Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CAMSAP1L1	23271	broad.mit.edu	37	1	200825160	200825160	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr1:200825160T>G	uc001gvl.2	+	16	4222	c.3952T>G	c.(3952-3954)TTA>GTA	p.L1318V	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.L1307V|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.L1291V	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1318						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGAAGGCTTCTTATCTCCAAG	0.388000													6	288	---	---	---	---	0	0	0.029380	0	0
ZP4	57829	broad.mit.edu	37	1	238045749	238045749	+	Silent	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr1:238045749C>T	uc001hym.2	-	12	1596	c.1596G>A	c.(1594-1596)AAG>AAA	p.K532K	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	532	Cytoplasmic (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			CTGGGCAACTCTTCTGTTTCT	0.443000													5	209	---	---	---	---	0	0	0.014758	0	0
FRMPD2	143162	broad.mit.edu	37	10	49409405	49409405	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr10:49409405C>T	uc001jgi.2	-	15	1927	c.1820G>A	c.(1819-1821)AGC>AAC	p.S607N	FRMPD2_uc001jgh.2_Missense_Mutation_p.S575N|FRMPD2_uc001jgj.2_Missense_Mutation_p.S585N	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	607	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGTGACACTGCTTGTGATGGT	0.453000													52	170	---	---	---	---	0	0	0.139131	0	0
C10orf76	79591	broad.mit.edu	37	10	103735059	103735059	+	Splice_Site	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr10:103735059T>C	uc009xwy.1	-	20	1509	c.1407_splice	c.e20-1	p.I469_splice	C10orf76_uc009xwx.1_Splice_Site	NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591							integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		ATGCAGCGTCTGTAACAGGGA	0.493000													19	49	---	---	---	---	0	0	0.055883	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122273473	122273473	+	Silent	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr10:122273473C>T	uc001lev.1	+	3	568	c.216C>T	c.(214-216)ATC>ATT	p.I72I	PPAPDC1A_uc010qtd.1_Silent_p.I72I|PPAPDC1A_uc009xzl.1_Silent_p.I72I|PPAPDC1A_uc001lew.1_Intron|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_5'UTR	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	72					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		TGAAAATTATCCGGCGAACAG	0.413000													4	184	---	---	---	---	0	0	0.014758	0	0
OR5B2	390190	broad.mit.edu	37	11	58190019	58190019	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr11:58190019C>T	uc010rkg.1	-	1	716	c.716G>A	c.(715-717)TGT>TAT	p.C239Y		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GTGAGAGGCACAGGTGGACAA	0.438000													27	57	---	---	---	---	0	0	0.099896	0	0
C11orf9	745	broad.mit.edu	37	11	61551039	61551039	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr11:61551039C>T	uc001nsc.1	+	23	3182	c.3086C>T	c.(3085-3087)ACC>ATC	p.T1029I	C11orf9_uc001nse.1_Missense_Mutation_p.T989I|C11orf9_uc010rll.1_Missense_Mutation_p.T415I	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	1029					central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						ATGTCCATCACCTCCCAGTAC	0.617000													5	308	---	---	---	---	0	0	0.014758	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800585	74800585	+	Silent	SNP	G	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr11:74800585G>T	uc010rro.1	-	1	174	c.174C>A	c.(172-174)CCC>CCA	p.P58P		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	58	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTGGAGGCTGGGCTCTGCCA	0.502000													5	87	---	---	---	---	2.0095e-06	2.67933e-06	0.029380	1	0
SORL1	6653	broad.mit.edu	37	11	121424735	121424735	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr11:121424735G>A	uc001pxx.2	+	17	2436	c.2356G>A	c.(2356-2358)GGG>AGG	p.G786R		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	786	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCCTCTCACCGGGCTACGGGC	0.562000													4	234	---	---	---	---	0	0	0.014758	0	0
