Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CSMD2	114784	broad.mit.edu	37	1	34089026	34089026	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr1:34089026G>T	uc001bxn.1	-	36	5575	c.5546C>A	c.(5545-5547)TCG>TAG	p.S1849*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.S1889*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.S762*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1849	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TACTTCCAGCGAGTCCCAGTT	0.502000													50	82	---	---	---	---	2.73381e-35	3.60366e-35	0.003610	1	0
DIO1	1733	broad.mit.edu	37	1	54360073	54360073	+	Missense_Mutation	SNP	A	G	G	rs143572229		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr1:54360073A>G	uc010onx.1	+	1	213	c.190A>G	c.(190-192)ACC>GCC	p.T64A	DIO1_uc010onw.1_Intron|DIO1_uc009vzl.2_Missense_Mutation_p.T64A|DIO1_uc001cwb.2_Missense_Mutation_p.T64A|DIO1_uc010ony.1_Missense_Mutation_p.T64A|DIO1_uc001cwd.2_Intron|DIO1_uc001cwe.2_Intron|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	64					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						CTGGATACCAACCTTTTTCAG	0.547000													69	139	---	---	---	---	0	0	0.003610	0	0
C10orf50	645528	broad.mit.edu	37	10	26880338	26880338	+	RNA	SNP	G	C	C	rs3118888	by1000genomes	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr10:26880338G>C	uc001ist.2	+	2		c.573G>C				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						GCTGAAACATGGAAGGTAAAA	0.483000													3	31	---	---	---	---	0	0	0.000248	0	0
MAP3K8	1326	broad.mit.edu	37	10	30736732	30736732	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr10:30736732C>T	uc001ivi.1	+	4	1054	c.358C>T	c.(358-360)CGT>TGT	p.R120C	MAP3K8_uc009xlf.1_Missense_Mutation_p.R120C|MAP3K8_uc001ivj.1_Missense_Mutation_p.R120C	NM_005204	NP_005195	P41279	M3K8_HUMAN	mitogen-activated protein kinase kinase kinase	120					cell cycle|T cell costimulation	cytosol	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			breast(3)|central_nervous_system(1)	4		Prostate(175;0.151)				CCAAAATGGACGTTACCAAAT	0.433000													80	122	---	---	---	---	0	0	0.003610	0	0
FAM196A	642938	broad.mit.edu	37	10	128974640	128974640	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr10:128974640C>T	uc001lju.1	-	1	61	c.20G>A	c.(19-21)GGC>GAC	p.G7D	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Missense_Mutation_p.G7D|FAM196A_uc001ljv.1_Missense_Mutation_p.G7D|FAM196A_uc009yap.1_Missense_Mutation_p.G7D	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	7										ovary(2)	2						TATGCATTTGCCGGTGTCCTT	0.527000													4	238	---	---	---	---	0	0	0.000248	0	0
CDHR5	53841	broad.mit.edu	37	11	624828	624828	+	Silent	SNP	G	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr11:624828G>T	uc001lqj.2	-	1	180	c.75C>A	c.(73-75)GCC>GCA	p.A25A	CDHR5_uc001lqk.2_Silent_p.A25A|CDHR5_uc009ycc.2_5'UTR|CDHR5_uc009ycd.2_Silent_p.A25A|CDHR5_uc001lql.2_Silent_p.A25A|CDHR5_uc001lqm.2_5'Flank|CDHR5_uc009yce.1_Silent_p.A25A|CDHR5_uc001lqn.1_Silent_p.A25A	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	25					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						ACTGGGCCTGGGCCATGGTCC	0.701000													7	15	---	---	---	---	0.00198382	0.00239711	0.001984	1	0
OR4C6	219432	broad.mit.edu	37	11	55433283	55433283	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr11:55433283C>T	uc001nht.3	+	3	906	c.641C>T	c.(640-642)GCG>GTG	p.A214V	OR4C6_uc010rik.1_Missense_Mutation_p.A214V	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						ATCTTAATTGCGTCCTACACG	0.522000													23	163	---	---	---	---	0	0	0.002299	0	0
