Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MACF1	23499	broad.mit.edu	37	1	39847746	39847746	+	Silent	SNP	G	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:39847746G>A	uc010oiu.1	+	20	9221	c.9090G>A	c.(9088-9090)GAG>GAA	p.E3030E	MACF1_uc010ois.1_Silent_p.E2528E|MACF1_uc001cda.1_Silent_p.E2415E|MACF1_uc001cdc.1_Silent_p.E1594E	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4595					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGCTGATGGAGAAAGAACTGA	0.532000													3	64	---	---	---	---	0	0	0.004672	0	0
NBPF10	100132406	broad.mit.edu	37	1	145360640	145360640	+	Missense_Mutation	SNP	C	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:145360640C>G	uc001end.3	+	76	9525	c.9490C>G	c.(9490-9492)CTT>GTT	p.L3164V	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.L462V	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3089											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TTCAGGTTGTCTTGAACTGTG	0.493000													2	6	---	---	---	---	0	0	0.004672	0	0
OR6K6	128371	broad.mit.edu	37	1	158725536	158725536	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:158725536T>C	uc001fsw.1	+	1	931	c.931T>C	c.(931-933)TTT>CTT	p.F311L		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	311	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CCTTGCTCCCTTTTTCAACCC	0.438000													3	135	---	---	---	---	0	0	0.004672	0	0
OR56B4	196335	broad.mit.edu	37	11	6129771	6129771	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:6129771C>A	uc010qzx.1	+	1	763	c.763C>A	c.(763-765)CTC>ATC	p.L255I		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCCTCATCCTCTTCCACAC	0.478000													4	83	---	---	---	---	0.000602214	0.000691431	0.014758	1	0
NAA40	79829	broad.mit.edu	37	11	63720256	63720256	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:63720256C>T	uc009yoz.2	+	6	566	c.439C>T	c.(439-441)CGG>TGG	p.R147W	NAA40_uc010rmw.1_Missense_Mutation_p.R107W|NAA40_uc010rmx.1_Missense_Mutation_p.R126W|NAA40_uc010rmy.1_RNA	NM_024771	NP_079047	Q86UY6	NAA40_HUMAN	N-acetyltransferase 11	147	N-acetyltransferase.						N-acetyltransferase activity				0						AAGCAAGGTGCGGCGGAAAGG	0.542000													4	118	---	---	---	---	0	0	0.021553	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													3	106	---	---	---	---	0	0	0.009096	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275958	130275958	+	Missense_Mutation	SNP	C	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:130275958C>T	uc001qgg.3	-	9	2523	c.2165G>A	c.(2164-2166)AGC>AAC	p.S722N	ADAMTS8_uc001qgf.2_Missense_Mutation_p.S203N	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	722	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		ACCCGGGTGGCTCCGCTGCTT	0.542000													93	131	---	---	---	---	0	0	0.048971	0	0
ERC1	23085	broad.mit.edu	37	12	1225197	1225197	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr12:1225197G>T	uc001qjb.2	+	7	1808	c.1567G>T	c.(1567-1569)GAG>TAG	p.E523*	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Nonsense_Mutation_p.E495*|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_Intron|ERC1_uc001qjf.2_Nonsense_Mutation_p.E523*|ERC1_uc010sdv.1_Nonsense_Mutation_p.E271*|ERC1_uc009zdp.2_Nonsense_Mutation_p.E163*	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	523	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			CCTGCAGACTGAGGTAGAAAC	0.428000													47	115	---	---	---	---	5.86059e-21	7.56993e-21	0.048971	1	0
OR4N5	390437	broad.mit.edu	37	14	20612596	20612596	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr14:20612596C>A	uc010tla.1	+	1	702	c.702C>A	c.(700-702)AGC>AGA	p.S234R		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		AAGGAAAGAGCAAGGCTATTT	0.502000													60	164	---	---	---	---	3.77215e-22	5.08421e-22	0.048971	1	0
LTBP2	4053	broad.mit.edu	37	14	74975354	74975354	+	Missense_Mutation	SNP	A	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr14:74975354A>G	uc001xqa.2	-	24	3992	c.3605T>C	c.(3604-3606)CTG>CCG	p.L1202P		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1202	Cys-rich.|EGF-like 12; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		AGGCGCGCACAGACAGAAGAA	0.627000													4	81	---	---	---	---	0	0	0.009096	0	0
NOX5	79400	broad.mit.edu	37	15	69331268	69331268	+	Silent	SNP	C	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr15:69331268C>A	uc002ars.1	+	9	1463	c.1443C>A	c.(1441-1443)ATC>ATA	p.I481I	NOX5_uc002arp.1_Silent_p.I463I|NOX5_uc002arq.1_Silent_p.I435I|NOX5_uc010bid.1_Silent_p.I446I|NOX5_uc002arr.1_Silent_p.I453I|NOX5_uc010bie.1_Silent_p.I281I|NOX5_uc010bif.1_Intron	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	481	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						ATCTGAACATCCCCACCATTG	0.453000													100	210	---	---	---	---	7.97055e-49	1.1766e-48	0.048971	1	0