THYN1	29087	broad.mit.edu	37	11	134122752	134122752	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr11:134122752C>G	uc001qhf.2	-	2	127	c.25G>C	c.(25-27)GCT>CCT	p.A9P	THYN1_uc001qhg.2_Missense_Mutation_p.A9P|THYN1_uc001qhh.2_Missense_Mutation_p.A9P|THYN1_uc001qhi.2_Missense_Mutation_p.A9P|THYN1_uc001qhj.2_Missense_Mutation_p.A9P|THYN1_uc009zdb.2_Missense_Mutation_p.A9P|ACAD8_uc009zdc.2_5'Flank|ACAD8_uc010sco.1_5'Flank|ACAD8_uc010scp.1_5'Flank|ACAD8_uc010scq.1_5'Flank|ACAD8_uc001qhk.2_5'Flank|ACAD8_uc001qhl.2_5'Flank	NM_001037305	NP_001032382	Q9P016	THYN1_HUMAN	thymocyte nuclear protein 1 isoform 1	9	Nuclear localization signal (By similarity).					nucleus					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;1.68e-10)|all cancers(11;1.95e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00148)|Lung(977;0.207)		GAAGTCCCAGCCAGCCTCTTC	0.512000													3	148	---	---	---	---	0	0	0.115264	0	0
A2ML1	144568	broad.mit.edu	37	12	9013729	9013729	+	Splice_Site	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr12:9013729A>G	uc001quz.3	+	28	3438	c.3340_splice	c.e28-2	p.D1114_splice	A2ML1_uc001qva.1_Splice_Site_p.D694_splice|A2ML1_uc010sgm.1_Splice_Site_p.D614_splice	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor							extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TTCACTTTTTAGGACCCAATG	0.433000													3	193	---	---	---	---	0	0	0.009096	0	0
CCDC38	120935	broad.mit.edu	37	12	96310945	96310945	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr12:96310945A>C	uc001tek.1	-	4	500	c.266T>G	c.(265-267)TTT>TGT	p.F89C		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	89										skin(1)	1						ACCTGGCCCAAACTTTTCAAA	0.373000													6	94	---	---	---	---	0	0	0.029380	0	0
RBM19	9904	broad.mit.edu	37	12	114377796	114377796	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr12:114377796C>T	uc009zwi.2	-	15	2051	c.1907G>A	c.(1906-1908)CGC>CAC	p.R636H	RBM19_uc001tvn.3_Missense_Mutation_p.R636H|RBM19_uc001tvm.2_Missense_Mutation_p.R636H	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	636	RRM 4.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GAAGGCCTTGCGGGCCTCCAG	0.622000													5	154	---	---	---	---	0	0	0.014758	0	0
TEP1	7011	broad.mit.edu	37	14	20869182	20869182	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr14:20869182G>T	uc001vxe.2	-	9	1550	c.1510C>A	c.(1510-1512)CTA>ATA	p.L504I	TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.L396I	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	504	TROVE.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		TTCCCCCGTAGGCTCAGCTCC	0.547000													51	107	---	---	---	---	2.82306e-37	4.03295e-37	0.139131	1	0
MTHFD1	4522	broad.mit.edu	37	14	64882196	64882196	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr14:64882196G>C	uc001xhb.2	+	5	748	c.361G>C	c.(361-363)GAG>CAG	p.E121Q	MTHFD1_uc010aqe.2_Missense_Mutation_p.E157Q|MTHFD1_uc010aqf.2_Missense_Mutation_p.E177Q	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	121	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	TATTGCACCCGAGAAGGATGT	0.383000													3	280	---	---	---	---	0	0	0.115264	0	0
INO80	54617	broad.mit.edu	37	15	41364115	41364115	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr15:41364115T>C	uc001zni.2	-	12	1750	c.1537A>G	c.(1537-1539)ATT>GTT	p.I513V	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	513	Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CCATTAAAAATTGTGGGCTGT	0.448000													3	218	---	---	---	---	0	0	0.115264	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	83014106	83014106	+	Silent	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr15:83014106T>C	uc010uny.1	-	6	539	c.441A>G	c.(439-441)GTA>GTG	p.V147V	GOLGA6L10_uc010unt.1_RNA|uc002bhl.2_Intron|uc002bhm.2_Intron|GOLGA6L10_uc002bia.1_5'Flank	NM_198181	NP_937824	A6NI86	GG6LA_HUMAN	golgi autoantigen, golgin subfamily a, 6D-like	159	Potential.										0						GTAGCTGCTCTACCTTAGATG	0.498000													2	6	---	---	---	---	0	0	0.115264	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	83014132	83014132	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr15:83014132C>G	uc010uny.1	-	6	513	c.415G>C	c.(415-417)GAG>CAG	p.E139Q	GOLGA6L10_uc010unt.1_RNA|uc002bhl.2_Intron|uc002bhm.2_Intron|GOLGA6L10_uc002bia.1_5'Flank	NM_198181	NP_937824	A6NI86	GG6LA_HUMAN	golgi autoantigen, golgin subfamily a, 6D-like	151											0						GCTGGGGGCTCTGGGGCCAGG	0.522000													2	6	---	---	---	---	0	0	0.115264	0	0
