061	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117128061	117128061	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165430218	165430218	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165430218	165430218	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37901263	37901263	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10103950	10103950	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10103950	10103950	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94377138	94377138	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94377138	94377138	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42526523	42526523	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK5	2901	broad.mit.edu	37	19	42526523	42526523	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2C	2905	broad.mit.edu	37	17	72842195	72842195	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2C	2905	broad.mit.edu	37	17	72842195	72842195	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66957418	66957418	+	Intron	SNP	A	T	T	rs150871747	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480400	146480400	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480400	146480400	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029651	34029651	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029651	34029651	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173167	126173167	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173167	126173167	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMA	284110	broad.mit.edu	37	17	38122753	38122753	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMA	284110	broad.mit.edu	37	17	38122753	38122753	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52700875	52700875	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52700875	52700875	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2A2	2958	broad.mit.edu	37	15	59944243	59944243	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1B	2979	broad.mit.edu	37	6	42162345	42162345	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1B	2979	broad.mit.edu	37	6	42162345	42162345	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPA	2993	broad.mit.edu	37	4	145020716	145020716	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5336911	5336911	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5336911	5336911	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153227748	153227748	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153227748	153227748	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121363563	121363563	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121363563	121363563	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868900	18868900	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18868900	18868900	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37268227	37268227	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	40999785	40999785	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	40999785	40999785	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43436451	43436451	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43447307	43447307	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43436451	43436451	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43447307	43447307	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124692485	124692485	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63987027	63987027	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63987027	63987027	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERPUD2	64224	broad.mit.edu	37	7	35709856	35709856	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERPUD2	64224	broad.mit.edu	37	7	35709856	35709856	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81359163	81359163	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81388081	81388081	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81372118	81372118	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81388081	81388081	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100118631	100118631	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100118631	100118631	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222713410	222713410	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222713410	222713410	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234750371	234750372	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234750371	234750372	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB2	3120	broad.mit.edu	37	6	32725741	32725741	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185959564	185959564	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186114898	186114898	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185959564	185959564	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186114898	186114898	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162910960	162910960	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76452274	76452274	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76452274	76452274	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1L2	144983	broad.mit.edu	37	13	53217055	53217055	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1L2	144983	broad.mit.edu	37	13	53217055	53217055	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA3	220988	broad.mit.edu	37	2	178080660	178080660	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA3	220988	broad.mit.edu	37	2	178080660	178080660	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27181480	27181480	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27181480	27181480	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB9	3219	broad.mit.edu	37	17	46700182	46700182	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC6	3223	broad.mit.edu	37	12	54423739	54423739	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC6	3223	broad.mit.edu	37	12	54423739	54423739	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148863150	148863150	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148863150	148863150	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3B1	9953	broad.mit.edu	37	17	14248435	14248435	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3B1	9953	broad.mit.edu	37	17	14248435	14248435	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119964605	119964605	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119987821	119987821	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119964605	119964605	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119987821	119987821	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22155852	22155852	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113816546	113816546	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L2	83982	broad.mit.edu	37	14	94596008	94596008	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI27L2	83982	broad.mit.edu	37	14	94596008	94596008	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129231391	129231391	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT122	55764	broad.mit.edu	37	3	129231391	129231391	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23358629	23358629	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23387442	23387442	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111663617	111663617	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18172011	18172011	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18172013	18172013	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81585042	81585042	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL16	3603	broad.mit.edu	37	15	81585042	81585042	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28515060	28515060	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28515060	28515060	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166926196	166926196	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43922293	43922293	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43922293	43922293	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120608099	120608099	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120608099	120608099	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234090908	234090908	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL4	3641	broad.mit.edu	37	9	5231684	5231684	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL4	3641	broad.mit.edu	37	9	5231684	5231684	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59947353	59947353	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS5	80789	broad.mit.edu	37	11	62415695	62415695	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS5	80789	broad.mit.edu	37	11	62415695	62415695	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF6	3664	broad.mit.edu	37	1	209968832	209968832	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF6	3664	broad.mit.edu	37	1	209968832	209968832	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISL2	64843	broad.mit.edu	37	15	76629329	76629329	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457270	42457270	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42457270	42457270	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52285378	52285378	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52285378	52285378	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182392196	182392196	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182322938	182322938	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54812728	54812728	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15590598	15590598	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15628598	15628598	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688754	15688754	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15590598	15590598	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15628598	15628598	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688754	15688754	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31309152	31309152	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31309152	31309152	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31388256	31388256	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31388256	31388256	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52812530	52812530	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52812530	52812530	+	Intron	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7614178	7614178	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226822507	226822507	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226822507	226822507	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4718485	4718485	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4718485	4718485	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24427344	24427344	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24427344	24427344	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27062220	27062220	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27062220	27062220	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JKAMP	51528	broad.mit.edu	37	14	59970757	59970757	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JKAMP	51528	broad.mit.edu	37	14	59970757	59970757	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156232098	156232098	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156232098	156232098	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110754218	110754218	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110774788	110774788	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110754218	110754218	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626742	49626742	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNG1	3755	broad.mit.edu	37	20	49626742	49626742	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49949578	49949578	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH3	23416	broad.mit.edu	37	12	49949578	49949578	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP3	30818	broad.mit.edu	37	2	96040851	96040851	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP3	30818	broad.mit.edu	37	2	96040851	96040851	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88658607	88658607	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88792843	88792843	+	5'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88658607	88658607	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88792843	88792843	+	5'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK16	83795	broad.mit.edu	37	6	39290313	39290313	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK4	50801	broad.mit.edu	37	11	64064883	64064883	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK4	50801	broad.mit.edu	37	11	64064883	64064883	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78799166	78799166	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78799166	78799166	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62044883	62044883	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62073809	62073809	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076556	62076556	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62044883	62044883	+	Silent	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62073809	62073809	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076556	62076556	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196197364	196197364	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196300263	196300263	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196197364	196197364	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196300263	196300263	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD14	65987	broad.mit.edu	37	11	77727720	77727720	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD14	65987	broad.mit.edu	37	11	77727720	77727720	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176686	44176686	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44449622	44449622	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176686	44176686	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44449622	44449622	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121882033	121882033	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121882033	121882033	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7013674	7013674	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142640545	142640546	+	Intron	DNP	CT	TA	TA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650887	142650887	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142640545	142640546	+	Intron	DNP	CT	TA	TA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650887	142650887	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24598486	24598486	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24598486	24598486	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22659606	22659606	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22659606	22659606	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0649	9858	broad.mit.edu	37	9	138378101	138378101	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0649	9858	broad.mit.edu	37	9	138378101	138378101	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118284406	118284406	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118284406	118284406	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180885793	180885793	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1614	57710	broad.mit.edu	37	1	180885793	180885793	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1949	170954	broad.mit.edu	37	6	30652408	30652408	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73961382	73961382	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73961382	73961382	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21036057	21036057	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF18B	146909	broad.mit.edu	37	17	43004447	43004447	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241706459	241706459	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901354	51901354	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901354	51901354	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55247736	55247736	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55247736	55247736	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158063219	158063219	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158063219	158063219	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70413071	70413071	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70413071	70413071	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL22	84861	broad.mit.edu	37	22	20812279	20812279	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL22	84861	broad.mit.edu	37	22	20812279	20812279	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183225911	183225911	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL6	89857	broad.mit.edu	37	3	183225911	183225911	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330233	51330233	+	Missense_Mutation	SNP	G	T	T	rs7247190		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330233	51330233	+	Missense_Mutation	SNP	G	T	T	rs7247190		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRAQ1	129285	broad.mit.edu	37	2	48734332	48734332	+	Intron	DEL	T	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733826	152733826	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733826	152733826	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRIT1	889	broad.mit.edu	37	7	91830045	91830045	+	3'UTR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39079200	39079200	+	3'UTR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39079200	39079200	+	3'UTR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53167222	53167222	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53167222	53167222	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52710627	52710627	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52710627	52710627	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-7	386675	broad.mit.edu	37	21	46021721	46021721	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768326	31768326	+	5'Flank	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768509	31768509	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768326	31768326	+	5'Flank	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768509	31768509	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914063	31914063	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP4-11	653240	broad.mit.edu	37	17	39273977	39273977	+	3'UTR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153137995	153137995	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153137995	153137995	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7012196	7012196	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7012196	7012196	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129470172	129470172	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129470172	129470172	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21416983	21416983	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21416983	21416983	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60888802	60888802	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107667262	107667262	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107667262	107667262	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183196112	183196113	+	Intron	INS	-	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183196112	183196113	+	Intron	INS	-	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBX2	85474	broad.mit.edu	37	2	74725064	74725064	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152759841	152759841	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152759841	152759841	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCNL1	401562	broad.mit.edu	37	9	139877834	139877834	+	5'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169689812	169689812	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169689812	169689812	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11213193	11213193	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEF1	51176	broad.mit.edu	37	4	109010079	109010079	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66083707	66083707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66083707	66083707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27395083	27395083	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27395083	27395083	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202245410	202245410	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202245410	202245410	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48958534	48958534	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48653099	48653099	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO1	84894	broad.mit.edu	37	15	77907260	77907260	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO1	84894	broad.mit.edu	37	15	77907260	77907260	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28150837	28150837	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90534391	90534391	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49497771	49497771	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886333	33886333	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886333	33886333	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76407431	76407431	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45647350	45647350	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106824641	106824641	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100302640	100302640	broad.mit.edu	37	3	106824641	106824641	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50466697	50466697	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50466697	50466697	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49597803	