ZNF844	284391	broad.mit.edu	37	19	12187307	12187307	+	Missense_Mutation	SNP	G	C	C			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:12187307G>C	uc002mtb.2	+	4	1515	c.1372G>C	c.(1372-1374)GAT>CAT	p.D458H	ZNF844_uc010dym.1_Missense_Mutation_p.D301H	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCAGATCTGCCTCA	0.423000													4	122	---	---	---	---	0	0	0.009096	0	0
ZNF799	90576	broad.mit.edu	37	19	12501446	12501446	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:12501446T>C	uc010dyt.2	-	4	1916	c.1766A>G	c.(1765-1767)GAA>GGA	p.E589G	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	589	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTCCTTACATTCATACGGGTT	0.413000													4	87	---	---	---	---	0	0	0.009096	0	0
USP34	9736	broad.mit.edu	37	2	61454269	61454269	+	Missense_Mutation	SNP	T	C	C			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:61454269T>C	uc002sbe.2	-	62	7550	c.7528A>G	c.(7528-7530)AGG>GGG	p.R2510G	USP34_uc002sbf.2_Missense_Mutation_p.R660G	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	2510					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GCAGCTGGCCTGTATTTTTCT	0.303000													3	78	---	---	---	---	0	0	0.014758	0	0
LOC728323	728323	broad.mit.edu	37	2	243061183	243061183	+	RNA	SNP	C	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:243061183C>T	uc010zpd.1	+	4		c.421C>T			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_RNA	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						ATTCAAGATACCCGAAGGTTC	0.358000													4	69	---	---	---	---	0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663087	+	RNA	DNP	TA	GG	GG	rs1054157	by1000genomes	TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr22:22663086_22663087TA>GG	uc011aim.1	+	29		c.1859_1860TA>GG			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCTT	0.302000													3	46	---	---	---	---	0	0	0.004672	0	0
GOLGB1	2804	broad.mit.edu	37	3	121409980	121409980	+	Missense_Mutation	SNP	G	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr3:121409980G>A	uc003eei.3	-	14	8342	c.8216C>T	c.(8215-8217)TCT>TTT	p.S2739F	GOLGB1_uc010hrc.2_Missense_Mutation_p.S2744F|GOLGB1_uc003eej.3_Missense_Mutation_p.S2705F	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2739	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GGAACTCATAGACCTTCCAAA	0.398000													6	176	---	---	---	---	0	0	0.038147	0	0
ARSI	340075	broad.mit.edu	37	5	149676882	149676882	+	Missense_Mutation	SNP	C	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr5:149676882C>A	uc003lrv.2	-	2	2194	c.1605G>T	c.(1603-1605)AGG>AGT	p.R535S		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	535						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGCTTCGAGCCCTCCCTTCCT	0.552000													109	161	---	---	---	---	5.99808e-64	9.29703e-64	0.048971	1	0
DNAH8	1769	broad.mit.edu	37	6	38775405	38775405	+	Missense_Mutation	SNP	C	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr6:38775405C>G	uc003ooe.1	+	22	3119	c.2519C>G	c.(2518-2520)GCT>GGT	p.A840G		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAGGTCTTTGCTTTTTTCTCT	0.343000													28	65	---	---	---	---	0	0	0.054565	0	0
TG	7038	broad.mit.edu	37	8	133920500	133920500	+	Missense_Mutation	SNP	G	C	C			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:133920500G>C	uc003ytw.2	+	18	3958	c.3917G>C	c.(3916-3918)TGC>TCC	p.C1306S	TG_uc010mdw.2_Missense_Mutation_p.C65S	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1306					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGCAAGATGTGCAGTGCTGAC	0.597000													47	72	---	---	---	---	0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	9	66458063	66458063	+	5'Flank	SNP	G	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr9:66458063G>T	uc010mng.1	-						uc004aeb.2_5'UTR|uc004aec.2_Intron					Homo sapiens cDNA, FLJ98602.																		GCACGGGGGCGGTCAACGGGG	0.607000													3	3	---	---	---	---	6.4e-05	7.63245e-05	0.004672	1	0
MEGF6	1953	broad.mit.edu	37	1	3528293	3528293	+	5'Flank	DEL	C	-	-	rs142220720		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:3528293delC	uc001akl.2	-							NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor							extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		ccgcccctagccccctcccct	0.259													8	4	---	---	---	---					
