Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7568003	7568003	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7714815	7714815	+	Intron	SNP	C	T	T	rs141719602	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20698213	20698213	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48261806	48261806	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD10	55347	broad.mit.edu	37	3	111710449	111710449	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD10	80724	broad.mit.edu	37	12	112150556	112150556	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76205836	76205836	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89402294	89402294	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15584413	15584413	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACMSD	130013	broad.mit.edu	37	2	135619539	135619539	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRC	93953	broad.mit.edu	37	X	70823695	70823695	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20487225	20487225	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18152600	18152600	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123333743	123333743	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM22	53616	broad.mit.edu	37	7	87772294	87772294	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106111017	106111017	+	RNA	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1598981	1598981	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45650011	45650011	+	Missense_Mutation	SNP	G	A	A	rs80190930		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132002737	132002737	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP11	119385	broad.mit.edu	37	10	88768270	88768270	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL1	10768	broad.mit.edu	37	1	110563488	110563488	+	Intron	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878107	32878107	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4889810	4889810	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243788147	243788147	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOXE3	59344	broad.mit.edu	37	17	8018293	8018293	+	Silent	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118076813	118076813	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38462155	38462166	+	Intron	DEL	TATCTATCTATC	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38514911	38514911	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876107	117876107	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101472952	101472952	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S2	8905	broad.mit.edu	37	X	15870449	15870449	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40827964	40827964	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36069551	36069551	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141036183	141036183	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161039489	161039489	+	5'UTR	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57868455	57868455	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73057894	73057894	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46233223	46233223	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235377416	235377416	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155317424	155317424	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155317620	155317620	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62559457	62559457	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL1	171023	broad.mit.edu	37	20	31019382	31019382	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160144297	160144297	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52539113	52539113	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B2	57198	broad.mit.edu	37	1	154300287	154300287	+	5'Flank	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50271905	50271905	+	Nonsense_Mutation	SNP	C	A	A	rs140655722		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3556430	3556430	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28844860	28844860	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69583230	69583231	+	Intron	DEL	GT	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND7	222389	broad.mit.edu	37	10	13489229	13489229	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22067158	22067158	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26248666	26248666	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26468505	26468505	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26452057	26452057	+	Silent	SNP	A	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116633907	116633907	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf35	256329	broad.mit.edu	37	11	555798	555798	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf34	84915	broad.mit.edu	37	12	110206380	110206380	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923219	24923219	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf63	25764	broad.mit.edu	37	15	44093484	44093484	+	Intron	SNP	T	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19644519	19644519	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30991959	30991959	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170952642	170952642	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20150172	20150172	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200824549	200824549	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf65	130951	broad.mit.edu	37	2	74855368	74855368	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf3	401152	broad.mit.edu	37	4	120221511	120221511	+	Silent	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5AR1	728	broad.mit.edu	37	19	47823845	47823847	+	In_Frame_Del	DEL	TCG	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175722195	175722195	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf15	29113	broad.mit.edu	37	6	31079340	31079340	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39610121	39610121	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906538	120906538	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf60	154743	broad.mit.edu	37	7	112579614	112579614	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57347292	57347292	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf68	55064	broad.mit.edu	37	9	4629136	4629136	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86356314	86356314	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140880937	140880937	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53753935	53753935	+	Intron	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1270419	1270419	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK1	84254	broad.mit.edu	37	17	3776779	3776779	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN2	57513	broad.mit.edu	37	17	73502640	73502640	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90581002	90581002	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105456052	105456052	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40947574	40947574	+	3'UTR	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC56	28958	broad.mit.edu	37	17	40947590	40947590	+	3'UTR	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137626274	137626274	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24498705	24498705	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24535931	24535931	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95158513	95158513	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85956211	85956211	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK10	8558	broad.mit.edu	37	16	89758876	89758876	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	21198357	21198357	+	Intron	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDS1	1040	broad.mit.edu	37	4	85530716	85530716	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56841163	56841163	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55855413	55855413	+	Missense_Mutation	SNP	C	A	A	rs60054861	byFrequency;by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151509762	