AXIN1	8312	broad.mit.edu	37	16	364573	364573	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr16:364573G>A	uc002cgp.1	-	3	1166	c.989C>T	c.(988-990)GCA>GTA	p.A330V	AXIN1_uc002cgq.1_Missense_Mutation_p.A330V	NM_003502	NP_003493	O15169	AXIN1_HUMAN	axin 1 isoform a	330	Interaction with TP53 (By similarity).				activation of JUN kinase activity|activation of protein kinase activity|apoptosis|axial mesoderm formation|canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation|cellular protein complex assembly|cellular response to organic cyclic compound|cytoplasmic microtubule organization|determination of left/right symmetry|dorsal/ventral axis specification|embryonic eye morphogenesis|embryonic skeletal joint morphogenesis|forebrain anterior/posterior pattern formation|muscle cell development|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|olfactory placode formation|optic placode formation|positive regulation of JNK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity|regulation of catenin import into nucleus|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuron fate commitment|Wnt receptor signaling pathway involved in somitogenesis	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|cell cortex|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|cytosol|lateral plasma membrane|nucleus|perinuclear region of cytoplasm|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|I-SMAD binding|p53 binding|protein complex scaffold|protein homodimerization activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			breast(1)|liver(1)	2		all_cancers(16;2.75e-07)|all_epithelial(16;1.6e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00774)|all_lung(18;0.0187)				CAGGGTGTCTGCATCGCTGGA	0.627000													14	56	---	---	---	---	0	0	0.132662	0	0
CDH8	1006	broad.mit.edu	37	16	61687826	61687826	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr16:61687826G>C	uc002eog.1	-	12	2338	c.2086C>G	c.(2086-2088)CCC>GCC	p.P696A		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	696	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TCCTTACGGGGTAAAAATCCA	0.408000													39	188	---	---	---	---	0	0	0.080422	0	0
C18orf62	284274	broad.mit.edu	37	18	73130763	73130763	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr18:73130763T>C	uc002lma.1	-	2	309	c.238A>G	c.(238-240)AGG>GGG	p.R80G	C18orf62_uc010dqw.1_Intron|C18orf62_uc002lmb.1_RNA	NM_001037331	NP_001032408	Q3B7S5	CR062_HUMAN	hypothetical protein LOC284274	80						integral to membrane					0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		OV - Ovarian serous cystadenocarcinoma(15;6.21e-06)		ctgttggcccttttccagtct	0.109000													3	199	---	---	---	---	0	0	0.009096	0	0
MUC16	94025	broad.mit.edu	37	19	9064376	9064376	+	Silent	SNP	C	T	T	rs150330701	by1000genomes	TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr19:9064376C>T	uc002mkp.2	-	3	23274	c.23070G>A	c.(23068-23070)CCG>CCA	p.P7690P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7692	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAAAGACAGCGGGGAGGATG	0.562000													7	55	---	---	---	---	0	0	0.047766	0	0
LIPE	3991	broad.mit.edu	37	19	42912459	42912459	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr19:42912459G>A	uc002otr.2	-	3	1712	c.1435C>T	c.(1435-1437)CGG>TGG	p.R479W	uc010eif.1_Intron|LIPE_uc002ots.1_Missense_Mutation_p.R224W	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	479					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				AGGAATGGCCGGATGGCAGGC	0.627000													4	224	---	---	---	---	0	0	0.009096	0	0