TNNI3K	51086	broad.mit.edu	37	1	74957824	74957826	+	In_Frame_Del	DEL	CTT	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:74957824_74957826delCTT	uc001dgf.1	+	23	2276_2278	c.2225_2227delCTT	c.(2224-2229)CCTTCT>CCT	p.S746del	TNNI3K_uc001dge.1_In_Frame_Del_p.S847del	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	746	Poly-Ser.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						TCTCTCTCACCTTCTTCTTCTTC	0.473													8	444	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	248085359	248085360	+	IGR	DEL	TG	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr1:248085359_248085360delTG								OR2T8 (103 upstream) : OR2L13 (15133 downstream)																							CTGTTGTCTCTGTGTGTGTGTG	0.356													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	22498484	22498485	+	IGR	INS	-	AGA	AGA	rs140751641	by1000genomes	TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr10:22498484_22498485insAGA								DNAJC1 (205834 upstream) : COMMD3 (106814 downstream)																							CAATGCCTATCAGATCACAGCA	0.455													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	30207981	30207983	+	IGR	DEL	TCC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr10:30207981_30207983delTCC								SVIL (182117 upstream) : KIAA1462 (93746 downstream)																							tgcctcctattcctcctcctcct	0.143													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	38931303	38931304	+	IGR	INS	-	T	T	rs142011881		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr10:38931303_38931304insT								LOC399744 (190223 upstream) : None (None downstream)																							ATGGAAAAAAATTGTAAAGTAT	0.272													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014144	125014146	+	IGR	DEL	ATC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr10:125014144_125014146delATC								BUB3 (89258 upstream) : GPR26 (411725 downstream)																							cgtcatcactatcatcatcatca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	132587370	132587371	+	IGR	INS	-	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr10:132587370_132587371insA								GLRX3 (604586 upstream) : TCERG1L (303285 downstream)																							gggagcaggggagcaggggagc	0.000													2	4	---	---	---	---					
ODF3	113746	broad.mit.edu	37	11	196097	196097	+	5'Flank	DEL	A	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:196097delA	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3						cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CATGGGGGGGACCTTGGTGAG	0.677													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	70943597	70943599	+	IGR	DEL	CTC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr11:70943597_70943599delCTC								SHANK2 (7789 upstream) : DHCR7 (201860 downstream)																							cccccctcctctcctcctcctcc	0.000													2	4	---	---	---	---					
SP7	121340	broad.mit.edu	37	12	53731941	53731942	+	5'Flank	INS	-	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr12:53731941_53731942insG	uc001sct.2	-						SP7_uc001scu.2_5'Flank|SP7_uc001scv.2_5'Flank	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCAGGCAGGTGGGGGGGCGGG	0.485													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	95794449	95794450	+	IGR	DEL	CT	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr12:95794449_95794450delCT								MIR331 (92160 upstream) : METAP2 (73372 downstream)																							TGCCTTCTCCCTCTCTCTCTCT	0.312													3	6	---	---	---	---					
B3GALTL	145173	broad.mit.edu	37	13	31803392	31803392	+	Frame_Shift_Del	DEL	A	-	-	rs141154947		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr13:31803392delA	uc010aaz.2	+	4	341	c.231delA	c.(229-231)TTAfs	p.L77fs		NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	77	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		CAGAGCAGTTAAAAAAAAGCA	0.373													7	114	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	31476159	31476164	+	IGR	DEL	CCCTCC	-	-	rs71420555		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr15:31476159_31476164delCCCTCC								TRPM1 (82235 upstream) : KLF13 (142919 downstream)																							ctcctcctctccctccccctccccct	0.000													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1308665	1308666	+	IGR	INS	-	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr16:1308665_1308666insG								TPSD1 (171 upstream) : UBE2I (50514 downstream)																							ccctttcttgatcccctccccc	0.064													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	81026035	81026036	+	IGR	INS	-	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr17:81026035_81026036insA								B3GNTL1 (16349 upstream) : METRNL (11531 downstream)																							gcgacagcgggggcgacagcgg	0.223													2	4	---	---	---	---					
REXO1	57455	broad.mit.edu	37	19	1827020	1827021	+	In_Frame_Ins	INS	-	GGA	GGA	rs143867072	by1000genomes	TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:1827020_1827021insGGA	uc002lua.3	-	2	1862_1863	c.1767_1768insTCC	c.(1765-1770)insTCC	p.589_590insS	REXO1_uc010dsr.1_In_Frame_Ins_p.543_544insS	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	589_590	Ser-rich.					nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCTggaggtggaggaggagg	0.470													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	4145259	4145260	+	IGR	INS	-	GG	GG			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:4145259_4145260insGG								MAP2K2 (21133 upstream) : CREB3L3 (8369 downstream)																							aggagggagaagagaggaggag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	6562769	6562770	+	IGR	INS	-	T	T			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:6562769_6562770insT								TNFSF9 (26830 upstream) : CD70 (20365 downstream)																							AGTTTTTGCAGtttttttttta	0.173													2	4	---	---	---	---					