49597803	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49597803	49597803	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441666	441666	broad.mit.edu	37	10	42848436	42848436	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932993	148932993	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148932993	148932993	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78212251	78212251	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78212251	78212251	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646762	646762	broad.mit.edu	37	7	29727032	29727032	+	5'Flank	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50378043	50378043	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646813	646813	broad.mit.edu	37	11	50378043	50378043	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91816258	91816258	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC723972	723972	broad.mit.edu	37	15	35529688	35529688	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC723972	723972	broad.mit.edu	37	15	35529688	35529688	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728190	728190	broad.mit.edu	37	10	88971904	88971904	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728190	728190	broad.mit.edu	37	10	88971904	88971904	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22764308	22764308	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22764308	22764308	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82447508	82447508	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39985681	39985681	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39985681	39985681	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772348	99772348	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99772348	99772348	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140995750	140995750	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141031879	141031879	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459809	141459809	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141526927	141526927	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140995750	140995750	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459809	141459809	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141526927	141526927	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142567892	142567892	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170112576	170112576	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170112576	170112576	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99798554	99798554	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC28	123355	broad.mit.edu	37	15	99798554	99798554	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76377113	76377113	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62859212	62859212	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A3	374819	broad.mit.edu	37	17	62859212	62859212	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70611392	70611392	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70621302	70621302	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70611392	70611392	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137020	40137020	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137020	40137020	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC56	115399	broad.mit.edu	37	11	552165	552165	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70304076	70304076	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8D	55144	broad.mit.edu	37	1	90399760	90399760	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8D	55144	broad.mit.edu	37	1	90399760	90399760	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86041980	86041980	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745991	77745991	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745991	77745991	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRWD1	222229	broad.mit.edu	37	7	102106703	102106703	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSS	4047	broad.mit.edu	37	21	47636179	47636179	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74969481	74969481	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74969481	74969481	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L3	51747	broad.mit.edu	37	17	48817732	48817733	+	Intron	INS	-	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160741774	160741774	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160741774	160741774	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160784485	160784485	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160784485	160784485	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL6	57151	broad.mit.edu	37	17	34263771	34263771	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL6	57151	broad.mit.edu	37	17	34263771	34263771	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTR1	8216	broad.mit.edu	37	22	21349427	21349427	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254905	30254905	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254905	30254905	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969330	140969330	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140984396	140984396	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140985421	140985421	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140969330	140969330	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140984396	140984396	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140985421	140985421	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEF1	64110	broad.mit.edu	37	3	184429233	184429233	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEF1	64110	broad.mit.edu	37	3	184429233	184429233	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78130849	78130849	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78130849	78130849	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139996768	139996769	+	Intron	INS	-	AC	AC	rs67165319		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139997751	139997752	+	Intron	DEL	TT	-	-	rs72469431		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103553402	103553402	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103553402	103553402	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANSC1	54682	broad.mit.edu	37	12	12491436	12491436	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANSC1	54682	broad.mit.edu	37	12	12491436	12491436	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66729153	66729153	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66729153	66729153	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12044543	12044543	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12044543	12044543	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43364128	43364128	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K14	9020	broad.mit.edu	37	17	43364128	43364128	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48248367	48248367	+	Nonsense_Mutation	SNP	G	T	T	rs66911538		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48248367	48248367	+	Nonsense_Mutation	SNP	G	T	T	rs66911538		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44067349	44067349	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44067349	44067349	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164466875	164466875	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111394	165111394	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164466875	164466875	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165111394	165111394	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119727850	119727850	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119749443	119749443	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119727850	119727850	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119749443	119749443	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82034994	82034994	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAT1A	4143	broad.mit.edu	37	10	82034994	82034994	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498456	66498456	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498456	66498456	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138700009	138700010	+	Intron	INS	-	A	A	rs145233249		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127324962	127324962	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136626440	136626440	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136626440	136626440	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30680116	30680116	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30680116	30680116	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47913309	47913309	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151134112	151134112	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151134112	151134112	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED27	9442	broad.mit.edu	37	9	134814868	134814868	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED27	9442	broad.mit.edu	37	9	134814868	134814868	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED6	10001	broad.mit.edu	37	14	71067426	71067426	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126774191	126774191	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126776495	126776495	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126774191	126774191	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126776495	126776495	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47910765	47910765	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112778849	112778849	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112778849	112778849	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MESDC1	59274	broad.mit.edu	37	15	81295579	81295579	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP4	4239	broad.mit.edu	37	17	19288711	19288711	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP4	4239	broad.mit.edu	37	17	19288711	19288711	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119216679	119216679	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205538353	205538353	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD4	148808	broad.mit.edu	37	1	205538353	205538353	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135077583	135077583	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB2	142678	broad.mit.edu	37	1	1560315	1560315	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18463434	18463434	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18463434	18463434	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7612174	7612174	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR409	574413	broad.mit.edu	37	14	101531710	101531710	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR409	574413	broad.mit.edu	37	14	101531710	101531710	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517C	574492	broad.mit.edu	37	19	54242785	54242786	+	5'Flank	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR656	724026	broad.mit.edu	37	14	101533001	101533001	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR656	724026	broad.mit.edu	37	14	101533001	101533001	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49432243	49432243	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49432243	49432243	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20365601	20365601	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20365601	20365601	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLPH	79083	broad.mit.edu	37	2	238434453	238434453	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLPH	79083	broad.mit.edu	37	2	238434453	238434453	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAA	166785	broad.mit.edu	37	4	146576326	146576326	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAA	166785	broad.mit.edu	37	4	146576326	146576326	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89131199	89131199	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857151	90857151	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857151	90857151	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158811789	158811789	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100843433	100843433	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT3	346606	broad.mit.edu	37	7	100843433	100843433	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132693794	132693794	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132693794	132693794	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43817854	43817855	+	Intron	DNP	TG	AT	AT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPL	4352	broad.mit.edu	37	1	43817854	43817855	+	Intron	DNP	TG	AT	AT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL39	54148	broad.mit.edu	37	21	26969716	26969716	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL39	54148	broad.mit.edu	37	21	26969716	26969716	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60230080	60230080	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60230080	60230080	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60064675	60064675	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A4A	51338	broad.mit.edu	37	11	60064675	60064675	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17086806	17086807	+	Intron	DNP	GG	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17086806	17086807	+	Intron	DNP	GG	TT	TT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56670942	56670942	+	5'Flank	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTDH	92140	broad.mit.edu	37	8	98657189	98657189	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63569783	63569783	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63569783	63569783	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11180068	11180068	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR9	66036	broad.mit.edu	37	8	11180068	11180068	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237054771	237054771	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29881603	29881603	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29881603	29881603	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124646418	124646418	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124646418	124646418	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8962036	8962036	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009174	9009174	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009176	9009176	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9020128	9020128	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9047436	9047436	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9080347	9080347	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8962036	8962036	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009174	9009174	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009176	9009176	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9020128	9020128	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9047436	9047436	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675547	100675547	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100678561	100678561	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683947	100683947	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683947	100683947	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1103934	1103934	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3228247	3228247	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3235361	3235361	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3248432	3248432	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3228247	3228247	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3248432	3248432	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77739296	77739296	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEOV2	150678	broad.mit.edu	37	2	241070375	241070375	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81101340	81101340	+	5'Flank	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15829246	15829246	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15829246	15829246	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108218456	108218456	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10430422	10430422	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432233	10432233	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10430422	10430422	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10432233	10432233	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10356667	10356667	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10356667	10356667	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23862516	23862516	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23866764	23866764	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23867880	23867880	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23862516	23862516	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23866764	23866764	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23867880	23867880	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884105	23884105	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23886822	23886823	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884105	23884105	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23886822	23886823	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45299253	45299253	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL4	4635	broad.mit.edu	37	17	45299253	45299253	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16674171	16674171	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18054407	18054407	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO15A	51168	broad.mit.edu	37	17	18054407	18054407	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26163960	26163960	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26163960	26163960	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109844480	109844480	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171509600	171509600	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171509600	171509600	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47361913	47361913	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76623721	76623721	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76623721	76623721	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76909505	76909505	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76909505	76909505	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128331738	128331738	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOG	4656	broad.mit.edu	37	1	203053128	203053128	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24385442	24385442	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24385442	24385442	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1915753	1915753	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA11	84779	broad.mit.edu	37	4	80246771	80246771	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA11	84779	broad.mit.edu	37	4	80246771	80246771	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89880732	89880732	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89880732	89880732	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23370621	23370621	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPB	63908	broad.mit.edu	37	20	23370621	23370621	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78515588	78515588	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15470780	15470780	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15470780	15470780	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35756431	35756431	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35756431	35756431	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF6	653149	broad.mit.edu	37	1	108993148	108993148	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF6	653149	broad.mit.edu	37	1	108993148	108993148	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144618449	144618449	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168520	144168520	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144168526	144168526	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	112832189	112832189	+	5'UTR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113102898	113102898	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113102898	113102898	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22849675	22849675	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22849675	22849675	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158494630	158494630	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158494630	158494630	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46268485	46268485	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46268485	46268485	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00188	125144	broad.mit.edu	37	17	16342764	16342764	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00188	125144	broad.mit.edu	37	17	16342764	16342764	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG1	10397	broad.mit.edu	37	8	134292652	134292652	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149918784	149918784	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149918784	149918784	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119064823	119064823	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	119064823	119064823	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFV1	4723	broad.mit.edu	37	11	67379275	67379275	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152566225	152566225	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152566225	152566225	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20948973	20948973	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20948973	