151509762	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93540598	93540600	+	In_Frame_Del	DEL	ATT	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7803213	7803213	+	Splice_Site	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA2	1135	broad.mit.edu	37	8	27328547	27328547	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKMT1A	548596	broad.mit.edu	37	15	43990807	43990807	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN18	51208	broad.mit.edu	37	3	137717828	137717828	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC6A	93978	broad.mit.edu	37	12	8618354	8618354	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154520566	154520566	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122862308	122862308	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212729	62212729	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN3	1266	broad.mit.edu	37	1	95368680	95368680	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58568128	58568128	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT4	4850	broad.mit.edu	37	7	135080502	135080502	+	Nonsense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40837357	40837357	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76513396	76513396	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32163799	32163799	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94057585	94057585	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55933838	55933838	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189856212	189856212	+	Splice_Site	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111118389	111118389	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47410956	47410956	+	Splice_Site	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L1	90993	broad.mit.edu	37	11	46332651	46332651	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L1	90993	broad.mit.edu	37	11	46332680	46332680	+	Silent	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSH1	1442	broad.mit.edu	37	17	61972786	61972786	+	Intron	SNP	G	T	T	rs61763998		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3076739	3076739	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113484921	113484921	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113697996	113697996	+	Intron	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1E	1454	broad.mit.edu	37	22	38696822	38696822	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CS	1431	broad.mit.edu	37	12	56669989	56669989	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41471703	41471703	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL3	392360	broad.mit.edu	37	9	90387899	90387899	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432597	117432597	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111758260	111758260	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111776136	111776136	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf56	63932	broad.mit.edu	37	X	118678385	118678385	+	Silent	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36090127	36090128	+	Intron	DNP	CC	AA	AA			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156746826	156746826	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74636074	74636074	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15769201	15769201	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72014681	72014681	+	3'UTR	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85906102	85906102	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK2	23604	broad.mit.edu	37	15	64332346	64332346	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZAP2	9802	broad.mit.edu	37	12	51634866	51634866	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZAP2	9802	broad.mit.edu	37	12	51636127	51636127	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104427647	104427647	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36778975	36778975	+	Silent	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX46	9879	broad.mit.edu	37	5	134130829	134130829	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169173603	169173603	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFA	1676	broad.mit.edu	37	1	10527261	10527261	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFFA	1676	broad.mit.edu	37	1	10527291	10527291	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	323340	323340	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231830502	231830502	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31525341	31525341	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7701598	7701598	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65878517	65878517	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94337653	94337653	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94337751	94337751	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225658141	225658141	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOT1L	84444	broad.mit.edu	37	19	2199823	2199823	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29104379	29104379	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP10	11221	broad.mit.edu	37	1	221879756	221879756	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	345916	345916	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP5P	574029	broad.mit.edu	37	1	228786715	228786715	+	3'UTR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71795348	71795348	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62126429	62126429	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB5	374786	broad.mit.edu	37	17	28405416	28405416	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43936306	43936306	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHD1	80303	broad.mit.edu	37	2	233527523	233527523	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B2	8892	broad.mit.edu	37	14	75469779	75469779	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B2	8892	broad.mit.edu	37	14	75474434	75474434	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK4	2005	broad.mit.edu	37	1	205589516	205589516	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK4	2005	broad.mit.edu	37	1	205589655	205589655	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK4	2005	broad.mit.edu	37	1	205589806	205589806	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD2	255520	broad.mit.edu	37	4	141464740	141464752	+	Splice_Site	DEL	TGTGAGTATTAAA	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27306061	27306061	+	Missense_Mutation	SNP	G	C	C	rs138622931	byFrequency	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27308451	27308451	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN3	90187	broad.mit.edu	37	20	39990047	39990047	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6937293	6937293	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41568699	41568699	+	Intron	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89521672	89521672	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94067941	94067941	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134670588	134670588	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37864870	37864870	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50680512	50680512	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC3	51614	broad.mit.edu	37	20	34143975	34143975	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23716548	23716548	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETF1	2107	broad.mit.edu	37	5	137846207	137846207	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EWSR1	2130	broad.mit.edu	37	22	29693786	29693786	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD2	55218	broad.mit.edu	37	14	69695691	69695691	+	Silent	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133602302	133602302	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94818035	94818035	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM102B	284611	broad.mit.edu	37	1	109171002	109171002	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM108C1	