Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
LPCAT1	79888	genome.wustl.edu	36	5	1532751	1532751	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	1532751	1532751	LPCAT1	5	G	G	A	44
OR51G1	79324	genome.wustl.edu	36	11	4901325	4901325	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	4901325	4901325	OR51G1	11	A	A	G	14
FERMT1	55612	genome.wustl.edu	36	20	6005909	6005909	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6005909	6005909	FERMT1	20	C	C	T	23
TP53	7157	genome.wustl.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7519119	7519119	TP53	17	T	T	C	51
KCNAB3	9196	genome.wustl.edu	36	17	7768240	7768240	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	7768240	7768240	KCNAB3	17	C	C	T	17
TAF1B	9014	genome.wustl.edu	36	2	9991399	9991399	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	9991399	9991399	TAF1B	2	T	T	A	52
LOC729602	729602	genome.wustl.edu	36	18	11619696	11619696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	11619696	11619696	LOC729602	18	C	C	T	19
MAST1	22983	genome.wustl.edu	36	19	12830432	12830432	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12830432	12830432	MAST1	19	G	G	C	33
DLC1	10395	genome.wustl.edu	36	8	13295574	13295574	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	13295574	13295574	DLC1	8	C	C	T	24
ENSG00000184624		genome.wustl.edu	36	18	15261461	15261461	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15261461	15261461	ENSG00000184624	18	T	T	C	49
C18orf8	29919	genome.wustl.edu	36	18	19354206	19354206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19354206	19354206	C18orf8	18	G	G	A	39
CYTSB	92521	genome.wustl.edu	36	17	20048888	20048888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20048888	20048888	CYTSB	17	T	T	C	50
TMEM159	57146	genome.wustl.edu	36	16	21098357	21098357	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	21098357	21098357	TMEM159	16	C	C	T	31
ZNF493	284443	genome.wustl.edu	36	19	21379800	21379800	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21379800	21379800	ZNF493	19	A	A	G	15
TRA@	6955	genome.wustl.edu	36	14	22001981	22001981	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22001981	22001981	TRA@	14	A	A	C	7
RNF160	26046	genome.wustl.edu	36	21	29225362	29225362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29225362	29225362	RNF160	21	G	G	T	47
NR0B1	190	genome.wustl.edu	36	X	30236262	30236262	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	30236262	30236262	NR0B1	23	G	G	A	44
QSER1	79832	genome.wustl.edu	36	11	32954531	32954531	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	32954531	32954531	QSER1	11	T	T	C	51
BBS9	27241	genome.wustl.edu	36	7	33364087	33364087	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33364087	33364087	BBS9	7	A	A	G	16
ANLN	54443	genome.wustl.edu	36	7	36433083	36433083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36433083	36433083	ANLN	7	G	G	A	37
TSHZ3	57616	genome.wustl.edu	36	19	36461918	36461918	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	36461918	36461918	TSHZ3	19	G	G	A	33
PTPRT	11122	genome.wustl.edu	36	20	40160598	40160598	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	40160598	40160598	PTPRT	20	C	C	T	28
IFT52	51098	genome.wustl.edu	36	20	41704678	41704678	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41704678	41704678	IFT52	20	G	G	T	35
COL6A1	1291	genome.wustl.edu	36	21	46246965	46246965	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46246965	46246965	COL6A1	21	C	C	G	23
HMGCR	3156	genome.wustl.edu	36	5	74682418	74682418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	74682418	74682418	HMGCR	5	C	C	G	30
PPBP	5473	genome.wustl.edu	36	4	75072567	75072567	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	75072567	75072567	PPBP	4	G	G	T	48
DLG2	1740	genome.wustl.edu	36	11	82860373	82860373	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	82860373	82860373	DLG2	11	C	C	T	23
LRRIQ1	84125	genome.wustl.edu	36	12	84042150	84042150	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	84042150	84042150	LRRIQ1	12	T	T	C	54
GRID2	2895	genome.wustl.edu	36	4	94225441	94225441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	94225441	94225441	GRID2	4	G	G	T	45
HAL	3034	genome.wustl.edu	36	12	94894370	94894370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	94894370	94894370	HAL	12	C	C	G	31
SNRNP200	23020	genome.wustl.edu	36	2	96316472	96316472	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	96316472	96316472	SNRNP200	2	T	T	C	56
ENSG00000211954	0	genome.wustl.edu	36	14	105876484	105876484	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105876484	105876484	ENSG00000211954	14	T	T	C	57
C10orf79	80217	genome.wustl.edu	36	10	105917365	105917365	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105917365	105917365	C10orf79	10	G	G	C	36
SIDT1	54847	genome.wustl.edu	36	3	114812567	114812567	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	114812567	114812567	SIDT1	3	C	C	T	31
GLI2	2736	genome.wustl.edu	36	2	121401446	121401446	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	121401446	121401446	GLI2	2	C	C	T	23
CRTAM	56253	genome.wustl.edu	36	11	122231688	122231688	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	122231688	122231688	CRTAM	11	G	G	T	42
LAMA2	3908	genome.wustl.edu	36	6	129844113	129844113	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	129844113	129844113	LAMA2	6	G	G	A	36
L3MBTL3	84456	genome.wustl.edu	36	6	130418077	130418077	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	130418077	130418077	L3MBTL3	6	G	G	A	39
PCDH1	5097	genome.wustl.edu	36	5	141224972	141224972	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	141224972	141224972	PCDH1	5	G	G	A	39
MED12L	116931	genome.wustl.edu	36	3	152560983	152560983	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	152560983	152560983	MED12L	3	C	C	T	22
HK3	3101	genome.wustl.edu	36	5	176243669	176243669	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	176243669	176243669	HK3	5	G	G	A	38
GPR158	57512	genome.wustl.edu	36	10	25927883	25927883	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	25927883	25927883	GPR158	10	C	C	T	31
SLIT1	6585	genome.wustl.edu	36	10	98792711	98792711	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	C	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	98792711	98792711	SLIT1	10	G	G	C	43
FSHB	2488	genome.wustl.edu	36	11	30211794	30211794	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	30211794	30211794	FSHB	11	T	T	C	51
CREB3L1	90993	genome.wustl.edu	36	11	46289268	46289268	+	Silent	SNP	G	G	A		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	46289268	46289268	CREB3L1	11	G	G	A	38
GRB7	2886	genome.wustl.edu	36	17	35156647	35156647	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35156647	35156647	GRB7	17	C	C	T	27
ITIH3	3699	genome.wustl.edu	36	3	52808870	52808870	+	Missense_Mutation	SNP	T	T	C		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	C	T	T	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	52808870	52808870	ITIH3	3	T	T	C	50
LRRC16A	55604	genome.wustl.edu	36	6	25714415	25714415	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	C	C	C	T	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	25714415	25714415	LRRC16A	6	C	C	T	30
DBH	1621	genome.wustl.edu	36	9	135497350	135497350	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	135497350	135497350	DBH	9	G	G	A	40
NOTCH3	4854	genome.wustl.edu	36	19	15159004	15159004	+	Silent	SNP	G	G	A		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	G	G	G	A	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	15159004	15159004	NOTCH3	19	G	G	A	40
APLP1	333	genome.wustl.edu	36	19	41061889	41061889	+	Missense_Mutation	SNP	T	T	A		Unknown	TCGA-04-1346-01	TCGA-04-1346-11	T	T	T	A	T	T	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41061889	41061889	APLP1	19	T	T	A	54
