Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADD1	118	genome.wustl.edu	36	4	2886435	2886435	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	2886435	2886435	ADD1	4	C	T	T	21
CLPP	8192	genome.wustl.edu	36	19	6319570	6319570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	6319570	6319570	CLPP	19	G	G	A	38
TP53	7157	genome.wustl.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7517839	7517839	TP53	17	C	T	T	17
ADCY2	108	genome.wustl.edu	36	5	7765987	7765987	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7765987	7765987	ADCY2	5	C	C	G	25
TPTE	7179	genome.wustl.edu	36	21	9955923	9955923	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	9955923	9955923	TPTE	21	C	C	T	17
DNAH5	1767	genome.wustl.edu	36	5	13903804	13903804	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	13903804	13903804	DNAH5	5	G	G	T	48
ZMYM2	7750	genome.wustl.edu	36	13	19539011	19539011	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	19539011	19539011	ZMYM2	13	A	A	G	16
CDH18	1016	genome.wustl.edu	36	5	19607578	19607578	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19607578	19607578	CDH18	5	C	C	A	17
CHD8	57680	genome.wustl.edu	36	14	20940373	20940373	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20940373	20940373	CHD8	14	G	G	C	34
DNAH11	8701	genome.wustl.edu	36	7	21872754	21872754	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21872754	21872754	DNAH11	7	A	A	C	9
DSG1	1828	genome.wustl.edu	36	18	27167633	27167633	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27167633	27167633	DSG1	18	C	C	A	17
LOC100133224		genome.wustl.edu	36	22	29882241	29882241	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29882241	29882241	LOC100133224	22	C	C	T	19
HLA-G	3135	genome.wustl.edu	36	6	29905345	29905345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29905345	29905345	HLA-G	6	C	C	T	18
CDH6	1004	genome.wustl.edu	36	5	31359020	31359020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	31359020	31359020	CDH6	5	G	G	A	45
CTNNB1	1499	genome.wustl.edu	36	3	41241891	41241891	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	41241891	41241891	CTNNB1	3	C	T	T	19
SCUBE1	80274	genome.wustl.edu	36	22	41944370	41944370	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	41944370	41944370	SCUBE1	22	G	A	A	48
GRAMD4	23151	genome.wustl.edu	36	22	45401479	45401479	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	45401479	45401479	GRAMD4	22	T	A	A	57
LRCH1	23143	genome.wustl.edu	36	13	46195380	46195380	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46195380	46195380	LRCH1	13	T	T	A	64
EHBP1	23301	genome.wustl.edu	36	2	62955168	62955168	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	62955168	62955168	EHBP1	2	T	T	C	53
PELI3	246330	genome.wustl.edu	36	11	65997320	65997320	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	65997320	65997320	PELI3	11	C	C	T	31
ZNF407	55628	genome.wustl.edu	36	18	70718207	70718207	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70718207	70718207	ZNF407	18	A	A	T	2
RGNEF	64283	genome.wustl.edu	36	5	73105497	73105497	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	73105497	73105497	RGNEF	5	C	T	T	22
RNF213	57674	genome.wustl.edu	36	17	75964828	75964828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	75964828	75964828	RNF213	17	G	G	A	45
ROBO1	6091	genome.wustl.edu	36	3	78767801	78767801	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	78767801	78767801	ROBO1	3	C	C	T	19
IL16	3603	genome.wustl.edu	36	15	79372265	79372265	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	79372265	79372265	IL16	15	G	A	A	38
VCAN	1462	genome.wustl.edu	36	5	82851613	82851613	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	82851613	82851613	VCAN	5	G	G	A	45
FOXN3	1112	genome.wustl.edu	36	14	88698683	88698683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	88698683	88698683	FOXN3	14	G	G	A	48
TGIF2LX	90316	genome.wustl.edu	36	X	89063758	89063758	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	89063758	89063758	TGIF2LX	23	C	T	T	19
GBP2	2634	genome.wustl.edu	36	1	89358540	89358540	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	89358540	89358540	GBP2	1	G	G	A	41
DYNC1I1	1780	genome.wustl.edu	36	7	95280548	95280548	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	95280548	95280548	DYNC1I1	7	G	G	T	47
SRRT	51593	genome.wustl.edu	36	7	100323649	100323649	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100323649	100323649	SRRT	7	C	C	A	21
CCDC63	160762	genome.wustl.edu	36	12	109780780	109780780	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	109780780	109780780	CCDC63	12	A	A	C	12
C7orf60	154743	genome.wustl.edu	36	7	112322977	112322977	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	112322977	112322977	C7orf60	7	T	T	A	50
GPR85	54329	genome.wustl.edu	36	7	112511041	112511041	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	112511041	112511041	GPR85	7	A	A	G	7
SLC12A2	6558	genome.wustl.edu	36	5	127514866	127514866	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	127514866	127514866	SLC12A2	5	G	G	T	41
uc003vym.2	0	genome.wustl.edu	36	7	141819621	141819621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	141819621	141819621	uc003vym.2	7	C	C	A	30
CRNN	49860	genome.wustl.edu	36	1	150650016	150650016	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150650016	150650016	CRNN	1	C	C	T	29
IFI16	3428	genome.wustl.edu	36	1	157290096	157290096	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	157290096	157290096	IFI16	1	G	G	A	41
MPZL1	9019	genome.wustl.edu	36	1	166001554	166001554	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	166001554	166001554	MPZL1	1	G	G	A	39
RNASEL	6041	genome.wustl.edu	36	1	180811317	180811317	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	180811317	180811317	RNASEL	1	C	C	T	32
UFM1	51569	genome.wustl.edu	36	13	37826430	37826441	+	Frame_Shift_Del	DEL	AGAAGTAAGTAC	AGAAGTAAGTAC	-	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	AGAAGTAAGTAC	AGAAGTAAGTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	37826430	37826441	UFM1	13	AGAAGTAAGTAC	AGAAGTAAGTAC	-	3
MALAT1	378938	genome.wustl.edu	36	11	65028263	65028264	+	Frame_Shift_Ins	INS	-	-	GA	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	65028263	65028264	MALAT1	11	-	-	GA	51
FAM58B	339521	genome.wustl.edu	36	1	198449327	198449350	+	In_Frame_Del	DEL	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	GAGGACGCCGGAGAGGAGGCCGGA	-	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	198449327	198449350	FAM58B	1	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	41
SVIL	6840	genome.wustl.edu	36	10	29799398	29799398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29799398	29799398	SVIL	10	C	C	T	19
ERN2	10595	genome.wustl.edu	36	16	23623881	23623881	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	23623881	23623881	ERN2	16	G	A	A	38
C19orf62	29086	genome.wustl.edu	36	19	17243464	17243464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	17243464	17243464	C19orf62	19	G	G	T	43
RASSF1	11186	genome.wustl.edu	36	3	50343846	50343846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	50343846	50343846	RASSF1	3	G	G	A	38
ANKRD17	26057	genome.wustl.edu	36	4	74175270	74175270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01	TCGA-13-1491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	74175270	74175270	ANKRD17	4	C	C	G	32