NLRX1	79671	broad.mit.edu	37	11	119053828	119053828	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr11:119053828C>T	uc001pvu.2	+	10	2823	c.2608C>T	c.(2608-2610)CTC>TTC	p.L870F	NLRX1_uc001pvv.2_Intron|NLRX1_uc001pvw.2_Missense_Mutation_p.L870F|NLRX1_uc001pvx.2_Missense_Mutation_p.L870F|PDZD3_uc001pvy.2_5'Flank|PDZD3_uc001pvz.2_5'Flank|PDZD3_uc010rzd.1_5'Flank|PDZD3_uc001pwa.2_5'Flank|PDZD3_uc001pwb.2_5'Flank	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	870	LRR 7.|Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TCCTGCCAGCCTCTACTTCAA	0.592000													10	36	---	---	---	---	0	0	0.008291	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128840216	128840216	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr11:128840216A>C	uc009zcp.2	-	22	4850	c.4850T>G	c.(4849-4851)CTG>CGG	p.L1617R	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.L576R|ARHGAP32_uc001qez.2_Missense_Mutation_p.L1268R	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1617	Interaction with GAB2.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ATATTGGTACAGAGGTCTTGG	0.522000													44	44	---	---	---	---	0	0	0.008740	0	0
PABPN1	8106	broad.mit.edu	37	14	23792253	23792253	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr14:23792253C>T	uc001wjk.2	+	3	1794	c.512C>T	c.(511-513)GCC>GTC	p.A171V	PABPN1_uc001wjh.3_Missense_Mutation_p.A198V|PABPN1_uc001wjj.2_Missense_Mutation_p.A171V	NM_004643	NP_004634	Q86U42	PABP2_HUMAN	poly(A) binding protein, nuclear 1	171	Necessary for homooligomerization.				modification by virus of host mRNA processing|mRNA 3'-end processing|muscle contraction|nuclear mRNA splicing, via spliceosome|poly(A)+ mRNA export from nucleus|termination of RNA polymerase II transcription|viral infectious cycle	cytoplasm|nucleoplasm|ribonucleoprotein complex	nucleotide binding|protein binding|RNA binding			ovary(2)	2	all_cancers(95;6.69e-06)			GBM - Glioblastoma multiforme(265;0.00643)		GAGGCTGATGCCCGTTCCATC	0.438000													4	242	---	---	---	---	0	0	0.000602	0	0
ZC3H14	79882	broad.mit.edu	37	14	89075665	89075665	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr14:89075665T>C	uc001xww.2	+	14	2148	c.1923T>C	c.(1921-1923)TGT>TGC	p.C641C	ZC3H14_uc010twd.1_Silent_p.C641C|ZC3H14_uc010twe.1_Silent_p.C636C|ZC3H14_uc001xwx.2_Silent_p.C485C|ZC3H14_uc010twf.1_Silent_p.C355C|ZC3H14_uc001xwy.2_Silent_p.C476C|ZC3H14_uc010twg.1_Silent_p.C330C|ZC3H14_uc001xxa.2_Silent_p.C186C|ZC3H14_uc001xxc.2_Silent_p.C185C|ZC3H14_uc001xxb.2_Silent_p.C212C	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	641	C3H1-type 3.					cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						ACCCAAATTGTAAATATGATG	0.358000													3	154	---	---	---	---	0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106364007	106364007	+	Splice_Site	SNP	T	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr14:106364007T>C	uc010tyt.1	-	2912		c.47662_splice	c.e2912+1		KIAA0125_uc001ysq.2_Intron|KIAA0125_uc001ysr.2_Intron					Parts of antibodies, mostly variable regions.												0						CAGTGCTGTATAGGGGGCTCC	0.547000													2	4	---	---	---	---	0	0	0.004672	0	0
ZFP106	64397	broad.mit.edu	37	15	42713287	42713287	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr15:42713287A>C	uc001zpw.2	-	17	5755	c.5420T>G	c.(5419-5421)CTT>CGT	p.L1807R	ZFP106_uc001zpu.2_Missense_Mutation_p.L905R|ZFP106_uc001zpv.2_Missense_Mutation_p.L992R|ZFP106_uc001zpx.2_Missense_Mutation_p.L1035R	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	1807	WD 6.					nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		CATCAGATTAAGCCTCACGGC	0.413000													14	156	---	---	---	---	0	0	0.001855	0	0