LOC113230	113230	broad.mit.edu	37	19	14182142	14182142	+	5'Flank	DEL	A	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:14182142delA	uc002mxz.2	+						LOC113230_uc002mxy.2_5'Flank	NR_024282				RecName: Full=Uncharacterized protein LOC113230;												0						aaaaaaaaagaaaaaaaaaag	0.383													5	6	---	---	---	---					
HAUS8	93323	broad.mit.edu	37	19	17160706	17160707	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:17160706_17160707delGA	uc002nfe.2	-	11	1320_1321	c.1209_1210delTC	c.(1207-1212)TCTCGTfs	p.S403fs	HAUS8_uc002nff.2_Frame_Shift_Del_p.S402fs|HAUS8_uc002nfg.1_Frame_Shift_Del_p.S341fs|HAUS8_uc002nfh.1_Frame_Shift_Del_p.S402fs	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	403_404					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						CTCCCTGAACGAGAGAGAGAGG	0.495													8	470	---	---	---	---					
ZNF160	90338	broad.mit.edu	37	19	53606808	53606808	+	5'Flank	DEL	A	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr19:53606808delA	uc010eqk.2	-						ZNF160_uc002qaq.3_5'Flank|ZNF160_uc002qar.3_5'Flank|ZNF160_uc002qas.3_5'Flank	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160						hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		CCagggaaggaacggggagga	0.348													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	73511522	73511524	+	5'Flank	DEL	GGA	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:73511522_73511524delGGA	uc002sjc.1	+											Homo sapiens cDNA FLJ43061 fis, clone BRTHA3008143.																		gaggaaggatggaggaggaggag	0.616													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	85713952	85713955	+	IGR	DEL	AAGA	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:85713952_85713955delAAGA								SH2D6 (49802 upstream) : MAT2A (52333 downstream)																							ctatctccagaagaaagaaagaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	147298667	147298667	+	IGR	DEL	G	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:147298667delG								None (None upstream) : PABPC1P2 (45958 downstream)																							GGGGGGGGCAGGGGGAAGTAT	0.169													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	157198298	157198298	+	5'Flank	DEL	A	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:157198298delA	uc002tzb.1	-											Homo sapiens cDNA FLJ46875 fis, clone UTERU3014446.																		GGGGGAGGAGAAAAAGGCGGG	0.662													2	4	---	---	---	---					
TNS1	7145	broad.mit.edu	37	2	218867771	218867771	+	5'Flank	DEL	C	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr2:218867771delC	uc010fvk.1	-							NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin							cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		tcctcctcctccccccactcc	0.468													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	37676088	37676091	+	IGR	DEL	CTCC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr20:37676088_37676091delCTCC								DHX35 (7725 upstream) : LOC339568 (166333 downstream)																							ttccttccctctccctccctccct	0.211													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	1751135	1751135	+	IGR	DEL	C	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr4:1751135delC								TACC3 (4240 upstream) : FGFR3 (43904 downstream)																							ctcagcatagccccccccacc	0.144													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	57735670	57735671	+	IGR	DEL	AC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr5:57735670_57735671delAC								ACTBL2 (957034 upstream) : PLK2 (14141 downstream)																							GCAGTGTCTAacacacacacac	0.243													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	153265775	153265777	+	IGR	DEL	AGC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr5:153265775_153265777delAGC								GRIA1 (72347 upstream) : FAM114A2 (105494 downstream)																							Tagcagcagtagcagcagcagca	0.340													3	4	---	---	---	---					