VN1R1	57191	broad.mit.edu	37	19	57967438	57967438	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr19:57967438G>C	uc002qos.1	-	1	417	c.417C>G	c.(415-417)ATC>ATG	p.I139M	ZNF547_uc002qpm.3_Intron	NM_020633	NP_065684	Q9GZP7	VN1R1_HUMAN	vomeronasal 1 receptor 1	139	Helical; Name=3; (Potential).		I -> T (in allele VN1R1*2).		response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)|Breast(46;0.222)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)|Lung(386;0.171)		TGAGAAGGCAGATGGTGCTGA	0.428000													24	131	---	---	---	---	0	0	0.076483	0	0
VN1R1	57191	broad.mit.edu	37	19	57967675	57967675	+	Silent	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr19:57967675G>A	uc002qos.1	-	1	180	c.180C>T	c.(178-180)ATC>ATT	p.I60I	ZNF547_uc002qpm.3_Intron	NM_020633	NP_065684	Q9GZP7	VN1R1_HUMAN	vomeronasal 1 receptor 1	60	Helical; Name=1; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)|Breast(46;0.222)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)|Lung(386;0.171)		AATTTCCCAGGATCCCAACTC	0.413000													14	88	---	---	---	---	0	0	0.119110	0	0
VN1R1	57191	broad.mit.edu	37	19	57967712	57967712	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr19:57967712G>A	uc002qos.1	-	1	143	c.143C>T	c.(142-144)TCA>TTA	p.S48L	ZNF547_uc002qpm.3_Intron	NM_020633	NP_065684	Q9GZP7	VN1R1_HUMAN	vomeronasal 1 receptor 1	48	Extracellular (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)|Breast(46;0.222)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)|Lung(386;0.171)		GCTAATCCCTGATTTTACTTT	0.358000													17	91	---	---	---	---	0	0	0.146539	0	0
MRPS5	64969	broad.mit.edu	37	2	95773945	95773945	+	Silent	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr2:95773945G>A	uc002sub.2	-	5	830	c.612C>T	c.(610-612)GGC>GGT	p.G204G	MRPS5_uc002suc.2_RNA|MRPS5_uc010yud.1_Silent_p.G204G	NM_031902	NP_114108	P82675	RT05_HUMAN	mitochondrial ribosomal protein S5	204					translation	mitochondrion|ribosome	protein binding|RNA binding|structural constituent of ribosome			ovary(2)|central_nervous_system(1)	3						GGTCAGGGGGGCCAAGACTGA	0.488000													4	130	---	---	---	---	0	0	0.021553	0	0
SCN1A	6323	broad.mit.edu	37	2	166894497	166894497	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr2:166894497A>G	uc010zcz.1	-	15	2720	c.2702T>C	c.(2701-2703)TTT>TCT	p.F901S	SCN1A_uc002udo.3_Missense_Mutation_p.F781S|SCN1A_uc010fpk.2_Missense_Mutation_p.F753S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	912	II.|Helical; Name=S5 of repeat II; (By similarity).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCTTTTACCAAAGAGCTGCAT	0.478000													35	117	---	---	---	---	0	0	0.069456	0	0
SSFA2	6744	broad.mit.edu	37	2	182783539	182783539	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr2:182783539A>G	uc002uoi.2	+	13	3245	c.2923A>G	c.(2923-2925)ATG>GTG	p.M975V	SSFA2_uc002uoh.2_Missense_Mutation_p.M975V|SSFA2_uc002uoj.2_Missense_Mutation_p.M975V|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.M822V|SSFA2_uc002uol.2_Missense_Mutation_p.M822V|SSFA2_uc002uom.2_Missense_Mutation_p.M443V	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	975	Potential.					cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TAGAACACAAATGATGGATTT	0.373000													3	99	---	---	---	---	0	0	0.115264	0	0
UMODL1	89766	broad.mit.edu	37	21	43547305	43547305	+	Silent	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr21:43547305G>A	uc002zaf.1	+	19	3483	c.3483G>A	c.(3481-3483)CCG>CCA	p.P1161P	UMODL1_uc002zad.1_Silent_p.P1089P|UMODL1_uc002zae.1_Silent_p.P1217P|UMODL1_uc002zag.1_Silent_p.P1289P|UMODL1_uc002zal.1_Silent_p.P111P|UMODL1_uc010gpa.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	1161	Extracellular (Potential).|ZP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGGCAACCCCGTCTAGCAACG	0.562000													5	126	---	---	---	---	0	0	0.014758	0	0
