Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BAI2	576	broad.mit.edu	37	1	32207698	32207698	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr1:32207698C>T	uc001btn.2	-	8	1727	c.1373G>A	c.(1372-1374)GGT>GAT	p.G458D	BAI2_uc010ogo.1_Missense_Mutation_p.G100D|BAI2_uc010ogp.1_Missense_Mutation_p.G391D|BAI2_uc010ogq.1_Missense_Mutation_p.G458D|BAI2_uc001bto.2_Missense_Mutation_p.G458D|BAI2_uc001btq.1_Missense_Mutation_p.G391D|BAI2_uc010ogr.1_Missense_Mutation_p.G391D	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	458	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		AGTGAGGGCACCCGTGCATGT	0.677000													4	38	---	---	---	---	0	0	0.150653	0	0
CYP2C8	1558	broad.mit.edu	37	10	96802700	96802700	+	Missense_Mutation	SNP	C	T	T	rs147133669		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:96802700C>T	uc001kkb.2	-	7	1191	c.1096G>A	c.(1096-1098)GTG>ATG	p.V366M	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.V296M|CYP2C8_uc010qob.1_Missense_Mutation_p.V280M|CYP2C8_uc010qoc.1_Missense_Mutation_p.V264M|CYP2C8_uc010qod.1_Missense_Mutation_p.V280M	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	366					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	GCATGGGGCACACCGGTGGGG	0.488000													4	113	---	---	---	---	0	0	0.150653	0	0
CHRM4	1132	broad.mit.edu	37	11	46407206	46407206	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr11:46407206G>A	uc001nct.1	-	1	902	c.902C>T	c.(901-903)GCC>GTC	p.A301V		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	301	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	GTTCTGGGTGGCACTGCCTGA	0.697000													3	44	---	---	---	---	0	0	0.150653	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028826	13028826	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr12:13028826G>A	uc010sho.1	+	1	416	c.394G>A	c.(394-396)GCA>ACA	p.A132T		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						TCTGAAGCCTGCAAGAAAGTT	0.567000													4	15	---	---	---	---	0	0	0.184627	0	0
CRY1	1407	broad.mit.edu	37	12	107415951	107415951	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr12:107415951C>T	uc001tmi.3	-	2	1037	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	60	DNA photolyase.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						TCAAGATCCTCAAGACACTGA	0.308000													5	85	---	---	---	---	0	0	0.248553	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299000													3	13	---	---	---	---	0	0	0.150653	0	0
LOC284232	284232	broad.mit.edu	37	13	19413033	19413033	+	RNA	SNP	G	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr13:19413033G>A	uc010tcj.1	-	1		c.33077C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCACATCCATGCACTAAAAAG	0.294000													3	12	---	---	---	---	0	0	0.150653	0	0
LGMN	5641	broad.mit.edu	37	14	93172867	93172867	+	Silent	SNP	C	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr14:93172867C>A	uc001yav.2	-	13	1478	c.1152G>T	c.(1150-1152)CTG>CTT	p.L384L	LGMN_uc001yat.2_Intron|LGMN_uc001yau.2_Intron|LGMN_uc001yaw.2_Silent_p.L384L|LGMN_uc010aul.2_Silent_p.L265L|LGMN_uc001yax.2_Intron|LGMN_uc001yay.2_Intron	NM_001008530	NP_001008530	Q99538	LGMN_HUMAN	legumain preproprotein	384					hormone biosynthetic process|negative regulation of neuron apoptosis|vitamin D metabolic process	lysosome	cysteine-type endopeptidase activity|protein serine/threonine kinase activity			skin(1)	1		all_cancers(154;0.0706)		COAD - Colon adenocarcinoma(157;0.224)		TCCGGAAGTGCAGCAGGGCCT	0.627000													3	55	---	---	---	---	2.56e-06	2.77333e-06	0.150653	1	0
Unknown	0	broad.mit.edu	37	15	20170018	20170018	+	IGR	SNP	C	G	G	rs140304162	by1000genomes	TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr15:20170018C>G								None (None upstream) : GOLGA6L6 (567076 downstream)																							GGTGACTCTGCCCTGGAACTT	0.547000													3	122	---	---	---	---	0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	15	20170029	20170029	+	IGR	SNP	C	T	T	rs144252881	by1000genomes	TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr15:20170029C>T								None (None upstream) : GOLGA6L6 (567065 downstream)																							CCTGGAACTTCTGTGCATAGC	0.547000													4	100	---	---	---	---	0	0	0.184627	0	0