ERGIC1	57222	broad.mit.edu	37	5	172260814	172260815	+	5'Flank	INS	-	C	C	rs70984916		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr5:172260814_172260815insC	uc003mbw.3	+							NM_001031711	NP_001026881	Q969X5	ERGI1_HUMAN	endoplasmic reticulum-golgi intermediate						ER to Golgi vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			cggggggggggcgctctgagaa	0.149													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	156535158	156535158	+	IGR	DEL	T	-	-	rs80075880		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr6:156535158delT								MIR1202 (267145 upstream) : ARID1B (563928 downstream)																							ggatgccatcttggtggggtt	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	98409055	98409057	+	IGR	DEL	TAG	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr7:98409055_98409057delTAG								NPTX2 (149874 upstream) : TMEM130 (35055 downstream)																							gtagtggtgatagtggtgatggt	0.000													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	98409190	98409190	+	IGR	DEL	T	-	-	rs112577704		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr7:98409190delT								NPTX2 (150009 upstream) : TMEM130 (34922 downstream)																							gtggtgatggttggtggtggt	0.085													4	3	---	---	---	---					
FOXP2	93986	broad.mit.edu	37	7	114270016	114270018	+	In_Frame_Del	DEL	CAG	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr7:114270016_114270018delCAG	uc003vhb.2	+	5	927_929	c.553_555delCAG	c.(553-555)CAGdel	p.Q191del	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_In_Frame_Del_p.Q216del|FOXP2_uc003vha.2_In_Frame_Del_p.Q99del|FOXP2_uc011kmu.1_In_Frame_Del_p.Q208del|FOXP2_uc011kmv.1_In_Frame_Del_p.Q191del|FOXP2_uc010ljz.1_In_Frame_Del_p.Q99del|FOXP2_uc003vgt.1_RNA|FOXP2_uc003vgv.1_In_Frame_Del_p.Q191del|FOXP2_uc003vgx.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhd.2_In_Frame_Del_p.Q191del|FOXP2_uc003vhc.2_In_Frame_Del_p.Q216del	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	191	Gln-rich.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						gcagcagcaacagcagcagcagc	0.172													7	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	126899660	126899662	+	IGR	DEL	CAC	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr7:126899660_126899662delCAC								GRM8 (6513 upstream) : ZNF800 (110692 downstream)																							ctaccaccatcaccaccaccacc	0.000													2	4	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12957611	12957613	+	In_Frame_Del	DEL	GCT	-	-	rs137989738		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:12957611_12957613delGCT	uc003wwm.2	-	9	2677_2679	c.2233_2235delAGC	c.(2233-2235)AGCdel	p.S745del	DLC1_uc003wwk.1_In_Frame_Del_p.S308del|DLC1_uc003wwl.1_In_Frame_Del_p.S342del|DLC1_uc011kxx.1_In_Frame_Del_p.S234del	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	745	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TCTCCGACTGGCTGCTGCTGCTG	0.621													8	106	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	19030260	19030261	+	IGR	INS	-	G	G			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:19030260_19030261insG								PSD3 (159064 upstream) : SH2D4A (140946 downstream)																							ggggaggggacggggaggggag	0.153													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	41284152	41284153	+	IGR	DEL	GT	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:41284152_41284153delGT								SFRP1 (117172 upstream) : GOLGA7 (63928 downstream)																							acatatatacgtgtgtgtgtgt	0.000													2	4	---	---	---	---					
KCNB2	9312	broad.mit.edu	37	8	73480396	73480397	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:73480396_73480397insA	uc003xzb.2	+	2	1015_1016	c.427_428insA	c.(427-429)CAAfs	p.Q143fs		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	143	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAGATATCATCAAAAAAAAGAA	0.446													7	208	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	130495364	130495366	+	IGR	DEL	GAA	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr8:130495364_130495366delGAA								None (None upstream) : GSDMC (265077 downstream)																							agaggaagaggaagaagaagaag	0.148													2	4	---	---	---	---					
CEL	1056	broad.mit.edu	37	9	135946921	135946921	+	Frame_Shift_Del	DEL	C	-	-	rs490954		TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chr9:135946921delC	uc010naa.1	+	11	2057	c.2041delC	c.(2041-2043)CCCfs	p.P681fs		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	678	11.|17 X 11 AA tandem repeats, glycodomain, O-linked (mucin type).				cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		tgacgccgggcccccccccgt	0.587													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	6450882	6450883	+	IGR	INS	-	CCT	CCT			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chrX:6450882_6450883insCCT								NLGN4X (304176 upstream) : VCX3A (777 downstream)																							cccacacaccacctcttcctcc	0.149													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	8434834	8434834	+	IGR	DEL	G	-	-			TCGA-CE-A3MD-01A-11D-A20C-08	TCGA-CE-A3MD-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	110e918d-199b-41f0-a655-4c3a1f6989c9	4cd738dc-c677-4206-a16e-f2977c086706	g.chrX:8434834delG								VCX3B (284 upstream) : KAL1 (62082 downstream)																							tggggagggagggaggaagag	0.000													2	4	---	---	---	---					