20948973	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148284	22148284	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22148284	22148284	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46133982	46133982	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46133982	46133982	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIL2	4796	broad.mit.edu	37	8	145657761	145657761	+	Silent	SNP	G	A	A	rs34599999	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236192920	236192920	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236192920	236192920	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173525608	173525608	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173525608	173525608	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3613223	3613223	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54304586	54304586	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54304586	54304586	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587961	247587961	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587961	247587961	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369712	56369712	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369712	56369712	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101089990	101089990	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101089990	101089990	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43666912	43666912	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50744734	50744734	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50745614	50745614	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50744734	50744734	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50745614	50745614	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155774756	155774756	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149356498	149356498	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149356498	149356498	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157183027	157183027	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107834586	107834586	+	Missense_Mutation	SNP	A	T	T	rs146218985	byFrequency	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107834586	107834586	+	Missense_Mutation	SNP	A	T	T	rs146218985	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50645575	50645575	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51149829	51149829	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	51149829	51149829	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN5P2	260294	broad.mit.edu	37	7	72436751	72436751	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88679406	88679406	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61386223	61386223	+	Missense_Mutation	SNP	G	T	T	rs148569146	byFrequency	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK2	81788	broad.mit.edu	37	1	205290708	205290708	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2289455	2289455	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT1	4521	broad.mit.edu	37	7	2289455	2289455	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135286354	135286354	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135286354	135286354	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153995618	153995618	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	153995618	153995618	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134051080	134051080	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXN	64359	broad.mit.edu	37	17	722618	722618	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113369716	113369716	+	Frame_Shift_Del	DEL	A	-	-	rs11352835		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509335	228509335	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228509335	228509335	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141303	28141303	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141303	28141303	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645208	167645208	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645208	167645208	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78369779	78369779	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78380866	78380866	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78369779	78369779	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78380866	78380866	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102359240	102359240	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML1	283298	broad.mit.edu	37	11	7531356	7531356	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47759675	47759675	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47759675	47759675	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735298	55735298	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735298	55735298	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900209	123900209	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900722	123900722	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900209	123900209	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G8	219869	broad.mit.edu	37	11	123900722	123900722	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123848164	123848164	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123848164	123848164	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332060	107332060	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C8	138802	broad.mit.edu	37	9	107332060	107332060	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13F1	138805	broad.mit.edu	37	9	107267441	107267441	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13F1	138805	broad.mit.edu	37	9	107267441	107267441	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835510	247835510	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835510	247835510	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678094	130678094	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678094	130678094	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248844970	248844970	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248844970	248844970	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248845065	248845065	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D4	8385	broad.mit.edu	37	17	2966144	2966145	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1D4	8385	broad.mit.edu	37	17	2966144	2966145	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2K2	26248	broad.mit.edu	37	9	114090287	114090287	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2K2	26248	broad.mit.edu	37	9	114090287	114090287	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138836	248138836	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138836	248138836	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112202	248112202	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112202	248112202	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248569195	248569195	+	5'Flank	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136164	55136164	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55136164	55136164	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55432926	55432926	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433526	55433526	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55432926	55432926	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433526	55433526	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123811224	123811224	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123811224	123811224	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483031	20483031	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K14	122740	broad.mit.edu	37	14	20483031	20483031	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5345155	5345155	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B2	79345	broad.mit.edu	37	11	5345155	5345155	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023930	6023930	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A4	120793	broad.mit.edu	37	11	6023930	6023930	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B12	390191	broad.mit.edu	37	11	58207543	58207543	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55607101	55607101	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55607101	55607101	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97851886	97851886	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97851886	97851886	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380871	56380871	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380871	56380871	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020456	56020456	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020456	56020456	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21108972	21108972	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21108972	21108972	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777159	123777159	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777159	123777159	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927268	55927268	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927268	55927268	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56511222	56511222	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G4	283189	broad.mit.edu	37	11	56511222	56511222	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77761566	77761566	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77761566	77761566	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101725027	101725027	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163378326	163378326	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163378326	163378326	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAG1	55824	broad.mit.edu	37	8	81905543	81905543	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAG1	55824	broad.mit.edu	37	8	81905543	81905543	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77051812	77051812	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77051812	77051812	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28866674	28866674	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28866674	28866674	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX3	116337	broad.mit.edu	37	11	124489566	124489566	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PANX3	116337	broad.mit.edu	37	11	124489566	124489566	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176679324	176679324	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176738883	176738883	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176679324	176679324	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176738883	176738883	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118969862	118969862	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118982315	118982315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118969862	118969862	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118982315	118982315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51592698	51592698	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51592698	51592698	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161969831	161969831	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161969831	161969831	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150840994	150840994	+	Missense_Mutation	SNP	G	T	T	rs147522572	byFrequency	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150840994	150840994	+	Missense_Mutation	SNP	G	T	T	rs147522572	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125617385	125617385	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125617385	125617385	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102509514	102509514	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102509514	102509514	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223158469	223158469	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223158469	223158469	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47360037	47360037	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47360037	47360037	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134076220	134076220	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134076220	134076220	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91131866	91131866	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873373	91873373	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91131866	91131866	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873373	91873373	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5441303	5441303	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5441303	5441303	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5449876	5449876	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99658492	99658492	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141234086	141234086	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61987564	61987564	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61987564	61987564	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31144040	31144040	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	31144040	31144040	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537567	140537567	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB17	54661	broad.mit.edu	37	5	140537567	140537567	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82581394	82581394	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82581394	82581394	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142537297	142537297	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142537297	142537297	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78804692	78804692	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72289564	72289564	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72291898	72291898	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72289564	72289564	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72291898	72291898	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704818	20704818	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20801732	20801733	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20704818	20704818	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20801732	20801733	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66827248	66827248	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4B	5142	broad.mit.edu	37	1	66827248	66827248	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410409	20410409	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410409	20410409	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57333219	57333219	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57333219	57333219	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239164502	239164502	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239165693	239165693	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239164502	239164502	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER2	8864	broad.mit.edu	37	2	239165693	239165693	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48573120	48573120	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB4	5210	broad.mit.edu	37	3	48573120	48573120	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97797421	97797421	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97892084	97892084	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97797421	97797421	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97892084	97892084	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153283302	153283302	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153283302	153283302	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGS	94005	broad.mit.edu	37	17	26881657	26881657	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGU	128869	broad.mit.edu	37	20	33225840	33225840	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGU	128869	broad.mit.edu	37	20	33225840	33225840	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18499667	18499667	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18499667	18499667	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106513259	106513259	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106513259	106513259	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46521524	46521524	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46521524	46521524	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130425910	130425910	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130425910	130425910	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3644326	3644326	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25145401	25145401	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25145401	25145401	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94349640	94349640	+	Intron	DEL	T	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381607	68381607	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PJA1	64219	broad.mit.edu	37	X	68381607	68381607	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47869180	47869180	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47869180	47869180	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81167390	81167390	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81167390	81167390	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L2	27039	broad.mit.edu	37	5	137235237	137235237	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L2	27039	broad.mit.edu	37	5	137235237	137235237	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN2	5586	broad.mit.edu	37	1	89289990	89289990	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN2	5586	broad.mit.edu	37	1	89289990	89289990	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125301253	125301253	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125301253	125301253	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201263013	201263013	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20305148	20305148	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2A	5320	broad.mit.edu	37	1	20305148	20305148	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807978	59807978	+	Missense_Mutation	SNP	G	T	T	rs79964989	byFrequency;by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59807978	59807978	+	Missense_Mutation	SNP	G	T	T	rs79964989	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9457444	9457444	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9457444	9457444	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39801184	39801184	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39801184	39801184	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD2	257068	broad.mit.edu	37	3	111432892	111432892	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD2	257068	broad.mit.edu	37	3	111432892	111432892	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105398569	105398569	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204237428	204237428	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131948894	131948894	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131953181	131953181	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43980795	43980795	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43980795	43980795	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43531202	43531202	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHM1	9842	broad.mit.edu	37	17	43531202	43531202	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131864655	131864655	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192299	132192299	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131864655	131864655	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132192299	132192299	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48447094	48447094	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48447094	48447094	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50714404	50714404	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMEPA1	56937	broad.mit.edu	37	20	56227123	56227123	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMP2	5375	broad.mit.edu	37	8	82355610	82355610	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMP2	5375	broad.mit.edu	37	8	82355610	82355610	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7607846	7607846	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133245353	133245353	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133245353	133245353	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLM	27434	broad.mit.edu	37	7	44119289	44119289	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121215823	121215823	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121215823	121215823	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113304689	113304689	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113304689	113304689	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79784770	79784770	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79784770	79784770	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104085	53104085	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104085	53104085	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542565	14542565	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542565	14542565	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147561705	147561705	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147561705	147561705	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39125441	39125441	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39125441	39125441	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23803479	23803479	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76809248	76809248	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76809248	76809248	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81676789	