C16orf70	80262	broad.mit.edu	37	16	67173971	67173971	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr16:67173971T>G	uc002erc.2	+	10	830	c.746T>G	c.(745-747)CTT>CGT	p.L249R	C16orf70_uc002erd.2_Missense_Mutation_p.L249R	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	249										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		CAAGATGTTCTTAGCATGCTT	0.408000													4	81	---	---	---	---	0	0	0.150653	0	0
KIAA0895L	653319	broad.mit.edu	37	16	67214355	67214355	+	Silent	SNP	G	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr16:67214355G>A	uc002ert.2	-	2	934	c.159C>T	c.(157-159)GTC>GTT	p.V53V	KIAA0895L_uc002err.2_5'Flank|KIAA0895L_uc002ers.2_5'Flank|KIAA0895L_uc002eru.2_Silent_p.V53V|EXOC3L_uc002erv.1_RNA	NM_001040715	NP_001035805	Q68EN5	K895L_HUMAN	hypothetical protein LOC653319	53	Pro-rich.										0						GCGCTGGGGGGACTGCCAGAG	0.657000													8	14	---	---	---	---	0	0	0.307466	0	0
ACAP1	9744	broad.mit.edu	37	17	7251632	7251632	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr17:7251632A>G	uc002ggd.2	+	17	1722	c.1516A>G	c.(1516-1518)AAG>GAG	p.K506E		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	506	Arf-GAP.|Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						CAGGCAGGAGAAGGAGGCCTG	0.627000													7	23	---	---	---	---	0	0	0.278610	0	0
EIF4A1	1973	broad.mit.edu	37	17	7481488	7481488	+	Silent	SNP	A	G	G			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr17:7481488A>G	uc002gho.1	+	18	2327	c.1002A>G	c.(1000-1002)AGA>AGG	p.R334R	EIF4A1_uc002ghr.1_Intron|EIF4A1_uc002ghq.1_Intron|EIF4A1_uc002ghp.1_Silent_p.R334R|CD68_uc002ghv.2_5'Flank|CD68_uc002ghu.2_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A	334	Helicase C-terminal.				nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						CGTAGGCCAGAGGCATTGATG	0.507000													3	74	---	---	---	---	0	0	0.150653	0	0
LOC644669	644669	broad.mit.edu	37	18	15323276	15323276	+	RNA	SNP	A	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr18:15323276A>T	uc002ktd.1	-	3		c.183T>A				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						ATCAACTGCAATTGCATTTGC	0.308000													3	17	---	---	---	---	0	0	0.217242	0	0
LAMA3	3909	broad.mit.edu	37	18	21396413	21396413	+	Silent	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr18:21396413C>T	uc002kuq.2	+	18	2195	c.2109C>T	c.(2107-2109)TGC>TGT	p.C703C	LAMA3_uc002kur.2_Silent_p.C703C	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	703	Domain V.|Laminin EGF-like 8.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CGGGAGTGTGCCAGTGCCGAG	0.547000													3	43	---	---	---	---	0	0	0.115264	0	0
HAS1	3036	broad.mit.edu	37	19	52219536	52219536	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr19:52219536C>T	uc002pxo.1	-	4	1069	c.1034G>A	c.(1033-1035)CGC>CAC	p.R345H	HAS1_uc010epc.1_Intron|HAS1_uc010epd.1_Missense_Mutation_p.R310H|HAS1_uc002pxn.1_Missense_Mutation_p.R352H|HAS1_uc002pxp.1_Missense_Mutation_p.R344H	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	345	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GCTGAGCATGCGGTTGGTGAG	0.522000													7	75	---	---	---	---	0	0	0.278610	0	0
NPAS2	4862	broad.mit.edu	37	2	101564729	101564729	+	Silent	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr2:101564729C>T	uc002tap.1	+	6	682	c.396C>T	c.(394-396)TTC>TTT	p.F132F	NPAS2_uc010yvt.1_Silent_p.F197F	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	132	PAS 1.				central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						TGTTAAATTTCCTCCCAGAAC	0.348000													32	47	---	---	---	---	0	0	0.788014	0	0