BNC1	646	broad.mit.edu	37	15	83935700	83935700	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr15:83935700A>G	uc002bjt.1	-	3	411	c.323T>C	c.(322-324)CTA>CCA	p.L108P	BNC1_uc010uos.1_Missense_Mutation_p.L96P	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	108					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TAGGATTTTTAGGCGAACGGG	0.502000													3	151	---	---	---	---	0	0	0.004672	0	0
CORO7	79585	broad.mit.edu	37	16	4409369	4409369	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr16:4409369G>C	uc002cwh.3	-	23	2388	c.2268C>G	c.(2266-2268)TTC>TTG	p.F756L	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Missense_Mutation_p.F756L|CORO7_uc002cwg.3_Missense_Mutation_p.F536L|CORO7_uc010uxh.1_Missense_Mutation_p.F738L|CORO7_uc010uxi.1_Missense_Mutation_p.F671L|CORO7_uc002cwi.1_Missense_Mutation_p.F536L	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	756	WD 8.					cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						GCTCGTACAGGAATACACGGG	0.667000											OREG0023580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	28	---	---	---	---	0	0	0.003080	0	0
C16orf58	64755	broad.mit.edu	37	16	31504977	31504977	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr16:31504977C>G	uc002eci.1	-	8	917	c.905G>C	c.(904-906)AGG>ACG	p.R302T	C16orf58_uc002ech.1_5'UTR|C16orf58_uc010vfq.1_Missense_Mutation_p.R160T	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	302						integral to membrane				ovary(1)|breast(1)	2						TACCTCTCCCCTCTGAAGGTA	0.632000													10	58	---	---	---	---	0	0	0.000978	0	0
UBB	7314	broad.mit.edu	37	17	16285560	16285560	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr17:16285560T>C	uc002gpx.2	+	2	477	c.339T>C	c.(337-339)CCT>CCC	p.P113P	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	113	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AAGGCATCCCTCCCGACCAGC	0.557000													4	197	---	---	---	---	0	0	0.000248	0	0
GOSR1	9527	broad.mit.edu	37	17	28811716	28811716	+	Silent	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr17:28811716C>T	uc002hfe.2	+	4	302	c.276C>T	c.(274-276)ACC>ACT	p.T92T	GOSR1_uc002hfd.2_Silent_p.T90T|GOSR1_uc002hff.2_Silent_p.T27T|GOSR1_uc002hfc.1_Silent_p.T92T	NM_004871	NP_004862	O95249	GOSR1_HUMAN	golgi SNAP receptor complex member 1 isoform 1	92	Potential.|Cytoplasmic (Potential).				intra-Golgi vesicle-mediated transport|protein transport|retrograde transport, endosome to Golgi	Golgi membrane|integral to membrane|SNARE complex	SNAP receptor activity				0						CAGAATATACCAACAGTGCAG	0.363000													12	70	---	---	---	---	0	0	0.001368	0	0
NDC80	10403	broad.mit.edu	37	18	2599022	2599022	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr18:2599022A>G	uc002kli.2	+	12	1408	c.1226A>G	c.(1225-1227)GAA>GGA	p.E409G		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	409	Interaction with the N-terminus of CDCA1.|Interaction with PSMC2 and SMC1A.|Interaction with NEK2 and ZWINT.|Interaction with SMC1A.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						TTACAGATTGAAACACAATTA	0.289000													35	69	---	---	---	---	0	0	0.002836	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581535	40581535	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr19:40581535A>C	uc002omy.2	-	6	1039	c.814T>G	c.(814-816)TCT>GCT	p.S272A	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.S272A|ZNF780A_uc010xvh.1_Missense_Mutation_p.S273A	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	272					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TTTACACCAGAATGAATACTC	0.388000													4	426	---	---	---	---	0	0	0.000248	0	0