81676789	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81676789	81676789	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203024729	203024729	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203024729	203024729	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4934426	4934426	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1CA	5499	broad.mit.edu	37	11	67168577	67168577	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54974309	54974309	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182827132	182827132	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182852498	182852498	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182852500	182852500	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182827132	182827132	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182852498	182852498	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182852500	182852500	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPRC1	23082	broad.mit.edu	37	10	103900991	103900991	+	Missense_Mutation	SNP	T	C	C	rs143292683	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32122510	32122510	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47087824	47087824	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47087824	47087824	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC2	54896	broad.mit.edu	37	1	19644421	19644421	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQLC2	54896	broad.mit.edu	37	1	19644421	19644421	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF10	343071	broad.mit.edu	37	1	12954377	12954377	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF4	400735	broad.mit.edu	37	1	12939546	12939546	+	Missense_Mutation	SNP	C	A	A	rs76416839		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70980360	70980360	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981552	70981552	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981552	70981552	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23521360	23521360	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47364417	47364417	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47364417	47364417	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84651021	84651021	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48712011	48712011	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48712011	48712011	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82090665	82090665	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82090798	82090798	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82090798	82090798	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5294629	5294629	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5294629	5294629	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16008396	16008396	+	Intron	SNP	C	A	A	rs77182932	byFrequency;by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16008396	16008396	+	Intron	SNP	C	A	A	rs77182932	byFrequency;by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57252182	57252182	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57252182	57252182	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421781	43421781	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421781	43421781	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43448774	43448774	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43261693	43261693	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43261693	43261693	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076322	87076322	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87076322	87076322	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD11	5717	broad.mit.edu	37	17	30800864	30800864	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD11	5717	broad.mit.edu	37	17	30800864	30800864	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSME4	23198	broad.mit.edu	37	2	54161615	54161615	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTPIP2	9050	broad.mit.edu	37	18	43571960	43571960	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSTPIP2	9050	broad.mit.edu	37	18	43571960	43571960	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS2	81490	broad.mit.edu	37	11	479296	479296	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71331318	71331318	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71331318	71331318	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	78958693	78958693	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125140305	125140305	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125140305	125140305	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2	5747	broad.mit.edu	37	8	141712917	141712917	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87701591	87701591	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87701591	87701591	+	Silent	SNP	T	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN5	84867	broad.mit.edu	37	11	18754000	18754000	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	2945550	2945550	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	2945550	2945550	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70951642	70951642	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721475	198721475	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721475	198721475	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8451872	8451872	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748031	8748031	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748125	8748125	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8451872	8451872	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748031	8748031	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748125	8748125	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157413593	157413594	+	Intron	DEL	AC	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157691111	157691111	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15677652	15677652	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71094883	71094883	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71094883	71094883	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29642689	29642690	+	Intron	DEL	GT	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652315	121652315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121652315	121652315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9302192	9302192	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9302192	9302192	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPRT	23475	broad.mit.edu	37	16	29708207	29708207	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42966067	42966067	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42966086	42966086	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42966067	42966067	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IL1	5866	broad.mit.edu	37	11	61674205	61674205	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP2	79874	broad.mit.edu	37	16	28916237	28916237	+	3'UTR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP2	79874	broad.mit.edu	37	16	28916237	28916237	+	3'UTR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17699755	17699755	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17699755	17699755	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95412526	95412526	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95412526	95412526	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1AP1	55974	broad.mit.edu	37	1	155203434	155203434	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74441943	74441943	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74441943	74441943	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47032551	47032551	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47032551	47032551	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6157491	6157491	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6157491	6157491	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM45	129831	broad.mit.edu	37	2	178977516	178977516	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM45	129831	broad.mit.edu	37	2	178977516	178977516	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49076887	49076887	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49076887	49076887	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDX	5962	broad.mit.edu	37	11	110108581	110108581	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36112503	36112503	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36112503	36112503	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349036	79349036	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79350265	79350265	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349036	79349036	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79350265	79350265	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103136908	103136908	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103275876	103275876	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103393679	103393679	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103136908	103136908	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103275876	103275876	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103393679	103393679	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM1	28954	broad.mit.edu	37	20	30060819	30060819	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM1	28954	broad.mit.edu	37	20	30060819	30060819	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REN	5972	broad.mit.edu	37	1	204128529	204128529	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39314400	39314400	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39314400	39314400	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL4	266747	broad.mit.edu	37	22	24040541	24040541	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL4	266747	broad.mit.edu	37	22	24040541	24040541	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD1	400966	broad.mit.edu	37	2	87157744	87157744	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD1	400966	broad.mit.edu	37	2	87157744	87157744	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116303913	116303913	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163042540	163042540	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163042540	163042540	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74475750	74475750	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOA	387	broad.mit.edu	37	3	49397507	49397507	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40705942	40705942	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLF	6018	broad.mit.edu	37	1	40705942	40705942	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44030162	44030162	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF167	26001	broad.mit.edu	37	17	4845847	4845847	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF167	26001	broad.mit.edu	37	17	4845847	4845847	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF26	79102	broad.mit.edu	37	11	119207086	119207086	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF26	79102	broad.mit.edu	37	11	119207086	119207086	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24617145	24617145	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24617145	24617145	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF32	140545	broad.mit.edu	37	7	156469174	156469174	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30780747	30780747	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF40	9810	broad.mit.edu	37	16	30780747	30780747	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124754957	124754957	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124754957	124754957	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18622649	18622649	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18622649	18622649	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38146132	38146132	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL41	6171	broad.mit.edu	37	12	56510626	56510626	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL41	6171	broad.mit.edu	37	12	56510626	56510626	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS10	6204	broad.mit.edu	37	6	34393059	34393059	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26885235	26885235	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA1	6195	broad.mit.edu	37	1	26885235	26885235	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166864430	166864430	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP58	388524	broad.mit.edu	37	19	23973458	23973458	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRBP1	6238	broad.mit.edu	37	20	17595602	17595602	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108995490	108995490	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108995490	108995490	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO4	343637	broad.mit.edu	37	20	948097	948097	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP2	344892	broad.mit.edu	37	3	187416442	187416442	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP2	344892	broad.mit.edu	37	3	187416442	187416442	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY3	22902	broad.mit.edu	37	4	71629436	71629436	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY3	22902	broad.mit.edu	37	4	71629436	71629436	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC3A	10900	broad.mit.edu	37	17	42394865	42394865	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC3A	10900	broad.mit.edu	37	17	42394865	42394865	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93004039	93004039	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93074682	93074683	+	Intron	DNP	CG	AA	AA	rs139958778	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93004039	93004039	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93074682	93074683	+	Intron	DNP	CG	AA	AA	rs139958778	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36259467	36259467	+	5'UTR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32340072	32340072	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976573	38976573	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39027322	39027322	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976573	38976573	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659695	237659695	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237713847	237713847	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237659695	237659695	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237713847	237713847	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237817571	237817571	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237951302	237951302	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33872331	33872331	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33872331	33872331	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101704717	101704717	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101704717	101704717	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992517	134992517	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992517	134992517	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173730	51173730	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173730	51173730	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50407691	50407691	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50407691	50407691	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128707376	128707376	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128707376	128707376	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200298195	200298195	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200298195	200298195	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50900219	50900219	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50900219	50900219	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127734179	127734179	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAI	286205	broad.mit.edu	37	9	127734179	127734179	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25669751	25669751	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25691247	25691247	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25669751	25669751	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25691247	25691247	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166198918	166198918	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166198918	166198918	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62019252	62019252	+	Missense_Mutation	SNP	C	T	T	rs150423825	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62025514	62025514	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62019252	62019252	+	Missense_Mutation	SNP	C	T	T	rs150423825	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167327216	167327216	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167327216	167327216	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50140755	50140755	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50140755	50140755	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50192497	50192497	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243652563	243652563	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR42E1	93517	broad.mit.edu	37	16	82033148	82033148	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR42E1	93517	broad.mit.edu	37	16	82033148	82033148	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39556195	39556195	+	Silent	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39556195	39556195	+	Silent	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13912364	13912364	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13912364	13912364	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169566297	169566297	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169566297	169566297	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84658677	84658677	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84658677	84658677	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9063152	9063152	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9063152	9063152	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122631817	122631817	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122631817	122631817	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48057248	48057248	+	Missense_Mutation	SNP	T	G	G	rs147987261		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48057248	48057248	+	Missense_Mutation	SNP	T	G	G	rs147987261		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPN1	57190	broad.mit.edu	37	1	26135659	26135659	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPN1	57190	broad.mit.edu	37	1	26135659	26135659	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA13	388007	broad.mit.edu	37	14	95108302	95108303	+	Intron	DNP	AG	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA13	388007	broad.mit.edu	37	14	95108302	95108303	+	Intron	DNP	AG	TT	TT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030031	95030031	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030031	95030031	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61570386	61570386	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61570386	61570386	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135145179	135145180	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135206746	135206746	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135206746	135206746	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26688319	26688319	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26702124	26702124	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26688319	26688319	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26702124	26702124	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198265001	198265001	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198265001	198265001	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7285494	7285494	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7285494	7285494	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1719992	1719992	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46338938	46338938	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156184831	156184831	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14181532	14181532	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	14181532	14181532	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67101547	67101547	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67108500	67108500	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67101547	67101547	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67108500	67108500	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK2	10110	broad.mit.edu	37	20	42199282	42199282	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK2	10110	broad.mit.edu	37	20	42199282	42199282	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B2	10603	broad.mit.edu	37	7	101944560	101944560	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156784833	156784833	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156784833	156784833	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3C	10044	broad.mit.edu	37	9	130509325	130509325	+	Intron	SNP	G	A	A	rs144177398	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM2	6493	broad.mit.edu	37	21	38092061	38092061	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38633874	38633874	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A6	345274	broad.mit.edu	37	4	87752868	87752868	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56901119	56901119	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56906417	56906417	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56901119	56901119	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56906417	56906417	