58489	broad.mit.edu	37	15	81041780	81041780	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175B	23172	broad.mit.edu	37	10	126505135	126505135	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM186B	84070	broad.mit.edu	37	12	49999268	49999268	+	5'UTR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190B	54462	broad.mit.edu	37	10	86131442	86131442	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150387102	150387102	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22F	54754	broad.mit.edu	37	9	97082700	97082700	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45A	404636	broad.mit.edu	37	10	120867611	120867611	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068141	190068141	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43629338	43629338	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45644916	45644916	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL2	25827	broad.mit.edu	37	3	33400411	33400411	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159277441	159277441	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3A	2214	broad.mit.edu	37	1	161512661	161512661	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	137793040	137793040	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32097284	32097284	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10357	55701	broad.mit.edu	37	14	21550590	21550590	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147063058	147063058	+	Missense_Mutation	SNP	G	C	C	rs149919226		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159654341	159654341	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89405072	89405072	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89405092	89405092	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOSB	2354	broad.mit.edu	37	19	45973886	45973886	+	Splice_Site	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4798715	4798715	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGS	2356	broad.mit.edu	37	9	130567002	130567002	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12627781	12627781	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL5	56884	broad.mit.edu	37	4	162680590	162680590	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319478	71319478	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17445758	17445758	+	Intron	SNP	A	T	T	rs139065020		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161277868	161277868	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161578752	161578752	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22748963	22748963	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBE1	2632	broad.mit.edu	37	3	81539441	81539441	+	3'UTR	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109085361	109085361	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153668831	153668831	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121740509	121740509	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIS1	148979	broad.mit.edu	37	1	54060157	54060157	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT25D2	23127	broad.mit.edu	37	1	183932989	183932989	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT8D1	55830	broad.mit.edu	37	3	52731647	52731647	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB2L1	10399	broad.mit.edu	37	5	180668575	180668575	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131038338	131038338	+	5'Flank	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37792025	37792025	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAA1	8733	broad.mit.edu	37	8	145140004	145140004	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132458235	132458235	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826549	46826549	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR132	29933	broad.mit.edu	37	14	105517991	105517991	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR55	9290	broad.mit.edu	37	2	231774717	231774717	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112723882	112723882	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP1	9737	broad.mit.edu	37	X	101910606	101910606	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19873227	19873227	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA4	2893	broad.mit.edu	37	11	105483079	105483079	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13715803	13715803	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13906490	13906490	+	Silent	SNP	G	A	A	rs142203984		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7503364	7503364	+	Silent	SNP	G	C	C	rs138702582		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP10	85865	broad.mit.edu	37	7	89984473	89984473	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55145278	55145278	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58147229	58147230	+	Intron	DEL	AC	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BI	8346	broad.mit.edu	37	6	26273272	26273272	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71000593	71000593	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN2	3151	broad.mit.edu	37	1	26801731	26801731	+	3'UTR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245023749	245023749	+	Nonsense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA1	3198	broad.mit.edu	37	7	27135384	27135384	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPRT1	3251	broad.mit.edu	37	X	133609244	133609244	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA4	3308	broad.mit.edu	37	5	132439557	132439557	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA4	3308	broad.mit.edu	37	5	132439655	132439655	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22192107	22192107	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA3	94031	broad.mit.edu	37	4	8305896	8305896	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209113181	209113181	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFIH1	64135	broad.mit.edu	37	2	163134144	163134144	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65684634	65684634	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99472913	99472913	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130416851	130416851	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37985700	37985700	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68647143	68647143	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL26	55801	broad.mit.edu	37	12	68619203	68619203	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59949775	59949775	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44432730	44432730	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9442085	9442085	+	Intron	SNP	A	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237300616	237300616	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52240860	52240860	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15688794	15688794	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35229122	35229122	+	Silent	SNP	C	T	T	rs142988236		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73765166	73765166	+	Intron	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26961560	26961560	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6863504	6863504	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24722075	24722075	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120276	94120276	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95518698	95518698	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108278606	108278606	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100092805	100092805	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1683	80726	broad.mit.edu	37	19	18376264	18376264	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36888966	36888966	+	5'UTR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113388995	113388995	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17831267	17831267	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200973787	200973787	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901154	