GNAS	2778	broad.mit.edu	37	20	57484597	57484597	+	Missense_Mutation	SNP	G	T	T	rs137854533		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr20:57484597G>T	uc002xzw.2	+	9	2895	c.2610G>T	c.(2608-2610)CAG>CAT	p.Q870H	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.Q168H|GNAS_uc002xzx.2_Missense_Mutation_p.Q168H|GNAS_uc010gjr.2_Missense_Mutation_p.Q118H|GNAS_uc002xzy.2_Missense_Mutation_p.Q153H|GNAS_uc002yaa.2_Missense_Mutation_p.Q213H|GNAS_uc010zzt.1_Missense_Mutation_p.Q228H|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Missense_Mutation_p.Q118H|GNAS_uc002yae.2_Missense_Mutation_p.Q152H	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	227	GTP (By similarity).		Q -> R (in somatotrophinoma).|Q -> H (in pituitary adenoma; ACTH- secreting adenoma; in a patient with severe Cushing syndrome complicated by psychosis).		activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity	p.Q227H(7)		pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			TGGGTGGCCAGCGCGATGAAC	0.512000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			13	35	---	---	---	---	2.23348e-06	2.52481e-06	0.500413	1	0
DHX30	22907	broad.mit.edu	37	3	47890987	47890987	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr3:47890987G>T	uc003cru.2	+	20	3560	c.3134G>T	c.(3133-3135)AGC>ATC	p.S1045I	DHX30_uc003crt.2_Missense_Mutation_p.S1006I|MIR1226_hsa-mir-1226|MI0006313_5'Flank	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	1045						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AAGCCCAACAGCGTCACATAT	0.592000													4	54	---	---	---	---	0.00024832	0.000258253	0.150653	1	0
TIPARP	25976	broad.mit.edu	37	3	156421217	156421217	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr3:156421217C>T	uc003fav.2	+	5	1500	c.1252C>T	c.(1252-1254)CTT>TTT	p.L418F	TIPARP_uc003faw.2_Missense_Mutation_p.L418F	NM_015508	NP_056323	Q7Z3E1	PARPT_HUMAN	TCDD-inducible poly(ADP-ribose) polymerase	418							NAD+ ADP-ribosyltransferase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|breast(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			TTTTAGGACACTTGGTGGGGT	0.383000													5	42	---	---	---	---	0	0	0.248553	0	0
RAI14	26064	broad.mit.edu	37	5	34826488	34826488	+	Silent	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr5:34826488C>T	uc003jir.2	+	16	2899	c.2703C>T	c.(2701-2703)CTC>CTT	p.L901L	RAI14_uc010iur.2_Silent_p.L872L|RAI14_uc011coj.1_Silent_p.L901L|RAI14_uc003jis.2_Silent_p.L904L|RAI14_uc003jit.2_Silent_p.L901L|RAI14_uc011cok.1_Silent_p.L893L	NM_015577	NP_056392	Q9P0K7	RAI14_HUMAN	retinoic acid induced 14 isoform a	901	Potential.					cell cortex|cytoskeleton	protein binding			ovary(1)	1	all_lung(31;0.000191)					TGAACAGCCTCTCCCAGCTCT	0.498000													28	49	---	---	---	---	0	0	0.706142	0	0
DOCK5	80005	broad.mit.edu	37	8	25226092	25226092	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr8:25226092C>T	uc003xeg.2	+	33	3426	c.3289C>T	c.(3289-3291)CAC>TAC	p.H1097Y	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.H811Y|DOCK5_uc003xei.2_Missense_Mutation_p.H667Y|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	1097						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		TTCAGGTCCCCACAAAATCAA	0.393000													14	41	---	---	---	---	0	0	0.457914	0	0
Unknown	0	broad.mit.edu	37	1	121484538	121484538	+	IGR	DEL	A	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr1:121484538delA								LOC647121 (170852 upstream) : None (None downstream)																							ctttggggccaaaggcagaaa	0.000													9	2665	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484541	121484541	+	IGR	DEL	G	-	-	rs4897896		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr1:121484541delG								LOC647121 (170855 upstream) : None (None downstream)																							tggggccaaaggcagaaaagg	0.000													7	2689	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121485403	121485403	+	IGR	DEL	A	-	-	rs59226026		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr1:121485403delA								LOC647121 (171717 upstream) : None (None downstream)																							tggaaacgggatttcttcata	0.005													12	1434	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	27620447	27620448	+	IGR	INS	-	TT	TT	rs142562667	by1000genomes	TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:27620447_27620448insTT								LOC387646 (79212 upstream) : PTCHD3 (66669 downstream)																							ACTCAGGCTTCTTTCCGCCAAG	0.465													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384710	42384710	+	IGR	DEL	T	-	-	rs151222414		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42384710delT								None (None upstream) : LOC441666 (442605 