NEK10	152110	broad.mit.edu	37	3	27332763	27332763	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr3:27332763C>G	uc003cdt.1	-	19	1869	c.1595G>C	c.(1594-1596)TGT>TCT	p.C532S	NEK10_uc003cds.1_5'UTR	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	532	ATP (By similarity).|Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CTTGTAAACACAGCCAAAAGC	0.383000													8	45	---	---	---	---	0	0	0.047766	0	0
HTR3C	170572	broad.mit.edu	37	3	183777748	183777748	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr3:183777748A>T	uc003fmk.2	+	8	1092	c.1058A>T	c.(1057-1059)CAC>CTC	p.H353L		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	353	Cytoplasmic (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CTGCTGCTCCACTGCACCAGC	0.642000													23	50	---	---	---	---	0	0	0.091800	0	0
EIF4G1	1981	broad.mit.edu	37	3	184040719	184040719	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr3:184040719A>G	uc003fnp.2	+	13	2104	c.1906A>G	c.(1906-1908)ATC>GTC	p.I636V	EIF4G1_uc003fno.1_Missense_Mutation_p.I577V|EIF4G1_uc010hxw.1_Missense_Mutation_p.I472V|EIF4G1_uc003fnt.2_Missense_Mutation_p.I347V|EIF4G1_uc003fnq.2_Missense_Mutation_p.I549V|EIF4G1_uc003fnr.2_Missense_Mutation_p.I472V|EIF4G1_uc010hxx.2_Missense_Mutation_p.I643V|EIF4G1_uc003fns.2_Missense_Mutation_p.I596V|EIF4G1_uc010hxy.2_Missense_Mutation_p.I643V|EIF4G1_uc003fnv.3_Missense_Mutation_p.I636V|EIF4G1_uc003fnu.3_Missense_Mutation_p.I636V|EIF4G1_uc003fnw.2_Missense_Mutation_p.I643V|EIF4G1_uc003fnx.2_Missense_Mutation_p.I440V|EIF4G1_uc003fny.3_Missense_Mutation_p.I440V|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	636	MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ATTGCCACATATCAGTGACGT	0.507000													6	285	---	---	---	---	0	0	0.021553	0	0
FRYL	285527	broad.mit.edu	37	4	48591854	48591854	+	Silent	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr4:48591854A>G	uc003gyh.1	-	18	2153	c.1548T>C	c.(1546-1548)GAT>GAC	p.D516D	FRYL_uc003gyk.2_Silent_p.D516D	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	516					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TGAGGATGCTATCTAATGCTT	0.353000													4	249	---	---	---	---	0	0	0.021553	0	0
DNAH5	1767	broad.mit.edu	37	5	13751210	13751210	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr5:13751210T>C	uc003jfd.2	-	65	11230	c.11188A>G	c.(11188-11190)AGG>GGG	p.R3730G	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3730	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGAATGACCCTCCCCAGTAAC	0.443000									Kartagener_syndrome				32	70	---	---	---	---	0	0	0.069456	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178552086	178552086	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr5:178552086T>G	uc003mjw.2	-	19	2846	c.2846A>C	c.(2845-2847)AAC>ACC	p.N949T		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	949	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GCGGGTGGTGTTGTCGTGTAG	0.697000													5	277	---	---	---	---	0	0	0.014758	0	0
ZFAND3	60685	broad.mit.edu	37	6	38029485	38029485	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr6:38029485A>G	uc003onx.2	+	3	644	c.229A>G	c.(229-231)ACT>GCT	p.T77A		NM_021943	NP_068762	Q9H8U3	ZFAN3_HUMAN	zinc finger, AN1-type domain 3	77							DNA binding|zinc ion binding			ovary(1)	1						AACCACGCCAACTCTTAGTCC	0.493000													15	49	---	---	---	---	0	0	0.132662	0	0
PTPRK	5796	broad.mit.edu	37	6	128540102	128540102	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr6:128540102G>A	uc003qbk.2	-	6	1200	c.833C>T	c.(832-834)TCC>TTC	p.S278F	PTPRK_uc003qbj.2_Missense_Mutation_p.S278F|PTPRK_uc010kfc.2_Missense_Mutation_p.S278F|PTPRK_uc011ebu.1_Missense_Mutation_p.S278F|PTPRK_uc003qbl.1_Missense_Mutation_p.S148F|PTPRK_uc011ebv.1_Missense_Mutation_p.S278F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	278	Extracellular (Potential).|Ig-like C2-type.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GGACACACCGGAACCTCGTTC	0.398000													41	158	---	---	---	---	0	0	0.117977	0	0
