Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SPEN	23013	broad.mit.edu	36	1	16133684	16133684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16133684	16133684	SPEN	1	G	G	C	35
USP48	84196	broad.mit.edu	36	1	21920755	21920755	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21920755	21920755	USP48	1	T	T	A	61
OPRD1	4985	broad.mit.edu	36	1	29062295	29062295	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29062295	29062295	OPRD1	1	C	C	G	28
CSMD2	114784	broad.mit.edu	36	1	34270780	34270780	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	34270780	34270780	CSMD2	1	A	A	C	14
MFSD2A	84879	broad.mit.edu	36	1	40207006	40207006	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	40207006	40207006	MFSD2A	1	T	T	G	59
GSTM5	2949	broad.mit.edu	36	1	110059274	110059274	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	110059274	110059274	GSTM5	1	G	G	A	33
SELP	6403	broad.mit.edu	36	1	167829531	167829531	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	167829531	167829531	SELP	1	A	A	G	15
ZBTB37	84614	broad.mit.edu	36	1	172106240	172106240	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	172106240	172106240	ZBTB37	1	C	C	A	32
CACNA1E	777	broad.mit.edu	36	1	179969302	179969302	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	179969302	179969302	CACNA1E	1	G	G	A	40
EDEM3	80267	broad.mit.edu	36	1	182930071	182930071	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	182930071	182930071	EDEM3	1	C	C	T	28
HMCN1	83872	broad.mit.edu	36	1	184223241	184223241	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	184223241	184223241	HMCN1	1	C	C	T	21
CRB1	23418	broad.mit.edu	36	1	195583110	195583110	+	Missense_Mutation	SNP	C	C	T	rs62636263	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	195583110	195583110	CRB1	1	C	C	T	19
RRP15	51018	broad.mit.edu	36	1	216545005	216545005	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	216545005	216545005	RRP15	1	C	C	A	28
HLX	3142	broad.mit.edu	36	1	219122164	219122164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	219122164	219122164	HLX	1	C	C	G	25
OR2T2	401992	broad.mit.edu	36	1	246683636	246683636	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	246683636	246683636	OR2T2	1	A	A	C	14
CALML5	51806	broad.mit.edu	36	10	5531328	5531328	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5531328	5531328	CALML5	10	T	T	C	60
PRKCQ	5588	broad.mit.edu	36	10	6510308	6510308	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6510308	6510308	PRKCQ	10	T	T	C	52
OGDHL	55753	broad.mit.edu	36	10	50623880	50623880	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50623880	50623880	OGDHL	10	G	G	A	48
JMJD1C	221037	broad.mit.edu	36	10	64645087	64645087	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	64645087	64645087	JMJD1C	10	G	G	A	46
TNKS1BP1	85456	broad.mit.edu	36	11	56833997	56833997	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56833997	56833997	TNKS1BP1	11	C	C	A	30
NXF1	10482	broad.mit.edu	36	11	62327610	62327610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62327610	62327610	NXF1	11	T	T	C	57
LRP5	4041	broad.mit.edu	36	11	67934074	67934074	+	Silent	SNP	C	C	T	rs35298380	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	67934074	67934074	LRP5	11	C	C	T	17
MGST1	4257	broad.mit.edu	36	12	16408059	16408059	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16408059	16408059	MGST1	12	G	G	T	45
ST8SIA1	6489	broad.mit.edu	36	12	22331372	22331372	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	22331372	22331372	ST8SIA1	12	G	G	A	45
C12orf35	55196	broad.mit.edu	36	12	32026322	32026322	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32026322	32026322	C12orf35	12	C	C	G	25
RND1	27289	broad.mit.edu	36	12	47541050	47541050	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47541050	47541050	RND1	12	C	C	A	28
GALNT6	11226	broad.mit.edu	36	12	50039348	50039348	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	50039348	50039348	GALNT6	12	G	G	C	35