51901154	+	Missense_Mutation	SNP	G	T	T	rs142732898	byFrequency;by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173710838	173710838	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86880597	86880597	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52886337	52886337	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56085908	56085908	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42162660	42162660	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARGE	9215	broad.mit.edu	37	22	33700318	33700318	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBH	81606	broad.mit.edu	37	2	30480308	30480308	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55147116	55147116	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC162632	162632	broad.mit.edu	37	17	16705576	16705576	+	RNA	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC220429	220429	broad.mit.edu	37	13	50466975	50466975	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728989	728989	broad.mit.edu	37	1	146515988	146515988	+	5'Flank	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT4	254531	broad.mit.edu	37	15	34652261	34652261	+	Intron	SNP	C	A	A	rs72625170	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82407790	82407790	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456132	82456132	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360646	42360646	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105502865	105502865	+	3'UTR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141643712	141643712	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141643856	141643856	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141777540	141777540	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57600282	57600282	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170007439	170007439	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115560692	115560692	+	Nonsense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46477803	46477803	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS2	84445	broad.mit.edu	37	10	102763815	102763815	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA3	4102	broad.mit.edu	37	X	151935329	151935329	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEE1	57692	broad.mit.edu	37	X	75649049	75649049	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179192648	179192648	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56189376	56189376	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136709490	136709490	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1798834	1798834	+	Intron	DEL	T	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3778291	3778291	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112418659	112418659	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127335987	127335987	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42854232	42854232	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37242563	37242563	+	Silent	SNP	C	G	G	rs140793410		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIER2	54531	broad.mit.edu	37	19	334524	334524	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR526A1	574475	broad.mit.edu	37	19	54209503	54209503	+	5'Flank	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR655	724025	broad.mit.edu	37	14	101515089	101515089	+	5'Flank	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131113930	131113930	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	27964405	27964405	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104747597	104747597	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118359361	118359361	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP10	4319	broad.mit.edu	37	11	102650210	102650210	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP20	9313	broad.mit.edu	37	11	102480574	102480574	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNS1	55329	broad.mit.edu	37	15	56736859	56736859	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113238174	113238174	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17949583	17949583	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS17	51373	broad.mit.edu	37	7	56022897	56022897	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31726640	31726640	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49927461	49927461	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA2	9219	broad.mit.edu	37	11	62363320	62363320	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121463151	121463151	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8976428	8976428	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077953	9077953	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10404795	10404795	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA25	80018	broad.mit.edu	37	12	112528570	112528570	+	Silent	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175184875	175184875	+	Nonsense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15448505	15448505	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54911422	54911422	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB5	4711	broad.mit.edu	37	3	179332786	179332786	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152500637	152500637	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21556118	21556119	+	Intron	DNP	TG	AA	AA			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170870	45170870	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73536718	73536718	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29559717	29559717	+	Splice_Site	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68225105	68225105	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKB1	4790	broad.mit.edu	37	4	103505718	103505718	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34262526	34262526	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103950041	103950041	+	Splice_Site	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236212121	236212121	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36976076	36976076	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124979454	124979454	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKD2	85409	broad.mit.edu	37	5	1034329	1034329	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173997377	173997377	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56413549	56413549	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56482063	56482063	+	Splice_Site	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101087077	101087077	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOBOX	135935	broad.mit.edu	37	7	144096961	144096961	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6585821	6585821	+	3'UTR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6585920	6585920	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6585979	6585979	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150698285	150698285	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15290919	15290919	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32712263	32712263	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107880462	107880462	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52303128	52303128	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C3	51251	broad.mit.edu	37	7	33057107	33057107	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104208701	104208701	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849960	156849960	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB1	4924	broad.mit.edu	37	19	49424449	49424449	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB1	4924	broad.mit.edu	37	19	49425018	49425018	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134049375	134049375	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818416	101818416	+	RNA	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24878023	24878023	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28211876	28211876	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128703214	128703214	