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122809425	122809425	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122809425	122809425	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A5	284111	broad.mit.edu	37	17	6604533	6604533	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A1	6566	broad.mit.edu	37	1	113456702	113456702	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A1	6566	broad.mit.edu	37	1	113456702	113456702	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A7	9194	broad.mit.edu	37	12	60098636	60098636	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A7	9194	broad.mit.edu	37	12	60098636	60098636	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36686351	36686351	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36686351	36686351	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110757068	110757068	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110757068	110757068	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62951043	62951043	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62951043	62951043	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A3	6581	broad.mit.edu	37	6	160828311	160828311	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A3	6581	broad.mit.edu	37	6	160828311	160828311	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62751943	62751943	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62751943	62751943	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43269342	43269342	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A7	10864	broad.mit.edu	37	6	43269342	43269342	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62767039	62767039	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62767039	62767039	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19698032	19698032	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19698032	19698032	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95818951	95818951	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A13	10165	broad.mit.edu	37	7	95818951	95818951	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A34	284723	broad.mit.edu	37	1	16064785	16064785	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128324424	128324424	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128324424	128324424	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8075422	8075422	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8075422	8075422	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9097503	9097503	+	3'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A5	6518	broad.mit.edu	37	1	9118380	9118380	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	10027563	10027563	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	10027563	10027563	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118174010	118174010	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118174010	118174010	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35E4	339665	broad.mit.edu	37	22	31033208	31033208	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118596610	118596610	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118596610	118596610	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18276308	18276308	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18276308	18276308	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33706321	33706321	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33706321	33706321	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57182358	57182359	+	Intron	INS	-	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57182358	57182359	+	Intron	INS	-	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75672394	75672394	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75707528	75707528	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75707607	75707607	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76107211	76107211	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75672394	75672394	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75707607	75707607	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76107211	76107211	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19445753	19445753	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19445753	19445753	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162661084	162661084	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162661084	162661084	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51879644	51879644	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51879644	51879644	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26700315	26700315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26700315	26700315	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110741195	110741195	+	3'UTR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A18	348932	broad.mit.edu	37	5	1235534	1235534	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A1	6529	broad.mit.edu	37	3	11061859	11061859	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A1	6529	broad.mit.edu	37	3	11061859	11061859	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55729051	55729051	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55729051	55729051	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A3	6531	broad.mit.edu	37	5	1422011	1422011	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70515594	70515594	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70515594	70515594	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111870801	111870801	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111870801	111870801	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48504417	48504417	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48504417	48504417	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143236652	143236652	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143236652	143236652	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143346104	143346104	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143346441	143346441	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21454051	21454051	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21454051	21454051	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21355423	21355423	+	Splice_Site	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21355423	21355423	+	Splice_Site	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21196581	21196581	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21196581	21196581	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74904152	74904152	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74904152	74904152	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN13	146857	broad.mit.edu	37	17	33768287	33768287	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN13	146857	broad.mit.edu	37	17	33768287	33768287	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168096927	168096927	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168096927	168096927	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329238	88329238	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329238	88329238	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56559121	56559121	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18897028	18897028	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18907284	18907284	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18897028	18897028	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18907284	18907284	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70497061	70497061	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC1	64093	broad.mit.edu	37	14	70497061	70497061	+	3'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130913493	130913493	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84375098	84375098	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84375098	84375098	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-I	100170222	broad.mit.edu	37	3	190594241	190594241	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAR-I	100170222	broad.mit.edu	37	3	190594241	190594241	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130784044	130784044	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12371771	12371771	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12371771	12371771	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH1	402381	broad.mit.edu	37	9	138586907	138586907	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108337332	108337332	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108337332	108337332	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106960961	106960961	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106960961	106960961	+	Silent	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231326265	231326265	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231326265	231326265	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101253240	101253240	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101253240	101253240	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34207415	34207415	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596702	142596702	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596702	142596702	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217955584	217955584	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217955584	217955584	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938449	52938449	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938449	52938449	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44337843	44337843	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATS1	221409	broad.mit.edu	37	6	44337843	44337843	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228886442	228886442	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228886442	228886442	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158582418	158582418	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158583631	158583631	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158587491	158587491	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158604244	158604244	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158610002	158610002	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612178	158612178	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644393	158644393	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158655228	158655228	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158583631	158583631	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158587491	158587491	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158604244	158604244	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612178	158612178	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644393	158644393	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54848483	54848483	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54848483	54848483	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65218910	65218910	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65249327	65249327	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65253520	65253520	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65249327	65249327	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTB	6710	broad.mit.edu	37	14	65253520	65253520	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142747463	142747463	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142747463	142747463	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP2	23635	broad.mit.edu	37	5	80785160	80785161	+	Intron	INS	-	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54707993	54707993	+	Intron	SNP	T	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149486458	149486458	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSU72	29101	broad.mit.edu	37	1	1500240	1500240	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSU72	29101	broad.mit.edu	37	1	1500240	1500240	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX1	6756	broad.mit.edu	37	X	48117035	48117035	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL6	10402	broad.mit.edu	37	3	98503797	98503797	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL6	10402	broad.mit.edu	37	3	98503797	98503797	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76775597	76775597	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22486883	22486883	+	Intron	SNP	C	A	A	rs113220991	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22486883	22486883	+	Intron	SNP	C	A	A	rs113220991	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99796385	99796385	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99796385	99796385	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56748662	56748662	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56748662	56748662	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC1	6781	broad.mit.edu	37	8	23709581	23709581	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32C	282974	broad.mit.edu	37	10	134040330	134040330	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32C	282974	broad.mit.edu	37	10	134040330	134040330	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43624015	43624015	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125482978	125482978	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STT3A	3703	broad.mit.edu	37	11	125482978	125482978	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120977787	120977787	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120977787	120977787	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46313275	46313275	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46313275	46313275	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT4A1	25830	broad.mit.edu	37	22	44235793	44235793	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31587961	31587961	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31587961	31587961	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT7L	9913	broad.mit.edu	37	2	27884203	27884203	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT7L	9913	broad.mit.edu	37	2	27884203	27884203	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113166889	113166889	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113221313	113221313	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113166889	113166889	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113221313	113221313	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29819728	29819728	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYBU	55638	broad.mit.edu	37	8	110591950	110591951	+	Intron	INS	-	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58475035	58475035	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58475035	58475035	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152716829	152716829	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152716829	152716829	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64483301	64483301	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64483301	64483301	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66812117	66812117	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT12	91683	broad.mit.edu	37	11	66812117	66812117	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111730735	111730735	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGLN3	29114	broad.mit.edu	37	3	111730735	111730735	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162091767	162091767	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162091767	162091767	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38305252	38305252	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38305252	38305252	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141256	143141256	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141256	143141256	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71604708	71604708	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71604708	71604708	+	Silent	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47188274	47188274	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100002603	100002603	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100002603	100002603	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17208408	17208408	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17208408	17208408	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3C	162699	broad.mit.edu	37	18	44555227	44555227	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3C	162699	broad.mit.edu	37	18	44555227	44555227	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53018255	53018255	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53018255	53018255	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF4	6925	broad.mit.edu	37	18	53303413	53303413	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTE1	202500	broad.mit.edu	37	6	44254167	44254167	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTE1	202500	broad.mit.edu	37	6	44254167	44254167	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67243129	67243129	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67243129	67243129	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104441930	104441930	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104441930	104441930	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65175441	65175441	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120976489	120976489	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120976489	120976489	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT5	146279	broad.mit.edu	37	16	10729817	10729817	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT5	146279	broad.mit.edu	37	16	10729817	10729817	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104465059	104465059	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104465059	104465059	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX261	113419	broad.mit.edu	37	2	71220968	71220968	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62230430	62230430	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX2	55852	broad.mit.edu	37	17	62230430	62230430	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50697068	50697068	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50697068	50697068	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141762548	141762548	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141762548	141762548	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93516787	93516787	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93519434	93519434	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93519434	93519434	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPT	29844	broad.mit.edu	37	19	54618759	54618759	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR1	7046	broad.mit.edu	37	9	101904899	101904899	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR1	7046	broad.mit.edu	37	9	101904899	101904899	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM4	7047	broad.mit.edu	37	3	44934883	44934883	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43559173	43559173	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648571	169648571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648571	169648571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122755273	122755273	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122755273	122755273	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1P1	374500	broad.mit.edu	37	13	52853940	52853940	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11418944	11418944	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11630033	11630033	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11418944	11418944	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11630033	11630033	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32525054	32525054	+	Missense_Mutation	SNP	G	A	A	rs148623159		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32525054	32525054	+	Missense_Mutation	SNP	G	A	A	rs148623159		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43779579	43779579	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43779579	43779579	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD2	166815	broad.mit.edu	37	4	90034726	90034726	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD2	166815	broad.mit.edu	37	4	90034726	90034726	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153692094	153692094	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153692094	153692094	+	Silent	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54214562	54214562	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54214562	54214562	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166910470	166910470	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166935713	166935713	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	166935713	166935713	+	Splice_Site	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63088515	63088515	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN2	83660	broad.mit.edu	37	15	63088515	63088515	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF18	116441	broad.mit.edu	37	3	149051183	149051183	+	5'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF18	116441	broad.mit.edu	37	3	149051183	149051183	+	5'UTR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF1	10548	broad.mit.edu	37	14	24662175	24662175	+	Missense_Mutation	SNP	G	A	A	rs150301168	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75387409	75387409	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75387409	75387409	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED3	23423	broad.mit.edu	37	15	79614583	79614583	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED3	23423	broad.mit.edu	37	15	79614583	79614583	+	3'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129563130	