C7orf10	79783	broad.mit.edu	37	7	40899976	40899976	+	Silent	SNP	G	A	A			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr7:40899976G>A	uc003thn.1	+	14	1260	c.1215G>A	c.(1213-1215)GGG>GGA	p.G405G	C7orf10_uc003thm.1_Silent_p.G401G|C7orf10_uc003tho.1_Silent_p.G357G|C7orf10_uc003thp.1_RNA	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	412							transferase activity			ovary(2)	2						CGCTGCTCGGGCAGCACACAA	0.572000													11	285	---	---	---	---	0	0	0.119110	0	0
HUS1	3364	broad.mit.edu	37	7	48016402	48016402	+	Silent	SNP	G	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr7:48016402G>T	uc003tod.1	-	4	520	c.390C>A	c.(388-390)ACC>ACA	p.T130T	HUS1_uc003toe.1_Silent_p.T130T|HUS1_uc011kce.1_RNA	NM_004507	NP_004498	O60921	HUS1_HUMAN	HUS1 checkpoint protein	130					DNA damage checkpoint|DNA replication	Golgi apparatus|nucleolus|nucleoplasm	protein binding			ovary(2)|lung(2)|kidney(1)	5		Breast(660;0.00139)				GGATGTCATGGGTCACAATGC	0.408000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					7	247	---	---	---	---	0.000157383	0.000206404	0.038147	1	0
CNGB3	54714	broad.mit.edu	37	8	87683262	87683262	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr8:87683262G>C	uc003ydx.2	-	4	449	c.403C>G	c.(403-405)CTG>GTG	p.L135V	CNGB3_uc010maj.2_5'UTR	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	135	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						CTTTTCACCAGGTTGTGTAGC	0.473000													12	499	---	---	---	---	0	0	0.080935	0	0
FLJ43950	347127	broad.mit.edu	37	9	84530744	84530744	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr9:84530744T>C	uc011lst.1	+	4	766	c.665T>C	c.(664-666)CTT>CCT	p.L222P		NR_026851				SubName: Full=cDNA FLJ43950 fis, clone TESTI4015293, moderately similar to FAM75-like protein;												0						CCCTCTCCCCTTTTCCCACCG	0.542000													3	200	---	---	---	---	0	0	0.115264	0	0
FGD3	89846	broad.mit.edu	37	9	95797678	95797678	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr9:95797678C>T	uc004asw.2	+	18	2613	c.1985C>T	c.(1984-1986)CCT>CTT	p.P662L	FGD3_uc004asx.2_Missense_Mutation_p.P661L|FGD3_uc004asz.2_Missense_Mutation_p.P662L|FGD3_uc011luc.1_Missense_Mutation_p.P265L	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	662	PH 2.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GTGCCGGACCCTGAGGAGAGG	0.672000													6	13	---	---	---	---	0	0	0.047766	0	0
DDX3Y	8653	broad.mit.edu	37	Y	15024673	15024673	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chrY:15024673A>G	uc004fsu.1	+	6	625	c.316A>G	c.(316-318)ATT>GTT	p.I106V	DDX3Y_uc010nwv.1_Missense_Mutation_p.I106V|DDX3Y_uc011naq.1_Missense_Mutation_p.I106V|DDX3Y_uc004fsv.2_Missense_Mutation_p.I106V|DDX3Y_uc010nww.1_Intron|DDX3Y_uc011nar.1_Missense_Mutation_p.I103V	NM_001122665	NP_001116137	O15523	DDX3Y_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,	106						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|RNA binding				0						CTATGATGGTATTGGCAATCG	0.433000													4	65	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	27534362	27534362	+	IGR	DEL	T	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr1:27534362delT								SLC9A1 (52911 upstream) : WDTC1 (26645 downstream)																							CTGGCTGTCCTTTTTTTTTTT	0.184													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	120007963	120007964	+	IGR	INS	-	GGAAGGAA	GGAAGGAA	rs71500885		TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr10:120007963_120007964insGGAAGGAA								CASC2 (38304 upstream) : C10orf84 (60608 downstream)																							gggggagggagggagggaagga	0.005													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	33452396	33452397	+	IGR	INS	-	AAGG	AAGG	rs143444187	by1000genomes	TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr12:33452396_33452397insAAGG								PKP2 (402616 upstream) : SYT10 (75951 downstream)																							gaaagaaaggaaaggaaggaag	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31652513	31652520	+	IGR	DEL	AAGAAAGA	-	-	rs7986217		TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr13:31652513_31652520delAAGAAAGA								C13orf26 (103362 upstream) : HSPH1 (58245 downstream)																							ggaaggaaggaagaaagaaagaaagaaa	0.192													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32490382	32490382	+	IGR	DEL	A	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr16:32490382delA								HERC2P4 (326508 upstream) : TP53TG3B (194459 downstream)																							ACAAGAGACCAGGGGGATAAG	0.393													3	6	---	---	---	---					