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123526198	123526198	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	124030091	124030091	+	Splice_Site	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9968409	9968409	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA3	80207	broad.mit.edu	37	19	46032614	46032614	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67414174	67414174	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10C1	442194	broad.mit.edu	37	6	29407927	29407927	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158435885	158435885	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158436017	158436017	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678286	130678286	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D2	120776	broad.mit.edu	37	11	6912807	6912807	+	3'UTR	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M7	391196	broad.mit.edu	37	1	248487558	248487558	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813843	248813843	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2V2	285659	broad.mit.edu	37	5	180582569	180582569	+	Silent	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20215671	20215671	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216425	78216425	+	Silent	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119116091	119116091	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25446426	25446426	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154919293	154919293	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072378	134072378	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141243094	141243094	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141243969	141243969	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH9	5101	broad.mit.edu	37	13	67802360	67802360	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256157	140256157	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA6	56142	broad.mit.edu	37	5	140209494	140209494	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712736	140712736	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140730766	140730766	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72295646	72295646	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144865913	144865913	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96761377	96761377	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56746482	56746482	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB3	5209	broad.mit.edu	37	10	6273181	6273181	+	Intron	SNP	T	C	C	rs35890201		TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD2	267002	broad.mit.edu	37	1	249212112	249212112	+	Silent	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77378659	77378659	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129767550	129767550	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71840676	71840676	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18936753	18936753	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47623005	47623005	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118502601	118502601	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB3	653583	broad.mit.edu	37	19	44001226	44001226	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77594833	77594833	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209142380	209142380	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15425673	15425673	+	Splice_Site	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM2	57605	broad.mit.edu	37	12	123481747	123481747	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL4	143689	broad.mit.edu	37	11	94316682	94316682	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81183355	81183355	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2153583	2153583	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51890718	51890718	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKLR	5313	broad.mit.edu	37	1	155271149	155271149	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28843969	28843969	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8130941	8130941	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8709845	8709845	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9417782	9417782	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145001523	145001523	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4B	153478	broad.mit.edu	37	5	182155	182155	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43967968	43967968	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100850884	100850885	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA3	55558	broad.mit.edu	37	X	153689814	153689814	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6029467	6029467	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA2	57104	broad.mit.edu	37	11	821651	821651	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24806705	24806705	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38145512	38145512	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14542921	14542921	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F3	5459	broad.mit.edu	37	5	145719212	145719212	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39246901	39246901	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	25292809	25292809	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2C	5522	broad.mit.edu	37	4	6473956	6473956	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3328444	3328444	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522899	23522899	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69013728	69013728	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64795341	64795341	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48817449	48817449	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38B	55119	broad.mit.edu	37	1	109242068	109242068	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS33	260429	broad.mit.edu	37	16	2836061	2836061	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAP	5660	broad.mit.edu	37	10	73577081	73577081	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD1	5707	broad.mit.edu	37	2	231945065	231945065	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89692883	89692883	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77265123	77265123	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198713173	198713173	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8389207	8389207	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL4	81607	broad.mit.edu	37	1	161044216	161044216	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL4	81607	broad.mit.edu	37	1	161044390	161044390	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGO1	26108	broad.mit.edu	37	15	55881112	55881112	+	5'Flank	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB38	23682	broad.mit.edu	37	11	87847182	87847182	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109367852	109367852	+	Nonsense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4773290	4773290	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114377779	114377779	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM33	155435	broad.mit.edu	37	7	155457829	155457829	+	Intron	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR1	23186	broad.mit.edu	37	14	103173935	103173935	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL	5965	broad.mit.edu	37	12	21636334	21636334	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS11	8786	broad.mit.edu	37	16	321456	321456	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	100994191	100994191	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63890418	63890418	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104955058	104955058	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF133	168433	broad.mit.edu	37	7	122338097	122338097	+	Silent	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF43	54894	broad.mit.edu	37	17	56434870	56434870	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201958702	201958702	