129563130	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694237	129694237	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129563130	129563130	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129694237	129694237	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32955916	32955916	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32962070	32962070	+	Silent	SNP	G	T	T	rs146893987	byFrequency	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32962070	32962070	+	Silent	SNP	G	T	T	rs146893987	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48845927	48845927	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48845927	48845927	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42824406	42824406	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42824406	42824406	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36230498	36230498	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36230498	36230498	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150C	441027	broad.mit.edu	37	4	83417293	83417293	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM150C	441027	broad.mit.edu	37	4	83417293	83417293	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15430314	15430314	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15601532	15601532	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15430314	15430314	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15601532	15601532	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63189053	63189053	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74327059	74327059	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74327059	74327059	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38B	55151	broad.mit.edu	37	9	108510256	108510256	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM68	137695	broad.mit.edu	37	8	56669049	56669049	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM68	137695	broad.mit.edu	37	8	56669049	56669049	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM90A	646658	broad.mit.edu	37	14	74876522	74876522	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69100244	69100244	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69100244	69100244	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68725197	68725197	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68725197	68725197	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68725499	68725499	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS5	80975	broad.mit.edu	37	11	113566249	113566249	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS5	80975	broad.mit.edu	37	11	113566249	113566249	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117797466	117797466	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117797466	117797466	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12186307	12186307	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12186307	12186307	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74902192	74902192	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74902192	74902192	+	Silent	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128645359	128645359	+	Intron	DEL	T	-	-	rs142831893		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24817548	24817548	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24817548	24817548	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47479071	47479071	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47479071	47479071	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42635213	42635213	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42635213	42635213	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577594	7577595	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577594	7577595	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72366519	72366519	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72366519	72366519	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144320478	144320478	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144320478	144320478	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP1	1200	broad.mit.edu	37	11	6639071	6639071	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188925302	188925302	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPRG1	285386	broad.mit.edu	37	3	188925302	188925302	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186306081	186306081	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186306081	186306081	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSD1	23430	broad.mit.edu	37	16	1306416	1306416	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20137797	20137797	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20137797	20137797	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRADD	8717	broad.mit.edu	37	16	67190465	67190465	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRADD	8717	broad.mit.edu	37	16	67190465	67190465	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF1	7185	broad.mit.edu	37	9	123688196	123688196	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42166916	42166916	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK1	22906	broad.mit.edu	37	3	42166916	42166916	+	Silent	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119996441	119996441	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119996441	119996441	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038008	55038008	+	3'UTR	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038008	55038008	+	3'UTR	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89537130	89537131	+	Intron	DNP	GG	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028078	248028078	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248031025	248031025	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248031402	248031402	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248028078	248028078	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM74	378108	broad.mit.edu	37	7	75028155	75028155	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM74	378108	broad.mit.edu	37	7	75028155	75028155	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189013213	189013214	+	Intron	DNP	GG	CT	CT	rs150566098	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189020209	189020209	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189020209	189020209	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54955191	54955191	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54955191	54955191	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72968044	72968044	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72968044	72968044	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38237446	38237446	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73253977	73253977	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77378052	77378052	+	Splice_Site	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77423091	77423091	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77378052	77378052	+	Splice_Site	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77423091	77423091	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234847526	234847526	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110232179	110232179	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV4	59341	broad.mit.edu	37	12	110232179	110232179	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY1	7258	broad.mit.edu	37	Y	9306516	9306516	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY1	7258	broad.mit.edu	37	Y	9306516	9306516	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3428348	3428348	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3428348	3428348	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43411214	43411214	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43411214	43411214	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33042738	33042738	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219614940	219614941	+	Intron	DNP	GG	AT	AT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219614940	219614941	+	Intron	DNP	GG	AT	AT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179427841	179427841	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179433781	179433781	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179452755	179452755	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179565924	179565924	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179567349	179567349	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593548	179593548	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179602664	179602664	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179669445	179669445	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179427841	179427841	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179433781	179433781	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179452755	179452755	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179565924	179565924	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179567349	179567349	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593548	179593548	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179602664	179602664	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179669445	179669445	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19747921	19747921	+	3'UTR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB6	84617	broad.mit.edu	37	18	12325202	12325202	+	Silent	SNP	G	C	C	rs148645230	byFrequency	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB6	84617	broad.mit.edu	37	18	12325202	12325202	+	Silent	SNP	G	C	C	rs148645230	byFrequency	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139583834	139583834	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139583834	139583834	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41856233	41856233	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166577955	166577955	+	Intron	SNP	C	A	A	rs141621646	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166577955	166577955	+	Intron	SNP	C	A	A	rs141621646	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346378	70346378	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346378	70346378	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36048935	36048935	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A2	167127	broad.mit.edu	37	5	36048935	36048935	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT8	7368	broad.mit.edu	37	4	115586823	115586823	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT8	7368	broad.mit.edu	37	4	115586823	115586823	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHMK1	127933	broad.mit.edu	37	1	162469656	162469656	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35381261	35381261	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35381261	35381261	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54586108	54586108	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54586108	54586108	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991222	158991222	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991222	158991222	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43918478	43918478	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URGCP	55665	broad.mit.edu	37	7	43918478	43918478	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126224636	126224636	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126224636	126224636	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216419857	216419857	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216257909	216257909	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216419857	216419857	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76714849	76714849	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76714849	76714849	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76815804	76815804	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76815804	76815804	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50759274	50759274	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50759274	50759274	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144854358	144854358	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145051673	145051673	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144854358	144854358	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145051673	145051673	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131541	131541	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2140535	2140535	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36813131	36813131	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627570	37627570	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383628	42383637	+	IGR	DEL	GAATGGAATC	-	-	rs67647124		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42600089	42600091	+	IGR	DEL	TCG	-	-	rs76005385		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52439056	52439056	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65662415	65662415	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	66929578	66929578	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8556531	8556531	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122484576	122484576	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007418	49007418	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49088820	49088820	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120585	49120585	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49437093	49437093	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51458627	51458627	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459288	51459288	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483559	51483559	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55069926	55069926	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156053	55156053	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156338	55156338	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234377	55234377	+	IGR	SNP	C	A	A	rs143235960	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259486	55259486	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55322940	55322940	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280494	56280494	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58111864	58111864	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58660294	58660294	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59283399	59283399	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	67558661	67558661	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90849580	90849580	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119145960	119145960	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965048	43965048	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19747111	19747111	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44544837	44544837	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65885003	65885003	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68476432	68476432	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83397467	83397467	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101393882	101393882	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114400	19114400	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137681	20137681	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59648497	59648497	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	70712409	70712410	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71797056	71797056	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95267407	95267407	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30298534	30298534	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34781585	34781585	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026683	18026683	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026761	18026761	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32618881	32618881	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823628	32823628	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33006951	33006951	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380251	33380251	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34325033	34325033	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34329395	34329395	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34339256	34339256	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34569647	34569647	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34724337	34724337	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727365	34727365	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46394988	46394990	+	IGR	DEL	ATG	-	-	rs144015128		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46417207	46417216	+	IGR	DEL	TTCGAATGGA	-	-	rs60768439		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48531704	48531704	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	8449397	8449397	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	17146317	17146317	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21518881	21518881	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26075161	26075161	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34292334	34292334	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44344989	44344989	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60214522	60214522	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60361771	60361771	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76533605	76533605	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29656247	29656247	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57597553	57597553	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57677909	57677909	+	IGR	SNP	G	T	T	rs112739440		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58331501	58331501	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65498667	65498667	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23185710	23185710	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23674999	23674999	+	IGR	SNP	C	T	T	rs73555022	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53020330	53020330	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7056583	7056583	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	100163936	100163936	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111391081	111391081	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117283752	117283752	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146527186	146527186	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146592588	146592588	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149050244	149050244	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101274	149101274	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262620	149262620	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166717886	166717886	+	IGR	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115376	191115376	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194159158	194159158	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196826990	196826990	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238654860	238654860	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400534	247400534	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248286230	248286230	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248486897	248486897	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066062	249066062	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80916906	80916906	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80961871	80961871	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873166	29873166	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873784	29873784	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5273337	5273337	+	IGR	SNP	G	T	T	rs112066381	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14898535	14898535	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23526454	23526454	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16348140	16348140	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349473	16349473	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389524	16389524	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17340583	17340583	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	18851138	18851138	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34987081	34987081	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103027909	103027909	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127315360	127315360	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349702	132349702	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067191	158067191	+	IGR	SNP	G	A	A	rs112631908		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17527087	17527087	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176190299	176190299	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994568	194994568	+	IGR	SNP	C	A	A	rs10182060	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210046952	210046952	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	228513248	228513248	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41383890	41383890	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43024348	43024349	+	IGR	DNP	AT	TA	TA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423875	81423875	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91766603	91766603	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91884504	91884504	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91888414	91888414	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91940691	91940691	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944167	91944167	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704523	148704523	