TERF2IP	54386	broad.mit.edu	37	16	75690204	75690206	+	In_Frame_Del	DEL	GAA	-	-	rs140846731		TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr16:75690204_75690206delGAA	uc002fet.1	+	3	992_994	c.895_897delGAA	c.(895-897)GAAdel	p.E304del		NM_018975	NP_061848	Q9NYB0	TE2IP_HUMAN	telomeric repeat binding factor 2, interacting	304	Asp/Glu-rich (acidic).				negative regulation of DNA recombination at telomere|negative regulation of telomere maintenance|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of double-strand break repair via homologous recombination|telomere maintenance via telomerase|transcription, DNA-dependent	cytoplasm|nuclear telomere cap complex|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1						TGATgaggaggaagaagaagaag	0.369													8	123	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	181640821	181640824	+	IGR	DEL	TTCC	-	-	rs114652661	by1000genomes	TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr2:181640821_181640824delTTCC								CWC22 (768981 upstream) : UBE2E3 (204288 downstream)																							TTTTCGTTGGttccttccttcctt	0.260													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	21021964	21021965	+	IGR	DEL	TG	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr22:21021964_21021965delTG								MED15 (80046 upstream) : POM121L4P (21878 downstream)																							CTCTGTTGACTGTGTACATCGT	0.500													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	176487523	176487528	+	IGR	DEL	GAGGAG	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr3:176487523_176487528delGAGGAG								NAALADL2 (964097 upstream) : TBL1XR1 (251015 downstream)																							gaaagagagagaggagggagggaggg	0.015													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	10412981	10412982	+	IGR	INS	-	CT	CT	rs143148489		TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr4:10412981_10412982insCT								WDR1 (294408 upstream) : ZNF518B (28523 downstream)																							acagagcaagactgtctcaaaa	0.144													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	19004163	19004166	+	IGR	DEL	CCTC	-	-	rs67370511	by1000genomes	TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr5:19004163_19004166delCCTC								None (None upstream) : CDH18 (468991 downstream)																							ttccttccttcctccctccctccc	0.029													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	171005598	171005601	+	IGR	DEL	AGGA	-	-	rs111722197		TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr5:171005598_171005601delAGGA								FGF18 (121436 upstream) : FBXW11 (282955 downstream)																							AGAGAGATAGaggaaggaaggaag	0.230													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	49826652	49826652	+	IGR	DEL	C	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chr8:49826652delC								EFCAB1 (178782 upstream) : SNAI2 (3587 downstream)																							TGTGGACTTGCCAAAAAAAGC	0.443													16	117	---	---	---	---					
ZC3H12B	340554	broad.mit.edu	37	X	64719805	64719805	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BJ-A0YZ-01A-11D-A10S-08	TCGA-BJ-A0YZ-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	e97e645e-024e-469f-8976-3798876197f3	9fd240bd-24f1-4679-82ba-c81437321e8d	g.chrX:64719805delC	uc010nko.2	+	4	1002	c.993delC	c.(991-993)AGCfs	p.S331fs		NM_001010888	NP_001010888	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	331							endonuclease activity|nucleic acid binding|zinc ion binding			lung(1)|kidney(1)|pancreas(1)	3						ACGGCCCAAGCCTTGAAAATT	0.443													7	176	---	---	---	---					