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE	6120	broad.mit.edu	37	2	210867517	210867517	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE	6120	broad.mit.edu	37	2	210867594	210867594	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99140513	99140513	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886466	237886466	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237919580	237919580	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134987334	134987334	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130530634	130530634	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128926927	128926927	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAT1	6303	broad.mit.edu	37	X	23803931	23803931	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP3	10067	broad.mit.edu	37	1	155228742	155228742	+	Missense_Mutation	SNP	C	T	T	rs143130366	byFrequency	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB2A2	4250	broad.mit.edu	37	11	62040517	62040517	+	3'UTR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38766584	38766584	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38798464	38798464	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50201263	50201263	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24A	10802	broad.mit.edu	37	5	134023904	134023904	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151337134	151337136	+	In_Frame_Del	DEL	CCT	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48062801	48062801	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95089887	95089887	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47162194	47162194	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42088452	42088452	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42088829	42088829	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56920945	56920945	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25762199	25762200	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A13	9390	broad.mit.edu	37	3	38311878	38311878	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A5	6584	broad.mit.edu	37	5	131730013	131730013	+	3'UTR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A2	25769	broad.mit.edu	37	9	19520910	19520910	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A4	120103	broad.mit.edu	37	11	92899090	92899090	+	Silent	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24902295	24902295	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10976904	10976904	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A3	6531	broad.mit.edu	37	5	1394811	1394811	+	3'UTR	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23243287	23243287	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103128623	103128623	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A6	10479	broad.mit.edu	37	X	135098878	135098878	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74915502	74915502	+	Silent	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD2	6610	broad.mit.edu	37	6	109762593	109762593	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPDL3B	27293	broad.mit.edu	37	1	28261865	28261865	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84371233	84371233	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-12	100033424	broad.mit.edu	37	15	25322119	25322119	+	5'Flank	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPF	6636	broad.mit.edu	37	12	96254927	96254927	+	Intron	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65617697	65617697	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179318019	179318019	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186544288	186544288	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106976816	106976816	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172834887	172834887	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS3	201305	broad.mit.edu	37	17	4337360	4337360	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB3	90864	broad.mit.edu	37	16	1828177	1828177	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158636110	158636110	+	Missense_Mutation	SNP	C	T	T	rs145972324	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158641096	158641096	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131337474	131337474	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2812607	2812607	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54706730	54706730	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH1	54434	broad.mit.edu	37	12	109186349	109186349	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149492766	149492766	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149519225	149519225	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52682477	52682477	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP1	26872	broad.mit.edu	37	7	89793973	89793973	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP4	79689	broad.mit.edu	37	7	87913242	87913242	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38L	23012	broad.mit.edu	37	12	27475204	27475204	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	892283	892283	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75490824	75490824	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75597420	75597420	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113198749	113198749	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138347839	138347839	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN1	6853	broad.mit.edu	37	X	47435887	47435887	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152473324	152473324	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910535	132910535	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70598761	70598761	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68661433	68661433	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159463125	159463125	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R30	259293	broad.mit.edu	37	12	11286483	11286483	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71609796	71609796	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688415	30688415	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35242089	35242089	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560581	59560581	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIA1	7072	broad.mit.edu	37	2	70457852	70457852	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43775098	43775098	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMP4	7079	broad.mit.edu	37	3	12200325	12200325	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98146861	98146861	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR10	81793	broad.mit.edu	37	4	38776982	38776983	+	Missense_Mutation	DNP	AA	TT	TT			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81626935	81626935	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC7	79905	broad.mit.edu	37	16	19027866	19027866	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63B	55362	broad.mit.edu	37	6	44115861	44115861	+	Intron	DEL	A	-	-			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136380688	136380688	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM95	339168	broad.mit.edu	37	17	7258657	7258657	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150415097	150415097	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59750834	59750834	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138189108	138189108	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55037999	55037999	+	3'UTR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM67	440730	broad.mit.edu	37	1	231334786	231334786	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45028843	45028843	+	Translation_Start_Site	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP13	9319	broad.mit.edu	37	5	911998	911998	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54949608	54949608	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4AP	26133	broad.mit.edu	37	20	33665863	33665863	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31324995	31324995	