SUV420H2	84787	broad.mit.edu	37	19	55853326	55853326	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr19:55853326G>A	uc002qkj.3	+	2	270	c.22G>A	c.(22-24)GCA>ACA	p.A8T	SUV420H2_uc010esx.1_Missense_Mutation_p.A8T|SUV420H2_uc002qkk.1_Missense_Mutation_p.A8T|SUV420H2_uc002qkl.2_5'UTR	NM_032701	NP_116090	Q86Y97	SV422_HUMAN	suppressor of variegation 4-20 homolog 2	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding				0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CAGAGTGACAGCACGAGAACT	0.652000													9	143	---	---	---	---	0	0	0.006214	0	0
FAM179A	165186	broad.mit.edu	37	2	29274814	29274814	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr2:29274814C>T	uc010ezl.2	+	20	3266	c.2915C>T	c.(2914-2916)GCC>GTC	p.A972V	FAM179A_uc010ymm.1_Missense_Mutation_p.A917V|FAM179A_uc002rmr.3_Missense_Mutation_p.A499V	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	972							binding			ovary(3)|skin(1)	4						CTGGACTTTGCCGCCAGCCAG	0.657000													3	27	---	---	---	---	0	0	0.004672	0	0
ITSN1	6453	broad.mit.edu	37	21	35255856	35255856	+	Silent	SNP	T	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr21:35255856T>C	uc002yta.1	+	36	4825	c.4557T>C	c.(4555-4557)CCT>CCC	p.P1519P	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Silent_p.P1514P|ITSN1_uc002ytj.2_Silent_p.P1458P|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_RNA|ITSN1_uc002ytk.1_Intron	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1519	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CTTTCCAGCCTATTTTCCTAA	0.498000													3	243	---	---	---	---	0	0	0.004672	0	0
RRP7B	91695	broad.mit.edu	37	22	42971987	42971987	+	RNA	SNP	T	C	C	rs137064	by1000genomes	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr22:42971987T>C	uc003bcs.2	-	6		c.707A>G			RRP7B_uc003bct.2_RNA					Homo sapiens cDNA FLJ90011 fis, clone HEMBA1000443, highly similar to Gastric cancer antigen Zg14.												0						CAGCTCTTTTTGGCTGCGCTT	0.672000													3	35	---	---	---	---	0	0	0.004672	0	0
PPARA	5465	broad.mit.edu	37	22	46627935	46627935	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr22:46627935A>G	uc003bgw.1	+	8	1224	c.958A>G	c.(958-960)ATG>GTG	p.M320V	PPARA_uc003bgx.1_Missense_Mutation_p.M320V|PPARA_uc010hab.1_Missense_Mutation_p.M320V|PPARA_uc003bhb.1_Missense_Mutation_p.M320V|PPARA_uc010hac.1_Missense_Mutation_p.M117V	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	320	Ligand-binding.|Required for heterodimerization with RXRA.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	CATATTCGCCATGCTGTCTTC	0.463000													14	231	---	---	---	---	0	0	0.004007	0	0
DNAH1	25981	broad.mit.edu	37	3	52388985	52388985	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr3:52388985A>G	uc011bef.1	+	21	3868	c.3607A>G	c.(3607-3609)ATG>GTG	p.M1203V		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1203	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCACATCGTCATGACCCAGAA	0.557000													33	68	---	---	---	---	0	0	0.003755	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400850	11400850	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr4:11400850G>A	uc003gmq.2	-	2	1103	c.780C>T	c.(778-780)AGC>AGT	p.S260S		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	260						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GGTCCCGGCCGCTGTCCCGCA	0.502000													6	125	---	---	---	---	0	0	0.001168	0	0
UGT2A1	10941	broad.mit.edu	37	4	70460903	70460903	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr4:70460903C>A	uc003hem.3	-	4	1124	c.1061G>T	c.(1060-1062)TGG>TTG	p.W354L	UGT2A1_uc011caq.1_Missense_Mutation_p.W520L|UGT2A1_uc010ihu.2_Missense_Mutation_p.W354L|UGT2A1_uc010iht.2_Missense_Mutation_p.W310L|UGT2A1_uc010ihs.2_Missense_Mutation_p.W355L	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	354	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						CTGGGGTATCCAATCAAAGAG	0.363000													17	127	---	---	---	---	3.32936e-07	4.10857e-07	0.006122	1	0