ESPL1	9700	broad.mit.edu	36	12	51970987	51970987	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51970987	51970987	ESPL1	12	C	C	G	22
FGD6	55785	broad.mit.edu	36	12	94128424	94128424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	94128424	94128424	FGD6	12	C	C	A	25
C12orf51	283450	broad.mit.edu	36	12	111228320	111228320	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	111228320	111228320	C12orf51	12	C	C	T	18
ZC3H13	23091	broad.mit.edu	36	13	45461023	45461023	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	45461023	45461023	ZC3H13	13	C	C	G	28
ALDH6A1	4329	broad.mit.edu	36	14	73597102	73597102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73597102	73597102	ALDH6A1	14	C	C	T	19
HERC2	8924	broad.mit.edu	36	15	26148035	26148035	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26148035	26148035	HERC2	15	G	G	A	37
SPTBN5	51332	broad.mit.edu	36	15	39932820	39932820	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	39932820	39932820	SPTBN5	15	G	G	T	42
FES	2242	broad.mit.edu	36	15	89237893	89237894	+	Missense_Mutation	DNP	TG	TG	CC	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	89237893	89237894	FES	15	TG	TG	CC	55
TMEM204	79652	broad.mit.edu	36	16	1524303	1524303	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	1524303	1524303	TMEM204	16	C	C	T	27
CHD9	80205	broad.mit.edu	36	16	51748190	51748190	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	51748190	51748190	CHD9	16	C	C	T	25
SLC38A7	55238	broad.mit.edu	36	16	57268820	57268820	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	57268820	57268820	SLC38A7	16	G	G	A	38
LRRC36	55282	broad.mit.edu	36	16	65958639	65958639	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65958639	65958639	LRRC36	16	C	C	T	18
EDC4	23644	broad.mit.edu	36	16	66472526	66472526	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	66472526	66472526	EDC4	16	C	C	T	23
ZZEF1	23140	broad.mit.edu	36	17	3900829	3900829	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3900829	3900829	ZZEF1	17	C	C	G	30
DNAH9	1770	broad.mit.edu	36	17	11463638	11463638	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	11463638	11463638	DNAH9	17	G	G	A	33
MYO19	80179	broad.mit.edu	36	17	31933900	31933901	+	Splice_Site_SNP	DNP	CA	CA	GT	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	DNP	31933900	31933901	MYO19	17	CA	CA	GT	29
MYO19	80179	broad.mit.edu	36	17	31933903	31933903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31933903	31933903	MYO19	17	C	C	A	23
MYL4	4635	broad.mit.edu	36	17	42652308	42652308	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42652308	42652308	MYL4	17	C	C	A	20
SRSF1	6426	broad.mit.edu	36	17	53438293	53438293	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53438293	53438293	SRSF1	17	G	G	T	48
CBX4	8535	broad.mit.edu	36	17	75423079	75423080	+	Missense_Mutation	DNP	CT	CT	GA	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	75423079	75423080	CBX4	17	CT	CT	GA	32
MC4R	4160	broad.mit.edu	36	18	56190554	56190554	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56190554	56190554	MC4R	18	G	G	T	36
SLC1A6	6511	broad.mit.edu	36	19	14940253	14940253	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14940253	14940253	SLC1A6	19	A	A	C	6
POLR2I	5438	broad.mit.edu	36	19	41297578	41297578	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	41297578	41297578	POLR2I	19	G	G	C	40
ZNF549	256051	broad.mit.edu	36	19	62738325	62738325	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62738325	62738325	ZNF549	19	G	G	T	42
TTC15	51112	broad.mit.edu	36	2	3404746	3404746	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3404746	3404746	TTC15	2	A	A	C	6
NCOA1	8648	broad.mit.edu	36	2	24759360	24759360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24759360	24759360	NCOA1	2	G	G	T	35
ZNF513	130557	broad.mit.edu	36	2	27454507	27454507	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27454507	27454507	ZNF513	2	T	T	C	54
APLF	200558	broad.mit.edu	36	2	68618673	68618673	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	68618673	68618673	APLF	2	T	T	G	55