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234894470	234894470	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10	80705	broad.mit.edu	37	2	99689364	99689364	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC4	10078	broad.mit.edu	37	11	2424159	2424159	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC12	54970	broad.mit.edu	37	11	113230118	113230118	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA4B	80086	broad.mit.edu	37	2	220136175	220136175	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP3	10426	broad.mit.edu	37	13	113176788	113176788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP3	10426	broad.mit.edu	37	13	113181801	113181801	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72242363	72242363	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34934859	34934859	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157000687	157000687	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118247488	118247488	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118263480	118263480	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33495435	33495435	+	Intron	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158971692	158971692	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773573	229773573	+	Silent	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126220016	126220016	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216595491	216595491	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640047	57640047	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8989494	8989494	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8998387	8998387	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129060313	129060313	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2D	257313	broad.mit.edu	37	3	190993092	190993092	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38450684	38450684	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	35882696	35882696	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68867841	68867841	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20265152	20265152	+	IGR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54457975	54457975	+	IGR	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	62331731	62331731	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22499629	22499629	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148855972	148855972	+	IGR	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158669378	158669378	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161070137	161070137	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	70996584	70996584	+	IGR	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862698	10862698	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	129276671	129276671	+	IGR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43053675	43053675	+	IGR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	98254304	98254304	+	IGR	SNP	T	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	196713753	196713753	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	196713969	196713969	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78003911	78003911	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105752970	105752970	+	IGR	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304962	20304962	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	32427887	32427887	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80662736	80662736	+	IGR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108635084	108635084	+	IGR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707622	144707622	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	85010521	85010521	+	IGR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	26868334	26868334	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82530427	82530427	+	IGR	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44175111	44175111	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78842421	78842421	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743480	136743480	+	IGR	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146036727	146036727	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68004272	68004272	+	IGR	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92477269	92477269	+	IGR	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77909509	77909509	+	Intron	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS4B	9525	broad.mit.edu	37	18	61067251	61067251	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG1	340547	broad.mit.edu	37	X	107315990	107315990	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54614735	54614735	+	Intron	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27151251	27151251	+	Intron	SNP	G	C	C	rs141258963	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASL	8976	broad.mit.edu	37	7	123332669	123332669	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85707201	85707201	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85707203	85707203	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9503470	9503470	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128480480	128480480	+	Intron	SNP	G	A	A	rs138493420	by1000genomes	TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR63	126820	broad.mit.edu	37	1	85559237	85559237	+	Silent	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR69	164781	broad.mit.edu	37	2	228786187	228786187	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	31001158	31001158	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	31024633	31024633	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6023892	6023892	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLB	9942	broad.mit.edu	37	3	38415993	38415993	+	Silent	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183472281	183472281	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC9	51114	broad.mit.edu	37	X	128962912	128962912	+	Intron	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC3	7547	broad.mit.edu	37	X	136649310	136649310	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF213	7760	broad.mit.edu	37	16	3190770	3190770	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21706452	21706452	+	Silent	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF439	90594	broad.mit.edu	37	19	11978433	11978433	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53357494	53357494	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF486	90649	broad.mit.edu	37	19	20296723	20296723	+	Intron	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF493	284443	broad.mit.edu	37	19	21606273	21606273	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF501	115560	broad.mit.edu	37	3	44775991	44775991	+	Silent	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64967177	64967177	+	Silent	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64967739	64967739	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22364130	22364130	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84520344	84520344	+	Intron	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	53277	53277	+	Translation_Start_Site	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF786	136051	broad.mit.edu	37	7	148769014	148769014	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23545212	23545212	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102171778	102171778	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN22	342945	broad.mit.edu	37	19	58849907	58849907	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187703805	187703805	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55065336	55065336	+	RNA	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22928086	22928086	+	Intron	SNP	T	G	G			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89952806	89952806	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122118	90122118	+	RNA	SNP	G	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124270	142124270	+	Intron	SNP	C	A	A			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