FAT4	79633	broad.mit.edu	37	4	126336901	126336901	+	Silent	SNP	A	G	G			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr4:126336901A>G	uc003ifj.3	+	5	6783	c.6783A>G	c.(6781-6783)CTA>CTG	p.L2261L	FAT4_uc011cgp.1_Silent_p.L559L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2261	Extracellular (Potential).|Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TATTTGAGCTATCTCCATATT	0.388000													9	104	---	---	---	---	0	0	0.006214	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79768579	79768579	+	Splice_Site	SNP	G	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr5:79768579G>T	uc003kgr.3	+	16	4327	c.4025_splice	c.e16-1	p.D1342_splice	ZFYVE16_uc003kgq.3_Splice_Site_p.D1342_splice|ZFYVE16_uc003kgs.3_Splice_Site_p.D1342_splice|ZFYVE16_uc003kgt.3_Splice_Site_p.D430_splice|ZFYVE16_uc003kgu.3_Splice_Site_p.D94_splice	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16						BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		CTCATTTCTAGATGGCTTAAT	0.348000													36	82	---	---	---	---	2.51966e-14	3.17696e-14	0.003610	1	0
TGFBI	7045	broad.mit.edu	37	5	135390519	135390519	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr5:135390519G>A	uc003lbf.3	+	10	1540	c.1379G>A	c.(1378-1380)GGC>GAC	p.G460D	TGFBI_uc003lbg.3_Missense_Mutation_p.G193D|TGFBI_uc003lbh.3_Missense_Mutation_p.G286D|TGFBI_uc011cyb.1_Missense_Mutation_p.G286D|TGFBI_uc010jed.2_Missense_Mutation_p.G193D	NM_000358	NP_000349	Q15582	BGH3_HUMAN	transforming growth factor, beta-induced, 68kDa	460	FAS1 3.				angiogenesis|cell adhesion|cell proliferation|negative regulation of cell adhesion|response to stimulus|visual perception	extracellular space|proteinaceous extracellular matrix	integrin binding			breast(3)|ovary(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACTCTGGGCGGCAAAAAACTG	0.423000													6	356	---	---	---	---	0	0	0.001984	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33043841	33043841	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr6:33043841C>T	uc003ocu.1	+	1	82	c.23C>T	c.(22-24)GCG>GTG	p.A8V	HLA-DPA1_uc003ocs.1_5'Flank|HLA-DPA1_uc010juk.2_5'Flank|HLA-DPA1_uc003oct.1_Intron|HLA-DPB1_uc011dqn.1_RNA|HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Missense_Mutation_p.A7V	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	8					antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						CAGGTTTCTGCGGCCCCCCGG	0.547000													3	40	---	---	---	---	0	0	0.004672	0	0
CPNE5	57699	broad.mit.edu	37	6	36710082	36710082	+	Missense_Mutation	SNP	C	T	T	rs3830138	byFrequency	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr6:36710082C>T	uc003omr.1	-	21	1812	c.1745G>A	c.(1744-1746)CGC>CAC	p.R582H	CPNE5_uc003omp.1_Missense_Mutation_p.R290H|CPNE5_uc010jwn.1_Missense_Mutation_p.R232H|CPNE5_uc003omq.1_Missense_Mutation_p.R232H	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	582										skin(1)	1						AGGGGGCGTGCGGGCTGGGGA	0.687000													4	72	---	---	---	---	0	0	0.000248	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681934	76681934	+	RNA	SNP	G	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr7:76681934G>C	uc003ufy.2	+	5		c.1911G>C				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						gtatttttgtggagaggggat	0.169000													3	14	---	---	---	---	0	0	0.004672	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962796	88962796	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr7:88962796T>C	uc011khi.1	+	4	1038	c.500T>C	c.(499-501)CTC>CCC	p.L167P		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	167						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AGTGCTCTTCTCCTTAAAGGA	0.443000										HNSCC(36;0.09)			4	107	---	---	---	---	0	0	0.000248	0	0