INPP4A	3631	broad.mit.edu	36	2	98537169	98537169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	98537169	98537169	INPP4A	2	C	C	G	19
GCC2	9648	broad.mit.edu	36	2	108482477	108482477	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	108482477	108482477	GCC2	2	C	C	G	29
GCA	25801	broad.mit.edu	36	2	162912415	162912415	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	162912415	162912415	GCA	2	G	G	T	47
PTPRN	5798	broad.mit.edu	36	2	219874666	219874666	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	219874666	219874666	PTPRN	2	C	C	A	21
C20orf117	140710	broad.mit.edu	36	20	34901120	34901120	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34901120	34901120	C20orf117	20	G	G	C	38
CSE1L	1434	broad.mit.edu	36	20	47139278	47139278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47139278	47139278	CSE1L	20	G	G	T	48
SALL4	57167	broad.mit.edu	36	20	49840118	49840118	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49840118	49840118	SALL4	20	C	C	T	30
LIPI	149998	broad.mit.edu	36	21	14460592	14460592	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14460592	14460592	LIPI	21	C	C	T	30
TRIOBP	11078	broad.mit.edu	36	22	36481114	36481114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36481114	36481114	TRIOBP	22	G	G	C	44
GOLGA4	2803	broad.mit.edu	36	3	37340324	37340324	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37340324	37340324	GOLGA4	3	A	A	C	3
DNAH1	25981	broad.mit.edu	36	3	52361049	52361049	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52361049	52361049	DNAH1	3	C	C	A	24
STAB1	23166	broad.mit.edu	36	3	52513844	52513844	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52513844	52513844	STAB1	3	A	A	G	6
C3orf26	84319	broad.mit.edu	36	3	101363911	101363911	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101363911	101363911	C3orf26	3	G	G	C	35
RARRES1	5918	broad.mit.edu	36	3	159911391	159911391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	159911391	159911391	RARRES1	3	C	C	T	19
SI	6476	broad.mit.edu	36	3	166218272	166218272	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	166218272	166218272	SI	3	G	G	T	41
SAMD7	344658	broad.mit.edu	36	3	171121779	171121779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	171121779	171121779	SAMD7	3	A	A	G	2
TNIK	23043	broad.mit.edu	36	3	172284784	172284784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	172284784	172284784	TNIK	3	C	C	T	24
TMEM156	80008	broad.mit.edu	36	4	38671859	38671859	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	38671859	38671859	TMEM156	4	C	C	A	21
NKX6-1	4825	broad.mit.edu	36	4	85633579	85633579	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	85633579	85633579	NKX6-1	4	C	C	A	30
PALLD	23022	broad.mit.edu	36	4	170056248	170056248	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	170056248	170056248	PALLD	4	A	A	G	10
IRX4	50805	broad.mit.edu	36	5	1932925	1932925	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1932925	1932925	IRX4	5	G	G	C	46
NNT	23530	broad.mit.edu	36	5	43711491	43711491	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43711491	43711491	NNT	5	A	A	T	10
NDST1	3340	broad.mit.edu	36	5	149887837	149887837	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	149887837	149887837	NDST1	5	C	C	G	21
ZNF192	7745	broad.mit.edu	36	6	28224394	28224394	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28224394	28224394	ZNF192	6	A	A	G	8
FGD2	221472	broad.mit.edu	36	6	37096296	37096296	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37096296	37096296	FGD2	6	T	T	G	59
DST	667	broad.mit.edu	36	6	56483971	56483971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56483971	56483971	DST	6	T	T	C	51
MDN1	23195	broad.mit.edu	36	6	90437477	90437477	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90437477	90437477	MDN1	6	A	A	T	10
AIM1	202	broad.mit.edu	36	6	107099204	107099204	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107099204	107099204	AIM1	6	G	G	C	35