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179367317	179367317	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	42734101	42734101	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88366851	88366851	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97783393	97783394	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112998792	112998792	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139402887	139402887	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165578169	165578170	+	IGR	DNP	TG	AT	AT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179208281	179208281	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19815782	19815782	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43390307	43390307	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355212	63355212	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70257082	70257082	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9431265	9431265	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97824017	97824017	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107911796	107911796	+	IGR	SNP	C	A	A	rs111539607	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110285128	110285128	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126847684	126847684	+	IGR	SNP	G	T	T	rs139041558	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161178435	161178435	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165809294	165809294	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170772322	170772322	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	177398373	177398396	+	IGR	DEL	AGGACGAAGAGCTGGAGAGCGCCA	-	-	rs145131557		TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305348	20305348	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23689087	23689087	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24787034	24787034	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24787134	24787134	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32888176	32888176	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37085880	37085880	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28503388	28503388	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926582	39926582	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49219225	49219225	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63937713	63937713	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7010463	7010463	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72294617	72294617	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7517226	7517226	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80776832	80776832	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92525729	92525729	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93802032	93802032	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281527	145281527	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886258	48886258	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930949	53930949	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55001436	55001436	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55832680	55832680	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56664991	56664991	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56873575	56873575	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217886	57217887	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57360856	57360856	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910261	62910261	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62970022	62970022	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63229806	63229806	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63392098	63392098	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63392205	63392205	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63454307	63454307	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894872	63894872	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88078213	88078213	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134420966	134420966	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143049456	143049456	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143049746	143049746	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70856828	70856828	+	IGR	SNP	G	A	A	rs148867161	by1000genomes	TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922179	92922179	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29825847	29825847	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689485	30689485	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44154031	44154031	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65617505	65617505	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673204	84673204	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674529	84674529	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92979263	92979263	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863527	110863527	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864257	110864257	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115238530	115238530	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122648355	122648355	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461236	124461236	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134744621	134744621	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134775131	134775131	+	IGR	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14262760	14262760	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712049	144712049	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701897	145701897	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179947	26179947	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35077784	35077784	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36229372	36229372	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63653620	63653620	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64772232	64772232	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65276091	65276091	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	70182838	70182838	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579506	78579506	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828463	79828463	+	IGR	DEL	C	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368183	89368183	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10011364	10011364	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13462776	13462776	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23556968	23556968	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23655615	23655615	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28661833	28661833	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	8904586	8904587	+	IGR	DNP	GG	AT	AT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131541	131541	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2140535	2140535	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36813131	36813131	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627570	37627570	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38598933	38598933	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52418718	52418718	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57427137	57427137	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65662415	65662415	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	66929578	66929578	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8556531	8556531	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122484576	122484576	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124247416	124247416	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007418	49007418	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120585	49120585	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49437093	49437093	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51393836	51393836	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51458627	51458627	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459288	51459288	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483559	51483559	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55069926	55069926	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086185	55086185	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086714	55086714	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156053	55156053	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55156338	55156338	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55212675	55212675	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234377	55234377	+	IGR	SNP	C	A	A	rs143235960	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259486	55259486	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55322940	55322940	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280494	56280494	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58111864	58111864	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58660294	58660294	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	62783567	62783567	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90849580	90849580	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92785868	92785868	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43965048	43965048	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	69512690	69512690	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111968594	111968594	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	113931086	113931086	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19747111	19747111	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	29172934	29172934	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44544837	44544837	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65885003	65885003	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841697	67841697	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68476432	68476432	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	81847395	81847395	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83397467	83397467	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101602673	101602673	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114400	19114400	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19476011	19476011	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20098110	20098110	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137681	20137681	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59648497	59648497	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	70712409	70712410	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71797056	71797056	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95267407	95267407	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009065	21009065	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30298534	30298534	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31108663	31108663	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34781585	34781585	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	69042212	69042212	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026683	18026683	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	18026761	18026761	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32823628	32823628	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34329395	34329395	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34339256	34339256	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34480595	34480595	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34569647	34569647	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34723638	34723638	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34724337	34724337	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727365	34727365	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34877122	34877122	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34878589	34878589	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48531704	48531704	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60689886	60689886	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60689889	60689889	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65657051	65657051	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	10763931	10763932	+	IGR	DNP	GG	TT	TT	rs139240852	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21518881	21518881	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26075161	26075161	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	34292334	34292334	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	44344989	44344989	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60214522	60214522	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60361771	60361771	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29656247	29656247	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57597553	57597553	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	58331501	58331501	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	65498667	65498667	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23185710	23185710	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23674999	23674999	+	IGR	SNP	C	T	T	rs73555022	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53020330	53020330	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7056583	7056583	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	100163936	100163936	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111391081	111391081	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116333072	116333072	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	117283752	117283752	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146527186	146527186	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146592588	146592588	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149050244	149050244	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149101274	149101274	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262620	149262620	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158665141	158665141	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158712428	158712428	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159249531	159249531	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159527753	159527753	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166717886	166717886	+	IGR	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187601424	187601424	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115376	191115376	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	193726012	193726012	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194159158	194159158	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196826990	196826990	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	196836916	196836916	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238654860	238654860	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400534	247400534	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247997227	247997227	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248286230	248286230	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066062	249066062	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80558507	80558507	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80916906	80916906	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80961871	80961871	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89669167	89669167	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26211328	26211328	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873166	29873166	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873784	29873784	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5273337	5273337	+	IGR	SNP	G	T	T	rs112066381	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14898535	14898535	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	23526454	23526454	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16348140	16348140	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349473	16349473	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16389524	16389524	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17340583	17340583	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34987081	34987081	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103027909	103027909	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107579921	107579922	+	IGR	DEL	TG	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	110767988	110767988	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132349702	132349702	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14139384	14139384	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158067191	158067191	+	IGR	SNP	G	A	A	rs112631908		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17527087	17527087	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176190299	176190299	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994568	194994568	+	IGR	SNP	C	A	A	rs10182060	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210046952	210046952	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	228513248	228513248	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41383890	41383890	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43024348	43024349	+	IGR	DNP	AT	TA	TA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423875	81423875	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81646121	81646121	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084439	83084439	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458725	90458725	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91766603	91766603	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795714	91795714	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800839	91800839	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91884504	91884504	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91888414	91888414	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91944167	91944167	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	143610845	143610845	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	179367317	179367317	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183745553	183745553	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	38568287	38568287	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68606310	68606310	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88366851	88366851	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96473181	96473181	+	IGR	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97783393	97783394	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109339693	109339693	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112998792	112998792	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119409355	119409355	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131425163	131425163	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139402887	139402887	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	141722991	141722991	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165578169	165578170	+	IGR	DNP	TG	AT	AT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179208281	179208281	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182827536	182827536	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	186920945	186920945	+	IGR	SNP	C	G	G	rs113198625		TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43390307	43390307	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355212	63355212	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355948	63355948	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9431265	9431265	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97824017	97824017	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107911796	107911796	+	IGR	SNP	C	A	A	rs111539607	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110285128	110285128	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126847684	126847684	+	IGR	SNP	G	T	T	rs139041558	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161178435	161178435	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165809294	165809294	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170772322	170772322	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305348	20305348	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23689087	23689087	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24787034	24787034	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24787134	24787134	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26740611	26740611	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	32888176	32888176	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	37085880	37085880	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56816399	56816399	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	169766422	169766422	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28503388	28503388	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926582	39926582	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49219225	49219225	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63937713	63937713	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	71874813	71874813	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72260704	72260704	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72294617	72294617	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7517226	7517226	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80776832	80776832	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81266282	81266282	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92525729	92525729	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	93802032	93802032	