PTPRD	5789	broad.mit.edu	37	9	8465600	8465600	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr9:8465600C>T	uc003zkk.2	-	31	4291	c.3580G>A	c.(3580-3582)GCT>ACT	p.A1194T	PTPRD_uc003zkp.2_Missense_Mutation_p.A783T|PTPRD_uc003zkq.2_Missense_Mutation_p.A783T|PTPRD_uc003zkr.2_Missense_Mutation_p.A778T|PTPRD_uc003zks.2_Missense_Mutation_p.A773T|PTPRD_uc003zkl.2_Missense_Mutation_p.A1185T|PTPRD_uc003zkm.2_Missense_Mutation_p.A1181T|PTPRD_uc003zkn.2_Missense_Mutation_p.A783T|PTPRD_uc003zko.2_Missense_Mutation_p.A780T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1194	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCAAAGTGAGCGGCAATATAT	0.428000										TSP Lung(15;0.13)			54	98	---	---	---	---	0	0	0.003610	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670524	131670524	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr9:131670524A>C	uc004bwl.3	+	3	1335	c.1081A>C	c.(1081-1083)AGC>CGC	p.S361R	LRRC8A_uc010myp.2_Missense_Mutation_p.S361R|LRRC8A_uc010myq.2_Missense_Mutation_p.S361R	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	361					pre-B cell differentiation	integral to membrane					0						TGAGGAGAGCAGCTACAGCGA	0.547000													39	62	---	---	---	---	0	0	0.003610	0	0
MAGEE1	57692	broad.mit.edu	37	X	75650162	75650162	+	Silent	SNP	G	A	A			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chrX:75650162G>A	uc004ecm.1	+	1	2046	c.1839G>A	c.(1837-1839)CAG>CAA	p.Q613Q		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	613	MAGE 1.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						TGGGGGTGCAGCGGGAAAGGA	0.493000													6	84	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	10	42528030	42528030	+	IGR	DEL	G	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr10:42528030delG								None (None upstream) : LOC441666 (299285 downstream)																							attatatgaagaaatcccgtt	0.000													10	72	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	129497863	129497864	+	IGR	INS	-	TT	TT	rs10655206		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr12:129497863_129497864insTT								GLT1D1 (28354 upstream) : TMEM132D (58407 downstream)																							TGGCAGAATCCTTTTTTTTTTT	0.371													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	20211384	20211385	+	IGR	INS	-	AGAAAAAG	AGAAAAAG	rs142595033	by1000genomes	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr16:20211384_20211385insAGAAAAAG								GPR139 (126284 upstream) : GP2 (110427 downstream)																							gaaagaaagaaaaagaaagaaa	0.064													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	62740159	62740160	+	IGR	INS	-	AAGG	AAGG			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr17:62740159_62740160insAAGG								SMURF2 (81773 upstream) : LOC146880 (5621 downstream)																							agaaagaaggaaaggaaggaag	0.040													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	21817605	21817605	+	IGR	DEL	G	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr19:21817605delG								ZNF429 (78537 upstream) : ZNF100 (89239 downstream)																							aaaaaaaaaagaaaaaaacaa	0.104													4	6	---	---	---	---					
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807594	48807594	+	5'Flank	DEL	T	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr2:48807594delT	uc010yol.1	+						STON1_uc002rwo.3_Intron|STON1_uc010fbm.2_Intron|STON1-GTF2A1L_uc002rwp.1_Intron|STON1_uc002rwr.2_5'Flank|STON1_uc002rwq.2_5'Flank	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1						endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ttggatcatgtttttttttta	0.100													5	8	---	---	---	---					