VNN1	8876	broad.mit.edu	36	6	133046139	133046139	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133046139	133046139	VNN1	6	G	G	C	40
RSPH3	83861	broad.mit.edu	36	6	159340871	159340871	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	159340871	159340871	RSPH3	6	G	G	C	39
EIF3B	8662	broad.mit.edu	36	7	2375837	2375837	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	2375837	2375837	EIF3B	7	C	C	T	25
WBSCR17	64409	broad.mit.edu	36	7	70491247	70491247	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	70491247	70491247	WBSCR17	7	C	C	T	23
HYAL4	23553	broad.mit.edu	36	7	123295798	123295798	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	123295798	123295798	HYAL4	7	C	C	G	20
CCDC136	64753	broad.mit.edu	36	7	128234679	128234679	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	128234679	128234679	CCDC136	7	G	G	A	33
LRGUK	136332	broad.mit.edu	36	7	133509892	133509892	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	133509892	133509892	LRGUK	7	C	C	T	30
MTMR9	66036	broad.mit.edu	36	8	11211615	11211615	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	11211615	11211615	MTMR9	8	C	C	G	28
CA3	761	broad.mit.edu	36	8	86539302	86539302	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	86539302	86539302	CA3	8	T	T	G	55
OSR2	116039	broad.mit.edu	36	8	100032059	100032059	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	100032059	100032059	OSR2	8	G	G	T	33
TG	7038	broad.mit.edu	36	8	134103548	134103548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	134103548	134103548	TG	8	G	G	A	37
C8orf73	642475	broad.mit.edu	36	8	144723877	144723877	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	144723877	144723877	C8orf73	8	G	G	C	48
CYHR1	50626	broad.mit.edu	36	8	145660554	145660554	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	145660554	145660554	CYHR1	8	C	C	T	26
SPTLC1	10558	broad.mit.edu	36	9	93861412	93861412	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	93861412	93861412	SPTLC1	9	C	C	T	32
INVS	27130	broad.mit.edu	36	9	102054415	102054415	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102054415	102054415	INVS	9	G	G	T	48
LRRC8A	56262	broad.mit.edu	36	9	130710429	130710429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	130710429	130710429	LRRC8A	9	C	C	G	27
ABL1	25	broad.mit.edu	36	9	132720016	132720016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	132720016	132720016	ABL1	9	G	G	C	34
SEC16A	9919	broad.mit.edu	36	9	138462402	138462402	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	138462402	138462402	SEC16A	9	T	T	G	62
RBBP7	5931	broad.mit.edu	36	X	16780669	16780669	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	16780669	16780669	RBBP7	23	C	C	A	19
RAB40AL	282808	broad.mit.edu	36	X	102079466	102079466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	102079466	102079466	RAB40AL	23	G	G	A	35
LOC100132247	100132247	broad.mit.edu	36	16	22453485	22453496	+	In_Frame_Del	DEL	TCCACCCTCAGC	-	TCCACCCTCAGC	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	22453485	22453496	LOC100132247	16	TCCACCCTCAGC	-	TCCACCCTCAGC	62
TP53	7157	broad.mit.edu	36	17	7518907	7518908	+	Frame_Shift_Del	DEL	GC	-	GC	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	7518907	7518908	TP53	17	GC	-	GC	42
ZNF415	55786	broad.mit.edu	36	19	58303482	58303494	+	Frame_Shift_Del	DEL	TGATGTCTGAAGA	-	TGATGTCTGAAGA	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	58303482	58303494	ZNF415	19	TGATGTCTGAAGA	-	TGATGTCTGAAGA	63
LIAS	11019	broad.mit.edu	36	4	39137146	39137151	+	In_Frame_Del	DEL	GCGGGG	-	GCGGGG	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	39137146	39137151	LIAS	4	GCGGGG	-	GCGGGG	46
DRP2	1821	broad.mit.edu	36	X	100377632	100377674	+	Splice_Site_Del	DEL	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	-	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	novel	Unknown	TCGA-09-2051-01	TCGA-09-2051-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	100377632	100377674	DRP2	23	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	-	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	48