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109300658	109300658	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144702349	144702349	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281527	145281527	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886258	48886258	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930949	53930949	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55001436	55001436	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55832680	55832680	+	IGR	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56664991	56664991	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57135678	57135678	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217886	57217887	+	IGR	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57249156	57249156	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62609101	62609101	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910261	62910261	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63454307	63454307	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894872	63894872	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88078213	88078213	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96487544	96487544	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106207542	106207542	+	IGR	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134420966	134420966	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136845583	136845583	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143049456	143049456	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143049746	143049746	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43395115	43395115	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58156909	58156909	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	63023423	63023423	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70856828	70856828	+	IGR	SNP	G	A	A	rs148867161	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85892532	85892533	+	IGR	INS	-	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92922179	92922179	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97081062	97081062	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	104817711	104817711	+	IGR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107419667	107419667	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25427644	25427644	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29825847	29825847	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44154031	44154031	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69830279	69830279	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76089433	76089433	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81651929	81651929	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673204	84673204	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674529	84674529	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863527	110863527	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864257	110864257	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114303986	114303986	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115238530	115238530	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122648355	122648355	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124461236	124461236	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134744621	134744621	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14262760	14262760	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712049	144712049	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701897	145701897	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179947	26179947	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	35077784	35077784	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36229372	36229372	+	IGR	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63653620	63653620	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63653632	63653632	+	IGR	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64628468	64628468	+	IGR	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64772232	64772232	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65276091	65276091	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65719160	65719160	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	70182838	70182838	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78579506	78579506	+	IGR	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89368183	89368183	+	IGR	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13537368	13537368	+	IGR	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14551917	14551917	+	IGR	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23556968	23556968	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	23655615	23655615	+	IGR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28661833	28661833	+	IGR	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	8904586	8904587	+	IGR	DNP	GG	AT	AT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70814953	70814953	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAX1	11023	broad.mit.edu	37	10	118896117	118896117	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAX1	11023	broad.mit.edu	37	10	118896117	118896117	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDAC3	7419	broad.mit.edu	37	8	42251819	42251819	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608608	177608608	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177608608	177608608	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEZF1	7716	broad.mit.edu	37	17	56059122	56059122	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEZF1	7716	broad.mit.edu	37	17	56059122	56059122	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133072129	133072129	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133072129	133072129	+	Intron	SNP	A	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133052726	133052726	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133052726	133052726	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100352757	100352757	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100791128	100791128	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100352757	100352757	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62304305	62304305	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62304305	62304305	+	Splice_Site	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12382037	12382037	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12382037	12382037	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53024666	53024666	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53024666	53024666	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98928536	98928536	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98928536	98928536	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR22	114049	broad.mit.edu	37	7	73101344	73101344	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR22	114049	broad.mit.edu	37	7	73101344	73101344	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85600423	85600423	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85658524	85658524	+	Intron	SNP	T	A	A	rs150542176	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177069477	177069477	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177069477	177069477	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39184082	39184082	+	5'UTR	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100934506	100934507	+	Splice_Site	INS	-	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100934506	100934507	+	Splice_Site	INS	-	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167322244	167322244	+	5'UTR	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167322244	167322244	+	5'UTR	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36562436	36562436	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36562436	36562436	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241907974	241907974	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124105754	124105754	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124105754	124105754	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228771916	228771916	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228771916	228771916	+	Silent	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37703180	37703180	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37703180	37703180	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	715997	715997	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141413964	141413964	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141413964	141413964	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66418073	66418073	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPI1	55062	broad.mit.edu	37	17	66418073	66418073	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49374186	49374186	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49374219	49374219	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49374219	49374219	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3	7473	broad.mit.edu	37	17	44851324	44851324	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31567666	31567666	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XG	7499	broad.mit.edu	37	X	2692691	2692691	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XG	7499	broad.mit.edu	37	X	2692794	2692794	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XG	7499	broad.mit.edu	37	X	2692691	2692691	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XG	7499	broad.mit.edu	37	X	2692794	2692794	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168074611	168074611	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168074611	168074611	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56362211	56362211	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56365614	56365614	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56362211	56362211	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR4	114786	broad.mit.edu	37	8	56365614	56365614	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	216974249	216974249	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC6BP1	91419	broad.mit.edu	37	12	58345406	58345406	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC6BP1	91419	broad.mit.edu	37	12	58345406	58345406	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142090048	142090048	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142090048	142090048	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100371476	100371477	+	Splice_Site	INS	-	G	G	rs148800656	by1000genomes	TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100373326	100373327	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	166960176	166960176	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167031857	167031857	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167031857	167031857	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138768597	138768597	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138768597	138768597	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145274897	145274897	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145274897	145274897	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND2B	130617	broad.mit.edu	37	2	220073185	220073185	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND2B	130617	broad.mit.edu	37	2	220073185	220073185	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72027129	72027129	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72027129	72027129	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763833	77763833	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77761315	77761315	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763833	77763833	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP42	132625	broad.mit.edu	37	4	188924008	188924008	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP42	132625	broad.mit.edu	37	4	188924008	188924008	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68251269	68251269	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68268648	68268648	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZG16B	124220	broad.mit.edu	37	16	2880225	2880225	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57646630	57646630	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57646630	57646630	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101152935	101152935	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101153123	101153123	+	Translation_Start_Site	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101152935	101152935	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101153123	101153123	+	Translation_Start_Site	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44801258	44801258	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44801258	44801258	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219510761	219510761	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219510761	219510761	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154978	22154978	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22154978	22154978	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF282	8427	broad.mit.edu	37	7	148921335	148921335	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45131769	45131769	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF334	55713	broad.mit.edu	37	20	45131769	45131769	+	Intron	SNP	T	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354A	6940	broad.mit.edu	37	5	178139390	178139390	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354A	6940	broad.mit.edu	37	5	178139390	178139390	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49559353	49559353	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49559353	49559353	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22671869	22671869	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22902056	22902056	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22671869	22671869	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22902056	22902056	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31038695	31038695	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37976118	37976118	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37976118	37976118	+	Missense_Mutation	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF598	90850	broad.mit.edu	37	16	2050352	2050352	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63726618	63726618	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	64023483	64023483	+	5'UTR	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63680006	63680006	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149191498	149191499	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149191498	149191499	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149151031	149151031	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803686	185803686	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803686	185803686	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965693	88965693	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965693	88965693	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57765944	57765944	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57765944	57765944	+	5'Flank	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053457	238053457	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053457	238053457	+	Missense_Mutation	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	50121455	50121455	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	50121455	50121455	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58552022	58552022	+	Intron	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDC	79364	broad.mit.edu	37	3	126180702	126180702	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZXDC	79364	broad.mit.edu	37	3	126180702	126180702	+	Silent	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30986327	30986327	+	5'UTR	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51821252	51821252	+	RNA	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30900321	30900321	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52501096	52501096	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564834	74564834	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98126388	98126388	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856858	19856858	+	RNA	SNP	A	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22447104	22447104	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631182	22631182	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25492500	25492500	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84949778	84949778	+	5'Flank	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148882242	148882242	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148887761	148887761	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148891596	148891596	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28792639	28792639	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190788271	190788271	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89291915	89291915	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428941	89428941	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533620	89533620	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90043562	90043562	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90085995	90085995	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90211645	90211645	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260283	90260283	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	134925032	134925032	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933200	9933201	+	Intron	DNP	CA	TT	TT			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028810	142028810	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099485	142099485	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206927	142206927	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247121	142247121	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142470668	142470668	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148964289	148964289	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370430	63370430	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21278219	21278219	+	RNA	DEL	G	-	-			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517364	66517364	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676626	84676626	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84677285	84677285	+	5'Flank	SNP	G	C	C			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	99967238	99967238	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155255036	155255036	+	Silent	SNP	C	G	G			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51821252	51821252	+	RNA	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	98126388	98126388	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	64321150	64321150	+	RNA	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19856858	19856858	+	RNA	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22337665	22337665	+	Intron	SNP	A	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22447104	22447104	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631182	22631182	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25492500	25492500	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84949778	84949778	+	5'Flank	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29801377	29801377	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148882242	148882242	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148887761	148887761	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148891596	148891596	+	RNA	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131187500	131187500	+	5'Flank	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190788271	190788271	+	Silent	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89291915	89291915	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89428941	89428941	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533620	89533620	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90043562	90043562	+	Intron	SNP	C	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90211645	90211645	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260283	90260283	+	Intron	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120116512	120116512	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4661924	4661924	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	134925032	134925032	+	Intron	SNP	C	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933200	9933201	+	Intron	DNP	CA	TT	TT			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142099485	142099485	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206927	142206927	+	Intron	SNP	A	G	G			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247121	142247121	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142470668	142470668	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148964289	148964289	+	RNA	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407328	38407328	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370430	63370430	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21278219	21278219	+	RNA	DEL	G	-	-			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517364	66517364	+	Intron	SNP	G	T	T			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676626	84676626	+	Intron	SNP	G	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84677285	84677285	+	5'Flank	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	99967238	99967238	+	Intron	SNP	T	A	A			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136065859	136065859	+	Intron	SNP	G	C	C			TCGA-64-1676-01A-01W-0928-08	TCGA-64-1676-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