MIR663B	100302269	broad.mit.edu	37	2	133014651	133014652	+	RNA	INS	-	C	C	rs150907057		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr2:133014651_133014652insC	hsa-mir-663b|MI0006336	-			c.2_3insC			NCRNA00164_uc002ttj.3_Intron																	0						GGCCCTCGGCACCACCGAGACC	0.678													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	26113543	26113543	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr20:26113543delA								C20orf191 (18866 upstream) : MIR663 (75279 downstream)																							TCTTTGCCTTAACAACATTAT	0.363													2	4	---	---	---	---					
CEP170L	645455	broad.mit.edu	37	4	119436577	119436577	+	5'Flank	DEL	T	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr4:119436577delT	uc003icb.2	+							NR_003135				RecName: Full=Cep170-like protein;												0						TGGGGGCTCCTTTTTTTTTTT	0.403													8	12	---	---	---	---					
CCT5	22948	broad.mit.edu	37	5	10250047	10250047	+	5'Flank	DEL	C	-	-	rs2607301		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr5:10250047delC	uc003jeq.2	+						FAM173B_uc003jeo.2_5'Flank|FAM173B_uc003jep.2_5'Flank|FAM173B_uc010itr.2_5'Flank|CCT5_uc011cmq.1_5'Flank|CCT5_uc003jer.2_5'Flank|CCT5_uc010its.2_5'Flank|CCT5_uc011cmr.1_5'Flank|CCT5_uc011cms.1_5'Flank|CCT5_uc011cmt.1_5'Flank	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)						'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						aaaaaaaaaaCCGGAAATGGG	0.423													5	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	20095674	20095675	+	IGR	INS	-	AAGAAAGG	AAGAAAGG	rs59909046		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr5:20095674_20095675insAAGAAAGG								CDH18 (107367 upstream) : None (None downstream)																							gaaagaaaggaaagaaaggaag	0.054													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	25518370	25518381	+	IGR	DEL	AGGAAGGGAGGG	-	-	rs113509212	by1000genomes	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr7:25518370_25518381delAGGAAGGGAGGG								NPVF (250265 upstream) : MIR148A (471158 downstream)																							gaaggaaggaaggaagggagggaggaaggaag	0.274													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	15300685	15300685	+	IGR	DEL	C	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr8:15300685delC								SGCZ (204893 upstream) : TUSC3 (97045 downstream)																							tccttcctttcttttttttag	0.020													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	104029685	104029685	+	IGR	DEL	A	-	-			TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr8:104029685delA								AZIN1 (153288 upstream) : ATP6V1C1 (3563 downstream)																							AGAATATATTAAAAGCAAAAA	0.348													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	138016583	138016586	+	IGR	DEL	AAGG	-	-	rs72035885	by1000genomes	TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chr9:138016583_138016586delAAGG								OLFM1 (3552 upstream) : KIAA0649 (355062 downstream)																							gaaagaaagaaaggaaggaaggaa	0.216													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	24378602	24378609	+	IGR	DEL	ACACACGT	-	-	rs55833863		TCGA-BJ-A0ZF-01A-11D-A10S-08	TCGA-BJ-A0ZF-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	362c568e-71ea-44ff-89a4-12f2a88c4134	36a50022-0a00-48e8-844d-92cf8c0758de	g.chrX:24378602_24378609delACACACGT								FAM48B2 (47170 upstream) : FAM48B1 (2269 downstream)																							acacacacacacacacgtacacacatac	0.284													2	4	---	---	---	---					