downstream)																							ttgaacggaatcgaatggaat	0.000													10	825	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													7	1919	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396098	42396098	+	IGR	DEL	G	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42396098delG								None (None upstream) : LOC441666 (431217 downstream)																							gaactcgaatggaatcatcat	0.000													8	1417	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396183	42396184	+	IGR	INS	-	A	A	rs150255523		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42396183_42396184insA								None (None upstream) : LOC441666 (431131 downstream)																							gtaatcatcatcaaatggaatc	0.000													7	2717	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42399274	42399274	+	IGR	DEL	T	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42399274delT								None (None upstream) : LOC441666 (428041 downstream)																							ttgtgttgtgtgtattcaact	0.000													7	471	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													8	1447	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42408305	42408306	+	IGR	INS	-	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42408305_42408306insT								None (None upstream) : LOC441666 (419009 downstream)																							ttgaaacactctttttgcagaa	0.000													12	539	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529341	42529341	+	IGR	DEL	A	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42529341delA								None (None upstream) : LOC441666 (297974 downstream)																							agttgaatacacacaacacaa	0.000													10	420	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597159	42597159	+	IGR	DEL	T	-	-	rs149908177		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr10:42597159delT								None (None upstream) : LOC441666 (230156 downstream)																							ttgaacggaatcgaatggaat	0.035													15	1915	---	---	---	---					
ZNF259	8882	broad.mit.edu	37	11	116658800	116658801	+	5'Flank	INS	-	A	A			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr11:116658800_116658801insA	uc001ppp.2	-						ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank	NM_003904	NP_003895	O75312	ZPR1_HUMAN	zinc finger protein 259						cell proliferation|signal transduction	cytoplasm|nucleolus					0	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.61e-06)|all cancers(92;0.000139)|OV - Ovarian serous cystadenocarcinoma(223;0.153)		GCCACCACCCCAAAAAAAGCCG	0.639											OREG0003484	type=REGULATORY REGION|Gene=ZNF259|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46406908	46406910	+	IGR	DEL	ATG	-	-	rs142002187		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr16:46406908_46406910delATG								None (None upstream) : ANKRD26P1 (96339 downstream)																							tcgattccatatgatgatgactc	0.000													22	423	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	55819507	55819508	+	IGR	INS	-	T	T			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr16:55819507_55819508insT								CES4 (10683 upstream) : CES1 (17258 downstream)																							AAACGCTTAACTTTTTTTTTTA	0.386													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	88620068	88620069	+	IGR	INS	-	A	A	rs2340958		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr16:88620068_88620069insA								ZFPM1 (18495 upstream) : ZC3H18 (16720 downstream)																							gactccatccccccaaaaaaaa	0.168													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	8102780	8102780	+	IGR	DEL	T	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr17:8102780delT								C17orf59 (9216 upstream) : AURKB (5270 downstream)																							CCCTGGCCTATTTTTTTTTTT	0.358													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													16	1426	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18517211	18517211	+	IGR	DEL	C	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr18:18517211delC								None (None upstream) : ROCK1 (12494 downstream)																							gaaatgtcttcccataaaaac	0.000													8	736	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27731986	27731989	+	IGR	DEL	TGTT	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr19:27731986_27731989delTGTT								None (None upstream) : LOC148189 (549413 downstream)																							ggaaacactctgtttgtaaagtct	0.000													12	1008	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr19:27732215_27732216insC								None (None upstream) : LOC148189 (549186 downstream)																							agaaaaggaaatatcttcgtat	0.000													34	2332	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	96517784	96517786	+	IGR	DEL	TAA	-	-	rs113889919		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr2:96517784_96517786delTAA								TRIM43 (252317 upstream) : LOC729234 (158513 downstream)																							AAAGACATACTAATTATCATAAC	0.291													2	4	---	---	---	---					
ALPP	250	broad.mit.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr2:233243529_233243531delTGC	uc002vsq.2	+	1	182_184	c.17_19delTGC	c.(16-21)ATGCTG>ATG	p.L13del	ALPP_uc002vsr.2_5'Flank	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	13						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GGGCCCTGCAtgctgctgctgct	0.542													7	65	---	---	---	---					
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr20:56099187delT	uc010gix.1	-	1	737	c.75delA	c.(73-75)AAAfs	p.K25fs	CTCFL_uc010giw.1_Frame_Shift_Del_p.K25fs|CTCFL_uc002xym.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjb.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjc.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjd.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gje.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjk.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjl.1_Frame_Shift_Del_p.K25fs	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													7	390	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778285	58778285	+	IGR	DEL	C	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr6:58778285delC								GUSBL2 (490561 upstream) : None (None downstream)																							atcttataaacccagacagaa	0.000													16	603	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57929339	57929342	+	IGR	DEL	TTTG	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr7:57929339_57929342delTTTG								ZNF716 (396074 upstream) : None (None downstream)																							CACATTCTGATTTGTTTTTTGTAT	0.363													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr7:61968770delG								None (None upstream) : LOC643955 (782902 downstream)																							ttgaaacactgtttttgcgga	0.000													34	472	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970472	61970472	+	IGR	DEL	C	-	-	rs4302722		TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr7:61970472delC								None (None upstream) : LOC643955 (781200 downstream)																							ttgaaacactctttttgcgga	0.000													11	1142	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	46841783	46841784	+	IGR	INS	-	G	G			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr8:46841783_46841784insG								None (None upstream) : BEYLA (910724 downstream)																							tggatagctttgaggatttcgt	0.000													8	239	---	---	---	---					
TG	7038	broad.mit.edu	37	8	133945834	133945835	+	Frame_Shift_Ins	INS	-	TTCACCG	TTCACCG			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr8:133945834_133945835insTTCACCG	uc003ytw.2	+	24	4886_4887	c.4845_4846insTTCACCG	c.(4843-4848)TTCTTCfs	p.F1615fs	TG_uc010mdw.2_Frame_Shift_Ins_p.F374fs|TG_uc011ljb.1_Frame_Shift_Ins_p.F48fs	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1615_1616	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCTGCAGCTTCTTCACCGTGTC	0.574													16	107	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	90460007	90460008	+	IGR	DEL	CT	-	-			TCGA-BJ-A3F0-01A-11D-A202-08	TCGA-BJ-A3F0-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	0715a737-9c4b-41e4-8a79-0701999c9c2e	e53739f1-a4ec-4515-8d37-2726f2608741	g.chr9:90460007_90460008delCT								CTSL3 (58208 upstream) : C9orf79 (37733 downstream)																							AAAAGTCTTGCTCtgtgtgtgt	0.292													2	4	---	---	---	---					
